diff --git a/display_applications/biom/biom_simple.xml b/lib/galaxy/datatypes/display_applications/configs/biom/biom_simple.xml similarity index 100% rename from display_applications/biom/biom_simple.xml rename to lib/galaxy/datatypes/display_applications/configs/biom/biom_simple.xml diff --git a/display_applications/ensembl/ensembl_bam.xml b/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml similarity index 100% rename from display_applications/ensembl/ensembl_bam.xml rename to lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml diff --git a/display_applications/ensembl/ensembl_gff.xml b/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml similarity index 100% rename from display_applications/ensembl/ensembl_gff.xml rename to lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml diff --git a/display_applications/ensembl/ensembl_interval_as_bed.xml b/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml similarity index 100% rename from display_applications/ensembl/ensembl_interval_as_bed.xml rename to lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml diff --git a/display_applications/gbrowse/gbrowse_gff.xml b/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml similarity index 100% rename from display_applications/gbrowse/gbrowse_gff.xml rename to lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml diff --git a/display_applications/gbrowse/gbrowse_interval_as_bed.xml b/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml similarity index 100% rename from display_applications/gbrowse/gbrowse_interval_as_bed.xml rename to lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml diff --git a/display_applications/gbrowse/gbrowse_wig.xml b/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml similarity index 100% rename from display_applications/gbrowse/gbrowse_wig.xml rename to lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml diff --git a/display_applications/igb/bam.xml b/lib/galaxy/datatypes/display_applications/configs/igb/bam.xml similarity index 100% rename from display_applications/igb/bam.xml rename to lib/galaxy/datatypes/display_applications/configs/igb/bam.xml diff --git a/display_applications/igb/bb.xml b/lib/galaxy/datatypes/display_applications/configs/igb/bb.xml similarity index 100% rename from display_applications/igb/bb.xml rename to lib/galaxy/datatypes/display_applications/configs/igb/bb.xml diff --git a/display_applications/igb/bed.xml b/lib/galaxy/datatypes/display_applications/configs/igb/bed.xml similarity index 100% rename from display_applications/igb/bed.xml rename to lib/galaxy/datatypes/display_applications/configs/igb/bed.xml diff --git a/display_applications/igb/bedgraph.xml b/lib/galaxy/datatypes/display_applications/configs/igb/bedgraph.xml similarity index 100% rename from display_applications/igb/bedgraph.xml rename to lib/galaxy/datatypes/display_applications/configs/igb/bedgraph.xml diff --git a/display_applications/igb/bigwig.xml b/lib/galaxy/datatypes/display_applications/configs/igb/bigwig.xml similarity index 100% rename from display_applications/igb/bigwig.xml rename to lib/galaxy/datatypes/display_applications/configs/igb/bigwig.xml diff --git a/display_applications/igb/gtf.xml b/lib/galaxy/datatypes/display_applications/configs/igb/gtf.xml similarity index 100% rename from display_applications/igb/gtf.xml rename to lib/galaxy/datatypes/display_applications/configs/igb/gtf.xml diff --git a/display_applications/igb/wig.xml b/lib/galaxy/datatypes/display_applications/configs/igb/wig.xml similarity index 100% rename from display_applications/igb/wig.xml rename to lib/galaxy/datatypes/display_applications/configs/igb/wig.xml diff --git a/display_applications/igv/bam.xml b/lib/galaxy/datatypes/display_applications/configs/igv/bam.xml similarity index 100% rename from display_applications/igv/bam.xml rename to lib/galaxy/datatypes/display_applications/configs/igv/bam.xml diff --git a/display_applications/igv/gff.xml b/lib/galaxy/datatypes/display_applications/configs/igv/gff.xml similarity index 100% rename from display_applications/igv/gff.xml rename to lib/galaxy/datatypes/display_applications/configs/igv/gff.xml diff --git a/display_applications/igv/interval_as_bed.xml b/lib/galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml similarity index 100% rename from display_applications/igv/interval_as_bed.xml rename to lib/galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml diff --git a/display_applications/igv/vcf.xml b/lib/galaxy/datatypes/display_applications/configs/igv/vcf.xml similarity index 100% rename from display_applications/igv/vcf.xml rename to lib/galaxy/datatypes/display_applications/configs/igv/vcf.xml diff --git a/display_applications/iobio/bam.xml b/lib/galaxy/datatypes/display_applications/configs/iobio/bam.xml similarity index 100% rename from display_applications/iobio/bam.xml rename to lib/galaxy/datatypes/display_applications/configs/iobio/bam.xml diff --git a/display_applications/iobio/vcf.xml b/lib/galaxy/datatypes/display_applications/configs/iobio/vcf.xml similarity index 100% rename from display_applications/iobio/vcf.xml rename to lib/galaxy/datatypes/display_applications/configs/iobio/vcf.xml diff --git a/display_applications/rviewer/bed.xml b/lib/galaxy/datatypes/display_applications/configs/rviewer/bed.xml similarity index 100% rename from display_applications/rviewer/bed.xml rename to lib/galaxy/datatypes/display_applications/configs/rviewer/bed.xml diff --git a/display_applications/rviewer/vcf.xml b/lib/galaxy/datatypes/display_applications/configs/rviewer/vcf.xml similarity index 100% rename from display_applications/rviewer/vcf.xml rename to lib/galaxy/datatypes/display_applications/configs/rviewer/vcf.xml diff --git a/display_applications/ucsc/bam.xml b/lib/galaxy/datatypes/display_applications/configs/ucsc/bam.xml similarity index 100% rename from display_applications/ucsc/bam.xml rename to lib/galaxy/datatypes/display_applications/configs/ucsc/bam.xml diff --git a/display_applications/ucsc/bigbed.xml b/lib/galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml similarity index 100% rename from display_applications/ucsc/bigbed.xml rename to lib/galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml diff --git a/display_applications/ucsc/bigwig.xml b/lib/galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml similarity index 100% rename from display_applications/ucsc/bigwig.xml rename to lib/galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml diff --git a/display_applications/ucsc/interval_as_bed.xml b/lib/galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml similarity index 100% rename from display_applications/ucsc/interval_as_bed.xml rename to lib/galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml diff --git a/display_applications/ucsc/maf_customtrack.xml b/lib/galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml similarity index 100% rename from display_applications/ucsc/maf_customtrack.xml rename to lib/galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml diff --git a/display_applications/ucsc/vcf.xml b/lib/galaxy/datatypes/display_applications/configs/ucsc/vcf.xml similarity index 100% rename from display_applications/ucsc/vcf.xml rename to lib/galaxy/datatypes/display_applications/configs/ucsc/vcf.xml diff --git a/tools/data_source/access_libraries.xml b/lib/galaxy/tools/bundled/data_source/access_libraries.xml similarity index 100% rename from tools/data_source/access_libraries.xml rename to lib/galaxy/tools/bundled/data_source/access_libraries.xml diff --git a/tools/data_source/bed_convert.xml b/lib/galaxy/tools/bundled/data_source/bed_convert.xml similarity index 100% rename from tools/data_source/bed_convert.xml rename to lib/galaxy/tools/bundled/data_source/bed_convert.xml diff --git a/tools/data_source/biomart.xml b/lib/galaxy/tools/bundled/data_source/biomart.xml similarity index 100% rename from tools/data_source/biomart.xml rename to lib/galaxy/tools/bundled/data_source/biomart.xml diff --git a/tools/data_source/biomart_test.xml b/lib/galaxy/tools/bundled/data_source/biomart_test.xml similarity index 100% rename from tools/data_source/biomart_test.xml rename to lib/galaxy/tools/bundled/data_source/biomart_test.xml diff --git a/tools/data_source/cbi_rice_mart.xml b/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml similarity index 100% rename from tools/data_source/cbi_rice_mart.xml rename to lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml diff --git a/tools/data_source/data_source.py b/lib/galaxy/tools/bundled/data_source/data_source.py similarity index 100% rename from tools/data_source/data_source.py rename to lib/galaxy/tools/bundled/data_source/data_source.py diff --git a/tools/data_source/ebi_sra.xml b/lib/galaxy/tools/bundled/data_source/ebi_sra.xml similarity index 100% rename from tools/data_source/ebi_sra.xml rename to lib/galaxy/tools/bundled/data_source/ebi_sra.xml diff --git a/tools/data_source/eupathdb.xml b/lib/galaxy/tools/bundled/data_source/eupathdb.xml similarity index 100% rename from tools/data_source/eupathdb.xml rename to lib/galaxy/tools/bundled/data_source/eupathdb.xml diff --git a/tools/data_source/fetch.py b/lib/galaxy/tools/bundled/data_source/fetch.py similarity index 100% rename from tools/data_source/fetch.py rename to lib/galaxy/tools/bundled/data_source/fetch.py diff --git a/tools/data_source/fly_modencode.xml b/lib/galaxy/tools/bundled/data_source/fly_modencode.xml similarity index 100% rename from tools/data_source/fly_modencode.xml rename to lib/galaxy/tools/bundled/data_source/fly_modencode.xml diff --git a/tools/data_source/flymine.xml b/lib/galaxy/tools/bundled/data_source/flymine.xml similarity index 100% rename from tools/data_source/flymine.xml rename to lib/galaxy/tools/bundled/data_source/flymine.xml diff --git a/tools/data_source/flymine_test.xml b/lib/galaxy/tools/bundled/data_source/flymine_test.xml similarity index 100% rename from tools/data_source/flymine_test.xml rename to lib/galaxy/tools/bundled/data_source/flymine_test.xml diff --git a/tools/data_source/genbank.py b/lib/galaxy/tools/bundled/data_source/genbank.py similarity index 100% rename from tools/data_source/genbank.py rename to lib/galaxy/tools/bundled/data_source/genbank.py diff --git a/tools/data_source/genbank.xml b/lib/galaxy/tools/bundled/data_source/genbank.xml similarity index 100% rename from tools/data_source/genbank.xml rename to lib/galaxy/tools/bundled/data_source/genbank.xml diff --git a/tools/data_source/gramene_mart.xml b/lib/galaxy/tools/bundled/data_source/gramene_mart.xml similarity index 100% rename from tools/data_source/gramene_mart.xml rename to lib/galaxy/tools/bundled/data_source/gramene_mart.xml diff --git a/tools/data_source/hapmapmart.xml b/lib/galaxy/tools/bundled/data_source/hapmapmart.xml similarity index 100% rename from tools/data_source/hapmapmart.xml rename to lib/galaxy/tools/bundled/data_source/hapmapmart.xml diff --git a/tools/data_source/hbvar.xml b/lib/galaxy/tools/bundled/data_source/hbvar.xml similarity index 100% rename from tools/data_source/hbvar.xml rename to lib/galaxy/tools/bundled/data_source/hbvar.xml diff --git a/tools/data_source/hbvar_filter.py b/lib/galaxy/tools/bundled/data_source/hbvar_filter.py similarity index 100% rename from tools/data_source/hbvar_filter.py rename to lib/galaxy/tools/bundled/data_source/hbvar_filter.py diff --git a/tools/data_source/import.py b/lib/galaxy/tools/bundled/data_source/import.py similarity index 100% rename from tools/data_source/import.py rename to lib/galaxy/tools/bundled/data_source/import.py diff --git a/tools/data_source/import.xml b/lib/galaxy/tools/bundled/data_source/import.xml similarity index 100% rename from tools/data_source/import.xml rename to lib/galaxy/tools/bundled/data_source/import.xml diff --git a/tools/data_source/metabolicmine.xml b/lib/galaxy/tools/bundled/data_source/metabolicmine.xml similarity index 100% rename from tools/data_source/metabolicmine.xml rename to lib/galaxy/tools/bundled/data_source/metabolicmine.xml diff --git a/tools/data_source/microbial_import.py b/lib/galaxy/tools/bundled/data_source/microbial_import.py similarity index 100% rename from tools/data_source/microbial_import.py rename to lib/galaxy/tools/bundled/data_source/microbial_import.py diff --git a/tools/data_source/microbial_import.xml b/lib/galaxy/tools/bundled/data_source/microbial_import.xml similarity index 100% rename from tools/data_source/microbial_import.xml rename to lib/galaxy/tools/bundled/data_source/microbial_import.xml diff --git a/tools/data_source/microbial_import_code.py b/lib/galaxy/tools/bundled/data_source/microbial_import_code.py similarity index 100% rename from tools/data_source/microbial_import_code.py rename to lib/galaxy/tools/bundled/data_source/microbial_import_code.py diff --git a/tools/data_source/modmine.xml b/lib/galaxy/tools/bundled/data_source/modmine.xml similarity index 100% rename from tools/data_source/modmine.xml rename to lib/galaxy/tools/bundled/data_source/modmine.xml diff --git a/tools/data_source/mousemine.xml b/lib/galaxy/tools/bundled/data_source/mousemine.xml similarity index 100% rename from tools/data_source/mousemine.xml rename to lib/galaxy/tools/bundled/data_source/mousemine.xml diff --git a/tools/data_source/ratmine.xml b/lib/galaxy/tools/bundled/data_source/ratmine.xml similarity index 100% rename from tools/data_source/ratmine.xml rename to lib/galaxy/tools/bundled/data_source/ratmine.xml diff --git a/tools/data_source/ucsc_tablebrowser.xml b/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml similarity index 100% rename from tools/data_source/ucsc_tablebrowser.xml rename to lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml diff --git a/tools/data_source/ucsc_tablebrowser_archaea.xml b/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml similarity index 100% rename from tools/data_source/ucsc_tablebrowser_archaea.xml rename to lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml diff --git a/tools/data_source/ucsc_tablebrowser_test.xml b/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml similarity index 100% rename from tools/data_source/ucsc_tablebrowser_test.xml rename to lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml diff --git a/tools/data_source/upload.py b/lib/galaxy/tools/bundled/data_source/upload.py similarity index 100% rename from tools/data_source/upload.py rename to lib/galaxy/tools/bundled/data_source/upload.py diff --git a/tools/data_source/upload.xml b/lib/galaxy/tools/bundled/data_source/upload.xml similarity index 100% rename from tools/data_source/upload.xml rename to lib/galaxy/tools/bundled/data_source/upload.xml diff --git a/tools/data_source/worm_modencode.xml b/lib/galaxy/tools/bundled/data_source/worm_modencode.xml similarity index 100% rename from tools/data_source/worm_modencode.xml rename to lib/galaxy/tools/bundled/data_source/worm_modencode.xml diff --git a/tools/data_source/wormbase.xml b/lib/galaxy/tools/bundled/data_source/wormbase.xml similarity index 100% rename from tools/data_source/wormbase.xml rename to lib/galaxy/tools/bundled/data_source/wormbase.xml diff --git a/tools/data_source/wormbase_test.xml b/lib/galaxy/tools/bundled/data_source/wormbase_test.xml similarity index 100% rename from tools/data_source/wormbase_test.xml rename to lib/galaxy/tools/bundled/data_source/wormbase_test.xml diff --git a/tools/data_source/yeastmine.xml b/lib/galaxy/tools/bundled/data_source/yeastmine.xml similarity index 100% rename from tools/data_source/yeastmine.xml rename to lib/galaxy/tools/bundled/data_source/yeastmine.xml diff --git a/tools/data_source/zebrafishmine.xml b/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml similarity index 100% rename from tools/data_source/zebrafishmine.xml rename to lib/galaxy/tools/bundled/data_source/zebrafishmine.xml diff --git a/tools/evolution/add_scores.py b/lib/galaxy/tools/bundled/evolution/add_scores.py similarity index 100% rename from tools/evolution/add_scores.py rename to lib/galaxy/tools/bundled/evolution/add_scores.py diff --git a/tools/evolution/add_scores.xml b/lib/galaxy/tools/bundled/evolution/add_scores.xml similarity index 100% rename from tools/evolution/add_scores.xml rename to lib/galaxy/tools/bundled/evolution/add_scores.xml diff --git a/tools/evolution/codingSnps.pl b/lib/galaxy/tools/bundled/evolution/codingSnps.pl similarity index 100% rename from tools/evolution/codingSnps.pl rename to lib/galaxy/tools/bundled/evolution/codingSnps.pl diff --git a/tools/evolution/codingSnps.xml b/lib/galaxy/tools/bundled/evolution/codingSnps.xml similarity index 100% rename from tools/evolution/codingSnps.xml rename to lib/galaxy/tools/bundled/evolution/codingSnps.xml diff --git a/tools/evolution/codingSnps_filter.py b/lib/galaxy/tools/bundled/evolution/codingSnps_filter.py similarity index 100% rename from tools/evolution/codingSnps_filter.py rename to lib/galaxy/tools/bundled/evolution/codingSnps_filter.py diff --git a/tools/extract/extract_genomic_dna.py b/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py similarity index 100% rename from tools/extract/extract_genomic_dna.py rename to lib/galaxy/tools/bundled/extract/extract_genomic_dna.py diff --git a/tools/extract/extract_genomic_dna.xml b/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml similarity index 100% rename from tools/extract/extract_genomic_dna.xml rename to lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml diff --git a/tools/extract/liftOver_wrapper.py b/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py similarity index 100% rename from tools/extract/liftOver_wrapper.py rename to lib/galaxy/tools/bundled/extract/liftOver_wrapper.py diff --git a/tools/extract/liftOver_wrapper.xml b/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml similarity index 100% rename from tools/extract/liftOver_wrapper.xml rename to lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml diff --git a/tools/filters/CreateInterval.pl b/lib/galaxy/tools/bundled/filters/CreateInterval.pl similarity index 100% rename from tools/filters/CreateInterval.pl rename to lib/galaxy/tools/bundled/filters/CreateInterval.pl diff --git a/tools/filters/CreateInterval.xml b/lib/galaxy/tools/bundled/filters/CreateInterval.xml similarity index 100% rename from tools/filters/CreateInterval.xml rename to lib/galaxy/tools/bundled/filters/CreateInterval.xml diff --git a/tools/filters/axt_to_concat_fasta.py b/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py similarity index 100% rename from tools/filters/axt_to_concat_fasta.py rename to lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py diff --git a/tools/filters/axt_to_concat_fasta.xml b/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml similarity index 100% rename from tools/filters/axt_to_concat_fasta.xml rename to lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml diff --git a/tools/filters/axt_to_fasta.py b/lib/galaxy/tools/bundled/filters/axt_to_fasta.py similarity index 100% rename from tools/filters/axt_to_fasta.py rename to lib/galaxy/tools/bundled/filters/axt_to_fasta.py diff --git a/tools/filters/axt_to_fasta.xml b/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml similarity index 100% rename from tools/filters/axt_to_fasta.xml rename to lib/galaxy/tools/bundled/filters/axt_to_fasta.xml diff --git a/tools/filters/axt_to_lav.py b/lib/galaxy/tools/bundled/filters/axt_to_lav.py similarity index 100% rename from tools/filters/axt_to_lav.py rename to lib/galaxy/tools/bundled/filters/axt_to_lav.py diff --git a/tools/filters/axt_to_lav.xml b/lib/galaxy/tools/bundled/filters/axt_to_lav.xml similarity index 100% rename from tools/filters/axt_to_lav.xml rename to lib/galaxy/tools/bundled/filters/axt_to_lav.xml diff --git a/tools/filters/axt_to_lav_code.py b/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py similarity index 100% rename from tools/filters/axt_to_lav_code.py rename to lib/galaxy/tools/bundled/filters/axt_to_lav_code.py diff --git a/tools/filters/bed2gff.xml b/lib/galaxy/tools/bundled/filters/bed2gff.xml similarity index 100% rename from tools/filters/bed2gff.xml rename to lib/galaxy/tools/bundled/filters/bed2gff.xml diff --git a/tools/filters/bed_to_bigbed.xml b/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml similarity index 100% rename from tools/filters/bed_to_bigbed.xml rename to lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml diff --git a/tools/filters/bed_to_gff_converter.py b/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py similarity index 100% rename from tools/filters/bed_to_gff_converter.py rename to lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py diff --git a/tools/filters/catWrapper.py b/lib/galaxy/tools/bundled/filters/catWrapper.py similarity index 100% rename from tools/filters/catWrapper.py rename to lib/galaxy/tools/bundled/filters/catWrapper.py diff --git a/tools/filters/catWrapper.xml b/lib/galaxy/tools/bundled/filters/catWrapper.xml similarity index 100% rename from tools/filters/catWrapper.xml rename to lib/galaxy/tools/bundled/filters/catWrapper.xml diff --git a/tools/filters/changeCase.pl b/lib/galaxy/tools/bundled/filters/changeCase.pl similarity index 100% rename from tools/filters/changeCase.pl rename to lib/galaxy/tools/bundled/filters/changeCase.pl diff --git a/tools/filters/changeCase.xml b/lib/galaxy/tools/bundled/filters/changeCase.xml similarity index 100% rename from tools/filters/changeCase.xml rename to lib/galaxy/tools/bundled/filters/changeCase.xml diff --git a/tools/filters/commWrapper.pl b/lib/galaxy/tools/bundled/filters/commWrapper.pl similarity index 100% rename from tools/filters/commWrapper.pl rename to lib/galaxy/tools/bundled/filters/commWrapper.pl diff --git a/tools/filters/commWrapper.xml b/lib/galaxy/tools/bundled/filters/commWrapper.xml similarity index 100% rename from tools/filters/commWrapper.xml rename to lib/galaxy/tools/bundled/filters/commWrapper.xml diff --git a/tools/filters/compare.xml b/lib/galaxy/tools/bundled/filters/compare.xml similarity index 100% rename from tools/filters/compare.xml rename to lib/galaxy/tools/bundled/filters/compare.xml diff --git a/tools/filters/condense_characters.pl b/lib/galaxy/tools/bundled/filters/condense_characters.pl similarity index 100% rename from tools/filters/condense_characters.pl rename to lib/galaxy/tools/bundled/filters/condense_characters.pl diff --git a/tools/filters/condense_characters.xml b/lib/galaxy/tools/bundled/filters/condense_characters.xml similarity index 100% rename from tools/filters/condense_characters.xml rename to lib/galaxy/tools/bundled/filters/condense_characters.xml diff --git a/tools/filters/convert_characters.pl b/lib/galaxy/tools/bundled/filters/convert_characters.pl similarity index 100% rename from tools/filters/convert_characters.pl rename to lib/galaxy/tools/bundled/filters/convert_characters.pl diff --git a/tools/filters/convert_characters.py b/lib/galaxy/tools/bundled/filters/convert_characters.py similarity index 100% rename from tools/filters/convert_characters.py rename to lib/galaxy/tools/bundled/filters/convert_characters.py diff --git a/tools/filters/convert_characters.xml b/lib/galaxy/tools/bundled/filters/convert_characters.xml similarity index 100% rename from tools/filters/convert_characters.xml rename to lib/galaxy/tools/bundled/filters/convert_characters.xml diff --git a/tools/filters/cutWrapper.pl b/lib/galaxy/tools/bundled/filters/cutWrapper.pl similarity index 100% rename from tools/filters/cutWrapper.pl rename to lib/galaxy/tools/bundled/filters/cutWrapper.pl diff --git a/tools/filters/cutWrapper.xml b/lib/galaxy/tools/bundled/filters/cutWrapper.xml similarity index 100% rename from tools/filters/cutWrapper.xml rename to lib/galaxy/tools/bundled/filters/cutWrapper.xml diff --git a/tools/filters/fileGrep.xml b/lib/galaxy/tools/bundled/filters/fileGrep.xml similarity index 100% rename from tools/filters/fileGrep.xml rename to lib/galaxy/tools/bundled/filters/fileGrep.xml diff --git a/tools/filters/fixedValueColumn.pl b/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl similarity index 100% rename from tools/filters/fixedValueColumn.pl rename to lib/galaxy/tools/bundled/filters/fixedValueColumn.pl diff --git a/tools/filters/fixedValueColumn.xml b/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml similarity index 100% rename from tools/filters/fixedValueColumn.xml rename to lib/galaxy/tools/bundled/filters/fixedValueColumn.xml diff --git a/tools/filters/gff/extract_GFF_Features.py b/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py similarity index 100% rename from tools/filters/gff/extract_GFF_Features.py rename to lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py diff --git a/tools/filters/gff/extract_GFF_Features.xml b/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml similarity index 100% rename from tools/filters/gff/extract_GFF_Features.xml rename to lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml diff --git a/tools/filters/gff/gff_filter_by_attribute.py b/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py similarity index 100% rename from tools/filters/gff/gff_filter_by_attribute.py rename to lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py diff --git a/tools/filters/gff/gff_filter_by_attribute.xml b/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml similarity index 100% rename from tools/filters/gff/gff_filter_by_attribute.xml rename to lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml diff --git a/tools/filters/gff/gff_filter_by_feature_count.py b/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py similarity index 100% rename from tools/filters/gff/gff_filter_by_feature_count.py rename to lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py diff --git a/tools/filters/gff/gff_filter_by_feature_count.xml b/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml similarity index 100% rename from tools/filters/gff/gff_filter_by_feature_count.xml rename to lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml diff --git a/tools/filters/gff/gtf_filter_by_attribute_values_list.py b/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py similarity index 100% rename from tools/filters/gff/gtf_filter_by_attribute_values_list.py rename to lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py diff --git a/tools/filters/gff/gtf_filter_by_attribute_values_list.xml