diff --git a/.hgtags b/.hgtags index 6ca402c45c9..fa371c7744d 100644 --- a/.hgtags +++ b/.hgtags @@ -9,4 +9,4 @@ a4113cc1cb5eaa68091c9a73375f00555b66dd11 release_2013.01.13 9e53251b0b7e93b9563008a2b112f2e815a04bbc release_2014.04.14 68a8b0397947c732b28207d465d3f3c4e2a7a8a0 latest_2014.04.14 7e257c7b10badb65772b1528cb61d58175a42e47 release_2014.06.02 -9b78595ec1142d75930dbfffd8baeaa689cb4c6c latest_2014.06.02 +8a863a311a6c9f14b302799bffcf94df9186fef7 latest_2014.06.02 diff --git a/config/plugins/visualizations/charts/static/app.js b/config/plugins/visualizations/charts/static/app.js index 96b289d3aaf..215e0c67840 100644 --- a/config/plugins/visualizations/charts/static/app.js +++ b/config/plugins/visualizations/charts/static/app.js @@ -1,26 +1,26 @@ // dependencies define(['mvc/ui/ui-modal', 'mvc/ui/ui-portlet', 'plugin/library/ui', 'utils/utils', - 'plugin/library/jobs', 'plugin/library/datasets', 'plugin/library/storage', + 'plugin/library/jobs', 'plugin/library/datasets', 'plugin/library/storage', 'plugin/library/deferred', 'plugin/views/viewer', 'plugin/views/editor', 'plugin/models/config', 'plugin/models/chart', 'plugin/charts/types'], - function( Modal, Portlet, Ui, Utils, Jobs, Datasets, Storage, + function( Modal, Portlet, Ui, Utils, Jobs, Datasets, Storage, Deferred, ViewerView, EditorView, Config, Chart, Types ) { -// widget -return Backbone.View.extend( -{ +/** + * Main application class. + */ +return Backbone.View.extend({ // initialize - initialize: function(options) - { + initialize: function(options){ // deactivate all debugs outputs //window.console.debug = function() {}; // link options this.options = options; - + // link galaxy modal or create one if (Galaxy && Galaxy.modal) { this.modal = Galaxy.modal; @@ -41,6 +41,7 @@ return Backbone.View.extend( this.jobs = new Jobs(this); this.datasets = new Datasets(this); this.storage = new Storage(this); + this.deferred = new Deferred(); // // views @@ -62,7 +63,7 @@ return Backbone.View.extend( // draw chart var self = this; - this.chart.deferred.execute(function() { + this.deferred.execute(function() { self.chart.trigger('redraw'); }); } @@ -100,19 +101,6 @@ return Backbone.View.extend( console.debug('FAILED App:chartPath() - Invalid format: ' + chart_type); } return undefined; - }, - - // execute command - execute: function(options) { - }, - - // unload - onunload: function() { - }, - - // log - log: function(location, message) { - console.log(location + ' ' + message); } }); diff --git a/config/plugins/visualizations/charts/static/build-app.js b/config/plugins/visualizations/charts/static/build-app.js index efedde934fb..6604eda13b5 100644 --- a/config/plugins/visualizations/charts/static/build-app.js +++ b/config/plugins/visualizations/charts/static/build-app.js @@ -3,4 +3,4 @@ // (c) 2009-2013 Jeremy Ashkenas, DocumentCloud Inc. // Underscore may be freely distributed under the MIT license. -define("mvc/ui/ui-modal",[],function(){var e=Backbone.View.extend({elMain:"body",optionsDefault:{title:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null},buttonList:{},initialize:function(e){e&&this._create(e)},show:function(e){this.initialize(e),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width),this.visible?this.$el.show():this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback()},enableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!0)},showButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).show()},hideButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).hide()},getButton:function(e){var t=this.buttonList[e];return this.$buttons.find("#"+t)},scrollTop:function(){return this.$body.scrollTop()},_create:function(e){var t=this;this.options=_.defaults(e,this.optionsDefault),this.options.body=="progress"&&(this.options.body=$('
')),this.$el&&(this.$el.remove(),$(document).off("keyup.ui-modal")),this.setElement(this._template(this.options.title)),this.$dialog=this.$el.find(".modal-dialog"),this.$body=this.$el.find(".modal-body"),this.$footer=this.$el.find(".modal-footer"),this.$buttons=this.$el.find(".buttons"),this.$backdrop=this.$el.find(".modal-backdrop"),this.$body.html(this.options.body),this.options.backdrop||this.$backdrop.removeClass("in");if(this.options.buttons){this.buttonList={};var n=0;$.each(this.options.buttons,function(e,r){var i="button-"+n++;t.$buttons.append($('').text(e).click(r)).append(" "),t.buttonList[e]=i})}else this.$footer.hide();$(this.elMain).append($(this.el)),this.options.closing_events&&($(document).on("keyup.ui-modal",function(e){e.keyCode==27&&t.hide()}),this.$el.find(".modal-backdrop").on("click",function(){t.hide()}))},_template:function(e){return'

'+e+"

"+"
"+'
'+'
'+'
'+"
"+""+"
"}});return{View:e}}),function(){var e=this,t=e._,n={},r=Array.prototype,i=Object.prototype,s=Function.prototype,o=r.push,u=r.slice,a=r.concat,f=i.toString,l=i.hasOwnProperty,c=r.forEach,h=r.map,p=r.reduce,d=r.reduceRight,v=r.filter,m=r.every,g=r.some,y=r.indexOf,b=r.lastIndexOf,w=Array.isArray,E=Object.keys,S=s.bind,x=function(e){if(e instanceof x)return e;if(!(this instanceof x))return new x(e);this._wrapped=e};typeof exports!="undefined"?(typeof module!="undefined"&&module.exports&&(exports=module.exports=x),exports._=x):e._=x,x.VERSION="1.4.4";var T=x.each=x.forEach=function(e,t,r){if(e==null)return;if(c&&e.forEach===c)e.forEach(t,r);else if(e.length===+e.length){for(var i=0,s=e.length;i2;e==null&&(e=[]);if(p&&e.reduce===p)return r&&(t=x.bind(t,r)),i?e.reduce(t,n):e.reduce(t);T(e,function(e,s,o){i?n=t.call(r,n,e,s,o):(n=e,i=!0)});if(!i)throw new TypeError(N);return n},x.reduceRight=x.foldr=function(e,t,n,r){var i=arguments.length>2;e==null&&(e=[]);if(d&&e.reduceRight===d)return r&&(t=x.bind(t,r)),i?e.reduceRight(t,n):e.reduceRight(t);var s=e.length;if(s!==+s){var o=x.keys(e);s=o.length}T(e,function(u,a,f){a=o?o[--s]:--s,i?n=t.call(r,n,e[a],a,f):(n=e[a],i=!0)});if(!i)throw new TypeError(N);return n},x.find=x.detect=function(e,t,n){var r;return C(e,function(e,i,s){if(t.call(n,e,i,s))return r=e,!0}),r},x.filter=x.select=function(e,t,n){var r=[];return e==null?r:v&&e.filter===v?e.filter(t,n):(T(e,function(e,i,s){t.call(n,e,i,s)&&r.push(e)}),r)},x.reject=function(e,t,n){return x.filter(e,function(e,r,i){return!t.call(n,e,r,i)},n)},x.every=x.all=function(e,t,r){t||(t=x.identity);var i=!0;return e==null?i:m&&e.every===m?e.every(t,r):(T(e,function(e,s,o){if(!(i=i&&t.call(r,e,s,o)))return n}),!!i)};var C=x.some=x.any=function(e,t,r){t||(t=x.identity);var i=!1;return e==null?i:g&&e.some===g?e.some(t,r):(T(e,function(e,s,o){if(i||(i=t.call(r,e,s,o)))return n}),!!i)};x.contains=x.include=function(e,t){return e==null?!1:y&&e.indexOf===y?e.indexOf(t)!=-1:C(e,function(e){return e===t})},x.invoke=function(e,t){var n=u.call(arguments,2),r=x.isFunction(t);return x.map(e,function(e){return(r?t:e[t]).apply(e,n)})},x.pluck=function(e,t){return x.map(e,function(e){return e[t]})},x.where=function(e,t,n){return x.isEmpty(t)?n?void 0:[]:x[n?"find":"filter"](e,function(e){for(var n in t)if(t[n]!==e[n])return!1;return!0})},x.findWhere=function(e,t){return x.where(e,t,!0)},x.max=function(e,t,n){if(!t&&x.isArray(e)&&e[0]===+e[0]&&e.length<65535)return Math.max.apply(Math,e);if(!t&&x.isEmpty(e))return-Infinity;var r={computed:-Infinity,value:-Infinity};return T(e,function(e,i,s){var o=t?t.call(n,e,i,s):e;o>=r.computed&&(r={value:e,computed:o})}),r.value},x.min=function(e,t,n){if(!t&&x.isArray(e)&&e[0]===+e[0]&&e.length<65535)return Math.min.apply(Math,e);if(!t&&x.isEmpty(e))return Infinity;var r={computed:Infinity,value:Infinity};return T(e,function(e,i,s){var o=t?t.call(n,e,i,s):e;or||n===void 0)return 1;if(n>>1;n.call(r,e[u])=0})})},x.difference=function(e){var t=a.apply(r,u.call(arguments,1));return x.filter(e,function(e){return!x.contains(t,e)})},x.zip=function(){var e=u.call(arguments),t=x.max(x.pluck(e,"length")),n=new Array(t);for(var r=0;r=0;n--)t=[e[n].apply(this,t)];return t[0]}},x.after=function(e,t){return e<=0?t():function(){if(--e<1)return t.apply(this,arguments)}},x.keys=E||function(e){if(e!