From 842d14a0e6fb9d4226012b91ad104b387bd36988 Mon Sep 17 00:00:00 2001 From: Thoba Lose Date: Tue, 13 Jun 2017 14:48:42 +0200 Subject: [PATCH 1/2] Upgrade IE to Neo4j:3.1 --- .../neo/config/allowed_images.yml.sample | 2 +- .../plugins/interactive_environments/neo/config/neo.ini.sample | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/config/plugins/interactive_environments/neo/config/allowed_images.yml.sample b/config/plugins/interactive_environments/neo/config/allowed_images.yml.sample index 872faf9ecaf..eaac6271033 100644 --- a/config/plugins/interactive_environments/neo/config/allowed_images.yml.sample +++ b/config/plugins/interactive_environments/neo/config/allowed_images.yml.sample @@ -6,6 +6,6 @@ # appropriate `apt-get/pip install` statements. --- - - image: thoba/neo4j_galaxy_ie:v1 + image: thoba/neo4j_galaxy_ie:3.1 description: | Neo4j is a highly scalable, robust native graph database. diff --git a/config/plugins/interactive_environments/neo/config/neo.ini.sample b/config/plugins/interactive_environments/neo/config/neo.ini.sample index 4027edc1e4c..019b5456ad8 100644 --- a/config/plugins/interactive_environments/neo/config/neo.ini.sample +++ b/config/plugins/interactive_environments/neo/config/neo.ini.sample @@ -18,7 +18,7 @@ # The image argument was moved to "allowed_images.yml.sample" # Additional arguments that are passed to the `docker run` command. -command_inject = --sig-proxy=true -e DEBUG=false -e DEFAULT_CONTAINER_RUNTIME=120 -e NEO4J_UID=$(id -u) -e NEO4J_GID=$(id -g) +command_inject = --sig-proxy=true -e DEBUG=false -e DEFAULT_CONTAINER_RUNTIME=120 -e USER_UID=$(id -u) -e USER_GID=$(id -g) # URL to access the Galaxy API with from the spawn Docker containter, if empty From 009f44c25f9c4ebb467f7c6ceb30b605a0fae923 Mon Sep 17 00:00:00 2001 From: Thoba Lose Date: Wed, 21 Jun 2017 21:24:27 +0200 Subject: [PATCH 2/2] using sanbi-sa image. --- .gitignore | 1 + .../neo/config/allowed_images.yml.sample | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index a32c10efd74..4bdb3cd4fbc 100644 --- a/.gitignore +++ b/.gitignore @@ -135,3 +135,4 @@ doc/source/dev/schema.rst .DS_Store *.rej *~ +.idea diff --git a/config/plugins/interactive_environments/neo/config/allowed_images.yml.sample b/config/plugins/interactive_environments/neo/config/allowed_images.yml.sample index eaac6271033..b63b71624b8 100644 --- a/config/plugins/interactive_environments/neo/config/allowed_images.yml.sample +++ b/config/plugins/interactive_environments/neo/config/allowed_images.yml.sample @@ -6,6 +6,6 @@ # appropriate `apt-get/pip install` statements. --- - - image: thoba/neo4j_galaxy_ie:3.1 + image: quay.io/sanbi-sa/neo_ie:3.1 description: | Neo4j is a highly scalable, robust native graph database.