diff --git a/scripts/migrate_tools/0003_tools.xml b/scripts/migrate_tools/0003_tools.xml
index 2c0f0c2e3b6..f40fd0936bf 100644
--- a/scripts/migrate_tools/0003_tools.xml
+++ b/scripts/migrate_tools/0003_tools.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <toolshed name="toolshed.g2.bx.psu.edu">
-    <repository name="freebayes" description="Galaxy Freebayes Bayesian genetic variant detector tool" changeset_revision="838dd557c84c">
+    <repository name="freebayes" description="Galaxy Freebayes Bayesian genetic variant detector tool" changeset_revision="213a3d6b579a">
         <tool id="freebayes" version="0.0.2 " file="freebayes.xml" />
     </repository>
 </toolshed>