==Object(e))throw new TypeError("Invalid object");var t=[];for(var n in e)x.has(e,n)&&t.push(n);return t},x.values=function(e){var t=[];for(var n in e)x.has(e,n)&&t.push(e[n]);return t},x.pairs=function(e){var t=[];for(var n in e)x.has(e,n)&&t.push([n,e[n]]);return t},x.invert=function(e){var t={};for(var n in e)x.has(e,n)&&(t[e[n]]=n);return t},x.functions=x.methods=function(e){var t=[];for(var n in e)x.isFunction(e[n])&&t.push(n);return t.sort()},x.extend=function(e){return T(u.call(arguments,1),function(t){if(t)for(var n in t)e[n]=t[n]}),e},x.pick=function(e){var t={},n=a.apply(r,u.call(arguments,1));return T(n,function(n){n in e&&(t[n]=e[n])}),t},x.omit=function(e){var t={},n=a.apply(r,u.call(arguments,1));for(var i in e)x.contains(n,i)||(t[i]=e[i]);return t},x.defaults=function(e){return T(u.call(arguments,1),function(t){if(t)for(var n in t)e[n]===void 0&&(e[n]=t[n])}),e},x.clone=function(e){return x.isObject(e)?x.isArray(e)?e.slice():x.extend({},e):e},x.tap=function(e,t){return t(e),e};var M=function(e,t,n,r){if(e===t)return e!==0||1/e==1/t;if(e==null||t==null)return e===t;e instanceof x&&(e=e._wrapped),t instanceof x&&(t=t._wrapped);var i=f.call(e);if(i!=f.call(t))return!1;switch(i){case"[object String]":return e==String(t);case"[object Number]":return e!=+e?t!=+t:e==0?1/e==1/t:e==+t;case"[object Date]":case"[object Boolean]":return+e==+t;case"[object RegExp]":return e.source==t.source&&e.global==t.global&&e.multiline==t.multiline&&e.ignoreCase==t.ignoreCase}if(typeof e!="object"||typeof t!="object")return!1;var s=n.length;while(s--)if(n[s]==e)return r[s]==t;n.push(e),r.push(t);var o=0,u=!0;if(i=="[object Array]"){o=e.length,u=o==t.length;if(u)while(o--)if(!(u=M(e[o],t[o],n,r)))break}else{var a=e.constructor,l=t.constructor;if(a!==l&&!(x.isFunction(a)&&a instanceof a&&x.isFunction(l)&&l instanceof l))return!1;for(var c in e)if(x.has(e,c)){o++;if(!(u=x.has(t,c)&&M(e[c],t[c],n,r)))break}if(u){for(c in t)if(x.has(t,c)&&!(o--))break;u=!o}}return n.pop(),r.pop(),u};x.isEqual=function(e,t){return M(e,t,[],[])},x.isEmpty=function(e){if(e==null)return!0;if(x.isArray(e)||x.isString(e))return e.length===0;for(var t in e)if(x.has(e,t))return!1;return!0},x.isElement=function(e){return!!e&&e.nodeType===1},x.isArray=w||function(e){return f.call(e)=="[object Array]"},x.isObject=function(e){return e===Object(e)},T(["Arguments","Function","String","Number","Date","RegExp"],function(e){x["is"+e]=function(t){return f.call(t)=="[object "+e+"]"}}),x.isArguments(arguments)||(x.isArguments=function(e){return!!e&&!!x.has(e,"callee")}),typeof /./!="function"&&(x.isFunction=function(e){return typeof e=="function"}),x.isFinite=function(e){return isFinite(e)&&!isNaN(parseFloat(e))},x.isNaN=function(e){return x.isNumber(e)&&e!=+e},x.isBoolean=function(e){return e===!0||e===!1||f.call(e)=="[object Boolean]"},x.isNull=function(e){return e===null},x.isUndefined=function(e){return e===void 0},x.has=function(e,t){return l.call(e,t)},x.noConflict=function(){return e._=t,this},x.identity=function(e){return e},x.times=function(e,t,n){var r=Array(e);for(var i=0;i":">",'"':""","'":"'","/":"/"}};_.unescape=x.invert(_.escape);var D={escape:new RegExp("["+x.keys(_.escape).join("")+"]","g"),unescape:new RegExp("("+x.keys(_.unescape).join("|")+")","g")};x.each(["escape","unescape"],function(e){x[e]=function(t){return t==null?"":(""+t).replace(D[e],function(t){return _[e][t]})}}),x.result=function(e,t){if(e==null)return void 0;var n=e[t];return x.isFunction(n)?n.call(e):n},x.mixin=function(e){T(x.functions(e),function(t){var n=x[t]=e[t];x.prototype[t]=function(){var e=[this._wrapped];return o.apply(e,arguments),F.call(this,n.apply(x,e))}})};var P=0;x.uniqueId=function(e){var t=++P+"";return e?e+t:t},x.templateSettings={evaluate:/<%([\s\S]+?)%>/g,interpolate:/<%=([\s\S]+?)%>/g,escape:/<%-([\s\S]+?)%>/g};var H=/(.)^/,B={"'":"'","\\":"\\","\r":"r","\n":"n"," ":"t","\u2028":"u2028","\u2029":"u2029"},j=/\\|'|\r|\n|\t|\u2028|\u2029/g;x.template=function(e,t,n){var r;n=x.defaults({},n,x.templateSettings);var i=new RegExp([(n.escape||H).source,(n.interpolate||H).source,(n.evaluate||H).source].join("|")+"|$","g"),s=0,o="__p+='";e.replace(i,function(t,n,r,i,u){return o+=e.slice(s,u).replace(j,function(e){return"\\"+B[e]}),n&&(o+="'+\n((__t=("+n+"))==null?'':_.escape(__t))+\n'"),r&&(o+="'+\n((__t=("+r+"))==null?'':__t)+\n'"),i&&(o+="';\n"+i+"\n__p+='"),s=u+t.length,t}),o+="';\n",n.variable||(o="with(obj||{}){\n"+o+"}\n"),o="var __t,__p='',__j=Array.prototype.join,print=function(){__p+=__j.call(arguments,'');};\n"+o+"return __p;\n";try{r=new Function(n.variable||"obj","_",o)}catch(u){throw u.source=o,u}if(t)return r(t,x);var a=function(e){return r.call(this,e,x)};return a.source="function("+(n.variable||"obj")+"){\n"+o+"}",a},x.chain=function(e){return x(e).chain()};var F=function(e){return this._chain?x(e).chain():e};x.mixin(x),T(["pop","push","reverse","shift","sort","splice","unshift"],function(e){var t=r[e];x.prototype[e]=function(){var n=this._wrapped;return t.apply(n,arguments),(e=="shift"||e=="splice")&&n.length===0&&delete n[0],F.call(this,n)}}),T(["concat","join","slice"],function(e){var t=r[e];x.prototype[e]=function(){return F.call(this,t.apply(this._wrapped,arguments))}}),x.extend(x.prototype,{chain:function(){return this._chain=!0,this},value:function(){return this._wrapped}})}.call(this),define("libs/underscore",function(e){return function(){var t,n;return t||e._}}(this)),define("utils/utils",["libs/underscore"],function(e){function t(e,t,r){n("GET",e,{},t,r)}function n(e,t,n,r,i){if(e=="GET"||e=="DELETE")t.indexOf("?")==-1?t+="?":t+="&",t+=$.param(n);var s=new XMLHttpRequest;s.open(e,t,!0),s.setRequestHeader("Accept","application/json"),s.setRequestHeader("Cache-Control","no-cache"),s.setRequestHeader("X-Requested-With","XMLHttpRequest"),s.setRequestHeader("Content-Type","application/json"),s.onloadend=function(){var e=s.status;try{response=jQuery.parseJSON(s.responseText)}catch(t){response=s.responseText}e==200?r&&r(response):i&&i(response)},e=="GET"||e=="DELETE"?s.send():s.send(JSON.stringify(n))}function r(e,t){var n=$('
');n.appendTo(":eq(0)");var r=n.css(t);return n.remove(),r}function i(e){$('link[href^="'+e+'"]').length||$('').appendTo("head")}function s(t,n){return t?e.defaults(t,n):n}function o(e,t){var n="";if(e>=1e11)e/=1e11,n="TB";else if(e>=1e8)e/=1e8,n="GB";else if(e>=1e5)e/=1e5,n="MB";else if(e>=100)e/=100,n="KB";else{if(!(e>0))return"-";e*=10,n="b"}var r=Math.round(e)/10;return t?r+" "+n:""+r+" "+n}function u(){return"x"+Math.random().toString(36).substring(2,9)}function a(e){var t=$("

");return t.append(e),t}function f(){var e=new Date,t=(e.getHours()<10?"0":"")+e.getHours(),n=(e.getMinutes()<10?"0":"")+e.getMinutes(),r=e.getDate()+"/"+(e.getMonth()+1)+"/"+e.getFullYear()+", "+t+":"+n;return r}return{cssLoadFile:i,cssGetAttribute:r,get:t,merge:s,bytesToString:o,uuid:u,time:f,wrap:a,request:n}}),define("mvc/ui/ui-portlet",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,placement:"bottom"},$title:null,$content:null,$buttons:null,$operations:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$content=this.$el.find("#content"),this.$title=this.$el.find("#portlet-header-text");var n=this.$el.find("#portlet-content");this.options.scrollable?n.addClass("scroll"):this.options.title?n.addClass("no-scroll"):n.addClass("no-scroll-no-title"),this.options.nopadding&&(n.css("padding","0px"),this.$content.css("padding","0px")),this.$buttons=$(this.el).find("#buttons");if(this.options.buttons){var r=this;$.each(this.options.buttons,function(e,t){t.$el.prop("id",e),r.$buttons.append(t.$el)})}else this.$buttons.remove();this.$operations=$(this.el).find("#operations");if(this.options.operations){var r=this;$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$operations.append(t.$el)})}this.options.body&&this.append(this.options.body)},append:function(t){this.$content.append(e.wrap(t))},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},enableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!1)},disableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!0)},hideOperation:function(e){this.$operations.find("#"+e).hide()},showOperation:function(e){this.$operations.find("#"+e).show()},setOperation:function(e,t){var n=this.$operations.find("#"+e);n.off("click"),n.on("click",t)},title:function(e){var t=this.$title;return e&&t.html(e),t.html()},_template:function(e){var t='
