From 830b9f4d3567b090e00224f5891a0c50b16ee6bd Mon Sep 17 00:00:00 2001
From: Daniel Blankenberg <dan.blankenberg@gmail.com>
Date: Mon, 11 May 2015 15:04:09 -0400
Subject: [PATCH] Supress pysam binary incompatibility warning when using
 datatypes in binary.py.

---
 lib/galaxy/datatypes/binary.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/lib/galaxy/datatypes/binary.py b/lib/galaxy/datatypes/binary.py
index 3d6f6e0e1e4..724fcaf16e8 100644
--- a/lib/galaxy/datatypes/binary.py
+++ b/lib/galaxy/datatypes/binary.py
@@ -12,6 +12,7 @@ import struct
 import subprocess
 import tempfile
 import re
+import warnings
 import zipfile
 
 from galaxy import eggs
@@ -24,8 +25,11 @@ from galaxy.datatypes.metadata import MetadataElement, MetadataParameter, ListPa
 from galaxy.datatypes import metadata
 import dataproviders
 
-eggs.require( "pysam" )
-from pysam import csamtools
+with warnings.catch_warnings():
+    warnings.simplefilter( "ignore" )
+    eggs.require( "pysam" )
+    from pysam import csamtools
+
 
 log = logging.getLogger(__name__)