b/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml similarity index 100% rename from tools/filters/gff/gtf_filter_by_attribute_values_list.xml rename to lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml diff --git a/tools/filters/gff/sort_gtf.py b/lib/galaxy/tools/bundled/filters/gff/sort_gtf.py similarity index 100% rename from tools/filters/gff/sort_gtf.py rename to lib/galaxy/tools/bundled/filters/gff/sort_gtf.py diff --git a/tools/filters/gff2bed.xml b/lib/galaxy/tools/bundled/filters/gff2bed.xml similarity index 100% rename from tools/filters/gff2bed.xml rename to lib/galaxy/tools/bundled/filters/gff2bed.xml diff --git a/tools/filters/gff_to_bed_converter.py b/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py similarity index 100% rename from tools/filters/gff_to_bed_converter.py rename to lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py diff --git a/tools/filters/grep.py b/lib/galaxy/tools/bundled/filters/grep.py similarity index 100% rename from tools/filters/grep.py rename to lib/galaxy/tools/bundled/filters/grep.py diff --git a/tools/filters/grep.xml b/lib/galaxy/tools/bundled/filters/grep.xml similarity index 100% rename from tools/filters/grep.xml rename to lib/galaxy/tools/bundled/filters/grep.xml diff --git a/tools/filters/gtf2bedgraph.xml b/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml similarity index 100% rename from tools/filters/gtf2bedgraph.xml rename to lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml diff --git a/tools/filters/gtf_to_bedgraph_converter.py b/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py similarity index 100% rename from tools/filters/gtf_to_bedgraph_converter.py rename to lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py diff --git a/tools/filters/headWrapper.pl b/lib/galaxy/tools/bundled/filters/headWrapper.pl similarity index 100% rename from tools/filters/headWrapper.pl rename to lib/galaxy/tools/bundled/filters/headWrapper.pl diff --git a/tools/filters/headWrapper.xml b/lib/galaxy/tools/bundled/filters/headWrapper.xml similarity index 100% rename from tools/filters/headWrapper.xml rename to lib/galaxy/tools/bundled/filters/headWrapper.xml diff --git a/tools/filters/join.py b/lib/galaxy/tools/bundled/filters/join.py similarity index 100% rename from tools/filters/join.py rename to lib/galaxy/tools/bundled/filters/join.py diff --git a/tools/filters/joinWrapper.pl b/lib/galaxy/tools/bundled/filters/joinWrapper.pl similarity index 100% rename from tools/filters/joinWrapper.pl rename to lib/galaxy/tools/bundled/filters/joinWrapper.pl diff --git a/tools/filters/joinWrapper.py b/lib/galaxy/tools/bundled/filters/joinWrapper.py similarity index 100% rename from tools/filters/joinWrapper.py rename to lib/galaxy/tools/bundled/filters/joinWrapper.py diff --git a/tools/filters/joiner.xml b/lib/galaxy/tools/bundled/filters/joiner.xml similarity index 100% rename from tools/filters/joiner.xml rename to lib/galaxy/tools/bundled/filters/joiner.xml diff --git a/tools/filters/joiner2.xml b/lib/galaxy/tools/bundled/filters/joiner2.xml similarity index 100% rename from tools/filters/joiner2.xml rename to lib/galaxy/tools/bundled/filters/joiner2.xml diff --git a/tools/filters/lav_to_bed.py b/lib/galaxy/tools/bundled/filters/lav_to_bed.py similarity index 100% rename from tools/filters/lav_to_bed.py rename to lib/galaxy/tools/bundled/filters/lav_to_bed.py diff --git a/tools/filters/lav_to_bed.xml b/lib/galaxy/tools/bundled/filters/lav_to_bed.xml similarity index 100% rename from tools/filters/lav_to_bed.xml rename to lib/galaxy/tools/bundled/filters/lav_to_bed.xml diff --git a/tools/filters/lav_to_bed_code.py b/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py similarity index 100% rename from tools/filters/lav_to_bed_code.py rename to lib/galaxy/tools/bundled/filters/lav_to_bed_code.py diff --git a/tools/filters/mergeCols.py b/lib/galaxy/tools/bundled/filters/mergeCols.py similarity index 100% rename from tools/filters/mergeCols.py rename to lib/galaxy/tools/bundled/filters/mergeCols.py diff --git a/tools/filters/mergeCols.xml b/lib/galaxy/tools/bundled/filters/mergeCols.xml similarity index 100% rename from tools/filters/mergeCols.xml rename to lib/galaxy/tools/bundled/filters/mergeCols.xml diff --git a/tools/filters/pasteWrapper.pl b/lib/galaxy/tools/bundled/filters/pasteWrapper.pl similarity index 100% rename from tools/filters/pasteWrapper.pl rename to lib/galaxy/tools/bundled/filters/pasteWrapper.pl diff --git a/tools/filters/pasteWrapper.xml b/lib/galaxy/tools/bundled/filters/pasteWrapper.xml similarity index 100% rename from tools/filters/pasteWrapper.xml rename to lib/galaxy/tools/bundled/filters/pasteWrapper.xml diff --git a/tools/filters/random_lines_two_pass.py b/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py similarity index 100% rename from tools/filters/random_lines_two_pass.py rename to lib/galaxy/tools/bundled/filters/random_lines_two_pass.py diff --git a/tools/filters/randomlines.py b/lib/galaxy/tools/bundled/filters/randomlines.py similarity index 100% rename from tools/filters/randomlines.py rename to lib/galaxy/tools/bundled/filters/randomlines.py diff --git a/tools/filters/randomlines.xml b/lib/galaxy/tools/bundled/filters/randomlines.xml similarity index 100% rename from tools/filters/randomlines.xml rename to lib/galaxy/tools/bundled/filters/randomlines.xml diff --git a/tools/filters/remove_beginning.pl b/lib/galaxy/tools/bundled/filters/remove_beginning.pl similarity index 100% rename from tools/filters/remove_beginning.pl rename to lib/galaxy/tools/bundled/filters/remove_beginning.pl diff --git a/tools/filters/remove_beginning.xml b/lib/galaxy/tools/bundled/filters/remove_beginning.xml similarity index 100% rename from tools/filters/remove_beginning.xml rename to lib/galaxy/tools/bundled/filters/remove_beginning.xml diff --git a/tools/filters/secure_hash_message_digest.py b/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py similarity index 100% rename from tools/filters/secure_hash_message_digest.py rename to lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py diff --git a/tools/filters/secure_hash_message_digest.xml b/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml similarity index 100% rename from tools/filters/secure_hash_message_digest.xml rename to lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml diff --git a/tools/filters/sff_extract.py b/lib/galaxy/tools/bundled/filters/sff_extract.py similarity index 100% rename from tools/filters/sff_extract.py rename to lib/galaxy/tools/bundled/filters/sff_extract.py diff --git a/tools/filters/sff_extractor.xml b/lib/galaxy/tools/bundled/filters/sff_extractor.xml similarity index 100% rename from tools/filters/sff_extractor.xml rename to lib/galaxy/tools/bundled/filters/sff_extractor.xml diff --git a/tools/filters/sorter.py b/lib/galaxy/tools/bundled/filters/sorter.py similarity index 100% rename from tools/filters/sorter.py rename to lib/galaxy/tools/bundled/filters/sorter.py diff --git a/tools/filters/sorter.xml b/lib/galaxy/tools/bundled/filters/sorter.xml similarity index 100% rename from tools/filters/sorter.xml rename to lib/galaxy/tools/bundled/filters/sorter.xml diff --git a/tools/filters/tailWrapper.pl b/lib/galaxy/tools/bundled/filters/tailWrapper.pl similarity index 100% rename from tools/filters/tailWrapper.pl rename to lib/galaxy/tools/bundled/filters/tailWrapper.pl diff --git a/tools/filters/tailWrapper.xml b/lib/galaxy/tools/bundled/filters/tailWrapper.xml similarity index 100% rename from tools/filters/tailWrapper.xml rename to lib/galaxy/tools/bundled/filters/tailWrapper.xml diff --git a/tools/filters/trimmer.py b/lib/galaxy/tools/bundled/filters/trimmer.py similarity index 100% rename from tools/filters/trimmer.py rename to lib/galaxy/tools/bundled/filters/trimmer.py diff --git a/tools/filters/trimmer.xml b/lib/galaxy/tools/bundled/filters/trimmer.xml similarity index 100% rename from tools/filters/trimmer.xml rename to lib/galaxy/tools/bundled/filters/trimmer.xml diff --git a/tools/filters/ucsc_gene_bed_to_exon_bed.py b/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py similarity index 100% rename from tools/filters/ucsc_gene_bed_to_exon_bed.py rename to lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py diff --git a/tools/filters/ucsc_gene_bed_to_exon_bed.xml b/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml similarity index 100% rename from tools/filters/ucsc_gene_bed_to_exon_bed.xml rename to lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml diff --git a/tools/filters/ucsc_gene_bed_to_intron_bed.py b/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py similarity index 100% rename from tools/filters/ucsc_gene_bed_to_intron_bed.py rename to lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py diff --git a/tools/filters/ucsc_gene_bed_to_intron_bed.xml b/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml similarity index 100% rename from tools/filters/ucsc_gene_bed_to_intron_bed.xml rename to lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml diff --git a/tools/filters/ucsc_gene_table_to_intervals.py b/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py similarity index 100% rename from tools/filters/ucsc_gene_table_to_intervals.py rename to lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py diff --git a/tools/filters/ucsc_gene_table_to_intervals.xml b/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml similarity index 100% rename from tools/filters/ucsc_gene_table_to_intervals.xml rename to lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml diff --git a/tools/filters/uniq.py b/lib/galaxy/tools/bundled/filters/uniq.py similarity index 100% rename from tools/filters/uniq.py rename to lib/galaxy/tools/bundled/filters/uniq.py diff --git a/tools/filters/uniq.xml b/lib/galaxy/tools/bundled/filters/uniq.xml similarity index 100% rename from tools/filters/uniq.xml rename to lib/galaxy/tools/bundled/filters/uniq.xml diff --git a/tools/filters/wc_gnu.xml b/lib/galaxy/tools/bundled/filters/wc_gnu.xml similarity index 100% rename from tools/filters/wc_gnu.xml rename to lib/galaxy/tools/bundled/filters/wc_gnu.xml diff --git a/tools/filters/wig_to_bigwig.xml b/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml similarity index 100% rename from tools/filters/wig_to_bigwig.xml rename to lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml diff --git a/tools/filters/wiggle_to_simple.py b/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py similarity index 100% rename from tools/filters/wiggle_to_simple.py rename to lib/galaxy/tools/bundled/filters/wiggle_to_simple.py diff --git a/tools/filters/wiggle_to_simple.xml b/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml similarity index 100% rename from tools/filters/wiggle_to_simple.xml rename to lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml diff --git a/tools/genomespace/genomespace_exporter.py b/lib/galaxy/tools/bundled/genomespace/genomespace_exporter.py similarity index 100% rename from tools/genomespace/genomespace_exporter.py rename to lib/galaxy/tools/bundled/genomespace/genomespace_exporter.py diff --git a/tools/genomespace/genomespace_exporter.xml b/lib/galaxy/tools/bundled/genomespace/genomespace_exporter.xml similarity index 100% rename from tools/genomespace/genomespace_exporter.xml rename to lib/galaxy/tools/bundled/genomespace/genomespace_exporter.xml diff --git a/tools/genomespace/genomespace_file_browser.py b/lib/galaxy/tools/bundled/genomespace/genomespace_file_browser.py similarity index 100% rename from tools/genomespace/genomespace_file_browser.py rename to lib/galaxy/tools/bundled/genomespace/genomespace_file_browser.py diff --git a/tools/genomespace/genomespace_file_browser_dev.xml b/lib/galaxy/tools/bundled/genomespace/genomespace_file_browser_dev.xml similarity index 100% rename from tools/genomespace/genomespace_file_browser_dev.xml rename to lib/galaxy/tools/bundled/genomespace/genomespace_file_browser_dev.xml diff --git a/tools/genomespace/genomespace_file_browser_prod.xml b/lib/galaxy/tools/bundled/genomespace/genomespace_file_browser_prod.xml similarity index 100% rename from tools/genomespace/genomespace_file_browser_prod.xml rename to lib/galaxy/tools/bundled/genomespace/genomespace_file_browser_prod.xml diff --git a/tools/genomespace/genomespace_file_browser_test.xml b/lib/galaxy/tools/bundled/genomespace/genomespace_file_browser_test.xml similarity index 100% rename from tools/genomespace/genomespace_file_browser_test.xml rename to lib/galaxy/tools/bundled/genomespace/genomespace_file_browser_test.xml diff --git a/tools/genomespace/genomespace_importer.py b/lib/galaxy/tools/bundled/genomespace/genomespace_importer.py similarity index 100% rename from tools/genomespace/genomespace_importer.py rename to lib/galaxy/tools/bundled/genomespace/genomespace_importer.py diff --git a/tools/genomespace/genomespace_importer.xml b/lib/galaxy/tools/bundled/genomespace/genomespace_importer.xml similarity index 100% rename from tools/genomespace/genomespace_importer.xml rename to lib/galaxy/tools/bundled/genomespace/genomespace_importer.xml diff --git a/tools/maf/genebed_maf_to_fasta.xml b/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml similarity index 100% rename from tools/maf/genebed_maf_to_fasta.xml rename to lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml diff --git a/tools/maf/interval2maf.py b/lib/galaxy/tools/bundled/maf/interval2maf.py similarity index 100% rename from tools/maf/interval2maf.py rename to lib/galaxy/tools/bundled/maf/interval2maf.py diff --git a/tools/maf/interval2maf.xml b/lib/galaxy/tools/bundled/maf/interval2maf.xml similarity index 100% rename from tools/maf/interval2maf.xml rename to lib/galaxy/tools/bundled/maf/interval2maf.xml diff --git a/tools/maf/interval2maf_pairwise.xml b/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml similarity index 100% rename from tools/maf/interval2maf_pairwise.xml rename to lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml diff --git a/tools/maf/interval_maf_to_merged_fasta.py b/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py similarity index 100% rename from tools/maf/interval_maf_to_merged_fasta.py rename to lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py diff --git a/tools/maf/interval_maf_to_merged_fasta.xml b/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml similarity index 100% rename from tools/maf/interval_maf_to_merged_fasta.xml rename to lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml diff --git a/tools/maf/macros.xml b/lib/galaxy/tools/bundled/maf/macros.xml similarity index 100% rename from tools/maf/macros.xml rename to lib/galaxy/tools/bundled/maf/macros.xml diff --git a/tools/maf/maf_by_block_number.py b/lib/galaxy/tools/bundled/maf/maf_by_block_number.py similarity index 100% rename from tools/maf/maf_by_block_number.py rename to lib/galaxy/tools/bundled/maf/maf_by_block_number.py diff --git a/tools/maf/maf_by_block_number.xml b/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml similarity index 100% rename from tools/maf/maf_by_block_number.xml rename to lib/galaxy/tools/bundled/maf/maf_by_block_number.xml diff --git a/tools/maf/maf_filter.py b/lib/galaxy/tools/bundled/maf/maf_filter.py similarity index 100% rename from tools/maf/maf_filter.py rename to lib/galaxy/tools/bundled/maf/maf_filter.py diff --git a/tools/maf/maf_filter.xml b/lib/galaxy/tools/bundled/maf/maf_filter.xml similarity index 100% rename from tools/maf/maf_filter.xml rename to lib/galaxy/tools/bundled/maf/maf_filter.xml diff --git a/tools/maf/maf_limit_size.py b/lib/galaxy/tools/bundled/maf/maf_limit_size.py similarity index 100% rename from tools/maf/maf_limit_size.py rename to lib/galaxy/tools/bundled/maf/maf_limit_size.py diff --git a/tools/maf/maf_limit_size.xml b/lib/galaxy/tools/bundled/maf/maf_limit_size.xml similarity index 100% rename from tools/maf/maf_limit_size.xml rename to lib/galaxy/tools/bundled/maf/maf_limit_size.xml diff --git a/tools/maf/maf_limit_to_species.py b/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py similarity index 100% rename from tools/maf/maf_limit_to_species.py rename to lib/galaxy/tools/bundled/maf/maf_limit_to_species.py diff --git a/tools/maf/maf_limit_to_species.xml b/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml similarity index 100% rename from tools/maf/maf_limit_to_species.xml rename to lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml diff --git a/tools/maf/maf_reverse_complement.py b/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py similarity index 100% rename from tools/maf/maf_reverse_complement.py rename to lib/galaxy/tools/bundled/maf/maf_reverse_complement.py diff --git a/tools/maf/maf_reverse_complement.xml b/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml similarity index 100% rename from tools/maf/maf_reverse_complement.xml rename to lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml diff --git a/tools/maf/maf_split_by_species.py b/lib/galaxy/tools/bundled/maf/maf_split_by_species.py similarity index 100% rename from tools/maf/maf_split_by_species.py rename to lib/galaxy/tools/bundled/maf/maf_split_by_species.py diff --git a/tools/maf/maf_split_by_species.xml b/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml similarity index 100% rename from tools/maf/maf_split_by_species.xml rename to lib/galaxy/tools/bundled/maf/maf_split_by_species.xml diff --git a/tools/maf/maf_stats.py b/lib/galaxy/tools/bundled/maf/maf_stats.py similarity index 100% rename from tools/maf/maf_stats.py rename to lib/galaxy/tools/bundled/maf/maf_stats.py diff --git a/tools/maf/maf_stats.xml b/lib/galaxy/tools/bundled/maf/maf_stats.xml similarity index 100% rename from tools/maf/maf_stats.xml rename to lib/galaxy/tools/bundled/maf/maf_stats.xml diff --git a/tools/maf/maf_thread_for_species.py b/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py similarity index 100% rename from tools/maf/maf_thread_for_species.py rename to lib/galaxy/tools/bundled/maf/maf_thread_for_species.py diff --git a/tools/maf/maf_thread_for_species.xml b/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml similarity index 100% rename from tools/maf/maf_thread_for_species.xml rename to lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml diff --git a/tools/maf/maf_to_bed.py b/lib/galaxy/tools/bundled/maf/maf_to_bed.py similarity index 100% rename from tools/maf/maf_to_bed.py rename to lib/galaxy/tools/bundled/maf/maf_to_bed.py diff --git a/tools/maf/maf_to_bed.xml b/lib/galaxy/tools/bundled/maf/maf_to_bed.xml similarity index 100% rename from tools/maf/maf_to_bed.xml rename to lib/galaxy/tools/bundled/maf/maf_to_bed.xml diff --git a/tools/maf/maf_to_bed_code.py b/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py similarity index 100% rename from tools/maf/maf_to_bed_code.py rename to lib/galaxy/tools/bundled/maf/maf_to_bed_code.py diff --git a/tools/maf/maf_to_fasta.xml b/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml similarity index 100% rename from tools/maf/maf_to_fasta.xml rename to lib/galaxy/tools/bundled/maf/maf_to_fasta.xml diff --git a/tools/maf/maf_to_fasta_concat.py b/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py similarity index 100% rename from tools/maf/maf_to_fasta_concat.py rename to lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py diff --git a/tools/maf/maf_to_fasta_multiple_sets.py b/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py similarity index 100% rename from tools/maf/maf_to_fasta_multiple_sets.py rename to lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py diff --git a/tools/maf/maf_to_interval.py b/lib/galaxy/tools/bundled/maf/maf_to_interval.py similarity index 100% rename from tools/maf/maf_to_interval.py rename to lib/galaxy/tools/bundled/maf/maf_to_interval.py diff --git a/tools/maf/maf_to_interval.xml b/lib/galaxy/tools/bundled/maf/maf_to_interval.xml similarity index 100% rename from tools/maf/maf_to_interval.xml rename to lib/galaxy/tools/bundled/maf/maf_to_interval.xml diff --git a/tools/maf/vcf_to_maf_customtrack.py b/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py similarity index 100% rename from tools/maf/vcf_to_maf_customtrack.py rename to lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py diff --git a/tools/maf/vcf_to_maf_customtrack.xml b/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml similarity index 100% rename from tools/maf/vcf_to_maf_customtrack.xml rename to lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml diff --git a/tools/meme/fimo.xml b/lib/galaxy/tools/bundled/meme/fimo.xml similarity index 100% rename from tools/meme/fimo.xml rename to lib/galaxy/tools/bundled/meme/fimo.xml diff --git a/tools/meme/fimo_wrapper.py b/lib/galaxy/tools/bundled/meme/fimo_wrapper.py similarity index 100% rename from tools/meme/fimo_wrapper.py rename to lib/galaxy/tools/bundled/meme/fimo_wrapper.py diff --git a/tools/meme/meme.xml b/lib/galaxy/tools/bundled/meme/meme.xml similarity index 100% rename from tools/meme/meme.xml rename to lib/galaxy/tools/bundled/meme/meme.xml diff --git a/tools/metag_tools/blat_wrapper.py b/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py similarity index 100% rename from tools/metag_tools/blat_wrapper.py rename to lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py diff --git a/tools/metag_tools/blat_wrapper.xml b/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml similarity index 100% rename from tools/metag_tools/blat_wrapper.xml rename to lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml diff --git a/tools/metag_tools/shrimp_color_wrapper.py b/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py similarity index 100% rename from tools/metag_tools/shrimp_color_wrapper.py rename to lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py diff --git a/tools/metag_tools/shrimp_color_wrapper.xml b/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml similarity index 100% rename from tools/metag_tools/shrimp_color_wrapper.xml rename to lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml diff --git a/tools/metag_tools/shrimp_wrapper.py b/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py similarity index 100% rename from tools/metag_tools/shrimp_wrapper.py rename to lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py diff --git a/tools/metag_tools/shrimp_wrapper.xml b/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml similarity index 100% rename from tools/metag_tools/shrimp_wrapper.xml rename to lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml diff --git a/tools/next_gen_conversion/bwa_solid2fastq_modified.pl b/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl similarity index 100% rename from tools/next_gen_conversion/bwa_solid2fastq_modified.pl rename to lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl diff --git a/tools/next_gen_conversion/fastq_conversions.py b/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py similarity index 100% rename from tools/next_gen_conversion/fastq_conversions.py rename to lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py diff --git a/tools/next_gen_conversion/fastq_conversions.xml b/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml similarity index 100% rename from tools/next_gen_conversion/fastq_conversions.xml rename to lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml diff --git a/tools/next_gen_conversion/fastq_gen_conv.py b/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py similarity index 100% rename from tools/next_gen_conversion/fastq_gen_conv.py rename to lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py diff --git a/tools/next_gen_conversion/fastq_gen_conv.xml b/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml similarity index 100% rename from tools/next_gen_conversion/fastq_gen_conv.xml rename to lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml diff --git a/tools/next_gen_conversion/solid2fastq.py b/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py similarity index 100% rename from tools/next_gen_conversion/solid2fastq.py rename to lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py diff --git a/tools/next_gen_conversion/solid2fastq.xml b/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml similarity index 100% rename from tools/next_gen_conversion/solid2fastq.xml rename to lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml diff --git a/tools/next_gen_conversion/solid_to_fastq.py b/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py similarity index 100% rename from tools/next_gen_conversion/solid_to_fastq.py rename to lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py diff --git a/tools/next_gen_conversion/solid_to_fastq.xml b/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml similarity index 100% rename from tools/next_gen_conversion/solid_to_fastq.xml rename to lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml diff --git a/tools/ngs_simulation/ngs_simulation.py b/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py similarity index 100% rename from tools/ngs_simulation/ngs_simulation.py rename to lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py diff --git a/tools/ngs_simulation/ngs_simulation.xml b/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml similarity index 100% rename from tools/ngs_simulation/ngs_simulation.xml rename to lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml diff --git a/tools/phenotype_association/BEAM2_wrapper.sh b/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh similarity index 100% rename from tools/phenotype_association/BEAM2_wrapper.sh rename to lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh diff --git a/tools/phenotype_association/beam.xml b/lib/galaxy/tools/bundled/phenotype_association/beam.xml similarity index 100% rename from tools/phenotype_association/beam.xml rename to lib/galaxy/tools/bundled/phenotype_association/beam.xml diff --git a/tools/phenotype_association/gpass.pl b/lib/galaxy/tools/bundled/phenotype_association/gpass.pl similarity index 100% rename from tools/phenotype_association/gpass.pl rename to lib/galaxy/tools/bundled/phenotype_association/gpass.pl diff --git a/tools/phenotype_association/gpass.xml b/lib/galaxy/tools/bundled/phenotype_association/gpass.xml similarity index 100% rename from tools/phenotype_association/gpass.xml rename to