';return e.title&&(t+='

',e.icon&&(t+=' '),t+=''+e.title+""+"

"+"
"),t+='
',e.placement=="top"&&(t+='
'),t+='
',e.placement=="bottom"&&(t+='
'),t+="
",t}});return{View:t}}),define("plugin/library/ui-select",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{id:"",cls:"",empty:"No data available",visible:!0,wait:!1},selected:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.selected=this.options.value,this.setElement(this._template(this.options)),this.$select=this.$el.find("#select"),this.$icon=this.$el.find("#icon");var n=this;this.$select.on("change",function(){n.value(n.$select.val())}),this.on("change",function(){n.options.onchange&&n.options.onchange(n.value())}),this._refresh(),this.options.visible||this.hide(),this.options.wait?this.wait():this.show()},value:function(e){var t=this.selected;e!==undefined&&(this.selected=e,this.$select.val(e));var n=this.selected;return n&&n!=t&&this.options.onchange&&this.options.onchange(n),n},first:function(){var e=this.$select.find("option");return e.length>0?e.val():undefined},text:function(){return this.$select.find("option:selected").text()},show:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-caret-down"),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-spinner fa-spin"),this.$select.hide()},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},add:function(e){this.$select.append(this._templateOption(e)),this._refresh()},del:function(e){this.$select.find("option[value="+e+"]").remove(),this.$select.trigger("change"),this._refresh()},update:function(e){this.$select.find("option").remove();for(var t in e)this.$select.append(this._templateOption(e[t]));this._refresh()},setOnChange:function(e){this.options.onchange=e},exists:function(e){return this.$select.find("option[value="+e+"]").length>0},_refresh:function(){this.$select.find("option[value=null]").remove();var e=this.$select.find("option").length;e==0?(this.disable(),this.$select.append(this._templateOption({value:"null",label:this.options.empty}))):this.enable(),this.selected&&this.$select.val(this.selected)},_templateOption:function(e){return'"},_template:function(e){var t='
'+'
'+''+"
"+'
",t}});return{View:t}}),define("plugin/library/ui-button-menu",["utils/utils"],function(e){return Backbone.View.extend({optionsDefault:{id:"",title:"","float":"right",icon:null,onclick:null,cls:"icon-btn",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""},$menu:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='
  • ';return e.icon&&(t+=''),t+=" "+e.title+""+"
    • ",t},_templateMenu:function(){return''},_templateDivider:function(){return'
  • '},_template:function(e){var t="";e.title&&(t="width: auto;");var n='",n}})}),define("plugin/library/ui",["utils/utils","plugin/library/ui-select","plugin/library/ui-button-menu","mvc/ui/ui-modal"],function(e,t,n,r){var i=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return''}}),s=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'"},value:function(){return options.title}}),o=Backbone.View.extend({optionsDefault:{"float":"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'
     '+e.title+"
    "}}),u=Backbone.View.extend({optionsDefault:{id:null,title:"","float":"right",cls:"btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='",t}}),a=Backbone.View.extend({optionsDefault:{id:null,title:"","float":"right",cls:"icon-btn",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t="";e.title&&(t="width: auto;");var n='
    ';return e.title?n+='
     '+''+e.title+""+"
    ":n+='',n+="
    ",n}}),f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'"}}),l=Backbone.View.extend({optionsDefault:{message:"",status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement("
    ")},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn();if(!t.persistent){var n=this;window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return'
    '}}),c=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'
    '+'"+"
    "+"
    "}}),h=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0,cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return''}}),p=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0,cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return''}}),d=Backbone.View.extend({optionsDefault:{value:"",visible:!0,cls:"",data:[],id:e.uuid()},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.visible||this.$el.hide(),this.options.value&&this.value(this.options.value),this.current=this.options.value;var n=this;this.$el.find("input").on("change",function(){n.value(n._getValue())})},value:function(e){var t=this.current;e!==undefined&&(this.$el.find("label").removeClass("active"),this.$el.find('[value="'+e+'"]').closest("label").addClass("active"),this.current=e);var n=this.current;return n!=t&&this.options.onchange&&this.options.onchange(this.current),this.current},_getValue:function(){var e=this.$el.find(":checked"),t=null;return e.length>0&&(t=e.val()),t},_template:function(e){var t='
    ';for(key in e.data){var n=e.data[key];t+='"}return t+="
    ",t}});return{Label:s,Button:u,Icon:o,ButtonIcon:a,Input:h,Anchor:f,Message:l,Searchbox:c,Select:t,ButtonMenu:n,Modal:r,Textarea:p,Image:i,RadioButton:d}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request("PUT",config.root+"api/histories/none/contents/"+r,{deleted:!0},function(){n._refreshHdas()}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request("POST",config.root+"api/tools",data,function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),this.app.storage.save(),o._wait(t,i,s)}},function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()})},_wait:function(t,n,r){var i=this;e.request("GET",config.root+"api/datasets/"+t.get("dataset_id_job"),{},function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function h(i){c._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++l
    '},_templateContainer:function(e,t){return'
    '+'"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i",{id:"viewport-form",method:"post",action:"http://export.highcharts.com/",display:"none"}),r.append(i)),i.empty();for(name in n){var s=$("",{type:"hidden",name:name,value:n[name]});i.append(s)}try{i.submit()}catch(o){console.log(o)}}function a(e){if(e.$el.find("svg").length==0&&e.error){e.error("No SVG found. This chart type does not support SVG/PDF export.");return}var t=e.$el,n=t.find("svg").length,r=parseInt(t.find("svg").first().css("height")),i=parseInt(t.find("svg").first().css("width")),s=new XMLSerializer,u=$("");u.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:i*n,height:r});var a="",f=0;return t.find("svg").each(function(){var e=$(this).clone();o(e);var t=$('');t.append(e.find("g").first()),u.append(t),f+=i}),{string:s.serializeToString(u[0]),height:r,width:i}}return{createPNG:t,createSVG:s,createPDF:u}}),define("plugin/views/viewer",["utils/utils","plugin/library/ui","mvc/ui/ui-portlet","plugin/models/group","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i,s){return Backbone.View.extend({initialize:function(e,r){this.app=e,this.chart=this.app.chart,this.viewport_view=new i(e);var o=this;this.message=new t.Message;var u=new t.ButtonMenu({icon:"fa-camera",title:"Screenshot",tooltip:"Download as PNG, SVG or PDF file"});u.addMenu({id:"button-png",title:"Save as PNG",icon:"fa-file",onclick:function(){o._wait(o.chart,function(){s.createPNG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-svg",title:"Save as SVG",icon:"fa-file-text-o",onclick:function(){o._wait(o.chart,function(){s.createSVG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-png",title:"Save as PDF",icon:"fa-file-o",onclick:function(){o.app.modal.show({title:"Send chart data for PDF creation",body:"Galaxy does not provide integrated PDF export scripts. You may click 'Continue' to create the PDF by using a 3rd party service (https://export.highcharts.com).",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o._wait(o.chart,function(){s.createPDF({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}})}}),this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",scrollable:!1,operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button_menu:u}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){e.