mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
Update fastq format.
Now we only support FastqSolexa variants. If the quality scores are presented as characters, the integer values are obtained by their ascii code subtract 64.
This commit is contained in:
@@ -89,23 +89,30 @@ A sequence in FASTA format consists of a single-line description, followed by li
|
||||
|
||||
-----
|
||||
|
||||
**Fastq**
|
||||
**FastqSolexa**
|
||||
|
||||
Fastq format stores sequences and Phred qualities in a single file. We define Fastq as the Sanger/Standard variant::
|
||||
Fastq format stores sequences and quality scores in a single file. We define FastqSolexa as the Illumina (Solexa) variant::
|
||||
|
||||
@EAS54_6_R1_2_1_413_324
|
||||
CCCTTCTTGTCTTCAGCGTTTCTCC
|
||||
+
|
||||
;;3;;;;;;;;;;;;7;;;;;;;88
|
||||
@EAS54_6_R1_2_1_540_792
|
||||
TTGGCAGGCCAAGGCCGATGGATCA
|
||||
+
|
||||
;;;;;;;;;;;7;;;;;-;;;3;83
|
||||
@EAS54_6_R1_2_1_443_348
|
||||
GTTGCTTCTGGCGTGGGTGGGGGGG
|
||||
+EAS54_6_R1_2_1_443_348
|
||||
;;;;;;;;;;;9;7;;.7;393333
|
||||
@seq1
|
||||
GACAGCTTGGTTTTTAGTGAGTTGTTCCTTTCTTT
|
||||
+seq1
|
||||
hhhhhhhhhhhhhhhhhhhhhhhhhhPW@hhhhhh
|
||||
@seq2
|
||||
GCAATGACGGCAGCAATAAACTCAACAGGTGCTGG
|
||||
+seq2
|
||||
hhhhhhhhhhhhhhYhhahhhhWhAhFhSIJGChO
|
||||
|
||||
Or::
|
||||
|
||||
@seq1
|
||||
GAATTGATCAGGACATAGGACAACTGTAGGCACCAT
|
||||
+seq1
|
||||
40 40 40 40 35 40 40 40 25 40 40 26 40 9 33 11 40 35 17 40 40 33 40 7 9 15 3 22 15 30 11 17 9 4 9 4
|
||||
@seq2
|
||||
GAGTTCTCGTCGCCTGTAGGCACCATCAATCGTATG
|
||||
+seq2
|
||||
40 15 40 17 6 36 40 40 40 25 40 9 35 33 40 14 14 18 15 17 19 28 31 4 24 18 27 14 15 18 2 8 12 8 11 9
|
||||
|
||||
-----
|
||||
|
||||
**Gff**
|
||||
|
||||
Reference in New Issue
Block a user