lib/galaxy/tools/bundled/phenotype_association/gpass.xml diff --git a/tools/phenotype_association/ldtools.xml b/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml similarity index 100% rename from tools/phenotype_association/ldtools.xml rename to lib/galaxy/tools/bundled/phenotype_association/ldtools.xml diff --git a/tools/phenotype_association/ldtools_wrapper.sh b/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh similarity index 100% rename from tools/phenotype_association/ldtools_wrapper.sh rename to lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh diff --git a/tools/phenotype_association/linkToDavid.pl b/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl similarity index 100% rename from tools/phenotype_association/linkToDavid.pl rename to lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl diff --git a/tools/phenotype_association/linkToDavid.xml b/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml similarity index 100% rename from tools/phenotype_association/linkToDavid.xml rename to lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml diff --git a/tools/phenotype_association/linkToGProfile.pl b/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl similarity index 100% rename from tools/phenotype_association/linkToGProfile.pl rename to lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl diff --git a/tools/phenotype_association/linkToGProfile.xml b/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml similarity index 100% rename from tools/phenotype_association/linkToGProfile.xml rename to lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml diff --git a/tools/phenotype_association/lped_to_geno.pl b/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl similarity index 100% rename from tools/phenotype_association/lped_to_geno.pl rename to lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl diff --git a/tools/phenotype_association/lps.xml b/lib/galaxy/tools/bundled/phenotype_association/lps.xml similarity index 100% rename from tools/phenotype_association/lps.xml rename to lib/galaxy/tools/bundled/phenotype_association/lps.xml diff --git a/tools/phenotype_association/lps_tool_wrapper.sh b/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh similarity index 100% rename from tools/phenotype_association/lps_tool_wrapper.sh rename to lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh diff --git a/tools/phenotype_association/master2gd_snp.pl b/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl similarity index 100% rename from tools/phenotype_association/master2gd_snp.pl rename to lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl diff --git a/tools/phenotype_association/master2gd_snp.xml b/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml similarity index 100% rename from tools/phenotype_association/master2gd_snp.xml rename to lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml diff --git a/tools/phenotype_association/master2pg.pl b/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl similarity index 100% rename from tools/phenotype_association/master2pg.pl rename to lib/galaxy/tools/bundled/phenotype_association/master2pg.pl diff --git a/tools/phenotype_association/master2pg.xml b/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml similarity index 100% rename from tools/phenotype_association/master2pg.xml rename to lib/galaxy/tools/bundled/phenotype_association/master2pg.xml diff --git a/tools/phenotype_association/mergeSnps.pl b/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl similarity index 100% rename from tools/phenotype_association/mergeSnps.pl rename to lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl diff --git a/tools/phenotype_association/pagetag.py b/lib/galaxy/tools/bundled/phenotype_association/pagetag.py similarity index 100% rename from tools/phenotype_association/pagetag.py rename to lib/galaxy/tools/bundled/phenotype_association/pagetag.py diff --git a/tools/phenotype_association/pass.xml b/lib/galaxy/tools/bundled/phenotype_association/pass.xml similarity index 100% rename from tools/phenotype_association/pass.xml rename to lib/galaxy/tools/bundled/phenotype_association/pass.xml diff --git a/tools/phenotype_association/pass_wrapper.sh b/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh similarity index 100% rename from tools/phenotype_association/pass_wrapper.sh rename to lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh diff --git a/tools/phenotype_association/senatag.py b/lib/galaxy/tools/bundled/phenotype_association/senatag.py similarity index 100% rename from tools/phenotype_association/senatag.py rename to lib/galaxy/tools/bundled/phenotype_association/senatag.py diff --git a/tools/phenotype_association/sift.xml b/lib/galaxy/tools/bundled/phenotype_association/sift.xml similarity index 100% rename from tools/phenotype_association/sift.xml rename to lib/galaxy/tools/bundled/phenotype_association/sift.xml diff --git a/tools/phenotype_association/sift_variants_wrapper.sh b/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh similarity index 100% rename from tools/phenotype_association/sift_variants_wrapper.sh rename to lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh diff --git a/tools/phenotype_association/vcf2pgSnpMult.pl b/lib/galaxy/tools/bundled/phenotype_association/vcf2pgSnpMult.pl similarity index 100% rename from tools/phenotype_association/vcf2pgSnpMult.pl rename to lib/galaxy/tools/bundled/phenotype_association/vcf2pgSnpMult.pl diff --git a/tools/plotting/bar_chart.py b/lib/galaxy/tools/bundled/plotting/bar_chart.py similarity index 100% rename from tools/plotting/bar_chart.py rename to lib/galaxy/tools/bundled/plotting/bar_chart.py diff --git a/tools/plotting/bar_chart.xml b/lib/galaxy/tools/bundled/plotting/bar_chart.xml similarity index 100% rename from tools/plotting/bar_chart.xml rename to lib/galaxy/tools/bundled/plotting/bar_chart.xml diff --git a/tools/plotting/boxplot.xml b/lib/galaxy/tools/bundled/plotting/boxplot.xml similarity index 100% rename from tools/plotting/boxplot.xml rename to lib/galaxy/tools/bundled/plotting/boxplot.xml diff --git a/tools/solid_tools/maq_cs_wrapper.py b/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py similarity index 100% rename from tools/solid_tools/maq_cs_wrapper.py rename to lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py diff --git a/tools/solid_tools/maq_cs_wrapper.xml b/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml similarity index 100% rename from tools/solid_tools/maq_cs_wrapper.xml rename to lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml diff --git a/tools/solid_tools/maq_cs_wrapper_code.py b/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py similarity index 100% rename from tools/solid_tools/maq_cs_wrapper_code.py rename to lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py diff --git a/tools/solid_tools/qualsolid_boxplot_graph.sh b/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh similarity index 100% rename from tools/solid_tools/qualsolid_boxplot_graph.sh rename to lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh diff --git a/tools/solid_tools/solid_qual_boxplot.xml b/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml similarity index 100% rename from tools/solid_tools/solid_qual_boxplot.xml rename to lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml diff --git a/tools/solid_tools/solid_qual_stats.py b/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py similarity index 100% rename from tools/solid_tools/solid_qual_stats.py rename to lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py diff --git a/tools/solid_tools/solid_qual_stats.xml b/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml similarity index 100% rename from tools/solid_tools/solid_qual_stats.xml rename to lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml diff --git a/tools/sr_assembly/velvetg.xml b/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml similarity index 100% rename from tools/sr_assembly/velvetg.xml rename to lib/galaxy/tools/bundled/sr_assembly/velvetg.xml diff --git a/tools/sr_assembly/velvetg_wrapper.py b/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py similarity index 100% rename from tools/sr_assembly/velvetg_wrapper.py rename to lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py diff --git a/tools/sr_assembly/velveth.xml b/lib/galaxy/tools/bundled/sr_assembly/velveth.xml similarity index 100% rename from tools/sr_assembly/velveth.xml rename to lib/galaxy/tools/bundled/sr_assembly/velveth.xml diff --git a/tools/sr_assembly/velveth_wrapper.py b/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py similarity index 100% rename from tools/sr_assembly/velveth_wrapper.py rename to lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py diff --git a/tools/sr_mapping/PerM.xml b/lib/galaxy/tools/bundled/sr_mapping/PerM.xml similarity index 100% rename from tools/sr_mapping/PerM.xml rename to lib/galaxy/tools/bundled/sr_mapping/PerM.xml diff --git a/tools/sr_mapping/bfast_wrapper.py b/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py similarity index 100% rename from tools/sr_mapping/bfast_wrapper.py rename to lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py diff --git a/tools/sr_mapping/bfast_wrapper.xml b/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml similarity index 100% rename from tools/sr_mapping/bfast_wrapper.xml rename to lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml diff --git a/tools/sr_mapping/fastq_statistics.xml b/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml similarity index 100% rename from tools/sr_mapping/fastq_statistics.xml rename to lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml diff --git a/tools/sr_mapping/mosaik.xml b/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml similarity index 100% rename from tools/sr_mapping/mosaik.xml rename to lib/galaxy/tools/bundled/sr_mapping/mosaik.xml diff --git a/tools/sr_mapping/srma_wrapper.py b/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py similarity index 100% rename from tools/sr_mapping/srma_wrapper.py rename to lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py diff --git a/tools/sr_mapping/srma_wrapper.xml b/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml similarity index 100% rename from tools/sr_mapping/srma_wrapper.xml rename to lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml diff --git a/tools/stats/aggregate_binned_scores_in_intervals.xml b/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml similarity index 100% rename from tools/stats/aggregate_binned_scores_in_intervals.xml rename to lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml diff --git a/tools/stats/aggregate_scores_in_intervals.py b/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py similarity index 100% rename from tools/stats/aggregate_scores_in_intervals.py rename to lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py diff --git a/tools/stats/filtering.py b/lib/galaxy/tools/bundled/stats/filtering.py similarity index 100% rename from tools/stats/filtering.py rename to lib/galaxy/tools/bundled/stats/filtering.py diff --git a/tools/stats/filtering.xml b/lib/galaxy/tools/bundled/stats/filtering.xml similarity index 100% rename from tools/stats/filtering.xml rename to lib/galaxy/tools/bundled/stats/filtering.xml diff --git a/tools/stats/grouping.py b/lib/galaxy/tools/bundled/stats/grouping.py similarity index 100% rename from tools/stats/grouping.py rename to lib/galaxy/tools/bundled/stats/grouping.py diff --git a/tools/stats/grouping.xml b/lib/galaxy/tools/bundled/stats/grouping.xml similarity index 100% rename from tools/stats/grouping.xml rename to lib/galaxy/tools/bundled/stats/grouping.xml diff --git a/tools/stats/gsummary.py b/lib/galaxy/tools/bundled/stats/gsummary.py similarity index 100% rename from tools/stats/gsummary.py rename to lib/galaxy/tools/bundled/stats/gsummary.py diff --git a/tools/stats/gsummary.xml b/lib/galaxy/tools/bundled/stats/gsummary.xml similarity index 100% rename from tools/stats/gsummary.xml rename to lib/galaxy/tools/bundled/stats/gsummary.xml diff --git a/tools/stats/gsummary.xml.groups b/lib/galaxy/tools/bundled/stats/gsummary.xml.groups similarity index 100% rename from tools/stats/gsummary.xml.groups rename to lib/galaxy/tools/bundled/stats/gsummary.xml.groups diff --git a/tools/stats/r_wrapper.sh b/lib/galaxy/tools/bundled/stats/r_wrapper.sh similarity index 100% rename from tools/stats/r_wrapper.sh rename to lib/galaxy/tools/bundled/stats/r_wrapper.sh diff --git a/tools/visualization/LAJ.py b/lib/galaxy/tools/bundled/visualization/LAJ.py similarity index 100% rename from tools/visualization/LAJ.py rename to lib/galaxy/tools/bundled/visualization/LAJ.py diff --git a/tools/visualization/LAJ.xml b/lib/galaxy/tools/bundled/visualization/LAJ.xml similarity index 100% rename from tools/visualization/LAJ.xml rename to lib/galaxy/tools/bundled/visualization/LAJ.xml diff --git a/tools/visualization/LAJ_code.py b/lib/galaxy/tools/bundled/visualization/LAJ_code.py similarity index 100% rename from tools/visualization/LAJ_code.py rename to lib/galaxy/tools/bundled/visualization/LAJ_code.py diff --git a/static/images/Armitagep_manhattan.png b/lib/galaxy/web/framework/static/images/Armitagep_manhattan.png similarity index 100% rename from static/images/Armitagep_manhattan.png rename to lib/galaxy/web/framework/static/images/Armitagep_manhattan.png diff --git a/static/images/Armitagep_qqplot.png b/lib/galaxy/web/framework/static/images/Armitagep_qqplot.png similarity index 100% rename from static/images/Armitagep_qqplot.png rename to lib/galaxy/web/framework/static/images/Armitagep_qqplot.png diff --git a/static/images/add_icon.png b/lib/galaxy/web/framework/static/images/add_icon.png similarity index 100% rename from static/images/add_icon.png rename to lib/galaxy/web/framework/static/images/add_icon.png diff --git a/static/images/add_icon_dark.png b/lib/galaxy/web/framework/static/images/add_icon_dark.png similarity index 100% rename from static/images/add_icon_dark.png rename to lib/galaxy/web/framework/static/images/add_icon_dark.png diff --git a/static/images/aggregate_history1.png b/lib/galaxy/web/framework/static/images/aggregate_history1.png similarity index 100% rename from static/images/aggregate_history1.png rename to lib/galaxy/web/framework/static/images/aggregate_history1.png diff --git a/static/images/aggregate_history2.png b/lib/galaxy/web/framework/static/images/aggregate_history2.png similarity index 100% rename from static/images/aggregate_history2.png rename to lib/galaxy/web/framework/static/images/aggregate_history2.png diff --git a/static/images/bar_chart.png b/lib/galaxy/web/framework/static/images/bar_chart.png similarity index 100% rename from static/images/bar_chart.png rename to lib/galaxy/web/framework/static/images/bar_chart.png diff --git a/static/images/bed_warn.png b/lib/galaxy/web/framework/static/images/bed_warn.png similarity index 100% rename from static/images/bed_warn.png rename to lib/galaxy/web/framework/static/images/bed_warn.png diff --git a/static/images/closebox.png b/lib/galaxy/web/framework/static/images/closebox.png similarity index 100% rename from static/images/closebox.png rename to lib/galaxy/web/framework/static/images/closebox.png diff --git a/static/images/dat_points_table_brows_1.png b/lib/galaxy/web/framework/static/images/dat_points_table_brows_1.png similarity index 100% rename from static/images/dat_points_table_brows_1.png rename to lib/galaxy/web/framework/static/images/dat_points_table_brows_1.png diff --git a/static/images/ddarrowsplit.png b/lib/galaxy/web/framework/static/images/ddarrowsplit.png similarity index 100% rename from static/images/ddarrowsplit.png rename to lib/galaxy/web/framework/static/images/ddarrowsplit.png diff --git a/static/images/delete.gif b/lib/galaxy/web/framework/static/images/delete.gif similarity index 100% rename from static/images/delete.gif rename to lib/galaxy/web/framework/static/images/delete.gif diff --git a/static/images/delete_tag_icon_gray.png b/lib/galaxy/web/framework/static/images/delete_tag_icon_gray.png similarity index 100% rename from static/images/delete_tag_icon_gray.png rename to lib/galaxy/web/framework/static/images/delete_tag_icon_gray.png diff --git a/static/images/delete_tag_icon_white.png b/lib/galaxy/web/framework/static/images/delete_tag_icon_white.png similarity index 100% rename from static/images/delete_tag_icon_white.png rename to lib/galaxy/web/framework/static/images/delete_tag_icon_white.png diff --git a/static/images/documents-stack-faded.png b/lib/galaxy/web/framework/static/images/documents-stack-faded.png similarity index 100% rename from static/images/documents-stack-faded.png rename to lib/galaxy/web/framework/static/images/documents-stack-faded.png diff --git a/static/images/documents-stack.png b/lib/galaxy/web/framework/static/images/documents-stack.png similarity index 100% rename from static/images/documents-stack.png rename to lib/galaxy/web/framework/static/images/documents-stack.png diff --git a/static/images/dropdownarrow.png b/lib/galaxy/web/framework/static/images/dropdownarrow.png similarity index 100% rename from static/images/dropdownarrow.png rename to lib/galaxy/web/framework/static/images/dropdownarrow.png diff --git a/static/images/dw.gif b/lib/galaxy/web/framework/static/images/dw.gif similarity index 100% rename from static/images/dw.gif rename to lib/galaxy/web/framework/static/images/dw.gif diff --git a/static/images/fetchTax.png b/lib/galaxy/web/framework/static/images/fetchTax.png similarity index 100% rename from static/images/fetchTax.png rename to lib/galaxy/web/framework/static/images/fetchTax.png diff --git a/static/images/fonts/fontawesome-webfont.eot b/lib/galaxy/web/framework/static/images/fonts/fontawesome-webfont.eot similarity index 100% rename from static/images/fonts/fontawesome-webfont.eot rename to lib/galaxy/web/framework/static/images/fonts/fontawesome-webfont.eot diff --git a/static/images/fonts/fontawesome-webfont.ttf b/lib/galaxy/web/framework/static/images/fonts/fontawesome-webfont.ttf similarity index 100% rename from static/images/fonts/fontawesome-webfont.ttf rename to lib/galaxy/web/framework/static/images/fonts/fontawesome-webfont.ttf diff --git a/static/images/fonts/fontawesome-webfont.woff b/lib/galaxy/web/framework/static/images/fonts/fontawesome-webfont.woff similarity index 100% rename from static/images/fonts/fontawesome-webfont.woff rename to lib/galaxy/web/framework/static/images/fonts/fontawesome-webfont.woff diff --git a/static/images/fonts/iconic_stroke.eot b/lib/galaxy/web/framework/static/images/fonts/iconic_stroke.eot similarity index 100% rename from static/images/fonts/iconic_stroke.eot rename to lib/galaxy/web/framework/static/images/fonts/iconic_stroke.eot diff --git a/static/images/fonts/iconic_stroke.otf b/lib/galaxy/web/framework/static/images/fonts/iconic_stroke.otf similarity index 100% rename from static/images/fonts/iconic_stroke.otf rename to lib/galaxy/web/framework/static/images/fonts/iconic_stroke.otf diff --git a/static/images/fonts/iconic_stroke.svg b/lib/galaxy/web/framework/static/images/fonts/iconic_stroke.svg similarity index 100% rename from static/images/fonts/iconic_stroke.svg rename to lib/galaxy/web/framework/static/images/fonts/iconic_stroke.svg diff --git a/static/images/fonts/iconic_stroke.ttf b/lib/galaxy/web/framework/static/images/fonts/iconic_stroke.ttf similarity index 100% rename from static/images/fonts/iconic_stroke.ttf rename to lib/galaxy/web/framework/static/images/fonts/iconic_stroke.ttf diff --git a/static/images/fugue/application-dock-270-bw.png b/lib/galaxy/web/framework/static/images/fugue/application-dock-270-bw.png similarity index 100% rename from static/images/fugue/application-dock-270-bw.png rename to lib/galaxy/web/framework/static/images/fugue/application-dock-270-bw.png diff --git a/static/images/fugue/application-dock-270.png b/lib/galaxy/web/framework/static/images/fugue/application-dock-270.png similarity index 100% rename from static/images/fugue/application-dock-270.png rename to lib/galaxy/web/framework/static/images/fugue/application-dock-270.png diff --git a/static/images/fugue/arrow-000-small-bw.png b/lib/galaxy/web/framework/static/images/fugue/arrow-000-small-bw.png similarity index 100% rename from static/images/fugue/arrow-000-small-bw.png rename to lib/galaxy/web/framework/static/images/fugue/arrow-000-small-bw.png diff --git a/static/images/fugue/arrow-090.png b/lib/galaxy/web/framework/static/images/fugue/arrow-090.png similarity index 100% rename from static/images/fugue/arrow-090.png rename to lib/galaxy/web/framework/static/images/fugue/arrow-090.png diff --git a/static/images/fugue/arrow-circle.png b/lib/galaxy/web/framework/static/images/fugue/arrow-circle.png similarity index 100% rename from static/images/fugue/arrow-circle.png rename to lib/galaxy/web/framework/static/images/fugue/arrow-circle.png diff --git a/static/images/fugue/arrow-resize-090-bw.png b/lib/galaxy/web/framework/static/images/fugue/arrow-resize-090-bw.png similarity index 100% rename from static/images/fugue/arrow-resize-090-bw.png rename to lib/galaxy/web/framework/static/images/fugue/arrow-resize-090-bw.png diff --git a/static/images/fugue/arrow-resize-090.png b/lib/galaxy/web/framework/static/images/fugue/arrow-resize-090.png similarity index 100% rename from static/images/fugue/arrow-resize-090.png rename to lib/galaxy/web/framework/static/images/fugue/arrow-resize-090.png diff --git a/static/images/fugue/arrow-split-bw.png b/lib/galaxy/web/framework/static/images/fugue/arrow-split-bw.png similarity index 100% rename from static/images/fugue/arrow-split-bw.png rename to lib/galaxy/web/framework/static/images/fugue/arrow-split-bw.png diff --git a/static/images/fugue/arrow-split.png b/lib/galaxy/web/framework/static/images/fugue/arrow-split.png similarity index 100% rename from static/images/fugue/arrow-split.png rename to lib/galaxy/web/framework/static/images/fugue/arrow-split.png diff --git a/static/images/fugue/arrow-transition-270-bw.png b/lib/galaxy/web/framework/static/images/fugue/arrow-transition-270-bw.png similarity index 100% rename from static/images/fugue/arrow-transition-270-bw.png rename to lib/galaxy/web/framework/static/images/fugue/arrow-transition-270-bw.png diff --git a/static/images/fugue/arrow-transition-bw.png b/lib/galaxy/web/framework/static/images/fugue/arrow-transition-bw.png similarity index 100% rename from static/images/fugue/arrow-transition-bw.png rename to lib/galaxy/web/framework/static/images/fugue/arrow-transition-bw.png diff --git a/static/images/fugue/asterisk-small-outline.png b/lib/galaxy/web/framework/static/images/fugue/asterisk-small-outline.png similarity index 100% rename from static/images/fugue/asterisk-small-outline.png rename to lib/galaxy/web/framework/static/images/fugue/asterisk-small-outline.png diff --git a/static/images/fugue/asterisk-small-yellow.png b/lib/galaxy/web/framework/static/images/fugue/asterisk-small-yellow.png similarity index 100% rename from static/images/fugue/asterisk-small-yellow.png rename to lib/galaxy/web/framework/static/images/fugue/asterisk-small-yellow.png diff --git a/static/images/fugue/asterisk-small.png b/lib/galaxy/web/framework/static/images/fugue/asterisk-small.png similarity index 100% rename from static/images/fugue/asterisk-small.png rename to lib/galaxy/web/framework/static/images/fugue/asterisk-small.png diff --git a/static/images/fugue/block--plus-bw.png b/lib/galaxy/web/framework/static/images/fugue/block--plus-bw.png similarity index 100% rename from static/images/fugue/block--plus-bw.png rename to lib/galaxy/web/framework/static/images/fugue/block--plus-bw.png diff --git a/static/images/fugue/block--plus.png b/lib/galaxy/web/framework/static/images/fugue/block--plus.png similarity index 100% rename from static/images/fugue/block--plus.png rename to lib/galaxy/web/framework/static/images/fugue/block--plus.png diff --git a/static/images/fugue/bookmarks-bw.png b/lib/galaxy/web/framework/static/images/fugue/bookmarks-bw.png similarity index 100% rename from static/images/fugue/bookmarks-bw.png rename to lib/galaxy/web/framework/static/images/fugue/bookmarks-bw.png diff --git a/static/images/fugue/bookmarks.png b/lib/galaxy/web/framework/static/images/fugue/bookmarks.png similarity index 100% rename from static/images/fugue/bookmarks.png rename to lib/galaxy/web/framework/static/images/fugue/bookmarks.png diff --git a/static/images/fugue/bug.png b/lib/galaxy/web/framework/static/images/fugue/bug.png similarity index 100% rename from static/images/fugue/bug.png rename to lib/galaxy/web/framework/static/images/fugue/bug.png diff --git a/static/images/fugue/chart.png b/lib/galaxy/web/framework/static/images/fugue/chart.png similarity index 100% rename from static/images/fugue/chart.png rename to lib/galaxy/web/framework/static/images/fugue/chart.png diff --git a/static/images/fugue/chevron-expand-bw.png b/lib/galaxy/web/framework/static/images/fugue/chevron-expand-bw.png similarity index 100% rename from static/images/fugue/chevron-expand-bw.png rename to lib/galaxy/web/framework/static/images/fugue/chevron-expand-bw.png diff --git a/static/images/fugue/chevron-expand.png b/lib/galaxy/web/framework/static/images/fugue/chevron-expand.png similarity index 100% rename from static/images/fugue/chevron-expand.png rename to lib/galaxy/web/framework/static/images/fugue/chevron-expand.png diff --git a/static/images/fugue/chevron.png b/lib/galaxy/web/framework/static/images/fugue/chevron.png similarity index 100% rename from static/images/fugue/chevron.png rename to lib/galaxy/web/framework/static/images/fugue/chevron.png diff --git a/static/images/fugue/control-270.png b/lib/galaxy/web/framework/static/images/fugue/control-270.png similarity index 100% rename from static/images/fugue/control-270.png rename to lib/galaxy/web/framework/static/images/fugue/control-270.png diff --git a/static/images/fugue/cross-button.png b/lib/galaxy/web/framework/static/images/fugue/cross-button.png similarity index 100% rename from static/images/fugue/cross-button.png rename to lib/galaxy/web/framework/static/images/fugue/cross-button.png diff --git a/static/images/fugue/cross-circle-bw.png b/lib/galaxy/web/framework/static/images/fugue/cross-circle-bw.png similarity index 100% rename