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),_.size(this.list)==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n);if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)})},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#tab-content-"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list)this.list[e]&&this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find(".tab-element").removeClass("active"),this.$el.find(".tab-pane").removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#tab-content-"+e).addClass("active"))},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},_template:function(e){return'
    '},_template_tab_new:function(e){return'
  • '+e.title_new+""+"
    • "},_template_tab:function(e){var t='
  • '+''+''+e.title+"";return e.ondel&&(t+=''),t+="
    • ",t},_template_tab_content:function(e){return'
    '}});return{View:t}}),define("plugin/library/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(t));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=$("")},addHeader:function(e){var t=$("");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("")},add:function(e,t,n){var r=$("");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.del(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$(""),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'
    '+""+''+"
    "+""+e.content+""+"
    "}});return{View:t}}),define("plugin/views/group",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("
    ");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.chart.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.chart.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('
    ');this.options.title&&s.append(n.wrap(this.table_title.$el)),s.append(n.wrap(this.table.$el)),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("
    ");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("
    ");u.append(s.$el),n.info&&u.append('
    '+n.info+"
    "),this.options.style=="bold"?(this.table.add((new t.Label({title:n.title,cls:"form-label"})).$el),this.table.add(u)):(this.table.add(''+n.title+"","25%"),this.table.add(u))}else this.table.add('
    '+n.title+":
    "),this.table.add($("
    "));this.table.append(e),n.hide&&this.table.get(e).hide()}});return{View:r}}),define("plugin/views/settings",["plugin/library/ui","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View(e,{content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refresh()})},_refresh:function(){var e=this.chart.definition;if(!e)return;this.form.title(e.category+" - "+e.title+":"),this.form.update(e.settings,this.chart.settings)}})}),define("plugin/views/types",["utils/utils","plugin/library/ui"],function(e,t){return Backbone.View.extend({optionsDefault:{onchange:null,ondblclick:null},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(n,r){var i=this;this.app=n,this.options=e.merge(r,this.optionsDefault);var s=$('
    ');s.append(e.wrap((new t.Label({title:"How many data points would you like to analyze?"})).$el)),this.library=new t.RadioButton({data:[{label:"Few (<500)",value:"small"},{label:"Some (<10k)",value:"medium"},{label:"Many (>10k)",value:"large"}],onchange:function(e){i._filter(e)}}),s.append(e.wrap(this.library.$el)),this.setElement(s),this._render(),this.library.value("small")},value:function(e){var t=this.$el.find(".current").attr("id");e!==undefined&&(this.$el.find(".current").removeClass("current"),this.$el.find("#"+e).addClass("current"));var n=this.$el.find(".current").attr("id");return n===undefined?null:(n!=t&&this.options.onchange&&this.options.onchange(e),n)},_filter:function(e){this.$el.find(".header").hide();var t=this.app.types.attributes;for(var n in t){var r=t[n],i=this.$el.find("#"+n),s=this.$el.find("#types-header-"+this.categories_index[r.category]),o=r.keywords||"";o.indexOf(e)>=0?(i.show(),s.show()):i.hide()}},_render:function(){this.categories={},this.categories_index={};var t=0,n=this.app.types.attributes;for(var r in n){var i=n[r],s=i.category;this.categories[s]||(this.categories[s]={},this.categories_index[s]=t++),this.categories[s][r]=i}for(var s in this.categories){var o=$('
    ');o.append(e.wrap(this._template_header({id:"types-header-"+this.categories_index[s],title:s})));for(var r in this.categories[s]){var i=this.categories[s][r],u=i.title+" ("+i.library+")";i.zoomable&&(u=''+u),o.append(e.wrap(this._template_item({id:r,title:u,url:config.app_root+"charts/"+this.app.chartPath(r)+"/logo.png"})))}this.$el.append(e.wrap(o))}},_onclick:function(e){var t=this.value(),n=$(e.target).closest(".item").attr("id");n!=""&&n&&t!=n&&this.value(n)},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_template_header:function(e){return'
    '+"• "+e.title+"
    "},_template_item:function(e){return'
    '+''+'
    '+e.title+"
    "+"
    "}})}),define("plugin/views/editor",["mvc/ui/ui-tabs","plugin/library/ui","mvc/ui/ui-portlet","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings","plugin/views/types"],function(e,t,n,r,i,s,o,u,a){return Backbone.View.extend({optionsDefault:{header:!0,content:"No content available."},initialize:function(i,s){var o=this;this.app=i,this.chart=this.app.chart,this.options=r.merge(s,this.optionsDefault),this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Editor",operations:{save:new t.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o._saveChart()}}),back:new t.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Cancel",onclick:function(){o.app.go("viewer"),o.app.storage.load()}})}}),this.types=new a(i,{onchange:function(e){var t=o.app.types.get(e);t||console.debug("FAILED - Editor::onchange() - Chart type not supported."),o.chart.definition=t,o.chart.settings.clear(),o.chart.set({type:e}),o.chart.set("modified",!0),console.debug("Editor::onchange() - Switched chart type.")},ondblclick:function(e){o._saveChart()}}),this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)}}),this.title=new t.Input({placeholder:"Chart title",onchange:function(){o.chart.set("title",o.title.value())}});var f=$("
    ");f.append(r.wrap((new t.Label({title:"Provide a chart title:"})).$el)),f.append(r.wrap(this.title.$el)),f.append(r.wrap(this.types.$el)),this.tabs.add({id:"main",title:"Start",$el:f}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.portlet.append(this.message.$el),this.portlet.append(this.tabs.$el),this.setElement(this.portlet.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o._refreshTitle()}),this.chart.on("change:type",function(e){o.types.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.chart.on("redraw",function(e){o.portlet.showOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e),this.title.value(e)},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Data label"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e});this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","nvd3_bar"),this.chart.set("dataset_id",this.app.options.config.dataset_id),this.chart.set("title","New Chart"),this.portlet.hideOperation("back")},_saveChart:function(){this.chart.set({type:this.types.value(),title:this.title.value(),date:r.time()});if(this.chart.groups.length==0){this.message.update({message:"Please select data columns before drawing the chart."});var e=this._addGroupModel();this.tabs.show(e.id);return}var t=this,n=!0,i=this.chart.definition;this.chart.groups.each(function(e){if(!n)return;for(var r in i.columns)if(e.attributes[r]=="null"){t.message.update({status:"danger",message:"This chart type requires column types not found in your tabular file."