From 7d81d2cfcba070558dbb1cb5e7b5be390e797ff3 Mon Sep 17 00:00:00 2001 From: Nicola Soranzo Date: Thu, 26 Apr 2018 10:23:14 +0100 Subject: [PATCH] Fix 2 typos in the docs --- config/local_conda_mapping.yml.sample | 2 +- doc/source/admin/cluster.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/config/local_conda_mapping.yml.sample b/config/local_conda_mapping.yml.sample index 4241ee78d7c..bc9191acbb5 100644 --- a/config/local_conda_mapping.yml.sample +++ b/config/local_conda_mapping.yml.sample @@ -1,2 +1,2 @@ # See $GALAXY_ROOT/lib/galaxy/tools/deps/resolvers/default_conda_mapping.yml for example mapping - -# additional site-specific mappings can be added to config/conda_mapping.yml. +# additional site-specific mappings can be added to config/local_conda_mapping.yml. diff --git a/doc/source/admin/cluster.md b/doc/source/admin/cluster.md index 214fd00fc57..9947f5a45c4 100644 --- a/doc/source/admin/cluster.md +++ b/doc/source/admin/cluster.md @@ -66,7 +66,7 @@ Additionally some of the runners including DRMAA may use the ``cluster_files_dir cluster_files_directory = database/pbs ``` -You may also find that attribute caching in your filesystem causes problems with job completion since it interferes with Galaxy detecting the presence and correct sizes of output files. In NFS caching can be disabled with the `-noac` mount option on Linux (on the Galaxy server), but this may have a significant impact on performance since all attributes will have to be read from the file server upon every file access. You should try the `retry_output_collection` option in `galaxy.ini` first to see if this solves the problem. +You may also find that attribute caching in your filesystem causes problems with job completion since it interferes with Galaxy detecting the presence and correct sizes of output files. In NFS caching can be disabled with the `-noac` mount option on Linux (on the Galaxy server), but this may have a significant impact on performance since all attributes will have to be read from the file server upon every file access. You should try the `retry_job_output_collection` option in `galaxy.ini` first to see if this solves the problem. ## Runner Configuration