from static/images/fugue/cross-circle-bw.png rename to lib/galaxy/web/framework/static/images/fugue/cross-circle-bw.png diff --git a/static/images/fugue/cross-circle.png b/lib/galaxy/web/framework/static/images/fugue/cross-circle.png similarity index 100% rename from static/images/fugue/cross-circle.png rename to lib/galaxy/web/framework/static/images/fugue/cross-circle.png diff --git a/static/images/fugue/cross-small-bw.png b/lib/galaxy/web/framework/static/images/fugue/cross-small-bw.png similarity index 100% rename from static/images/fugue/cross-small-bw.png rename to lib/galaxy/web/framework/static/images/fugue/cross-small-bw.png diff --git a/static/images/fugue/cross.png b/lib/galaxy/web/framework/static/images/fugue/cross.png similarity index 100% rename from static/images/fugue/cross.png rename to lib/galaxy/web/framework/static/images/fugue/cross.png diff --git a/static/images/fugue/disk--arrow-bw.png b/lib/galaxy/web/framework/static/images/fugue/disk--arrow-bw.png similarity index 100% rename from static/images/fugue/disk--arrow-bw.png rename to lib/galaxy/web/framework/static/images/fugue/disk--arrow-bw.png diff --git a/static/images/fugue/disk--arrow.png b/lib/galaxy/web/framework/static/images/fugue/disk--arrow.png similarity index 100% rename from static/images/fugue/disk--arrow.png rename to lib/galaxy/web/framework/static/images/fugue/disk--arrow.png diff --git a/static/images/fugue/disk.png b/lib/galaxy/web/framework/static/images/fugue/disk.png similarity index 100% rename from static/images/fugue/disk.png rename to lib/galaxy/web/framework/static/images/fugue/disk.png diff --git a/static/images/fugue/exclamation.png b/lib/galaxy/web/framework/static/images/fugue/exclamation.png similarity index 100% rename from static/images/fugue/exclamation.png rename to lib/galaxy/web/framework/static/images/fugue/exclamation.png diff --git a/static/images/fugue/external.png b/lib/galaxy/web/framework/static/images/fugue/external.png similarity index 100% rename from static/images/fugue/external.png rename to lib/galaxy/web/framework/static/images/fugue/external.png diff --git a/static/images/fugue/eye.png b/lib/galaxy/web/framework/static/images/fugue/eye.png similarity index 100% rename from static/images/fugue/eye.png rename to lib/galaxy/web/framework/static/images/fugue/eye.png diff --git a/static/images/fugue/gear-bw.png b/lib/galaxy/web/framework/static/images/fugue/gear-bw.png similarity index 100% rename from static/images/fugue/gear-bw.png rename to lib/galaxy/web/framework/static/images/fugue/gear-bw.png diff --git a/static/images/fugue/gear.png b/lib/galaxy/web/framework/static/images/fugue/gear.png similarity index 100% rename from static/images/fugue/gear.png rename to lib/galaxy/web/framework/static/images/fugue/gear.png diff --git a/static/images/fugue/globe-bw.png b/lib/galaxy/web/framework/static/images/fugue/globe-bw.png similarity index 100% rename from static/images/fugue/globe-bw.png rename to lib/galaxy/web/framework/static/images/fugue/globe-bw.png diff --git a/static/images/fugue/globe.png b/lib/galaxy/web/framework/static/images/fugue/globe.png similarity index 100% rename from static/images/fugue/globe.png rename to lib/galaxy/web/framework/static/images/fugue/globe.png diff --git a/static/images/fugue/hammer-bw.png b/lib/galaxy/web/framework/static/images/fugue/hammer-bw.png similarity index 100% rename from static/images/fugue/hammer-bw.png rename to lib/galaxy/web/framework/static/images/fugue/hammer-bw.png diff --git a/static/images/fugue/hammer.png b/lib/galaxy/web/framework/static/images/fugue/hammer.png similarity index 100% rename from static/images/fugue/hammer.png rename to lib/galaxy/web/framework/static/images/fugue/hammer.png diff --git a/static/images/fugue/information-white.png b/lib/galaxy/web/framework/static/images/fugue/information-white.png similarity index 100% rename from static/images/fugue/information-white.png rename to lib/galaxy/web/framework/static/images/fugue/information-white.png diff --git a/static/images/fugue/layer-transparent-bw.png b/lib/galaxy/web/framework/static/images/fugue/layer-transparent-bw.png similarity index 100% rename from static/images/fugue/layer-transparent-bw.png rename to lib/galaxy/web/framework/static/images/fugue/layer-transparent-bw.png diff --git a/static/images/fugue/layer-transparent.png b/lib/galaxy/web/framework/static/images/fugue/layer-transparent.png similarity index 100% rename from static/images/fugue/layer-transparent.png rename to lib/galaxy/web/framework/static/images/fugue/layer-transparent.png diff --git a/static/images/fugue/layers-stack-bw.png b/lib/galaxy/web/framework/static/images/fugue/layers-stack-bw.png similarity index 100% rename from static/images/fugue/layers-stack-bw.png rename to lib/galaxy/web/framework/static/images/fugue/layers-stack-bw.png diff --git a/static/images/fugue/layers-stack.png b/lib/galaxy/web/framework/static/images/fugue/layers-stack.png similarity index 100% rename from static/images/fugue/layers-stack.png rename to lib/galaxy/web/framework/static/images/fugue/layers-stack.png diff --git a/static/images/fugue/magnifier-left.png b/lib/galaxy/web/framework/static/images/fugue/magnifier-left.png similarity index 100% rename from static/images/fugue/magnifier-left.png rename to lib/galaxy/web/framework/static/images/fugue/magnifier-left.png diff --git a/static/images/fugue/magnifier-zoom-out.png b/lib/galaxy/web/framework/static/images/fugue/magnifier-zoom-out.png similarity index 100% rename from static/images/fugue/magnifier-zoom-out.png rename to lib/galaxy/web/framework/static/images/fugue/magnifier-zoom-out.png diff --git a/static/images/fugue/magnifier-zoom.png b/lib/galaxy/web/framework/static/images/fugue/magnifier-zoom.png similarity index 100% rename from static/images/fugue/magnifier-zoom.png rename to lib/galaxy/web/framework/static/images/fugue/magnifier-zoom.png diff --git a/static/images/fugue/navigation.png b/lib/galaxy/web/framework/static/images/fugue/navigation.png similarity index 100% rename from static/images/fugue/navigation.png rename to lib/galaxy/web/framework/static/images/fugue/navigation.png diff --git a/static/images/fugue/pencil-small.png b/lib/galaxy/web/framework/static/images/fugue/pencil-small.png similarity index 100% rename from static/images/fugue/pencil-small.png rename to lib/galaxy/web/framework/static/images/fugue/pencil-small.png diff --git a/static/images/fugue/pencil.png b/lib/galaxy/web/framework/static/images/fugue/pencil.png similarity index 100% rename from static/images/fugue/pencil.png rename to lib/galaxy/web/framework/static/images/fugue/pencil.png diff --git a/static/images/fugue/plus-button-bw.png b/lib/galaxy/web/framework/static/images/fugue/plus-button-bw.png similarity index 100% rename from static/images/fugue/plus-button-bw.png rename to lib/galaxy/web/framework/static/images/fugue/plus-button-bw.png diff --git a/static/images/fugue/plus-button.png b/lib/galaxy/web/framework/static/images/fugue/plus-button.png similarity index 100% rename from static/images/fugue/plus-button.png rename to lib/galaxy/web/framework/static/images/fugue/plus-button.png diff --git a/static/images/fugue/plus-circle.png b/lib/galaxy/web/framework/static/images/fugue/plus-circle.png similarity index 100% rename from static/images/fugue/plus-circle.png rename to lib/galaxy/web/framework/static/images/fugue/plus-circle.png diff --git a/static/images/fugue/sticky-note-text.png b/lib/galaxy/web/framework/static/images/fugue/sticky-note-text.png similarity index 100% rename from static/images/fugue/sticky-note-text.png rename to lib/galaxy/web/framework/static/images/fugue/sticky-note-text.png diff --git a/static/images/fugue/tag--plus.png b/lib/galaxy/web/framework/static/images/fugue/tag--plus.png similarity index 100% rename from static/images/fugue/tag--plus.png rename to lib/galaxy/web/framework/static/images/fugue/tag--plus.png diff --git a/static/images/fugue/tag-label.png b/lib/galaxy/web/framework/static/images/fugue/tag-label.png similarity index 100% rename from static/images/fugue/tag-label.png rename to lib/galaxy/web/framework/static/images/fugue/tag-label.png diff --git a/static/images/fugue/tags.png b/lib/galaxy/web/framework/static/images/fugue/tags.png similarity index 100% rename from static/images/fugue/tags.png rename to lib/galaxy/web/framework/static/images/fugue/tags.png diff --git a/static/images/fugue/toggle-bw.png b/lib/galaxy/web/framework/static/images/fugue/toggle-bw.png similarity index 100% rename from static/images/fugue/toggle-bw.png rename to lib/galaxy/web/framework/static/images/fugue/toggle-bw.png diff --git a/static/images/fugue/toggle-expand-bw.png b/lib/galaxy/web/framework/static/images/fugue/toggle-expand-bw.png similarity index 100% rename from static/images/fugue/toggle-expand-bw.png rename to lib/galaxy/web/framework/static/images/fugue/toggle-expand-bw.png diff --git a/static/images/fugue/toggle-expand.png b/lib/galaxy/web/framework/static/images/fugue/toggle-expand.png similarity index 100% rename from static/images/fugue/toggle-expand.png rename to lib/galaxy/web/framework/static/images/fugue/toggle-expand.png diff --git a/static/images/fugue/toggle.png b/lib/galaxy/web/framework/static/images/fugue/toggle.png similarity index 100% rename from static/images/fugue/toggle.png rename to lib/galaxy/web/framework/static/images/fugue/toggle.png diff --git a/static/images/fugue/toolbox-bw.png b/lib/galaxy/web/framework/static/images/fugue/toolbox-bw.png similarity index 100% rename from static/images/fugue/toolbox-bw.png rename to lib/galaxy/web/framework/static/images/fugue/toolbox-bw.png diff --git a/static/images/fugue/toolbox.png b/lib/galaxy/web/framework/static/images/fugue/toolbox.png similarity index 100% rename from static/images/fugue/toolbox.png rename to lib/galaxy/web/framework/static/images/fugue/toolbox.png diff --git a/static/images/fugue/ui-slider-050-bw.png b/lib/galaxy/web/framework/static/images/fugue/ui-slider-050-bw.png similarity index 100% rename from static/images/fugue/ui-slider-050-bw.png rename to lib/galaxy/web/framework/static/images/fugue/ui-slider-050-bw.png diff --git a/static/images/fugue/ui-slider-050.png b/lib/galaxy/web/framework/static/images/fugue/ui-slider-050.png similarity index 100% rename from static/images/fugue/ui-slider-050.png rename to lib/galaxy/web/framework/static/images/fugue/ui-slider-050.png diff --git a/static/images/galaxyIcon_noText.png b/lib/galaxy/web/framework/static/images/galaxyIcon_noText.png similarity index 100% rename from static/images/galaxyIcon_noText.png rename to lib/galaxy/web/framework/static/images/galaxyIcon_noText.png diff --git a/static/images/hatch-023858.png b/lib/galaxy/web/framework/static/images/hatch-023858.png similarity index 100% rename from static/images/hatch-023858.png rename to lib/galaxy/web/framework/static/images/hatch-023858.png diff --git a/static/images/hatch-fade-023858.gif b/lib/galaxy/web/framework/static/images/hatch-fade-023858.gif similarity index 100% rename from static/images/hatch-fade-023858.gif rename to lib/galaxy/web/framework/static/images/hatch-fade-023858.gif diff --git a/static/images/histogram.png b/lib/galaxy/web/framework/static/images/histogram.png similarity index 100% rename from static/images/histogram.png rename to lib/galaxy/web/framework/static/images/histogram.png diff --git a/static/images/histogram2.png b/lib/galaxy/web/framework/static/images/histogram2.png similarity index 100% rename from static/images/histogram2.png rename to lib/galaxy/web/framework/static/images/histogram2.png diff --git a/static/images/history-buttons/delete_icon.png b/lib/galaxy/web/framework/static/images/history-buttons/delete_icon.png similarity index 100% rename from static/images/history-buttons/delete_icon.png rename to lib/galaxy/web/framework/static/images/history-buttons/delete_icon.png diff --git a/static/images/history-buttons/delete_icon_dark.png b/lib/galaxy/web/framework/static/images/history-buttons/delete_icon_dark.png similarity index 100% rename from static/images/history-buttons/delete_icon_dark.png rename to lib/galaxy/web/framework/static/images/history-buttons/delete_icon_dark.png diff --git a/static/images/history-buttons/delete_icon_grey.png b/lib/galaxy/web/framework/static/images/history-buttons/delete_icon_grey.png similarity index 100% rename from static/images/history-buttons/delete_icon_grey.png rename to lib/galaxy/web/framework/static/images/history-buttons/delete_icon_grey.png diff --git a/static/images/history-buttons/eye_icon.png b/lib/galaxy/web/framework/static/images/history-buttons/eye_icon.png similarity index 100% rename from static/images/history-buttons/eye_icon.png rename to lib/galaxy/web/framework/static/images/history-buttons/eye_icon.png diff --git a/static/images/history-buttons/eye_icon_dark.png b/lib/galaxy/web/framework/static/images/history-buttons/eye_icon_dark.png similarity index 100% rename from static/images/history-buttons/eye_icon_dark.png rename to lib/galaxy/web/framework/static/images/history-buttons/eye_icon_dark.png diff --git a/static/images/history-buttons/eye_icon_grey.png b/lib/galaxy/web/framework/static/images/history-buttons/eye_icon_grey.png similarity index 100% rename from static/images/history-buttons/eye_icon_grey.png rename to lib/galaxy/web/framework/static/images/history-buttons/eye_icon_grey.png diff --git a/static/images/history-buttons/pencil_icon.png b/lib/galaxy/web/framework/static/images/history-buttons/pencil_icon.png similarity index 100% rename from static/images/history-buttons/pencil_icon.png rename to lib/galaxy/web/framework/static/images/history-buttons/pencil_icon.png diff --git a/static/images/history-buttons/pencil_icon_dark.png b/lib/galaxy/web/framework/static/images/history-buttons/pencil_icon_dark.png similarity index 100% rename from static/images/history-buttons/pencil_icon_dark.png rename to lib/galaxy/web/framework/static/images/history-buttons/pencil_icon_dark.png diff --git a/static/images/history-buttons/pencil_icon_grey.png b/lib/galaxy/web/framework/static/images/history-buttons/pencil_icon_grey.png similarity index 100% rename from static/images/history-buttons/pencil_icon_grey.png rename to lib/galaxy/web/framework/static/images/history-buttons/pencil_icon_grey.png diff --git a/static/images/history-states/data_empty.png b/lib/galaxy/web/framework/static/images/history-states/data_empty.png similarity index 100% rename from static/images/history-states/data_empty.png rename to lib/galaxy/web/framework/static/images/history-states/data_empty.png diff --git a/static/images/history-states/data_error.png b/lib/galaxy/web/framework/static/images/history-states/data_error.png similarity index 100% rename from static/images/history-states/data_error.png rename to lib/galaxy/web/framework/static/images/history-states/data_error.png diff --git a/static/images/history-states/data_ok.png b/lib/galaxy/web/framework/static/images/history-states/data_ok.png similarity index 100% rename from static/images/history-states/data_ok.png rename to lib/galaxy/web/framework/static/images/history-states/data_ok.png diff --git a/static/images/history-states/data_queued.png b/lib/galaxy/web/framework/static/images/history-states/data_queued.png similarity index 100% rename from static/images/history-states/data_queued.png rename to lib/galaxy/web/framework/static/images/history-states/data_queued.png diff --git a/static/images/history.gif b/lib/galaxy/web/framework/static/images/history.gif similarity index 100% rename from static/images/history.gif rename to lib/galaxy/web/framework/static/images/history.gif diff --git a/static/images/history_down_arrow.gif b/lib/galaxy/web/framework/static/images/history_down_arrow.gif similarity index 100% rename from static/images/history_down_arrow.gif rename to lib/galaxy/web/framework/static/images/history_down_arrow.gif diff --git a/static/images/history_up_arrow.gif b/lib/galaxy/web/framework/static/images/history_up_arrow.gif similarity index 100% rename from static/images/history_up_arrow.gif rename to lib/galaxy/web/framework/static/images/history_up_arrow.gif diff --git a/static/images/icon_error_lrg.gif b/lib/galaxy/web/framework/static/images/icon_error_lrg.gif similarity index 100% rename from static/images/icon_error_lrg.gif rename to lib/galaxy/web/framework/static/images/icon_error_lrg.gif diff --git a/static/images/icon_error_sml.gif b/lib/galaxy/web/framework/static/images/icon_error_sml.gif similarity index 100% rename from static/images/icon_error_sml.gif rename to lib/galaxy/web/framework/static/images/icon_error_sml.gif diff --git a/static/images/icon_info_lrg.gif b/lib/galaxy/web/framework/static/images/icon_info_lrg.gif similarity index 100% rename from static/images/icon_info_lrg.gif rename to lib/galaxy/web/framework/static/images/icon_info_lrg.gif diff --git a/static/images/icon_info_sml.gif b/lib/galaxy/web/framework/static/images/icon_info_sml.gif similarity index 100% rename from static/images/icon_info_sml.gif rename to lib/galaxy/web/framework/static/images/icon_info_sml.gif diff --git a/static/images/icon_success_lrg.gif b/lib/galaxy/web/framework/static/images/icon_success_lrg.gif similarity index 100% rename from static/images/icon_success_lrg.gif rename to lib/galaxy/web/framework/static/images/icon_success_lrg.gif diff --git a/static/images/icon_success_sml.gif b/lib/galaxy/web/framework/static/images/icon_success_sml.gif similarity index 100% rename from static/images/icon_success_sml.gif rename to lib/galaxy/web/framework/static/images/icon_success_sml.gif diff --git a/static/images/icon_warning_lrg.gif b/lib/galaxy/web/framework/static/images/icon_warning_lrg.gif similarity index 100% rename from static/images/icon_warning_lrg.gif rename to lib/galaxy/web/framework/static/images/icon_warning_lrg.gif diff --git a/static/images/icon_warning_sml.gif b/lib/galaxy/web/framework/static/images/icon_warning_sml.gif similarity index 100% rename from static/images/icon_warning_sml.gif rename to lib/galaxy/web/framework/static/images/icon_warning_sml.gif diff --git a/static/images/jstree/32px.png b/lib/galaxy/web/framework/static/images/jstree/32px.png similarity index 100% rename from static/images/jstree/32px.png rename to lib/galaxy/web/framework/static/images/jstree/32px.png diff --git a/static/images/jstree/40px.png b/lib/galaxy/web/framework/static/images/jstree/40px.png similarity index 100% rename from static/images/jstree/40px.png rename to lib/galaxy/web/framework/static/images/jstree/40px.png diff --git a/static/images/jstree/throbber.gif b/lib/galaxy/web/framework/static/images/jstree/throbber.gif similarity index 100% rename from static/images/jstree/throbber.gif rename to lib/galaxy/web/framework/static/images/jstree/throbber.gif diff --git a/static/images/kendall.png b/lib/galaxy/web/framework/static/images/kendall.png similarity index 100% rename from static/images/kendall.png rename to lib/galaxy/web/framework/static/images/kendall.png diff --git a/static/images/light_gray_grid.gif b/lib/galaxy/web/framework/static/images/light_gray_grid.gif similarity index 100% rename from static/images/light_gray_grid.gif rename to lib/galaxy/web/framework/static/images/light_gray_grid.gif diff --git a/static/images/loading_large_white_bg.gif b/lib/galaxy/web/framework/static/images/loading_large_white_bg.gif similarity index 100% rename from static/images/loading_large_white_bg.gif rename to lib/galaxy/web/framework/static/images/loading_large_white_bg.gif diff --git a/static/images/loading_small_white_bg.gif b/lib/galaxy/web/framework/static/images/loading_small_white_bg.gif similarity index 100% rename from static/images/loading_small_white_bg.gif rename to lib/galaxy/web/framework/static/images/loading_small_white_bg.gif diff --git a/static/images/maf_icons/interval2maf.png b/lib/galaxy/web/framework/static/images/maf_icons/interval2maf.png similarity index 100% rename from static/images/maf_icons/interval2maf.png rename to lib/galaxy/web/framework/static/images/maf_icons/interval2maf.png diff --git a/static/images/maf_icons/stitchMaf.png b/lib/galaxy/web/framework/static/images/maf_icons/stitchMaf.png similarity index 100% rename from static/images/maf_icons/stitchMaf.png rename to lib/galaxy/web/framework/static/images/maf_icons/stitchMaf.png diff --git a/static/images/mag_glass.png b/lib/galaxy/web/framework/static/images/mag_glass.png similarity index 100% rename from static/images/mag_glass.png rename to lib/galaxy/web/framework/static/images/mag_glass.png diff --git a/static/images/mutation_visualization_example.png b/lib/galaxy/web/framework/static/images/mutation_visualization_example.png similarity index 100% rename from static/images/mutation_visualization_example.png rename to lib/galaxy/web/framework/static/images/mutation_visualization_example.png diff --git a/static/images/openid-16x16.gif b/lib/galaxy/web/framework/static/images/openid-16x16.gif similarity index 100% rename from static/images/openid-16x16.gif rename to lib/galaxy/web/framework/static/images/openid-16x16.gif diff --git a/static/images/overview_arrows.png b/lib/galaxy/web/framework/static/images/overview_arrows.png similarity index 100% rename from static/images/overview_arrows.png rename to lib/galaxy/web/framework/static/images/overview_arrows.png diff --git a/static/images/pearson.png b/lib/galaxy/web/framework/static/images/pearson.png similarity index 100% rename from static/images/pearson.png rename to lib/galaxy/web/framework/static/images/pearson.png diff --git a/static/images/resizable.png b/lib/galaxy/web/framework/static/images/resizable.png similarity index 100% rename from static/images/resizable.png rename to lib/galaxy/web/framework/static/images/resizable.png diff --git a/static/images/rgWebLogo3_test.jpg b/lib/galaxy/web/framework/static/images/rgWebLogo3_test.jpg similarity index 100% rename from static/images/rgWebLogo3_test.jpg rename to lib/galaxy/web/framework/static/images/rgWebLogo3_test.jpg diff --git a/static/images/scatter.png b/lib/galaxy/web/framework/static/images/scatter.png similarity index 100% rename from static/images/scatter.png rename to lib/galaxy/web/framework/static/images/scatter.png diff --git a/static/images/scatterplot.png b/lib/galaxy/web/framework/static/images/scatterplot.png similarity index 100% rename from static/images/scatterplot.png rename to lib/galaxy/web/framework/static/images/scatterplot.png diff --git a/static/images/select2-spinner.gif b/lib/galaxy/web/framework/static/images/select2-spinner.gif similarity index 100% rename from static/images/select2-spinner.gif rename to lib/galaxy/web/framework/static/images/select2-spinner.gif diff --git a/static/images/select2.png b/lib/galaxy/web/framework/static/images/select2.png similarity index 100% rename from static/images/select2.png rename to lib/galaxy/web/framework/static/images/select2.png diff --git a/static/images/select2x2.png b/lib/galaxy/web/framework/static/images/select2x2.png similarity index 100% rename from static/images/select2x2.png rename to lib/galaxy/web/framework/static/images/select2x2.png diff --git a/static/images/silk/add.png b/lib/galaxy/web/framework/static/images/silk/add.png similarity index 100% rename from static/images/silk/add.png rename to lib/galaxy/web/framework/static/images/silk/add.png diff --git a/static/images/silk/book.png b/lib/galaxy/web/framework/static/images/silk/book.png similarity index 100% rename from static/images/silk/book.png rename to lib/galaxy/web/framework/static/images/silk/book.png diff --git a/static/images/silk/book_open.png b/lib/galaxy/web/framework/static/images/silk/book_open.png similarity index 100% rename from static/images/silk/book_open.png rename to lib/galaxy/web/framework/static/images/silk/book_open.png diff --git a/static/images/silk/chart_curve.png b/lib/galaxy/web/framework/static/images/silk/chart_curve.png similarity index 100% rename from static/images/silk/chart_curve.png rename to lib/galaxy/web/framework/static/images/silk/chart_curve.png diff --git a/static/images/silk/folder.png b/lib/galaxy/web/framework/static/images/silk/folder.png similarity index 100% rename from static/images/silk/folder.png rename to lib/galaxy/web/framework/static/images/silk/folder.png diff --git a/static/images/silk/folder_page.png b/lib/galaxy/web/framework/static/images/silk/folder_page.png similarity index 100% rename from static/images/silk/folder_page.png rename to lib/galaxy/web/framework/static/images/silk/folder_page.png diff --git a/static/images/silk/link.png b/lib/galaxy/web/framework/static/images/silk/link.png similarity index 100% rename from static/images/silk/link.png rename to lib/galaxy/web/framework/static/images/silk/link.png diff --git a/static/images/silk/link_break.png b/lib/galaxy/web/framework/static/images/silk/link_break.png similarity index 100% rename from static/images/silk/link_break.png rename to lib/galaxy/web/framework/static/images/silk/link_break.png diff --git a/static/images/silk/page_white.png b/lib/galaxy/web/framework/static/images/silk/page_white.png similarity index 100% rename from static/images/silk/page_white.png rename to lib/galaxy/web/framework/static/images/silk/page_white.png diff --git a/static/images/silk/page_white_compressed.png b/lib/galaxy/web/framework/static/images/silk/page_white_compressed.png similarity index 100% rename from static/images/silk/page_white_compressed.png rename to lib/galaxy/web/framework/static/images/silk/page_white_compressed.png diff --git a/static/images/silk/resultset_bottom.png b/lib/galaxy/web/framework/static/images/silk/resultset_bottom.png similarity index 100% rename from static/images/silk/resultset_bottom.png rename to lib/galaxy/web/framework/static/images/silk/resultset_bottom.png diff --git a/static/images/silk/resultset_next.png b/lib/galaxy/web/framework/static/images/silk/resultset_next.png similarity index 100% rename from static/images/silk/resultset_next.png rename to lib/galaxy/web/framework/static/images/silk/resultset_next.png diff --git a/static/images/silk/resultset_previous.png b/lib/galaxy/web/framework/static/images/silk/resultset_previous.png similarity index 100% rename from static/images/silk/resultset_previous.png rename to lib/galaxy/web/framework/static/images/silk/resultset_previous.png diff --git