}),t.tabs.show(e.id),n=!1;return}});if(!n)return;this.app.go("viewer");var t=this;this.chart.deferred.execute(function(){t.app.storage.save(),t.chart.trigger("redraw")})}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:500,query_timeout:100}})}),define("plugin/charts/forms/default",[],function(){return{title:"",category:"",library:"",tag:"",keywords:"",query_limit:0,settings:{separator_x:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["x_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["x_axis_precision"]}},{label:"Float",value:"f",operations:{show:["x_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["x_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["x_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["x_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["x_axis_precision"]}}]},x_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_y:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["y_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["y_axis_precision"]}},{label:"Float",value:"f",operations:{show:["y_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["y_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["y_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["y_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["y_axis_precision"]}}]},y_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"true",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{title:"Use multi-panels",info:"Would you like to separate your data into individual panels?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}}}),function(){function t(e,t){return(new Date(t,e+1,0)).getDate()}function n(e,t,n){return function(r,i,s){var o=e(r),u=[];o1)while(op||r>d||d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined||a){if(l&&d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined&&d3.event.relatedTarget.className.match(t.nvPointerEventsClass))return;u.elementMouseout({mouseX:n,mouseY:r}),c.renderGuideLine(null);return}var f=s.invert(n);u.elementMousemove({mouseX:n,mouseY:r,pointXValue:f}),d3.event.type==="dblclick"&&u.elementDblclick({mouseX:n,mouseY:r,pointXValue:f})}var h=d3.select(this),p=n||960,d=r||400,v=h.selectAll("g.nv-wrap.nv-interactiveLineLayer").data([o]),m=v.enter().append("g").attr("class"," nv-wrap nv-interactiveLineLayer");m.append("g").attr("class","nv-interactiveGuideLine");if(!f)return;f.on("mousemove",g,!0).on("mouseout",g,!0).on("dblclick",g),c.renderGuideLine=function(t){if(!a)return;var n=v.select(".nv-interactiveGuideLine").selectAll("line").data(t!=null?[e.utils.NaNtoZero(t)]:[],String);n.enter().append("line").attr("class","nv-guideline").attr("x1",function(e){return e}).attr("x2",function(e){return e}).attr("y1",d).attr("y2",0),n.exit().remove()}})}var t=e.models.tooltip(),n=null,r=null,i={left:0,top:0},s=d3.scale.linear(),o=d3.scale.linear(),u=d3.dispatch("elementMousemove","elementMouseout","elementDblclick"),a=!0,f=null,l=navigator.userAgent.indexOf("MSIE")!==-1;return c.dispatch=u,c.tooltip=t,c.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.left=typeof e.left!="undefined"?e.left:i.left,c):i},c.width=function(e){return arguments.length?(n=e,c):n},c.height=function(e){return arguments.length?(r=e,c):r},c.xScale=function(e){return arguments.length?(s=e,c):s},c.showGuideLine=function(e){return arguments.length?(a=e,c):a},c.svgContainer=function(e){return arguments.length?(f=e,c):f},c},e.interactiveBisect=function(e,t,n){if(!e instanceof Array)return null;typeof n!="function"&&(n=function(e,t){return e.x});var r=d3.bisector(n).left,i=d3.max([0,r(e,t)-1]),s=n(e[i],i);typeof s=="undefined"&&(s=i);if(s===t)return i;var o=d3.min([i+1,e.length-1]),u=n(e[o],o);return typeof u=="undefined"&&(u=o),Math.abs(u-t)>=Math.abs(s-t)?i:o},e.nearestValueIndex=function(e,t,n){var r=Infinity,i=null;return e.forEach(function(e,s){var o=Math.abs(t-e);o<=r&&oT.height?0:x}v.top=Math.abs(x-S.top),v.left=Math.abs(E.left-S.left)}t+=a.offsetLeft+v.left-2*a.scrollLeft,u+=a.offsetTop+v.top-2*a.scrollTop}return s&&s>0&&(u=Math.floor(u/s)*s),e.tooltip.calcTooltipPosition([t,u],r,i,h),w}var t=null,n=null,r="w",i=50,s=25,o=null,u=null,a=null,f=null,l={left:null,top:null},c=!0,h="nvtooltip-"+Math.floor(Math.random()*1e5),p="nv-pointer-events-none",d=function(e,t){return e},v=function(e){return e},m=function(e){if(t!=null)return t;if(e==null)return"";var n=d3.select(document.createElement("table")),r=n.selectAll("thead").data([e]).enter().append("thead");r.append("tr").append("td").attr("colspan",3).append("strong").classed("x-value",!0).html(v(e.value));var i=n.selectAll("tbody").data([e]).enter().append("tbody"),s=i.selectAll("tr").data(function(e){return e.series}).enter().append("tr").classed("highlight",function(e){return e.highlight});s.append("td").classed("legend-color-guide",!0).append("div").style("background-color",function(e){return e.color}),s.append("td").classed("key",!0).html(function(e){return e.key}),s.append("td").classed("value",!0).html(function(e,t){return d(e.value,t)}),s.selectAll("td").each(function(e){if(e.highlight){var t=d3.scale.linear().domain([0,1]).range(["#fff",e.color]),n=.6;d3.select(this).style("border-bottom-color",t(n)).style("border-top-color",t(n))}});var o=n.node().outerHTML;return e.footer!==undefined&&(o+="
    "+e.footer+"
    "),o},g=function(e){return e&&e.series&&e.series.length>0?!0:!1};return w.nvPointerEventsClass=p,w.content=function(e){return arguments.length?(t=e,w):t},w.tooltipElem=function(){return f},w.contentGenerator=function(e){return arguments.length?(typeof e=="function"&&(m=e),w):m},w.data=function(e){return arguments.length?(n=e,w):n},w.gravity=function(e){return arguments.length?(r=e,w):r},w.distance=function(e){return arguments.length?(i=e,w):i},w.snapDistance=function(e){return arguments.length?(s=e,w):s},w.classes=function(e){return arguments.length?(u=e,w):u},w.chartContainer=function(e){return arguments.length?(a=e,w):a},w.position=function(e){return arguments.length?(l.left=typeof e.left!="undefined"?e.left:l.left,l.top=typeof e.top!="undefined"?e.top:l.top,w):l},w.fixedTop=function(e){return arguments.length?(o=e,w):o},w.enabled=function(e){return arguments.length?(c=e,w):c},w.valueFormatter=function(e){return arguments.length?(typeof e=="function"&&(d=e),w):d},w.headerFormatter=function(e){return arguments.length?(typeof e=="function"&&(v=e),w):v},w.id=function(){return h},w},e.tooltip.show=function(t,n,r,i,s,o){var u=document.createElement("div");u.className="nvtooltip "+(o?o:"xy-tooltip");var a=s;if(!s||s.tagName.match(/g|svg/i))a=document.getElementsByTagName("body")[0];u.style.left=0,u.style.top=0,u.style.opacity=0,u.innerHTML=n,a.appendChild(u),s&&(t[0]=t[0]-s.scrollLeft,t[1]=t[1]-s.scrollTop),e.tooltip.calcTooltipPosition(t,r,i,u)},e.tooltip.findFirstNonSVGParent=function(e){while(e.tagName.match(/^g|svg$/i)!