From 7d15049c48d030a6d7a21e039bfb91baf2094036 Mon Sep 17 00:00:00 2001
From: mvdbeek <m.vandenbeek@gmail.com>
Date: Fri, 19 Jan 2018 20:16:22 +0100
Subject: [PATCH] Fix bam conversion test tool

Starting with 16344a6 we attempt to set metadata also for files that have no
content. BAM files need to contain at least a header. To avoid failing tests we
only create the appropriate output based on the input.
---
 test/functional/tools/sam_to_bam_native.xml | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/test/functional/tools/sam_to_bam_native.xml b/test/functional/tools/sam_to_bam_native.xml
index aed8f24892c..6c515ebf3bd 100644
--- a/test/functional/tools/sam_to_bam_native.xml
+++ b/test/functional/tools/sam_to_bam_native.xml
@@ -23,8 +23,12 @@
         <param name="input3" type="data" format="bam" label="Sorted BAM file" optional="true"/>
     </inputs>
     <outputs>
-        <data name="bam_native_output" format="bam_native"/>
-        <data name="bam_output" format="bam"/>
+        <data name="bam_native_output" format="bam_native">
+            <filter>input1 or input2</filter>
+        </data>
+        <data name="bam_output" format="bam">
+            <filter>input3</filter>
+        </data>
     </outputs>
     <tests>
         <!-- Test that bam native output won't be sorted-->