a/static/images/solid_qual.png b/lib/galaxy/web/framework/static/images/solid_qual.png similarity index 100% rename from static/images/solid_qual.png rename to lib/galaxy/web/framework/static/images/solid_qual.png diff --git a/static/images/spearman.png b/lib/galaxy/web/framework/static/images/spearman.png similarity index 100% rename from static/images/spearman.png rename to lib/galaxy/web/framework/static/images/spearman.png diff --git a/static/images/square_empty.gif b/lib/galaxy/web/framework/static/images/square_empty.gif similarity index 100% rename from static/images/square_empty.gif rename to lib/galaxy/web/framework/static/images/square_empty.gif diff --git a/static/images/square_error.gif b/lib/galaxy/web/framework/static/images/square_error.gif similarity index 100% rename from static/images/square_error.gif rename to lib/galaxy/web/framework/static/images/square_error.gif diff --git a/static/images/square_ok.gif b/lib/galaxy/web/framework/static/images/square_ok.gif similarity index 100% rename from static/images/square_ok.gif rename to lib/galaxy/web/framework/static/images/square_ok.gif diff --git a/static/images/square_queued.gif b/lib/galaxy/web/framework/static/images/square_queued.gif similarity index 100% rename from static/images/square_queued.gif rename to lib/galaxy/web/framework/static/images/square_queued.gif diff --git a/static/images/square_running.gif b/lib/galaxy/web/framework/static/images/square_running.gif similarity index 100% rename from static/images/square_running.gif rename to lib/galaxy/web/framework/static/images/square_running.gif diff --git a/static/images/star.gif b/lib/galaxy/web/framework/static/images/star.gif similarity index 100% rename from static/images/star.gif rename to lib/galaxy/web/framework/static/images/star.gif diff --git a/static/images/thumbtack_icon.png b/lib/galaxy/web/framework/static/images/thumbtack_icon.png similarity index 100% rename from static/images/thumbtack_icon.png rename to lib/galaxy/web/framework/static/images/thumbtack_icon.png diff --git a/static/images/thumbtack_icon_dark.png b/lib/galaxy/web/framework/static/images/thumbtack_icon_dark.png similarity index 100% rename from static/images/thumbtack_icon_dark.png rename to lib/galaxy/web/framework/static/images/thumbtack_icon_dark.png diff --git a/static/images/tipsy.gif b/lib/galaxy/web/framework/static/images/tipsy.gif similarity index 100% rename from static/images/tipsy.gif rename to lib/galaxy/web/framework/static/images/tipsy.gif diff --git a/static/images/tool_menu_down_arrow.gif b/lib/galaxy/web/framework/static/images/tool_menu_down_arrow.gif similarity index 100% rename from static/images/tool_menu_down_arrow.gif rename to lib/galaxy/web/framework/static/images/tool_menu_down_arrow.gif diff --git a/static/images/tools/lda/first_matrix_generator_example_file.png b/lib/galaxy/web/framework/static/images/tools/lda/first_matrix_generator_example_file.png similarity index 100% rename from static/images/tools/lda/first_matrix_generator_example_file.png rename to lib/galaxy/web/framework/static/images/tools/lda/first_matrix_generator_example_file.png diff --git a/static/images/tools/lda/second_matrix_generator_example_file.png b/lib/galaxy/web/framework/static/images/tools/lda/second_matrix_generator_example_file.png similarity index 100% rename from static/images/tools/lda/second_matrix_generator_example_file.png rename to lib/galaxy/web/framework/static/images/tools/lda/second_matrix_generator_example_file.png diff --git a/static/images/tracks/block.png b/lib/galaxy/web/framework/static/images/tracks/block.png similarity index 100% rename from static/images/tracks/block.png rename to lib/galaxy/web/framework/static/images/tracks/block.png diff --git a/static/images/tracks/close_btn.gif b/lib/galaxy/web/framework/static/images/tracks/close_btn.gif similarity index 100% rename from static/images/tracks/close_btn.gif rename to lib/galaxy/web/framework/static/images/tracks/close_btn.gif diff --git a/static/images/tracks/diag_bg.gif b/lib/galaxy/web/framework/static/images/tracks/diag_bg.gif similarity index 100% rename from static/images/tracks/diag_bg.gif rename to lib/galaxy/web/framework/static/images/tracks/diag_bg.gif diff --git a/static/images/tracks/go_btn.gif b/lib/galaxy/web/framework/static/images/tracks/go_btn.gif similarity index 100% rename from static/images/tracks/go_btn.gif rename to lib/galaxy/web/framework/static/images/tracks/go_btn.gif diff --git a/static/images/tracks/handle-left.gif b/lib/galaxy/web/framework/static/images/tracks/handle-left.gif similarity index 100% rename from static/images/tracks/handle-left.gif rename to lib/galaxy/web/framework/static/images/tracks/handle-left.gif diff --git a/static/images/tracks/handle-right.gif b/lib/galaxy/web/framework/static/images/tracks/handle-right.gif similarity index 100% rename from static/images/tracks/handle-right.gif rename to lib/galaxy/web/framework/static/images/tracks/handle-right.gif diff --git a/static/images/tracks/pan_left.gif b/lib/galaxy/web/framework/static/images/tracks/pan_left.gif similarity index 100% rename from static/images/tracks/pan_left.gif rename to lib/galaxy/web/framework/static/images/tracks/pan_left.gif diff --git a/static/images/tracks/pan_right.gif b/lib/galaxy/web/framework/static/images/tracks/pan_right.gif similarity index 100% rename from static/images/tracks/pan_right.gif rename to lib/galaxy/web/framework/static/images/tracks/pan_right.gif diff --git a/static/images/tracks/show_history.gif b/lib/galaxy/web/framework/static/images/tracks/show_history.gif similarity index 100% rename from static/images/tracks/show_history.gif rename to lib/galaxy/web/framework/static/images/tracks/show_history.gif diff --git a/static/images/tracks/zoom_in.gif b/lib/galaxy/web/framework/static/images/tracks/zoom_in.gif similarity index 100% rename from static/images/tracks/zoom_in.gif rename to lib/galaxy/web/framework/static/images/tracks/zoom_in.gif diff --git a/static/images/tracks/zoom_in_full.gif b/lib/galaxy/web/framework/static/images/tracks/zoom_in_full.gif similarity index 100% rename from static/images/tracks/zoom_in_full.gif rename to lib/galaxy/web/framework/static/images/tracks/zoom_in_full.gif diff --git a/static/images/tracks/zoom_out.gif b/lib/galaxy/web/framework/static/images/tracks/zoom_out.gif similarity index 100% rename from static/images/tracks/zoom_out.gif rename to lib/galaxy/web/framework/static/images/tracks/zoom_out.gif diff --git a/static/images/tracks/zoom_out_full.gif b/lib/galaxy/web/framework/static/images/tracks/zoom_out_full.gif similarity index 100% rename from static/images/tracks/zoom_out_full.gif rename to lib/galaxy/web/framework/static/images/tracks/zoom_out_full.gif diff --git a/static/images/up.gif b/lib/galaxy/web/framework/static/images/up.gif similarity index 100% rename from static/images/up.gif rename to lib/galaxy/web/framework/static/images/up.gif diff --git a/static/images/visualization/draggable_horizontal.png b/lib/galaxy/web/framework/static/images/visualization/draggable_horizontal.png similarity index 100% rename from static/images/visualization/draggable_horizontal.png rename to lib/galaxy/web/framework/static/images/visualization/draggable_horizontal.png diff --git a/static/images/visualization/draggable_vertical.png b/lib/galaxy/web/framework/static/images/visualization/draggable_vertical.png similarity index 100% rename from static/images/visualization/draggable_vertical.png rename to lib/galaxy/web/framework/static/images/visualization/draggable_vertical.png diff --git a/static/images/visualization/strand_left.png b/lib/galaxy/web/framework/static/images/visualization/strand_left.png similarity index 100% rename from static/images/visualization/strand_left.png rename to lib/galaxy/web/framework/static/images/visualization/strand_left.png diff --git a/static/images/visualization/strand_left_inv.png b/lib/galaxy/web/framework/static/images/visualization/strand_left_inv.png similarity index 100% rename from static/images/visualization/strand_left_inv.png rename to lib/galaxy/web/framework/static/images/visualization/strand_left_inv.png diff --git a/static/images/visualization/strand_right.png b/lib/galaxy/web/framework/static/images/visualization/strand_right.png similarity index 100% rename from static/images/visualization/strand_right.png rename to lib/galaxy/web/framework/static/images/visualization/strand_right.png diff --git a/static/images/visualization/strand_right_inv.png b/lib/galaxy/web/framework/static/images/visualization/strand_right_inv.png similarity index 100% rename from static/images/visualization/strand_right_inv.png rename to lib/galaxy/web/framework/static/images/visualization/strand_right_inv.png diff --git a/static/images/yui/rel_interstitial_loading.gif b/lib/galaxy/web/framework/static/images/yui/rel_interstitial_loading.gif similarity index 100% rename from static/images/yui/rel_interstitial_loading.gif rename to lib/galaxy/web/framework/static/images/yui/rel_interstitial_loading.gif diff --git a/lib/galaxy/web/framework/static/src b/lib/galaxy/web/framework/static/src new file mode 120000 index 00000000000..ff897777cef --- /dev/null +++ b/lib/galaxy/web/framework/static/src @@ -0,0 +1 @@ +../../../../../client/galaxy/scripts \ No newline at end of file diff --git a/lib/galaxy/web/framework/static/toolshed/src b/lib/galaxy/web/framework/static/toolshed/src new file mode 120000 index 00000000000..c220e9eeebb --- /dev/null +++ b/lib/galaxy/web/framework/static/toolshed/src @@ -0,0 +1 @@ +../../../../../../client/toolshed/scripts \ No newline at end of file diff --git a/templates/admin/dataset_security/group/grid.mako b/lib/galaxy/web/framework/templates/admin/dataset_security/group/grid.mako similarity index 100% rename from templates/admin/dataset_security/group/grid.mako rename to lib/galaxy/web/framework/templates/admin/dataset_security/group/grid.mako diff --git a/templates/admin/dataset_security/group/group.mako b/lib/galaxy/web/framework/templates/admin/dataset_security/group/group.mako similarity index 100% rename from templates/admin/dataset_security/group/group.mako rename to lib/galaxy/web/framework/templates/admin/dataset_security/group/group.mako diff --git a/templates/admin/dataset_security/group/group_create.mako b/lib/galaxy/web/framework/templates/admin/dataset_security/group/group_create.mako similarity index 100% rename from templates/admin/dataset_security/group/group_create.mako rename to lib/galaxy/web/framework/templates/admin/dataset_security/group/group_create.mako diff --git a/templates/admin/dataset_security/group/group_rename.mako b/lib/galaxy/web/framework/templates/admin/dataset_security/group/group_rename.mako similarity index 100% rename from templates/admin/dataset_security/group/group_rename.mako rename to lib/galaxy/web/framework/templates/admin/dataset_security/group/group_rename.mako diff --git a/templates/admin/dataset_security/role/grid.mako b/lib/galaxy/web/framework/templates/admin/dataset_security/role/grid.mako similarity index 100% rename from templates/admin/dataset_security/role/grid.mako rename to lib/galaxy/web/framework/templates/admin/dataset_security/role/grid.mako diff --git a/templates/admin/dataset_security/role/role.mako b/lib/galaxy/web/framework/templates/admin/dataset_security/role/role.mako similarity index 100% rename from templates/admin/dataset_security/role/role.mako rename to lib/galaxy/web/framework/templates/admin/dataset_security/role/role.mako diff --git a/templates/admin/dataset_security/role/role_create.mako b/lib/galaxy/web/framework/templates/admin/dataset_security/role/role_create.mako similarity index 100% rename from templates/admin/dataset_security/role/role_create.mako rename to lib/galaxy/web/framework/templates/admin/dataset_security/role/role_create.mako diff --git a/templates/admin/dataset_security/role/role_rename.mako b/lib/galaxy/web/framework/templates/admin/dataset_security/role/role_rename.mako similarity index 100% rename from templates/admin/dataset_security/role/role_rename.mako rename to lib/galaxy/web/framework/templates/admin/dataset_security/role/role_rename.mako diff --git a/templates/admin/external_service/common.mako b/lib/galaxy/web/framework/templates/admin/external_service/common.mako similarity index 100% rename from templates/admin/external_service/common.mako rename to lib/galaxy/web/framework/templates/admin/external_service/common.mako diff --git a/templates/admin/external_service/create_external_service.mako b/lib/galaxy/web/framework/templates/admin/external_service/create_external_service.mako similarity index 100% rename from templates/admin/external_service/create_external_service.mako rename to lib/galaxy/web/framework/templates/admin/external_service/create_external_service.mako diff --git a/templates/admin/external_service/edit_external_service.mako b/lib/galaxy/web/framework/templates/admin/external_service/edit_external_service.mako similarity index 100% rename from templates/admin/external_service/edit_external_service.mako rename to lib/galaxy/web/framework/templates/admin/external_service/edit_external_service.mako diff --git a/templates/admin/external_service/grid.mako b/lib/galaxy/web/framework/templates/admin/external_service/grid.mako similarity index 100% rename from templates/admin/external_service/grid.mako rename to lib/galaxy/web/framework/templates/admin/external_service/grid.mako diff --git a/templates/admin/external_service/reload_external_service_types.mako b/lib/galaxy/web/framework/templates/admin/external_service/reload_external_service_types.mako similarity index 100% rename from templates/admin/external_service/reload_external_service_types.mako rename to lib/galaxy/web/framework/templates/admin/external_service/reload_external_service_types.mako diff --git a/templates/admin/external_service/view_external_service.mako b/lib/galaxy/web/framework/templates/admin/external_service/view_external_service.mako similarity index 100% rename from templates/admin/external_service/view_external_service.mako rename to lib/galaxy/web/framework/templates/admin/external_service/view_external_service.mako diff --git a/templates/admin/forms/create_form.mako b/lib/galaxy/web/framework/templates/admin/forms/create_form.mako similarity index 100% rename from templates/admin/forms/create_form.mako rename to lib/galaxy/web/framework/templates/admin/forms/create_form.mako diff --git a/templates/admin/forms/edit_form_definition.mako b/lib/galaxy/web/framework/templates/admin/forms/edit_form_definition.mako similarity index 100% rename from templates/admin/forms/edit_form_definition.mako rename to lib/galaxy/web/framework/templates/admin/forms/edit_form_definition.mako diff --git a/templates/admin/forms/grid.mako b/lib/galaxy/web/framework/templates/admin/forms/grid.mako similarity index 100% rename from templates/admin/forms/grid.mako rename to lib/galaxy/web/framework/templates/admin/forms/grid.mako diff --git a/templates/admin/forms/view_form_definition.mako b/lib/galaxy/web/framework/templates/admin/forms/view_form_definition.mako similarity index 100% rename from templates/admin/forms/view_form_definition.mako rename to lib/galaxy/web/framework/templates/admin/forms/view_form_definition.mako diff --git a/templates/admin/impersonate.mako b/lib/galaxy/web/framework/templates/admin/impersonate.mako similarity index 100% rename from templates/admin/impersonate.mako rename to lib/galaxy/web/framework/templates/admin/impersonate.mako diff --git a/templates/admin/jobs.mako b/lib/galaxy/web/framework/templates/admin/jobs.mako similarity index 100% rename from templates/admin/jobs.mako rename to lib/galaxy/web/framework/templates/admin/jobs.mako diff --git a/templates/admin/library/grid.mako b/lib/galaxy/web/framework/templates/admin/library/grid.mako similarity index 100% rename from templates/admin/library/grid.mako rename to lib/galaxy/web/framework/templates/admin/library/grid.mako diff --git a/templates/admin/library/new_library.mako b/lib/galaxy/web/framework/templates/admin/library/new_library.mako similarity index 100% rename from templates/admin/library/new_library.mako rename to lib/galaxy/web/framework/templates/admin/library/new_library.mako diff --git a/templates/admin/package_tool.mako b/lib/galaxy/web/framework/templates/admin/package_tool.mako similarity index 100% rename from templates/admin/package_tool.mako rename to lib/galaxy/web/framework/templates/admin/package_tool.mako diff --git a/templates/admin/quota/grid.mako b/lib/galaxy/web/framework/templates/admin/quota/grid.mako similarity index 100% rename from templates/admin/quota/grid.mako rename to lib/galaxy/web/framework/templates/admin/quota/grid.mako diff --git a/templates/admin/quota/quota.mako b/lib/galaxy/web/framework/templates/admin/quota/quota.mako similarity index 100% rename from templates/admin/quota/quota.mako rename to lib/galaxy/web/framework/templates/admin/quota/quota.mako diff --git a/templates/admin/quota/quota_create.mako b/lib/galaxy/web/framework/templates/admin/quota/quota_create.mako similarity index 100% rename from templates/admin/quota/quota_create.mako rename to lib/galaxy/web/framework/templates/admin/quota/quota_create.mako diff --git a/templates/admin/quota/quota_edit.mako b/lib/galaxy/web/framework/templates/admin/quota/quota_edit.mako similarity index 100% rename from templates/admin/quota/quota_edit.mako rename to lib/galaxy/web/framework/templates/admin/quota/quota_edit.mako diff --git a/templates/admin/quota/quota_rename.mako b/lib/galaxy/web/framework/templates/admin/quota/quota_rename.mako similarity index 100% rename from templates/admin/quota/quota_rename.mako rename to lib/galaxy/web/framework/templates/admin/quota/quota_rename.mako diff --git a/templates/admin/quota/quota_set_default.mako b/lib/galaxy/web/framework/templates/admin/quota/quota_set_default.mako similarity index 100% rename from templates/admin/quota/quota_set_default.mako rename to lib/galaxy/web/framework/templates/admin/quota/quota_set_default.mako diff --git a/templates/admin/reload_tool.mako b/lib/galaxy/web/framework/templates/admin/reload_tool.mako similarity index 100% rename from templates/admin/reload_tool.mako rename to lib/galaxy/web/framework/templates/admin/reload_tool.mako diff --git a/templates/admin/request_type/common.mako b/lib/galaxy/web/framework/templates/admin/request_type/common.mako similarity index 100% rename from templates/admin/request_type/common.mako rename to lib/galaxy/web/framework/templates/admin/request_type/common.mako diff --git a/templates/admin/request_type/create_request_type.mako b/lib/galaxy/web/framework/templates/admin/request_type/create_request_type.mako similarity index 100% rename from templates/admin/request_type/create_request_type.mako rename to lib/galaxy/web/framework/templates/admin/request_type/create_request_type.mako diff --git a/templates/admin/request_type/edit_request_type.mako b/lib/galaxy/web/framework/templates/admin/request_type/edit_request_type.mako similarity index 100% rename from templates/admin/request_type/edit_request_type.mako rename to lib/galaxy/web/framework/templates/admin/request_type/edit_request_type.mako diff --git a/templates/admin/request_type/grid.mako b/lib/galaxy/web/framework/templates/admin/request_type/grid.mako similarity index 100% rename from templates/admin/request_type/grid.mako rename to lib/galaxy/web/framework/templates/admin/request_type/grid.mako diff --git a/templates/admin/request_type/request_type_permissions.mako b/lib/galaxy/web/framework/templates/admin/request_type/request_type_permissions.mako similarity index 100% rename from templates/admin/request_type/request_type_permissions.mako rename to lib/galaxy/web/framework/templates/admin/request_type/request_type_permissions.mako diff --git a/templates/admin/request_type/view_request_type.mako b/lib/galaxy/web/framework/templates/admin/request_type/view_request_type.mako similarity index 100% rename from templates/admin/request_type/view_request_type.mako rename to lib/galaxy/web/framework/templates/admin/request_type/view_request_type.mako diff --git a/templates/admin/requests/grid.mako b/lib/galaxy/web/framework/templates/admin/requests/grid.mako similarity index 100% rename from templates/admin/requests/grid.mako rename to lib/galaxy/web/framework/templates/admin/requests/grid.mako diff --git a/templates/admin/requests/reject.mako b/lib/galaxy/web/framework/templates/admin/requests/reject.mako similarity index 100% rename from templates/admin/requests/reject.mako rename to lib/galaxy/web/framework/templates/admin/requests/reject.mako diff --git a/templates/admin/requests/rename_datasets.mako b/lib/galaxy/web/framework/templates/admin/requests/rename_datasets.mako similarity index 100% rename from templates/admin/requests/rename_datasets.mako rename to lib/galaxy/web/framework/templates/admin/requests/rename_datasets.mako diff --git a/templates/admin/requests/sample_datasets_grid.mako b/lib/galaxy/web/framework/templates/admin/requests/sample_datasets_grid.mako similarity index 100% rename from templates/admin/requests/sample_datasets_grid.mako rename to lib/galaxy/web/framework/templates/admin/requests/sample_datasets_grid.mako diff --git a/templates/admin/requests/view_sample_dataset.mako b/lib/galaxy/web/framework/templates/admin/requests/view_sample_dataset.mako similarity index 100% rename from templates/admin/requests/view_sample_dataset.mako rename to lib/galaxy/web/framework/templates/admin/requests/view_sample_dataset.mako diff --git a/templates/admin/review_tool_migration_stages.mako b/lib/galaxy/web/framework/templates/admin/review_tool_migration_stages.mako similarity index 100% rename from templates/admin/review_tool_migration_stages.mako rename to lib/galaxy/web/framework/templates/admin/review_tool_migration_stages.mako diff --git a/templates/admin/tool_errors.mako b/lib/galaxy/web/framework/templates/admin/tool_errors.mako similarity index 100% rename from templates/admin/tool_errors.mako rename to lib/galaxy/web/framework/templates/admin/tool_errors.mako diff --git a/templates/admin/tool_shed_repository/browse_categories.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/browse_categories.mako similarity index 100% rename from templates/admin/tool_shed_repository/browse_categories.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/browse_categories.mako diff --git a/templates/admin/tool_shed_repository/browse_category.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/browse_category.mako similarity index 100% rename from templates/admin/tool_shed_repository/browse_category.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/browse_category.mako diff --git a/templates/admin/tool_shed_repository/browse_repository.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/browse_repository.mako similarity index 100% rename from templates/admin/tool_shed_repository/browse_repository.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/browse_repository.mako diff --git a/templates/admin/tool_shed_repository/browse_tool_dependency.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/browse_tool_dependency.mako similarity index 100% rename from templates/admin/tool_shed_repository/browse_tool_dependency.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/browse_tool_dependency.mako diff --git a/templates/admin/tool_shed_repository/common.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/common.mako similarity index 100% rename from templates/admin/tool_shed_repository/common.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/common.mako diff --git a/templates/admin/tool_shed_repository/deactivate_or_uninstall_repository.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/deactivate_or_uninstall_repository.mako similarity index 100% rename from templates/admin/tool_shed_repository/deactivate_or_uninstall_repository.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/deactivate_or_uninstall_repository.mako diff --git a/templates/admin/tool_shed_repository/grid.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/grid.mako similarity index 100% rename from templates/admin/tool_shed_repository/grid.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/grid.mako diff --git a/templates/admin/tool_shed_repository/initiate_repository_installation.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/initiate_repository_installation.mako similarity index 100% rename from templates/admin/tool_shed_repository/initiate_repository_installation.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/initiate_repository_installation.mako diff --git a/templates/admin/tool_shed_repository/install_tool_dependencies_with_update.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/install_tool_dependencies_with_update.mako similarity index 100% rename from templates/admin/tool_shed_repository/install_tool_dependencies_with_update.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/install_tool_dependencies_with_update.mako diff --git a/templates/admin/tool_shed_repository/manage_repository.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/manage_repository.mako similarity index 100% rename from templates/admin/tool_shed_repository/manage_repository.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/manage_repository.mako diff --git a/templates/admin/tool_shed_repository/manage_repository_tool_dependencies.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/manage_repository_tool_dependencies.mako similarity index 100% rename from templates/admin/tool_shed_repository/manage_repository_tool_dependencies.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/manage_repository_tool_dependencies.mako diff --git a/templates/admin/tool_shed_repository/preview_repository.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/preview_repository.mako similarity index 100% rename from templates/admin/tool_shed_repository/preview_repository.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/preview_repository.mako diff --git a/templates/admin/tool_shed_repository/purge_repository_confirmation.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/purge_repository_confirmation.mako similarity index 100% rename from templates/admin/tool_shed_repository/purge_repository_confirmation.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/purge_repository_confirmation.mako diff --git a/templates/admin/tool_shed_repository/repair_repository.