==null)e=e.parentNode;return e},e.tooltip.findTotalOffsetTop=function(e,t){var n=t;do isNaN(e.offsetTop)||(n+=e.offsetTop);while(e=e.offsetParent);return n},e.tooltip.findTotalOffsetLeft=function(e,t){var n=t;do isNaN(e.offsetLeft)||(n+=e.offsetLeft);while(e=e.offsetParent);return n},e.tooltip.calcTooltipPosition=function(t,n,r,i){var s=parseInt(i.offsetHeight),o=parseInt(i.offsetWidth),u=e.utils.windowSize().width,a=e.utils.windowSize().height,f=window.pageYOffset,l=window.pageXOffset,c,h;a=window.innerWidth>=document.body.scrollWidth?a:a-16,u=window.innerHeight>=document.body.scrollHeight?u:u-16,n=n||"s",r=r||20;var p=function(t){return e.tooltip.findTotalOffsetTop(t,h)},d=function(t){return e.tooltip.findTotalOffsetLeft(t,c)};switch(n){case"e":c=t[0]-o-r,h=t[1]-s/2;var v=d(i),m=p(i);vl?t[0]+r:l-v+c),mf+a&&(h=f+a-m+h-s);break;case"w":c=t[0]+r,h=t[1]-s/2;var v=d(i),m=p(i);v+o>u&&(c=t[0]-o-r),mf+a&&(h=f+a-m+h-s);break;case"n":c=t[0]-o/2-5,h=t[1]+r;var v=d(i),m=p(i);vu&&(c=c-o/2+5),m+s>f+a&&(h=f+a-m+h-s);break;case"s":c=t[0]-o/2,h=t[1]-s-r;var v=d(i),m=p(i);vu&&(c=c-o/2+5),f>m&&(h=f);break;case"none":c=t[0],h=t[1]-r;var v=d(i),m=p(i)}return i.style.left=c+"px",i.style.top=h+"px",i.style.opacity=1,i.style.position="absolute",i},e.tooltip.cleanup=function(){var e=document.getElementsByClassName("nvtooltip"),t=[];while(e.length)t.push(e[0]),e[0].style.transitionDelay="0 !important",e[0].style.opacity=0,e[0].className="nvtooltip-pending-removal";setTimeout(function(){while(t.length){var e=t.pop();e.parentNode.removeChild(e)}},500)}}(),e.utils.windowSize=function(){var e={width:640,height:480};return document.body&&document.body.offsetWidth&&(e.width=document.body.offsetWidth,e.height=document.body.offsetHeight),document.compatMode=="CSS1Compat"&&document.documentElement&&document.documentElement.offsetWidth&&(e.width=document.documentElement.offsetWidth,e.height=document.documentElement.offsetHeight),window.innerWidth&&window.innerHeight&&(e.width=window.innerWidth,e.height=window.innerHeight),e},e.utils.windowResize=function(e){if(e===undefined)return;var t=window.onresize;window.onresize=function(n){typeof t=="function"&&t(n),e(n)}},e.utils.getColor=function(t){return arguments.length?Object.prototype.toString.call(t)==="[object Array]"?function(e,n){return e.color||t[n%t.length]}:t:e.utils.defaultColor()},e.utils.defaultColor=function(){var e=d3.scale.category20().range();return function(t,n){return t.color||e[n%e.length]}},e.utils.customTheme=function(e,t,n){t=t||function(e){return e.key},n=n||d3.scale.category20().range();var r=n.length;return function(i,s){var o=t(i);return r||(r=n.length),typeof e[o]!="undefined"?typeof e[o]=="function"?e[o]():e[o]:n[--r]}},e.utils.pjax=function(t,n){function r(r){d3.html(r,function(r){var i=d3.select(n).node();i.parentNode.replaceChild(d3.select(r).select(n).node(),i),e.utils.pjax(t,n)})}d3.selectAll(t).on("click",function(){history.pushState(this.href,this.textContent,this.href),r(this.href),d3.event.preventDefault()}),d3.select(window).on("popstate",function(){d3.event.state&&r(d3.event.state)})},e.utils.calcApproxTextWidth=function(e){if(typeof e.style=="function"&&typeof e.text=="function"){var t=parseInt(e.style("font-size").replace("px","")),n=e.text().length;return n*t*.5}return 0},e.utils.NaNtoZero=function(e){return typeof e!="number"||isNaN(e)||e===null||e===Infinity?0:e},e.utils.optionsFunc=function(e){return e&&d3.map(e).forEach(function(e,t){typeof this[e]=="function"&&this[e](t)}.bind(this)),this},e.models.axis=function(){function m(e){return e.each(function(e){var i=d3.select(this),m=i.selectAll("g.nv-wrap.nv-axis").data([e]),g=m.enter().append("g").attr("class","nvd3 nv-wrap nv-axis"),y=g.append("g"),b=m.select("g");p!==null?t.ticks(p):(t.orient()=="top"||t.orient()=="bottom")&&t.ticks(Math.abs(s.range()[1]-s.range()[0])/100),b.call(t),v=v||t.scale();var w=t.tickFormat();w==null&&(w=v.tickFormat());var E=b.selectAll("text.nv-axislabel").data([o||null]);E.exit().remove();switch(t.orient()){case"top":E.enter().append("text").attr("class","nv-axislabel");var S=s.range().length==2?s.range()[1]:s.range()[s.range().length-1]+(s.range()[1]-s.range()[0]);E.attr("text-anchor","middle").attr("y",0).attr("x",S/2);if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text"),x.exit().remove(),x.attr("transform",function(e,t){return"translate("+s(e)+",0)"}).select("text").attr("dy","-0.5em").attr("y",-t.tickPadding()).attr("text-anchor","middle").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate("+s.range()[t]+",0)"})}break;case"bottom":var T=36,N=30,C=b.selectAll("g").select("text");if(f%360){C.each(function(e,t){var n=this.getBBox().width;n>N&&(N=n)});var k=Math.abs(Math.sin(f*Math.PI/180)),T=(k?k*N:N)+30;C.attr("transform",function(e,t,n){return"rotate("+f+" 0,0)"}).style("text-anchor",f%360>0?"start":"end")}E.enter().append("text").attr("class","nv-axislabel");var S=s.range().length==2?s.range()[1]:s.range()[s.range().length-1]+(s.range()[1]-s.range()[0]);E.attr("text-anchor","middle").attr("y",T).attr("x",S/2);if(u){var x=m.selectAll("g.nv-axisMaxMin").data([s.domain()[0],s.domain()[s.domain().length-1]]);x.enter().append("g").attr("class","nv-axisMaxMin").append("text"),x.exit().remove(),x.attr("transform",function(e,t){return"translate("+(s(e)+(h?s.rangeBand()/2:0))+",0)"}).select("text").attr("dy",".71em").attr("y",t.tickPadding()).attr("transform",function(e,t,n){return"rotate("+f+" 0,0)"}).style("text-anchor",f?f%360>0?"start":"end":"middle").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate("+(s(e)+(h?s.rangeBand()/2:0))+",0)"})}c&&C.attr("transform",function(e,t){return"translate(0,"+(t%2==0?"0":"12")+")"});break;case"right":E.enter().append("text").attr("class","nv-axislabel"),E.style("text-anchor",l?"middle":"begin").attr("transform",l?"rotate(90)":"").attr("y",l?-Math.max(n.right,r)+12:-10).attr("x",l?s.range()[0]/2:t.tickPadding());if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text").style("opacity",0),x.exit().remove(),x.attr("transform",function(e,t){return"translate(0,"+s(e)+")"}).select("text").attr("dy",".32em").attr("y",0).attr("x",t.tickPadding()).style("text-anchor","start").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate(0,"+s.range()[t]+")"}).select("text").style("opacity",1)}break;case"left":E.enter().append("text").attr("class","nv-axislabel"),E.style("text-anchor",l?"middle":"end").attr("transform",l?"rotate(-90)":"").attr("y",l?-Math.max(n.left,r)+d:-10).attr("x",l?-s.range()[0]/2:-t.tickPadding());if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text").style("opacity",0),x.exit().remove(),x.attr("transform",function(e,t){return"translate(0,"+v(e)+")"}).select("text").attr("dy",".32em").attr("y",0).attr("x",-t.tickPadding()).attr("text-anchor","end").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate(0,"+s.range()[t]+")"}).select("text").style("opacity",1)}}E.text(function(e){return e}),u&&(t.orient()==="left"||t.orient()==="right")&&(b.selectAll("g").each(function(e,t){d3.select(this).select("text").attr("opacity",1);if(s(e)s.range()[0]-10)(e>1e-10||e<-1e-10)&&d3.select(this).attr("opacity",0),d3.select(this).select("text").attr("opacity",0)}),s.domain()[0]==s.domain()[1]&&s.domain()[0]==0&&m.selectAll("g.nv-axisMaxMin").style("opacity",function(e,t){return t?0:1}));if(u&&(t.orient()==="top"||t.orient()==="bottom")){var L=[];m.selectAll("g.nv-axisMaxMin").each(function(e,t){try{t?L.push(s(e)-this.getBBox().width-4):L.push(s(e)+this.getBBox().width+4)}catch(n){t?L.push(s(e)-4):L.push(s(e)+4)}}),b.selectAll("g").each(function(e,t){if(s(e)L[1])e>1e-10||e<-1e-10?d3.select(this).remove():d3.select(this).select("text").remove()})}a&&b.selectAll(".tick").filter(function(e){return!parseFloat(Math.round(e.__data__*1e5)/1e6)&&e.__data__!==undefined}).classed("zero",!0),v=s.copy()}),m}var t=d3.svg.axis(),n={top:0,right:0,bottom:0,left:0},r=75,i=60,s=d3.scale.linear(),o=null,u=!0,a=!0,f=0,l=!0,c=!1,h=!1,p=null,d=12;t.scale(s).orient("bottom").tickFormat(function(e){return e});var v;return m.axis=t,d3.rebind(m,t,"orient","tickValues","tickSubdivide","tickSize","tickPadding","tickFormat"),d3.rebind(m,s,"domain","range","rangeBand","rangeBands"),m.options=e.utils.optionsFunc.bind(m),m.margin=function(e){return arguments.length?(n.top=typeof e.top!="undefined"?e.top:n.top,n.right=typeof e.right!="undefined"?e.right:n.right,n.bottom=typeof e.bottom!="undefined"?e.bottom:n.bottom,n.left=typeof e.left!="undefined"?e.left:n.left,m):n},m.width=function(e){return arguments.length?(r=e,m):r},m.ticks=function(e){return arguments.length?(p=e,m):p},m.height=function(e){return arguments.length?(i=e,m):i},m.axisLabel=function(e){return arguments.length?(o=e,m):o},m.showMaxMin=function(e){return arguments.length?(u=e,m):u},m.highlightZero=function(e){return arguments.length?(a=e,m):a},m.scale=function(e){return arguments.length?(s=e,t.scale(s),h=typeof s.rangeBands=="function",d3.rebind(m,s,"domain","range","rangeBand","rangeBands"),m):s},m.rotateYLabel=function(e){return arguments.length?