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/repair_repository.mako similarity index 100% rename from templates/admin/tool_shed_repository/repair_repository.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/repair_repository.mako diff --git a/templates/admin/tool_shed_repository/repository_actions_menu.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/repository_actions_menu.mako similarity index 100% rename from templates/admin/tool_shed_repository/repository_actions_menu.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/repository_actions_menu.mako diff --git a/templates/admin/tool_shed_repository/repository_installation_grid.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/repository_installation_grid.mako similarity index 100% rename from templates/admin/tool_shed_repository/repository_installation_grid.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/repository_installation_grid.mako diff --git a/templates/admin/tool_shed_repository/repository_installation_status.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/repository_installation_status.mako similarity index 100% rename from templates/admin/tool_shed_repository/repository_installation_status.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/repository_installation_status.mako diff --git a/templates/admin/tool_shed_repository/reselect_tool_panel_section.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/reselect_tool_panel_section.mako similarity index 100% rename from templates/admin/tool_shed_repository/reselect_tool_panel_section.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/reselect_tool_panel_section.mako diff --git a/templates/admin/tool_shed_repository/reset_metadata_on_selected_repositories.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/reset_metadata_on_selected_repositories.mako similarity index 100% rename from templates/admin/tool_shed_repository/reset_metadata_on_selected_repositories.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/reset_metadata_on_selected_repositories.mako diff --git a/templates/admin/tool_shed_repository/select_shed_tool_panel_config.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/select_shed_tool_panel_config.mako similarity index 100% rename from templates/admin/tool_shed_repository/select_shed_tool_panel_config.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/select_shed_tool_panel_config.mako diff --git a/templates/admin/tool_shed_repository/select_tool_panel_section.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/select_tool_panel_section.mako similarity index 100% rename from templates/admin/tool_shed_repository/select_tool_panel_section.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/select_tool_panel_section.mako diff --git a/templates/admin/tool_shed_repository/tool_dependencies_grid.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/tool_dependencies_grid.mako similarity index 100% rename from templates/admin/tool_shed_repository/tool_dependencies_grid.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/tool_dependencies_grid.mako diff --git a/templates/admin/tool_shed_repository/tool_dependency_installation_status.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/tool_dependency_installation_status.mako similarity index 100% rename from templates/admin/tool_shed_repository/tool_dependency_installation_status.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/tool_dependency_installation_status.mako diff --git a/templates/admin/tool_shed_repository/uninstall_tool_dependencies.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/uninstall_tool_dependencies.mako similarity index 100% rename from templates/admin/tool_shed_repository/uninstall_tool_dependencies.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/uninstall_tool_dependencies.mako diff --git a/templates/admin/tool_shed_repository/view_tool_metadata.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/view_tool_metadata.mako similarity index 100% rename from templates/admin/tool_shed_repository/view_tool_metadata.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/view_tool_metadata.mako diff --git a/templates/admin/tool_shed_repository/view_workflow.mako b/lib/galaxy/web/framework/templates/admin/tool_shed_repository/view_workflow.mako similarity index 100% rename from templates/admin/tool_shed_repository/view_workflow.mako rename to lib/galaxy/web/framework/templates/admin/tool_shed_repository/view_workflow.mako diff --git a/templates/admin/tool_version/grid.mako b/lib/galaxy/web/framework/templates/admin/tool_version/grid.mako similarity index 100% rename from templates/admin/tool_version/grid.mako rename to lib/galaxy/web/framework/templates/admin/tool_version/grid.mako diff --git a/templates/admin/user/grid.mako b/lib/galaxy/web/framework/templates/admin/user/grid.mako similarity index 100% rename from templates/admin/user/grid.mako rename to lib/galaxy/web/framework/templates/admin/user/grid.mako diff --git a/templates/admin/user/reset_password.mako b/lib/galaxy/web/framework/templates/admin/user/reset_password.mako similarity index 100% rename from templates/admin/user/reset_password.mako rename to lib/galaxy/web/framework/templates/admin/user/reset_password.mako diff --git a/templates/admin/user/user.mako b/lib/galaxy/web/framework/templates/admin/user/user.mako similarity index 100% rename from templates/admin/user/user.mako rename to lib/galaxy/web/framework/templates/admin/user/user.mako diff --git a/templates/admin/view_data_tables_registry.mako b/lib/galaxy/web/framework/templates/admin/view_data_tables_registry.mako similarity index 100% rename from templates/admin/view_data_tables_registry.mako rename to lib/galaxy/web/framework/templates/admin/view_data_tables_registry.mako diff --git a/templates/admin/view_datatypes_registry.mako b/lib/galaxy/web/framework/templates/admin/view_datatypes_registry.mako similarity index 100% rename from templates/admin/view_datatypes_registry.mako rename to lib/galaxy/web/framework/templates/admin/view_datatypes_registry.mako diff --git a/templates/base.mako b/lib/galaxy/web/framework/templates/base.mako similarity index 100% rename from templates/base.mako rename to lib/galaxy/web/framework/templates/base.mako diff --git a/templates/base/base_panels.mako b/lib/galaxy/web/framework/templates/base/base_panels.mako similarity index 100% rename from templates/base/base_panels.mako rename to lib/galaxy/web/framework/templates/base/base_panels.mako diff --git a/templates/common/select_template.mako b/lib/galaxy/web/framework/templates/common/select_template.mako similarity index 100% rename from templates/common/select_template.mako rename to lib/galaxy/web/framework/templates/common/select_template.mako diff --git a/templates/common/template_common.mako b/lib/galaxy/web/framework/templates/common/template_common.mako similarity index 100% rename from templates/common/template_common.mako rename to lib/galaxy/web/framework/templates/common/template_common.mako diff --git a/templates/display_base.mako b/lib/galaxy/web/framework/templates/display_base.mako similarity index 100% rename from templates/display_base.mako rename to lib/galaxy/web/framework/templates/display_base.mako diff --git a/templates/display_common.mako b/lib/galaxy/web/framework/templates/display_common.mako similarity index 100% rename from templates/display_common.mako rename to lib/galaxy/web/framework/templates/display_common.mako diff --git a/templates/embed_base.mako b/lib/galaxy/web/framework/templates/embed_base.mako similarity index 100% rename from templates/embed_base.mako rename to lib/galaxy/web/framework/templates/embed_base.mako diff --git a/templates/export_base.mako b/lib/galaxy/web/framework/templates/export_base.mako similarity index 100% rename from templates/export_base.mako rename to lib/galaxy/web/framework/templates/export_base.mako diff --git a/templates/form.mako b/lib/galaxy/web/framework/templates/form.mako similarity index 100% rename from templates/form.mako rename to lib/galaxy/web/framework/templates/form.mako diff --git a/templates/galaxy_client_app.mako b/lib/galaxy/web/framework/templates/galaxy_client_app.mako similarity index 100% rename from templates/galaxy_client_app.mako rename to lib/galaxy/web/framework/templates/galaxy_client_app.mako diff --git a/templates/grid_base.mako b/lib/galaxy/web/framework/templates/grid_base.mako similarity index 100% rename from templates/grid_base.mako rename to lib/galaxy/web/framework/templates/grid_base.mako diff --git a/templates/grid_base_async.mako b/lib/galaxy/web/framework/templates/grid_base_async.mako similarity index 100% rename from templates/grid_base_async.mako rename to lib/galaxy/web/framework/templates/grid_base_async.mako diff --git a/templates/ind_share_base.mako b/lib/galaxy/web/framework/templates/ind_share_base.mako similarity index 100% rename from templates/ind_share_base.mako rename to lib/galaxy/web/framework/templates/ind_share_base.mako diff --git a/templates/js-app.mako b/lib/galaxy/web/framework/templates/js-app.mako similarity index 100% rename from templates/js-app.mako rename to lib/galaxy/web/framework/templates/js-app.mako diff --git a/templates/message.mako b/lib/galaxy/web/framework/templates/message.mako similarity index 100% rename from templates/message.mako rename to lib/galaxy/web/framework/templates/message.mako diff --git a/templates/no_access.mako b/lib/galaxy/web/framework/templates/no_access.mako similarity index 100% rename from templates/no_access.mako rename to lib/galaxy/web/framework/templates/no_access.mako diff --git a/templates/page_base.mako b/lib/galaxy/web/framework/templates/page_base.mako similarity index 100% rename from templates/page_base.mako rename to lib/galaxy/web/framework/templates/page_base.mako diff --git a/templates/panels.mako b/lib/galaxy/web/framework/templates/panels.mako similarity index 100% rename from templates/panels.mako rename to lib/galaxy/web/framework/templates/panels.mako diff --git a/templates/refresh_frames.mako b/lib/galaxy/web/framework/templates/refresh_frames.mako similarity index 100% rename from templates/refresh_frames.mako rename to lib/galaxy/web/framework/templates/refresh_frames.mako diff --git a/templates/rss.mako b/lib/galaxy/web/framework/templates/rss.mako similarity index 100% rename from templates/rss.mako rename to lib/galaxy/web/framework/templates/rss.mako diff --git a/templates/search/index.mako b/lib/galaxy/web/framework/templates/search/index.mako similarity index 100% rename from templates/search/index.mako rename to lib/galaxy/web/framework/templates/search/index.mako diff --git a/templates/sharing_base.mako b/lib/galaxy/web/framework/templates/sharing_base.mako similarity index 100% rename from templates/sharing_base.mako rename to lib/galaxy/web/framework/templates/sharing_base.mako diff --git a/templates/show_params.mako b/lib/galaxy/web/framework/templates/show_params.mako similarity index 100% rename from templates/show_params.mako rename to lib/galaxy/web/framework/templates/show_params.mako diff --git a/templates/slug_editing_js.mako b/lib/galaxy/web/framework/templates/slug_editing_js.mako similarity index 100% rename from templates/slug_editing_js.mako rename to lib/galaxy/web/framework/templates/slug_editing_js.mako diff --git a/templates/sorting_base.mako b/lib/galaxy/web/framework/templates/sorting_base.mako similarity index 100% rename from templates/sorting_base.mako rename to lib/galaxy/web/framework/templates/sorting_base.mako diff --git a/templates/spark_base.mako b/lib/galaxy/web/framework/templates/spark_base.mako similarity index 100% rename from templates/spark_base.mako rename to lib/galaxy/web/framework/templates/spark_base.mako diff --git a/templates/tagging_common.mako b/lib/galaxy/web/framework/templates/tagging_common.mako similarity index 100% rename from templates/tagging_common.mako rename to lib/galaxy/web/framework/templates/tagging_common.mako diff --git a/templates/tool_shed_rating.mako b/lib/galaxy/web/framework/templates/tool_shed_rating.mako similarity index 100% rename from templates/tool_shed_rating.mako rename to lib/galaxy/web/framework/templates/tool_shed_rating.mako diff --git a/templates/user/change_password.mako b/lib/galaxy/web/framework/templates/user/change_password.mako similarity index 100% rename from templates/user/change_password.mako rename to lib/galaxy/web/framework/templates/user/change_password.mako diff --git a/templates/user/dbkeys.mako b/lib/galaxy/web/framework/templates/user/dbkeys.mako similarity index 100% rename from templates/user/dbkeys.mako rename to lib/galaxy/web/framework/templates/user/dbkeys.mako diff --git a/templates/user/edit_address.mako b/lib/galaxy/web/framework/templates/user/edit_address.mako similarity index 100% rename from templates/user/edit_address.mako rename to lib/galaxy/web/framework/templates/user/edit_address.mako diff --git a/templates/user/index.mako b/lib/galaxy/web/framework/templates/user/index.mako similarity index 100% rename from templates/user/index.mako rename to lib/galaxy/web/framework/templates/user/index.mako diff --git a/templates/user/info.mako b/lib/galaxy/web/framework/templates/user/info.mako similarity index 100% rename from templates/user/info.mako rename to lib/galaxy/web/framework/templates/user/info.mako diff --git a/templates/user/login.mako b/lib/galaxy/web/framework/templates/user/login.mako similarity index 100% rename from templates/user/login.mako rename to lib/galaxy/web/framework/templates/user/login.mako diff --git a/templates/user/logout.mako b/lib/galaxy/web/framework/templates/user/logout.mako similarity index 100% rename from templates/user/logout.mako rename to lib/galaxy/web/framework/templates/user/logout.mako diff --git a/templates/user/new_address.mako b/lib/galaxy/web/framework/templates/user/new_address.mako similarity index 100% rename from templates/user/new_address.mako rename to lib/galaxy/web/framework/templates/user/new_address.mako diff --git a/templates/user/openid_associate.mako b/lib/galaxy/web/framework/templates/user/openid_associate.mako similarity index 100% rename from templates/user/openid_associate.mako rename to lib/galaxy/web/framework/templates/user/openid_associate.mako diff --git a/templates/user/openid_manage.mako b/lib/galaxy/web/framework/templates/user/openid_manage.mako similarity index 100% rename from templates/user/openid_manage.mako rename to lib/galaxy/web/framework/templates/user/openid_manage.mako diff --git a/templates/user/permissions.mako b/lib/galaxy/web/framework/templates/user/permissions.mako similarity index 100% rename from templates/user/permissions.mako rename to lib/galaxy/web/framework/templates/user/permissions.mako diff --git a/templates/user/register.mako b/lib/galaxy/web/framework/templates/user/register.mako similarity index 100% rename from templates/user/register.mako rename to lib/galaxy/web/framework/templates/user/register.mako diff --git a/templates/user/reset_password.mako b/lib/galaxy/web/framework/templates/user/reset_password.mako similarity index 100% rename from templates/user/reset_password.mako rename to lib/galaxy/web/framework/templates/user/reset_password.mako diff --git a/templates/user/toolbox_filters.mako b/lib/galaxy/web/framework/templates/user/toolbox_filters.mako similarity index 100% rename from templates/user/toolbox_filters.mako rename to lib/galaxy/web/framework/templates/user/toolbox_filters.mako diff --git a/templates/user/username.mako b/lib/galaxy/web/framework/templates/user/username.mako similarity index 100% rename from templates/user/username.mako rename to lib/galaxy/web/framework/templates/user/username.mako diff --git a/templates/webapps/galaxy/admin/center.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/admin/center.mako similarity index 100% rename from templates/webapps/galaxy/admin/center.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/admin/center.mako diff --git a/templates/webapps/galaxy/admin/index.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/admin/index.mako similarity index 100% rename from templates/webapps/galaxy/admin/index.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/admin/index.mako diff --git a/templates/webapps/galaxy/admin/sanitize_whitelist.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/admin/sanitize_whitelist.mako similarity index 100% rename from templates/webapps/galaxy/admin/sanitize_whitelist.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/admin/sanitize_whitelist.mako diff --git a/templates/webapps/galaxy/admin/tool_sheds.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/admin/tool_sheds.mako similarity index 100% rename from templates/webapps/galaxy/admin/tool_sheds.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/admin/tool_sheds.mako diff --git a/templates/webapps/galaxy/admin/toolsheds.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/admin/toolsheds.mako similarity index 100% rename from templates/webapps/galaxy/admin/toolsheds.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/admin/toolsheds.mako diff --git a/templates/webapps/galaxy/admin/view_display_applications.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/admin/view_display_applications.mako similarity index 100% rename from templates/webapps/galaxy/admin/view_display_applications.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/admin/view_display_applications.mako diff --git a/templates/webapps/galaxy/base_panels.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/base_panels.mako similarity index 100% rename from templates/webapps/galaxy/base_panels.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/base_panels.mako diff --git a/templates/webapps/galaxy/biostar/post_redirect.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/biostar/post_redirect.mako similarity index 100% rename from templates/webapps/galaxy/biostar/post_redirect.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/biostar/post_redirect.mako diff --git a/templates/webapps/galaxy/data_manager/index.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/data_manager/index.mako similarity index 100% rename from templates/webapps/galaxy/data_manager/index.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/data_manager/index.mako diff --git a/templates/webapps/galaxy/data_manager/manage_data_manager.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/data_manager/manage_data_manager.mako similarity index 100% rename from templates/webapps/galaxy/data_manager/manage_data_manager.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/data_manager/manage_data_manager.mako diff --git a/templates/webapps/galaxy/data_manager/manage_data_table.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/data_manager/manage_data_table.mako similarity index 100% rename from templates/webapps/galaxy/data_manager/manage_data_table.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/data_manager/manage_data_table.mako diff --git a/templates/webapps/galaxy/data_manager/view_job.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/data_manager/view_job.mako similarity index 100% rename from templates/webapps/galaxy/data_manager/view_job.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/data_manager/view_job.mako diff --git a/templates/webapps/galaxy/dataset/copy_view.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/copy_view.mako similarity index 100% rename from templates/webapps/galaxy/dataset/copy_view.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/copy_view.mako diff --git a/templates/webapps/galaxy/dataset/display.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/display.mako similarity index 100% rename from templates/webapps/galaxy/dataset/display.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/display.mako diff --git a/templates/webapps/galaxy/dataset/display_application/display.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/display_application/display.mako similarity index 100% rename from templates/webapps/galaxy/dataset/display_application/display.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/display_application/display.mako diff --git a/templates/webapps/galaxy/dataset/edit_attributes.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/edit_attributes.mako similarity index 100% rename from templates/webapps/galaxy/dataset/edit_attributes.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/edit_attributes.mako diff --git a/templates/webapps/galaxy/dataset/embed.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/embed.mako similarity index 100% rename from templates/webapps/galaxy/dataset/embed.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/embed.mako diff --git a/templates/webapps/galaxy/dataset/errors.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/errors.mako similarity index 100% rename from templates/webapps/galaxy/dataset/errors.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/errors.mako diff --git a/templates/webapps/galaxy/dataset/grid.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/grid.mako similarity index 100% rename from templates/webapps/galaxy/dataset/grid.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/grid.mako diff --git a/templates/webapps/galaxy/dataset/item_content.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/item_content.mako similarity index 100% rename from templates/webapps/galaxy/dataset/item_content.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/item_content.mako diff --git a/templates/webapps/galaxy/dataset/large_file.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/large_file.mako similarity index 100% rename from templates/webapps/galaxy/dataset/large_file.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/large_file.mako diff --git a/templates/webapps/galaxy/dataset/security_common.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/security_common.mako similarity index 100% rename from templates/webapps/galaxy/dataset/security_common.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/security_common.mako diff --git a/templates/webapps/galaxy/dataset/tabular_chunked.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/dataset/tabular_chunked.mako similarity index 100% rename from templates/webapps/galaxy/dataset/tabular_chunked.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/dataset/tabular_chunked.mako diff --git a/templates/webapps/galaxy/external_services/generic_jquery_grid.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/external_services/generic_jquery_grid.mako similarity index 100% rename from templates/webapps/galaxy/external_services/generic_jquery_grid.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/external_services/generic_jquery_grid.mako diff --git a/templates/webapps/galaxy/external_services/generic_json.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/external_services/generic_json.mako similarity index 100% rename from templates/webapps/galaxy/external_services/generic_json.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/external_services/generic_json.mako diff --git a/templates/webapps/galaxy/external_services/json_common.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/external_services/json_common.mako similarity index 100% rename from templates/webapps/galaxy/external_services/json_common.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/external_services/json_common.mako diff --git a/templates/webapps/galaxy/galaxy.masthead.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/galaxy.masthead.mako similarity index 100% rename from templates/webapps/galaxy/galaxy.masthead.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/galaxy.masthead.mako diff --git a/templates/webapps/galaxy/galaxy.panels.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/galaxy.panels.mako similarity index 100% rename from templates/webapps/galaxy/galaxy.panels.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/galaxy.panels.mako diff --git a/templates/webapps/galaxy/history/as_xml.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/as_xml.mako similarity index 100% rename from templates/webapps/galaxy/history/as_xml.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/as_xml.mako diff --git a/templates/webapps/galaxy/history/citations.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/citations.mako similarity index 100% rename from templates/webapps/galaxy/history/citations.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/citations.mako diff --git a/templates/webapps/galaxy/history/display.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/display.mako similarity index 100% rename from templates/webapps/galaxy/history/display.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/display.mako diff --git a/templates/webapps/galaxy/history/display_structured.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/display_structured.mako similarity index 100% rename from templates/webapps/galaxy/history/display_structured.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/display_structured.mako diff --git a/templates/webapps/galaxy/history/embed.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/embed.mako similarity index 100% rename from templates/webapps/galaxy/history/embed.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/embed.mako diff --git a/templates/webapps/galaxy/history/grid.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/grid.mako similarity index 100% rename from templates/webapps/galaxy/history/grid.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/grid.mako diff --git a/templates/webapps/galaxy/history/grid_js.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/grid_js.mako similarity index 100% rename from templates/webapps/galaxy/history/grid_js.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/grid_js.mako diff --git a/templates/webapps/galaxy/history/item_content.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/item_content.mako similarity index 100% rename from templates/webapps/galaxy/history/item_content.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/item_content.mako diff --git a/templates/webapps/galaxy/history/list_as_xml.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/list_as_xml.mako similarity index 100% rename from templates/webapps/galaxy/history/list_as_xml.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/list_as_xml.mako diff --git a/templates/webapps/galaxy/history/list_published.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/list_published.mako similarity index 100% rename from templates/webapps/galaxy/history/list_published.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/list_published.mako diff --git a/templates/webapps/galaxy/history/permissions.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/permissions.mako similarity index 100% rename from templates/webapps/galaxy/history/permissions.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/permissions.mako diff --git a/templates/webapps/galaxy/history/rename.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/rename.mako similarity index 100% rename from templates/webapps/galaxy/history/rename.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/rename.mako diff --git a/templates/webapps/galaxy/history/share.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/share.mako similarity index 100% rename from templates/webapps/galaxy/history/share.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/share.mako diff --git a/templates/webapps/galaxy/history/shared_grid.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/shared_grid.mako similarity index 100% rename from templates/webapps/galaxy/history/shared_grid.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/shared_grid.mako diff --git a/templates/webapps/galaxy/history/structure.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/structure.mako similarity index 100% rename from templates/webapps/galaxy/history/structure.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/structure.mako diff --git a/templates/webapps/galaxy/history/view.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/view.mako similarity index 100% rename from templates/webapps/galaxy/history/view.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/view.mako diff --git a/templates/webapps/galaxy/history/view_multiple.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/history/view_multiple.mako similarity index 100% rename from templates/webapps/galaxy/history/view_multiple.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/history/view_multiple.mako diff --git a/templates/webapps/galaxy/library/common/browse_library.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/browse_library.mako similarity index 100% rename from templates/webapps/galaxy/library/common/browse_library.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/browse_library.mako diff --git a/templates/webapps/galaxy/library/common/browse_library_opt.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/browse_library_opt.mako similarity index 100% rename from templates/webapps/galaxy/library/common/browse_library_opt.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/browse_library_opt.mako diff --git a/templates/webapps/galaxy/library/common/common.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/common.mako similarity index 100% rename from templates/webapps/galaxy/library/common/common.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/common.mako diff --git a/templates/webapps/galaxy/library/common/folder_info.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/folder_info.mako similarity index 100% rename from templates/webapps/galaxy/library/common/folder_info.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/folder_info.mako diff --git a/templates/webapps/galaxy/library/common/folder_permissions.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/folder_permissions.mako similarity index 100% rename from templates/webapps/galaxy/library/common/folder_permissions.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/folder_permissions.mako diff --git a/templates/webapps/galaxy/library/common/import_datasets_to_histories.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/import_datasets_to_histories.mako similarity index 100% rename from templates/webapps/galaxy/library/common/import_datasets_to_histories.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/import_datasets_to_histories.mako diff --git a/templates/webapps/galaxy/library/common/ldda_edit_info.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/ldda_edit_info.mako similarity index 100% rename from templates/webapps/galaxy/library/common/ldda_edit_info.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/ldda_edit_info.mako diff --git a/templates/webapps/galaxy/library/common/ldda_info.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/ldda_info.mako similarity index 100% rename from templates/webapps/galaxy/library/common/ldda_info.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/ldda_info.mako diff --git a/templates/webapps/galaxy/library/common/ldda_permissions.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/ldda_permissions.mako similarity index 100% rename from templates/webapps/galaxy/library/common/ldda_permissions.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/ldda_permissions.mako diff --git a/templates/webapps/galaxy/library/common/library_dataset_info.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_dataset_info.mako similarity index 100% rename from templates/webapps/galaxy/library/common/library_dataset_info.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_dataset_info.mako diff --git a/templates/webapps/galaxy/library/common/library_dataset_permissions.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_dataset_permissions.mako similarity index 100% rename from templates/webapps/galaxy/library/common/library_dataset_permissions.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_dataset_permissions.mako diff --git a/templates/webapps/galaxy/library/common/library_dataset_search_results.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_dataset_search_results.mako similarity index 100% rename from templates/webapps/galaxy/library/common/library_dataset_search_results.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_dataset_search_results.mako diff --git a/templates/webapps/galaxy/library/common/library_info.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_info.mako similarity index 100% rename from templates/webapps/galaxy/library/common/library_info.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_info.mako diff --git a/templates/webapps/galaxy/library/common/library_item_info.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_item_info.mako similarity index 100% rename from templates/webapps/galaxy/library/common/library_item_info.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_item_info.mako diff --git a/templates/webapps/galaxy/library/common/library_permissions.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_permissions.mako similarity index 100% rename from templates/webapps/galaxy/library/common/library_permissions.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/library_permissions.mako diff --git a/templates/webapps/galaxy/library/common/move_library_item.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/move_library_item.mako similarity index 100% rename from templates/webapps/galaxy/library/common/move_library_item.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/move_library_item.mako diff --git a/templates/webapps/galaxy/library/common/new_folder.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/new_folder.mako similarity index 100% rename from templates/webapps/galaxy/library/common/new_folder.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/new_folder.mako diff --git a/templates/webapps/galaxy/library/common/upload.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/common/upload.mako similarity index 100% rename from templates/webapps/galaxy/library/common/upload.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/common/upload.mako diff --git a/templates/webapps/galaxy/library/grid.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/grid.mako similarity index 100% rename from templates/webapps/galaxy/library/grid.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/grid.mako diff --git a/templates/webapps/galaxy/library/index.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/library/index.mako similarity index 100% rename from templates/webapps/galaxy/library/index.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/library/index.mako diff --git a/templates/webapps/galaxy/mobile/dataset/detail.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/mobile/dataset/detail.mako similarity index 100% rename from templates/webapps/galaxy/mobile/dataset/detail.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/mobile/dataset/detail.mako diff --git a/templates/webapps/galaxy/mobile/dataset/peek.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/mobile/dataset/peek.mako similarity index 100% rename from templates/webapps/galaxy/mobile/dataset/peek.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/mobile/dataset/peek.mako diff --git a/templates/webapps/galaxy/mobile/form.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/mobile/form.mako similarity index 100% rename from templates/webapps/galaxy/mobile/form.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/mobile/form.mako diff --git a/templates/webapps/galaxy/mobile/history/detail.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/mobile/history/detail.mako similarity index 100% rename from templates/webapps/galaxy/mobile/history/detail.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/mobile/history/detail.mako diff --git a/templates/webapps/galaxy/mobile/history/list.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/mobile/history/list.mako similarity index 100% rename from templates/webapps/galaxy/mobile/history/list.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/mobile/history/list.mako diff --git a/templates/webapps/galaxy/mobile/index.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/mobile/index.mako similarity index 100% rename from templates/webapps/galaxy/mobile/index.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/mobile/index.mako diff --git a/templates/webapps/galaxy/mobile/manage_library.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/mobile/manage_library.mako similarity index 100% rename from templates/webapps/galaxy/mobile/manage_library.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/mobile/manage_library.mako diff --git a/templates/webapps/galaxy/mobile/settings.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/mobile/settings.mako similarity index 100% rename from templates/webapps/galaxy/mobile/settings.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/mobile/settings.mako diff --git a/templates/webapps/galaxy/page/create.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/page/create.mako similarity index 100% rename from templates/webapps/galaxy/page/create.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/page/create.mako diff --git a/templates/webapps/galaxy/page/display.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/page/display.mako similarity index 100% rename from templates/webapps/galaxy/page/display.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/page/display.mako diff --git a/templates/webapps/galaxy/page/editor.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/page/editor.mako similarity index 100% rename from templates/webapps/galaxy/page/editor.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/page/editor.mako diff --git a/templates/webapps/galaxy/page/index.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/page/index.mako similarity index 100% rename from templates/webapps/galaxy/page/index.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/page/index.mako diff --git a/templates/webapps/galaxy/page/list_published.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/page/list_published.mako similarity index 100% rename from templates/webapps/galaxy/page/list_published.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/page/list_published.mako diff --git a/templates/webapps/galaxy/page/select_items_grid.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/page/select_items_grid.mako similarity index 100% rename from templates/webapps/galaxy/page/select_items_grid.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/page/select_items_grid.mako diff --git a/templates/webapps/galaxy/page/wymiframe.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/page/wymiframe.mako similarity index 100% rename from templates/webapps/galaxy/page/wymiframe.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/page/wymiframe.mako diff --git a/templates/webapps/galaxy/requests/common/add_samples.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/add_samples.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/add_samples.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/add_samples.mako diff --git a/templates/webapps/galaxy/requests/common/common.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/common.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/common.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/common.mako diff --git a/templates/webapps/galaxy/requests/common/create_request.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/create_request.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/create_request.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/create_request.mako diff --git a/templates/webapps/galaxy/requests/common/edit_basic_request_info.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/edit_basic_request_info.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/edit_basic_request_info.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/edit_basic_request_info.mako diff --git a/templates/webapps/galaxy/requests/common/edit_samples.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/edit_samples.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/edit_samples.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/edit_samples.mako diff --git a/templates/webapps/galaxy/requests/common/find_samples.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/find_samples.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/find_samples.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/find_samples.mako diff --git a/templates/webapps/galaxy/requests/common/index.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/index.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/index.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/index.mako diff --git a/templates/webapps/galaxy/requests/common/sample_dataset_transfer_status.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/sample_dataset_transfer_status.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/sample_dataset_transfer_status.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/sample_dataset_transfer_status.mako diff --git a/templates/webapps/galaxy/requests/common/sample_datasets.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/sample_datasets.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/sample_datasets.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/sample_datasets.mako diff --git a/templates/webapps/galaxy/requests/common/sample_state.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/sample_state.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/sample_state.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/sample_state.mako diff --git a/templates/webapps/galaxy/requests/common/view_request.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/view_request.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/view_request.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/view_request.mako diff --git a/templates/webapps/galaxy/requests/common/view_request_history.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/view_request_history.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/view_request_history.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/view_request_history.mako diff --git a/templates/webapps/galaxy/requests/common/view_sample.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/view_sample.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/view_sample.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/view_sample.mako diff --git a/templates/webapps/galaxy/requests/common/view_sample_datasets.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/view_sample_datasets.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/view_sample_datasets.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/view_sample_datasets.mako diff --git a/templates/webapps/galaxy/requests/common/view_sample_history.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/view_sample_history.mako similarity index 100% rename from templates/webapps/galaxy/requests/common/view_sample_history.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/common/view_sample_history.mako diff --git a/templates/webapps/galaxy/requests/find_samples_index.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/find_samples_index.mako similarity index 100% rename from templates/webapps/galaxy/requests/find_samples_index.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/find_samples_index.mako diff --git a/templates/webapps/galaxy/requests/grid.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/grid.mako similarity index 100% rename from templates/webapps/galaxy/requests/grid.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/grid.mako diff --git a/templates/webapps/galaxy/requests/index.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/requests/index.mako similarity index 100% rename from templates/webapps/galaxy/requests/index.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/requests/index.mako diff --git a/templates/webapps/galaxy/root/redirect.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/root/redirect.mako similarity index 100% rename from templates/webapps/galaxy/root/redirect.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/root/redirect.mako diff --git a/templates/webapps/galaxy/root/tool_runner.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/root/tool_runner.mako similarity index 100% rename from templates/webapps/galaxy/root/tool_runner.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/root/tool_runner.mako diff --git a/templates/webapps/galaxy/tracks/add_to_viz.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/tracks/add_to_viz.mako similarity index 100% rename from templates/webapps/galaxy/tracks/add_to_viz.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/tracks/add_to_viz.mako diff --git a/templates/webapps/galaxy/tracks/add_tracks.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/tracks/add_tracks.mako similarity index 100% rename from templates/webapps/galaxy/tracks/add_tracks.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/tracks/add_tracks.mako diff --git a/templates/webapps/galaxy/tracks/history_datasets_select_grid.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/tracks/history_datasets_select_grid.mako similarity index 100% rename from templates/webapps/galaxy/tracks/history_datasets_select_grid.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/tracks/history_datasets_select_grid.mako diff --git a/templates/webapps/galaxy/tracks/history_select_grid.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/tracks/history_select_grid.mako similarity index 100% rename from templates/webapps/galaxy/tracks/history_select_grid.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/tracks/history_select_grid.mako diff --git a/templates/webapps/galaxy/tracks/library_datasets_select_grid.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/tracks/library_datasets_select_grid.mako similarity index 100% rename from templates/webapps/galaxy/tracks/library_datasets_select_grid.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/tracks/library_datasets_select_grid.mako diff --git a/templates/webapps/galaxy/user/api_keys.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/user/api_keys.mako similarity index 100% rename from templates/webapps/galaxy/user/api_keys.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/user/api_keys.mako diff --git a/templates/webapps/galaxy/user/list_users.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/user/list_users.mako similarity index 100% rename from templates/webapps/galaxy/user/list_users.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/user/list_users.mako diff --git a/templates/webapps/galaxy/user/manage_info.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/user/manage_info.mako similarity index 100% rename from templates/webapps/galaxy/user/manage_info.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/user/manage_info.mako diff --git a/templates/webapps/galaxy/visualization/create.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/create.mako similarity index 100% rename from templates/webapps/galaxy/visualization/create.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/create.mako diff --git a/templates/webapps/galaxy/visualization/display.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/display.mako similarity index 100% rename from templates/webapps/galaxy/visualization/display.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/display.mako diff --git a/templates/webapps/galaxy/visualization/display_in_frame.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/display_in_frame.mako similarity index 100% rename from templates/webapps/galaxy/visualization/display_in_frame.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/display_in_frame.mako diff --git a/templates/webapps/galaxy/visualization/embed.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/embed.mako similarity index 100% rename from templates/webapps/galaxy/visualization/embed.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/embed.mako diff --git a/templates/webapps/galaxy/visualization/embed_in_frame.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/embed_in_frame.mako similarity index 100% rename from templates/webapps/galaxy/visualization/embed_in_frame.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/embed_in_frame.mako diff --git a/templates/webapps/galaxy/visualization/gie.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/gie.mako similarity index 100% rename from templates/webapps/galaxy/visualization/gie.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/gie.mako diff --git a/templates/webapps/galaxy/visualization/item_content.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/item_content.mako similarity index 100% rename from templates/webapps/galaxy/visualization/item_content.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/item_content.mako diff --git a/templates/webapps/galaxy/visualization/list.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/list.mako similarity index 100% rename from templates/webapps/galaxy/visualization/list.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/list.mako diff --git a/templates/webapps/galaxy/visualization/list_published.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/list_published.mako similarity index 100% rename from templates/webapps/galaxy/visualization/list_published.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/list_published.mako diff --git a/templates/webapps/galaxy/visualization/phyloviz.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/phyloviz.mako similarity index 100% rename from templates/webapps/galaxy/visualization/phyloviz.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/phyloviz.mako diff --git a/templates/webapps/galaxy/visualization/sweepster.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/visualization/sweepster.mako similarity index 100% rename from templates/webapps/galaxy/visualization/sweepster.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/visualization/sweepster.mako diff --git a/templates/webapps/galaxy/workflow/build_from_current_history.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/build_from_current_history.mako similarity index 100% rename from templates/webapps/galaxy/workflow/build_from_current_history.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/build_from_current_history.mako diff --git a/templates/webapps/galaxy/workflow/configure_menu.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/configure_menu.mako similarity index 100% rename from templates/webapps/galaxy/workflow/configure_menu.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/configure_menu.mako diff --git a/templates/webapps/galaxy/workflow/display.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/display.mako similarity index 100% rename from templates/webapps/galaxy/workflow/display.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/display.mako diff --git a/templates/webapps/galaxy/workflow/editor.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/editor.mako similarity index 100% rename from templates/webapps/galaxy/workflow/editor.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/editor.mako diff --git a/templates/webapps/galaxy/workflow/editor_generic_form.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/editor_generic_form.mako similarity index 100% rename from templates/webapps/galaxy/workflow/editor_generic_form.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/editor_generic_form.mako diff --git a/templates/webapps/galaxy/workflow/editor_tool_form.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/editor_tool_form.mako similarity index 100% rename from templates/webapps/galaxy/workflow/editor_tool_form.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/editor_tool_form.mako diff --git a/templates/webapps/galaxy/workflow/embed.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/embed.mako similarity index 100% rename from templates/webapps/galaxy/workflow/embed.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/embed.mako diff --git a/templates/webapps/galaxy/workflow/import.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/import.mako similarity index 100% rename from templates/webapps/galaxy/workflow/import.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/import.mako diff --git a/templates/webapps/galaxy/workflow/index.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/index.mako similarity index 100% rename from templates/webapps/galaxy/workflow/index.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/index.mako diff --git a/templates/webapps/galaxy/workflow/item_content.