(l=e,m):l},m.rotateLabels=function(e){return arguments.length?(f=e,m):f},m.staggerLabels=function(e){return arguments.length?(c=e,m):c},m.axisLabelDistance=function(e){return arguments.length?(d=e,m):d},m},e.models.historicalBar=function(){function w(E){return E.each(function(w){var E=n-t.left-t.right,S=r-t.top-t.bottom,T=d3.select(this);s.domain(d||d3.extent(w[0].values.map(u).concat(f))),c?s.range(m||[E*.5/w[0].values.length,E*(w[0].values.length-.5)/w[0].values.length]):s.range(m||[0,E]),o.domain(v||d3.extent(w[0].values.map(a).concat(l))).range(g||[S,0]),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]-s.domain()[0]*.01,s.domain()[1]+s.domain()[1]*.01]):s.domain([-1,1])),o.domain()[0]===o.domain()[1]&&(o.domain()[0]?o.domain([o.domain()[0]+o.domain()[0]*.01,o.domain()[1]-o.domain()[1]*.01]):o.domain([-1,1]));var N=T.selectAll("g.nv-wrap.nv-historicalBar-"+i).data([w[0].values]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-historicalBar-"+i),k=C.append("defs"),L=C.append("g"),A=N.select("g");L.append("g").attr("class","nv-bars"),N.attr("transform","translate("+t.left+","+t.top+")"),T.on("click",function(e,t){y.chartClick({data:e,index:t,pos:d3.event,id:i})}),k.append("clipPath").attr("id","nv-chart-clip-path-"+i).append("rect"),N.select("#nv-chart-clip-path-"+i+" rect").attr("width",E).attr("height",S),A.attr("clip-path",h?"url(#nv-chart-clip-path-"+i+")":"");var O=N.select(".nv-bars").selectAll(".nv-bar").data(function(e){return e},function(e,t){return u(e,t)});O.exit().remove();var M=O.enter().append("rect").attr("x",0).attr("y",function(t,n){return e.utils.NaNtoZero(o(Math.max(0,a(t,n))))}).attr("height",function(t,n){return e.utils.NaNtoZero(Math.abs(o(a(t,n))-o(0)))}).attr("transform",function(e,t){return"translate("+(s(u(e,t))-E/w[0].values.length*.45)+",0)"}).on("mouseover",function(e,t){if(!b)return;d3.select(this).classed("hover",!0),y.elementMouseover({point:e,series:w[0],pos:[s(u(e,t)),o(a(e,t))],pointIndex:t,seriesIndex:0,e:d3.event})}).on("mouseout",function(e,t){if(!b)return;d3.select(this).classed("hover",!1),y.elementMouseout({point:e,series:w[0],pointIndex:t,seriesIndex:0,e:d3.event})}).on("click",function(e,t){if(!b)return;y.elementClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()}).on("dblclick",function(e,t){if(!b)return;y.elementDblClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()});O.attr("fill",function(e,t){return p(e,t)}).attr("class",function(e,t,n){return(a(e,t)<0?"nv-bar negative":"nv-bar positive")+" nv-bar-"+n+"-"+t}).attr("transform",function(e,t){return"translate("+(s(u(e,t))-E/w[0].values.length*.45)+",0)"}).attr("width",E/w[0].values.length*.9),O.attr("y",function(t,n){var r=a(t,n)<0?o(0):o(0)-o(a(t,n))<1?o(0)-1:o(a(t,n));return e.utils.NaNtoZero(r)}).attr("height",function(t,n){return e.utils.NaNtoZero(Math.max(Math.abs(o(a(t,n))-o(0)),1))})}),w}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[],l=[0],c=!1,h=!0,p=e.utils.defaultColor(),d,v,m,g,y=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),b=!0;return w.highlightPoint=function(e,t){d3.select(".nv-historicalBar-"+i).select(".nv-bars .nv-bar-0-"+e).classed("hover",t)},w.clearHighlights=function(){d3.select(".nv-historicalBar-"+i).select(".nv-bars .nv-bar.hover").classed("hover",!1)},w.dispatch=y,w.options=e.utils.optionsFunc.bind(w),w.x=function(e){return arguments.length?(u=e,w):u},w.y=function(e){return arguments.length?(a=e,w):a},w.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,w):t},w.width=function(e){return arguments.length?(n=e,w):n},w.height=function(e){return arguments.length?(r=e,w):r},w.xScale=function(e){return arguments.length?(s=e,w):s},w.yScale=function(e){return arguments.length?(o=e,w):o},w.xDomain=function(e){return arguments.length?(d=e,w):d},w.yDomain=function(e){return arguments.length?(v=e,w):v},w.xRange=function(e){return arguments.length?(m=e,w):m},w.yRange=function(e){return arguments.length?(g=e,w):g},w.forceX=function(e){return arguments.length?(f=e,w):f},w.forceY=function(e){return arguments.length?(l=e,w):l},w.padData=function(e){return arguments.length?(c=e,w):c},w.clipEdge=function(e){return arguments.length?(h=e,w):h},w.color=function(t){return arguments.length?(p=e.utils.getColor(t),w):p},w.id=function(e){return arguments.length?(i=e,w):i},w.interactive=function(e){return arguments.length?(b=!1,w):b},w},e.models.bullet=function(){function m(e){return e.each(function(e,n){var p=c-t.left-t.right,m=h-t.top-t.bottom,g=d3.select(this),y=i.call(this,e,n).slice().sort(d3.descending),b=s.call(this,e,n).slice().sort(d3.descending),w=o.call(this,e,n).slice().sort(d3.descending),E=u.call(this,e,n).slice(),S=a.call(this,e,n).slice(),x=f.call(this,e,n).slice(),T=d3.scale.linear().domain(d3.extent(d3.merge([l,y]))).range(r?[p,0]:[0,p]),N=this.__chart__||d3.scale.linear().domain([0,Infinity]).range(T.range());this.__chart__=T;var C=d3.min(y),k=d3.max(y),L=y[1],A=g.selectAll("g.nv-wrap.nv-bullet").data([e]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-bullet"),M=O.append("g"),_=A.select("g");M.append("rect").attr("class","nv-range nv-rangeMax"),M.append("rect").attr("class","nv-range nv-rangeAvg"),M.append("rect").attr("class","nv-range nv-rangeMin"),M.append("rect").attr("class","nv-measure"),M.append("path").attr("class","nv-markerTriangle"),A.attr("transform","translate("+t.left+","+t.top+")");var D=function(e){return Math.abs(N(e)-N(0))},P=function(e){return Math.abs(T(e)-T(0))},H=function(e){return e<0?N(e):N(0)},B=function(e){return e<0?T(e):T(0)};_.select("rect.nv-rangeMax").attr("height",m).attr("width",P(k>0?k:C)).attr("x",B(k>0?k:C)).datum(k>0?k:C),_.select("rect.nv-rangeAvg").attr("height",m).attr("width",P(L)).attr("x",B(L)).datum(L),_.select("rect.nv-rangeMin").attr("height",m).attr("width",P(k)).attr("x",B(k)).attr("width",P(k>0?C:k)).attr("x",B(k>0?C:k)).datum(k>0?C:k),_.select("rect.nv-measure").style("fill",d).attr("height",m/3).attr("y",m/3).attr("width",w<0?T(0)-T(w[0]):T(w[0])-T(0)).attr("x",B(w)).on("mouseover",function(){v.elementMouseover({value:w[0],label:x[0]||"Current",pos:[T(w[0]),m/2]})}).on("mouseout",function(){v.elementMouseout({value:w[0],label:x[0]||"Current"})});var j=m/6;b[0]?_.selectAll("path.nv-markerTriangle").attr("transform",function(e){return"translate("+T(b[0])+","+m/2+")"}).attr("d","M0,"+j+"L"+j+","+ -j+" "+ -j+","+ -j+"Z").on("mouseover",function(){v.elementMouseover({value:b[0],label:S[0]||"Previous",pos:[T(b[0]),m/2]})}).on("mouseout",function(){v.elementMouseout({value:b[0],label:S[0]||"Previous"})}):_.selectAll("path.nv-markerTriangle").remove(),A.selectAll(".nv-range").on("mouseover",function(e,t){var n=E[t]||(t?t==1?"Mean":"Minimum":"Maximum");v.elementMouseover({value:e,label:n,pos:[T(e),m/2]})}).on("mouseout",function(e,t){var n=E[t]||(t?t==1?"Mean":"Minimum":"Maximum");v.elementMouseout({value:e,label:n})})}),m}var t={top:0,right:0,bottom:0,left:0},n="left",r=!1,i=function(e){return e.ranges},s=function(e){return e.markers},o=function(e){return e.measures},u=function(e){return e.rangeLabels?e.rangeLabels:[]},a=function(e){return e.markerLabels?e.markerLabels:[]},f=function(e){return e.measureLabels?e.measureLabels:[]},l=[0],c=380,h=30,p=null,d=e.utils.getColor(["#1f77b4"]),v=d3.dispatch("elementMouseover","elementMouseout");return m.dispatch=v,m.options=e.utils.optionsFunc.bind(m),m.orient=function(e){return arguments.length?(n=e,r=n=="right"||n=="bottom",m):n},m.ranges=function(e){return arguments.length?(i=e,m):i},m.markers=function(e){return arguments.length?(s=e,m):s},m.measures=function(e){return arguments.length?(o=e,m):o},m.forceX=function(e){return arguments.length?(l=e,m):l},m.width=function(e){return arguments.length?(c=e,m):c},m.height=function(e){return arguments.length?(h=e,m):h},m.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,m):t},m.tickFormat=function(e){return arguments.length?(p=e,m):p},m.color=function(t){return arguments.length?