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/item_content.mako similarity index 100% rename from templates/webapps/galaxy/workflow/item_content.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/item_content.mako diff --git a/templates/webapps/galaxy/workflow/list.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/list.mako similarity index 100% rename from templates/webapps/galaxy/workflow/list.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/list.mako diff --git a/templates/webapps/galaxy/workflow/list_for_run.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/list_for_run.mako similarity index 100% rename from templates/webapps/galaxy/workflow/list_for_run.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/list_for_run.mako diff --git a/templates/webapps/galaxy/workflow/list_published.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/list_published.mako similarity index 100% rename from templates/webapps/galaxy/workflow/list_published.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/list_published.mako diff --git a/templates/webapps/galaxy/workflow/missing_tools.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/missing_tools.mako similarity index 100% rename from templates/webapps/galaxy/workflow/missing_tools.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/missing_tools.mako diff --git a/templates/webapps/galaxy/workflow/myexp_export.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/myexp_export.mako similarity index 100% rename from templates/webapps/galaxy/workflow/myexp_export.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/myexp_export.mako diff --git a/templates/webapps/galaxy/workflow/myexp_export_content.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/myexp_export_content.mako similarity index 100% rename from templates/webapps/galaxy/workflow/myexp_export_content.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/myexp_export_content.mako diff --git a/templates/webapps/galaxy/workflow/rename.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/rename.mako similarity index 100% rename from templates/webapps/galaxy/workflow/rename.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/rename.mako diff --git a/templates/webapps/galaxy/workflow/run.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/run.mako similarity index 100% rename from templates/webapps/galaxy/workflow/run.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/run.mako diff --git a/templates/webapps/galaxy/workflow/run_complete.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/run_complete.mako similarity index 100% rename from templates/webapps/galaxy/workflow/run_complete.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/run_complete.mako diff --git a/templates/webapps/galaxy/workflow/sharing.mako b/lib/galaxy/web/framework/templates/webapps/galaxy/workflow/sharing.mako similarity index 100% rename from templates/webapps/galaxy/workflow/sharing.mako rename to lib/galaxy/web/framework/templates/webapps/galaxy/workflow/sharing.mako diff --git a/templates/webapps/reports/base_panels.mako b/lib/galaxy/web/framework/templates/webapps/reports/base_panels.mako similarity index 100% rename from templates/webapps/reports/base_panels.mako rename to lib/galaxy/web/framework/templates/webapps/reports/base_panels.mako diff --git a/templates/webapps/reports/dataset_info.mako b/lib/galaxy/web/framework/templates/webapps/reports/dataset_info.mako similarity index 100% rename from templates/webapps/reports/dataset_info.mako rename to lib/galaxy/web/framework/templates/webapps/reports/dataset_info.mako diff --git a/templates/webapps/reports/grid.mako b/lib/galaxy/web/framework/templates/webapps/reports/grid.mako similarity index 100% rename from templates/webapps/reports/grid.mako rename to lib/galaxy/web/framework/templates/webapps/reports/grid.mako diff --git a/templates/webapps/reports/index.mako b/lib/galaxy/web/framework/templates/webapps/reports/index.mako similarity index 100% rename from templates/webapps/reports/index.mako rename to lib/galaxy/web/framework/templates/webapps/reports/index.mako diff --git a/templates/webapps/reports/job_info.mako b/lib/galaxy/web/framework/templates/webapps/reports/job_info.mako similarity index 100% rename from templates/webapps/reports/job_info.mako rename to lib/galaxy/web/framework/templates/webapps/reports/job_info.mako diff --git a/templates/webapps/reports/jobs_errors_per_tool.mako b/lib/galaxy/web/framework/templates/webapps/reports/jobs_errors_per_tool.mako similarity index 100% rename from templates/webapps/reports/jobs_errors_per_tool.mako rename to lib/galaxy/web/framework/templates/webapps/reports/jobs_errors_per_tool.mako diff --git a/templates/webapps/reports/jobs_per_month_all.mako b/lib/galaxy/web/framework/templates/webapps/reports/jobs_per_month_all.mako similarity index 100% rename from templates/webapps/reports/jobs_per_month_all.mako rename to lib/galaxy/web/framework/templates/webapps/reports/jobs_per_month_all.mako diff --git a/templates/webapps/reports/jobs_per_month_in_error.mako b/lib/galaxy/web/framework/templates/webapps/reports/jobs_per_month_in_error.mako similarity index 100% rename from templates/webapps/reports/jobs_per_month_in_error.mako rename to lib/galaxy/web/framework/templates/webapps/reports/jobs_per_month_in_error.mako diff --git a/templates/webapps/reports/jobs_per_tool.mako b/lib/galaxy/web/framework/templates/webapps/reports/jobs_per_tool.mako similarity index 100% rename from templates/webapps/reports/jobs_per_tool.mako rename to lib/galaxy/web/framework/templates/webapps/reports/jobs_per_tool.mako diff --git a/templates/webapps/reports/jobs_per_user.mako b/lib/galaxy/web/framework/templates/webapps/reports/jobs_per_user.mako similarity index 100% rename from templates/webapps/reports/jobs_per_user.mako rename to lib/galaxy/web/framework/templates/webapps/reports/jobs_per_user.mako diff --git a/templates/webapps/reports/jobs_specified_month_all.mako b/lib/galaxy/web/framework/templates/webapps/reports/jobs_specified_month_all.mako similarity index 100% rename from templates/webapps/reports/jobs_specified_month_all.mako rename to lib/galaxy/web/framework/templates/webapps/reports/jobs_specified_month_all.mako diff --git a/templates/webapps/reports/jobs_specified_month_in_error.mako b/lib/galaxy/web/framework/templates/webapps/reports/jobs_specified_month_in_error.mako similarity index 100% rename from templates/webapps/reports/jobs_specified_month_in_error.mako rename to lib/galaxy/web/framework/templates/webapps/reports/jobs_specified_month_in_error.mako diff --git a/templates/webapps/reports/jobs_tool_per_month.mako b/lib/galaxy/web/framework/templates/webapps/reports/jobs_tool_per_month.mako similarity index 100% rename from templates/webapps/reports/jobs_tool_per_month.mako rename to lib/galaxy/web/framework/templates/webapps/reports/jobs_tool_per_month.mako diff --git a/templates/webapps/reports/jobs_user_per_month.mako b/lib/galaxy/web/framework/templates/webapps/reports/jobs_user_per_month.mako similarity index 100% rename from templates/webapps/reports/jobs_user_per_month.mako rename to lib/galaxy/web/framework/templates/webapps/reports/jobs_user_per_month.mako diff --git a/templates/webapps/reports/registered_users.mako b/lib/galaxy/web/framework/templates/webapps/reports/registered_users.mako similarity index 100% rename from templates/webapps/reports/registered_users.mako rename to lib/galaxy/web/framework/templates/webapps/reports/registered_users.mako diff --git a/templates/webapps/reports/registered_users_per_month.mako b/lib/galaxy/web/framework/templates/webapps/reports/registered_users_per_month.mako similarity index 100% rename from templates/webapps/reports/registered_users_per_month.mako rename to lib/galaxy/web/framework/templates/webapps/reports/registered_users_per_month.mako diff --git a/templates/webapps/reports/registered_users_specified_date.mako b/lib/galaxy/web/framework/templates/webapps/reports/registered_users_specified_date.mako similarity index 100% rename from templates/webapps/reports/registered_users_specified_date.mako rename to lib/galaxy/web/framework/templates/webapps/reports/registered_users_specified_date.mako diff --git a/templates/webapps/reports/registered_users_specified_month.mako b/lib/galaxy/web/framework/templates/webapps/reports/registered_users_specified_month.mako similarity index 100% rename from templates/webapps/reports/registered_users_specified_month.mako rename to lib/galaxy/web/framework/templates/webapps/reports/registered_users_specified_month.mako diff --git a/templates/webapps/reports/requests_per_month_all.mako b/lib/galaxy/web/framework/templates/webapps/reports/requests_per_month_all.mako similarity index 100% rename from templates/webapps/reports/requests_per_month_all.mako rename to lib/galaxy/web/framework/templates/webapps/reports/requests_per_month_all.mako diff --git a/templates/webapps/reports/requests_per_user.mako b/lib/galaxy/web/framework/templates/webapps/reports/requests_per_user.mako similarity index 100% rename from templates/webapps/reports/requests_per_user.mako rename to lib/galaxy/web/framework/templates/webapps/reports/requests_per_user.mako diff --git a/templates/webapps/reports/requests_user_per_month.mako b/lib/galaxy/web/framework/templates/webapps/reports/requests_user_per_month.mako similarity index 100% rename from templates/webapps/reports/requests_user_per_month.mako rename to lib/galaxy/web/framework/templates/webapps/reports/requests_user_per_month.mako diff --git a/templates/webapps/reports/run_stats.mako b/lib/galaxy/web/framework/templates/webapps/reports/run_stats.mako similarity index 100% rename from templates/webapps/reports/run_stats.mako rename to lib/galaxy/web/framework/templates/webapps/reports/run_stats.mako diff --git a/templates/webapps/reports/system.mako b/lib/galaxy/web/framework/templates/webapps/reports/system.mako similarity index 100% rename from templates/webapps/reports/system.mako rename to lib/galaxy/web/framework/templates/webapps/reports/system.mako diff --git a/templates/webapps/reports/users_last_access_date.mako b/lib/galaxy/web/framework/templates/webapps/reports/users_last_access_date.mako similarity index 100% rename from templates/webapps/reports/users_last_access_date.mako rename to lib/galaxy/web/framework/templates/webapps/reports/users_last_access_date.mako diff --git a/templates/webapps/reports/users_user_disk_usage.mako b/lib/galaxy/web/framework/templates/webapps/reports/users_user_disk_usage.mako similarity index 100% rename from templates/webapps/reports/users_user_disk_usage.mako rename to lib/galaxy/web/framework/templates/webapps/reports/users_user_disk_usage.mako diff --git a/templates/webapps/reports/workflows_per_month_all.mako b/lib/galaxy/web/framework/templates/webapps/reports/workflows_per_month_all.mako similarity index 100% rename from templates/webapps/reports/workflows_per_month_all.mako rename to lib/galaxy/web/framework/templates/webapps/reports/workflows_per_month_all.mako diff --git a/templates/webapps/reports/workflows_per_user.mako b/lib/galaxy/web/framework/templates/webapps/reports/workflows_per_user.mako similarity index 100% rename from templates/webapps/reports/workflows_per_user.mako rename to lib/galaxy/web/framework/templates/webapps/reports/workflows_per_user.mako diff --git a/templates/webapps/reports/workflows_per_workflow.mako b/lib/galaxy/web/framework/templates/webapps/reports/workflows_per_workflow.mako similarity index 100% rename from templates/webapps/reports/workflows_per_workflow.mako rename to lib/galaxy/web/framework/templates/webapps/reports/workflows_per_workflow.mako diff --git a/templates/webapps/reports/workflows_user_per_month.mako b/lib/galaxy/web/framework/templates/webapps/reports/workflows_user_per_month.mako similarity index 100% rename from templates/webapps/reports/workflows_user_per_month.mako rename to lib/galaxy/web/framework/templates/webapps/reports/workflows_user_per_month.mako diff --git a/templates/webapps/tool_shed/admin/center.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/admin/center.mako similarity index 100% rename from templates/webapps/tool_shed/admin/center.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/admin/center.mako diff --git a/templates/webapps/tool_shed/admin/index.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/admin/index.mako similarity index 100% rename from templates/webapps/tool_shed/admin/index.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/admin/index.mako diff --git a/templates/webapps/tool_shed/admin/statistics.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/admin/statistics.mako similarity index 100% rename from templates/webapps/tool_shed/admin/statistics.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/admin/statistics.mako diff --git a/templates/webapps/tool_shed/base_panels.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/base_panels.mako similarity index 100% rename from templates/webapps/tool_shed/base_panels.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/base_panels.mako diff --git a/templates/webapps/tool_shed/category/create_category.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/category/create_category.mako similarity index 100% rename from templates/webapps/tool_shed/category/create_category.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/category/create_category.mako diff --git a/templates/webapps/tool_shed/category/edit_category.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/category/edit_category.mako similarity index 100% rename from templates/webapps/tool_shed/category/edit_category.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/category/edit_category.mako diff --git a/templates/webapps/tool_shed/category/grid.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/category/grid.mako similarity index 100% rename from templates/webapps/tool_shed/category/grid.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/category/grid.mako diff --git a/templates/webapps/tool_shed/category/valid_grid.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/category/valid_grid.mako similarity index 100% rename from templates/webapps/tool_shed/category/valid_grid.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/category/valid_grid.mako diff --git a/templates/webapps/tool_shed/common/common.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/common/common.mako similarity index 100% rename from templates/webapps/tool_shed/common/common.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/common/common.mako diff --git a/templates/webapps/tool_shed/common/grid_common.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/common/grid_common.mako similarity index 100% rename from templates/webapps/tool_shed/common/grid_common.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/common/grid_common.mako diff --git a/templates/webapps/tool_shed/common/repository_actions_menu.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/common/repository_actions_menu.mako similarity index 100% rename from templates/webapps/tool_shed/common/repository_actions_menu.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/common/repository_actions_menu.mako diff --git a/templates/webapps/tool_shed/common/reset_metadata_on_selected_repositories.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/common/reset_metadata_on_selected_repositories.mako similarity index 100% rename from templates/webapps/tool_shed/common/reset_metadata_on_selected_repositories.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/common/reset_metadata_on_selected_repositories.mako diff --git a/templates/webapps/tool_shed/group/index.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/group/index.mako similarity index 100% rename from templates/webapps/tool_shed/group/index.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/group/index.mako diff --git a/templates/webapps/tool_shed/index.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/index.mako similarity index 100% rename from templates/webapps/tool_shed/index.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/index.mako diff --git a/templates/webapps/tool_shed/repository/browse_repository.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/browse_repository.mako similarity index 100% rename from templates/webapps/tool_shed/repository/browse_repository.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/browse_repository.mako diff --git a/templates/webapps/tool_shed/repository/common.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/common.mako similarity index 100% rename from templates/webapps/tool_shed/repository/common.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/common.mako diff --git a/templates/webapps/tool_shed/repository/contact_owner.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/contact_owner.mako similarity index 100% rename from templates/webapps/tool_shed/repository/contact_owner.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/contact_owner.mako diff --git a/templates/webapps/tool_shed/repository/create_repository.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/create_repository.mako similarity index 100% rename from templates/webapps/tool_shed/repository/create_repository.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/create_repository.mako diff --git a/templates/webapps/tool_shed/repository/docker_image_repositories.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/docker_image_repositories.mako similarity index 100% rename from templates/webapps/tool_shed/repository/docker_image_repositories.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/docker_image_repositories.mako diff --git a/templates/webapps/tool_shed/repository/export_repository.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/export_repository.mako similarity index 100% rename from templates/webapps/tool_shed/repository/export_repository.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/export_repository.mako diff --git a/templates/webapps/tool_shed/repository/find_tools.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/find_tools.mako similarity index 100% rename from templates/webapps/tool_shed/repository/find_tools.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/find_tools.mako diff --git a/templates/webapps/tool_shed/repository/find_workflows.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/find_workflows.mako similarity index 100% rename from templates/webapps/tool_shed/repository/find_workflows.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/find_workflows.mako diff --git a/templates/webapps/tool_shed/repository/grid.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/grid.mako similarity index 100% rename from templates/webapps/tool_shed/repository/grid.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/grid.mako diff --git a/templates/webapps/tool_shed/repository/import_capsule.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/import_capsule.mako similarity index 100% rename from templates/webapps/tool_shed/repository/import_capsule.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/import_capsule.mako diff --git a/templates/webapps/tool_shed/repository/import_capsule_results.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/import_capsule_results.mako similarity index 100% rename from templates/webapps/tool_shed/repository/import_capsule_results.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/import_capsule_results.mako diff --git a/templates/webapps/tool_shed/repository/manage_repository.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/manage_repository.mako similarity index 100% rename from templates/webapps/tool_shed/repository/manage_repository.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/manage_repository.mako diff --git a/templates/webapps/tool_shed/repository/preview_tools_in_changeset.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/preview_tools_in_changeset.mako similarity index 100% rename from templates/webapps/tool_shed/repository/preview_tools_in_changeset.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/preview_tools_in_changeset.mako diff --git a/templates/webapps/tool_shed/repository/rate_repository.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/rate_repository.mako similarity index 100% rename from templates/webapps/tool_shed/repository/rate_repository.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/rate_repository.mako diff --git a/templates/webapps/tool_shed/repository/tool_form.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/tool_form.mako similarity index 100% rename from templates/webapps/tool_shed/repository/tool_form.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/tool_form.mako diff --git a/templates/webapps/tool_shed/repository/upload.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/upload.mako similarity index 100% rename from templates/webapps/tool_shed/repository/upload.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/upload.mako diff --git a/templates/webapps/tool_shed/repository/upload_capsule.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/upload_capsule.mako similarity index 100% rename from templates/webapps/tool_shed/repository/upload_capsule.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/upload_capsule.mako diff --git a/templates/webapps/tool_shed/repository/view_changelog.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/view_changelog.mako similarity index 100% rename from templates/webapps/tool_shed/repository/view_changelog.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/view_changelog.mako diff --git a/templates/webapps/tool_shed/repository/view_changeset.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/view_changeset.mako similarity index 100% rename from templates/webapps/tool_shed/repository/view_changeset.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/view_changeset.mako diff --git a/templates/webapps/tool_shed/repository/view_repository.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/view_repository.mako similarity index 100% rename from templates/webapps/tool_shed/repository/view_repository.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/view_repository.mako diff --git a/templates/webapps/tool_shed/repository/view_tool_metadata.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/view_tool_metadata.mako similarity index 100% rename from templates/webapps/tool_shed/repository/view_tool_metadata.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/view_tool_metadata.mako diff --git a/templates/webapps/tool_shed/repository/view_workflow.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository/view_workflow.mako similarity index 100% rename from templates/webapps/tool_shed/repository/view_workflow.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository/view_workflow.mako diff --git a/templates/webapps/tool_shed/repository_review/browse_review.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/browse_review.mako similarity index 100% rename from templates/webapps/tool_shed/repository_review/browse_review.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/browse_review.mako diff --git a/templates/webapps/tool_shed/repository_review/create_component.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/create_component.mako similarity index 100% rename from templates/webapps/tool_shed/repository_review/create_component.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/create_component.mako diff --git a/templates/webapps/tool_shed/repository_review/edit_component.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/edit_component.mako similarity index 100% rename from templates/webapps/tool_shed/repository_review/edit_component.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/edit_component.mako diff --git a/templates/webapps/tool_shed/repository_review/edit_review.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/edit_review.mako similarity index 100% rename from templates/webapps/tool_shed/repository_review/edit_review.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/edit_review.mako diff --git a/templates/webapps/tool_shed/repository_review/grid.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/grid.mako similarity index 100% rename from templates/webapps/tool_shed/repository_review/grid.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/grid.mako diff --git a/templates/webapps/tool_shed/repository_review/reviews_of_changeset_revision.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/reviews_of_changeset_revision.mako similarity index 100% rename from templates/webapps/tool_shed/repository_review/reviews_of_changeset_revision.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/reviews_of_changeset_revision.mako diff --git a/templates/webapps/tool_shed/repository_review/reviews_of_repository.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/reviews_of_repository.mako similarity index 100% rename from templates/webapps/tool_shed/repository_review/reviews_of_repository.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/reviews_of_repository.mako diff --git a/templates/webapps/tool_shed/repository_review/select_previous_review.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/select_previous_review.mako similarity index 100% rename from templates/webapps/tool_shed/repository_review/select_previous_review.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/repository_review/select_previous_review.mako diff --git a/templates/webapps/tool_shed/role/role.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/role/role.mako similarity index 100% rename from templates/webapps/tool_shed/role/role.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/role/role.mako diff --git a/templates/webapps/tool_shed/user/manage_email_alerts.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/user/manage_email_alerts.mako similarity index 100% rename from templates/webapps/tool_shed/user/manage_email_alerts.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/user/manage_email_alerts.mako diff --git a/templates/webapps/tool_shed/user/manage_info.mako b/lib/galaxy/web/framework/templates/webapps/tool_shed/user/manage_info.mako similarity index 100% rename from templates/webapps/tool_shed/user/manage_info.mako rename to lib/galaxy/web/framework/templates/webapps/tool_shed/user/manage_info.mako