(d=e.utils.getColor(t),m):d},m},e.models.bulletChart=function(){function m(e){return e.each(function(n,h){var g=d3.select(this),y=(a||parseInt(g.style("width"))||960)-i.left-i.right,b=f-i.top-i.bottom,w=this;m.update=function(){m(e)},m.container=this;if(!n||!s.call(this,n,h)){var E=g.selectAll(".nv-noData").data([p]);return E.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),E.attr("x",i.left+y/2).attr("y",18+i.top+b/2).text(function(e){return e}),m}g.selectAll(".nv-noData").remove();var S=s.call(this,n,h).slice().sort(d3.descending),x=o.call(this,n,h).slice().sort(d3.descending),T=u.call(this,n,h).slice().sort(d3.descending),N=g.selectAll("g.nv-wrap.nv-bulletChart").data([n]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-bulletChart"),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-bulletWrap"),k.append("g").attr("class","nv-titles"),N.attr("transform","translate("+i.left+","+i.top+")");var A=d3.scale.linear().domain([0,Math.max(S[0],x[0],T[0])]).range(r?[y,0]:[0,y]),O=this.__chart__||d3.scale.linear().domain([0,Infinity]).range(A.range());this.__chart__=A;var M=function(e){return Math.abs(O(e)-O(0))},_=function(e){return Math.abs(A(e)-A(0))},D=k.select(".nv-titles").append("g").attr("text-anchor","end").attr("transform","translate(-6,"+(f-i.top-i.bottom)/2+")");D.append("text").attr("class","nv-title").text(function(e){return e.title}),D.append("text").attr("class","nv-subtitle").attr("dy","1em").text(function(e){return e.subtitle}),t.width(y).height(b);var P=L.select(".nv-bulletWrap");d3.transition(P).call(t);var H=l||A.tickFormat(y/100),B=L.selectAll("g.nv-tick").data(A.ticks(y/50),function(e){return this.textContent||H(e)}),j=B.enter().append("g").attr("class","nv-tick").attr("transform",function(e){return"translate("+O(e)+",0)"}).style("opacity",1e-6);j.append("line").attr("y1",b).attr("y2",b*7/6),j.append("text").attr("text-anchor","middle").attr("dy","1em").attr("y",b*7/6).text(H);var F=d3.transition(B).attr("transform",function(e){return"translate("+A(e)+",0)"}).style("opacity",1);F.select("line").attr("y1",b).attr("y2",b*7/6),F.select("text").attr("y",b*7/6),d3.transition(B.exit()).attr("transform",function(e){return"translate("+A(e)+",0)"}).style("opacity",1e-6).remove(),d.on("tooltipShow",function(e){e.key=n.title,c&&v(e,w.parentNode)})}),d3.timer.flush(),m}var t=e.models.bullet(),n="left",r=!1,i={top:5,right:40,bottom:20,left:120},s=function(e){return e.ranges},o=function(e){return e.markers},u=function(e){return e.measures},a=null,f=55,l=null,c=!0,h=function(e,t,n,r,i){return"

    "+t+"

    "+"

    "+n+"

    "},p="No Data Available.",d=d3.dispatch("tooltipShow","tooltipHide"),v=function(t,n){var r=t.pos[0]+(n.offsetLeft||0)+i.left,s=t.pos[1]+(n.offsetTop||0)+i.top,o=h(t.key,t.label,t.value,t,m);e.tooltip.show([r,s],o,t.value<0?"e":"w",null,n)};return t.dispatch.on("elementMouseover.tooltip",function(e){d.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){d.tooltipHide(e)}),d.on("tooltipHide",function(){c&&e.tooltip.cleanup()}),m.dispatch=d,m.bullet=t,d3.rebind(m,t,"color"),m.options=e.utils.optionsFunc.bind(m),m.orient=function(e){return arguments.length?(n=e,r=n=="right"||n=="bottom",m):n},m.ranges=function(e){return arguments.length?(s=e,m):s},m.markers=function(e){return arguments.length?(o=e,m):o},m.measures=function(e){return arguments.length?(u=e,m):u},m.width=function(e){return arguments.length?(a=e,m):a},m.height=function(e){return arguments.length?(f=e,m):f},m.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.right=typeof e.right!="undefined"?e.right:i.right,i.bottom=typeof e.bottom!="undefined"?e.bottom:i.bottom,i.left=typeof e.left!="undefined"?e.left:i.left,m):i},m.tickFormat=function(e){return arguments.length?(l=e,m):l},m.tooltips=function(e){return arguments.length?(c=e,m):c},m.tooltipContent=function(e){return arguments.length?(h=e,m):h},m.noData=function(e){return arguments.length?(p=e,m):p},m},e.models.cumulativeLineChart=function(){function D(b){return b.each(function(b){function I(e,t){d3.select(D.container).style("cursor","ew-resize")}function q(e,t){M.x=d3.event.x,M.i=Math.round(O.invert(M.x)),nt()}function R(e,t){d3.select(D.container).style("cursor","auto"),x.index=M.i,k.stateChange(x)}function nt(){tt.data([M]);var e=D.transitionDuration();D.transitionDuration(0),D.update(),D.transitionDuration(e)}var L=d3.select(this).classed("nv-chart-"+S,!0),A=this,H=(f||parseInt(L.style("width"))||960)-u.left-u.right,B=(l||parseInt(L.style("height"))||400)-u.top-u.bottom;D.update=function(){L.call(D)},D.container=this,x.disabled=b.map(function(e){return!!e.disabled});if(!T){var j;T={};for(j in x)x[j]instanceof Array?T[j]=x[j].slice(0):T[j]=x[j]}var F=d3.behavior.drag().on("dragstart",I).on("drag",q).on("dragend",R);if(!b||!b.length||!b.filter(function(e){return e.values.length}).length){var U=L.selectAll(".nv-noData").data([N]);return U.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),U.attr("x",u.left+H/2).attr("y",u.top+B/2).text(function(e){return e}),D}L.selectAll(".nv-noData").remove(),w=t.xScale(),E=t.yScale();if(!y){var z=b.filter(function(e){return!e.disabled}).map(function(e,n){var r=d3.extent(e.values,t.y());return r[0]<-0.95&&(r[0]=-0.95),[(r[0]-r[1])/(1+r[1]),(r[1]-r[0])/(1+r[0])]}),W=[d3.min(z,function(e){return e[0]}),d3.max(z,function(e){return e[1]})];t.yDomain(W)}else t.yDomain(null);O.domain([0,b[0].values.length-1]).range([0,H]).clamp(!0);var b=P(M.i,b),X=g?"none":"all",V=L.selectAll("g.nv-wrap.nv-cumulativeLine").data([b]),$=V.enter().append("g").attr("class","nvd3 nv-wrap nv-cumulativeLine").append("g"),J=V.select("g");$.append("g").attr("class","nv-interactive"),$.append("g").attr("class","nv-x nv-axis").style("pointer-events","none"),$.append("g").attr("class","nv-y nv-axis"),$.append("g").attr("class","nv-background"),$.append("g").attr("class","nv-linesWrap").style("pointer-events",X),$.append("g").attr("class","nv-avgLinesWrap").style("pointer-events","none"),$.append("g").attr("class","nv-legendWrap"),$.append("g").attr("class","nv-controlsWrap"),c&&(i.width(H),J.select(".nv-legendWrap").datum(b).call(i),u.top!=i.height()&&(u.top=i.height(),B=(l||parseInt(L.style("height"))||400)-u.top-u.bottom),J.select(".nv-legendWrap").attr("transform","translate(0,"+ -u.top+")"));if(m){var K=[{key:"Re-scale y-axis",disabled:!y}];s.width(140).color(["#444","#444","#444"]).rightAlign(!1).margin({top:5,right:0,bottom:5,left:20}),J.select(".nv-controlsWrap").datum(K).attr("transform","translate(0,"+ -u.top+")").call(s)}V.attr("transform","translate("+u.left+","+u.top+")"),d&&J.select(".nv-y.nv-axis").attr("transform","translate("+H+",0)");var Q=b.filter(function(e){return e.tempDisabled});V.select(".tempDisabled").remove(),Q.length&&V.append("text").attr("class","tempDisabled").attr("x",H/2).attr("y","-.71em").style("text-anchor","end").text(Q.map(function(e){return e.key}).join(", ")+" values cannot be calculated for this time period."),g&&(o.width(H).height(B).margin({left:u.left,top:u.top}).svgContainer(L).xScale(w),V.select(".nv-interactive").call(o)),$.select(".nv-background").append("rect"),J.select(".nv-background rect").attr("width",H).attr("height",B),t.y(function(e){return e.display.y}).width(H).height(B).color(b.map(function(e,t){return e.color||a(e,t)}).filter(function(e,t){return!b[t].disabled&&!b[t].tempDisabled}));var G=J.select(".nv-linesWrap").datum(b.filter(function(e){return!e.disabled&&!e.tempDisabled}));G.call(t),b.forEach(function(e,t){e.seriesIndex=t});var Y=b.filter(function(e){return!e.disabled&&!!C(e)}),Z=J.select(".nv-avgLinesWrap").selectAll("line").data(Y,function(e){return e.key}),et=function(e){var t=E(C(e));return t<0?0:t>B?B:t};Z.enter().append("line").style("stroke-width",2).style("stroke-dasharray","10,10").style("stroke",function(e,n){return t.color()(e,e.seriesIndex)}).attr("x1",0).attr("x2",H).attr("y1",et).attr("y2",et),Z.style("stroke-opacity",function(e){var t=E(C(e));return t<0||t>B?0:1}).attr("x1",0).attr("x2",H).attr("y1",et).attr("y2",et),Z.exit().remove();var tt=G.selectAll(".nv-indexLine").data([M]);tt.enter().append("rect").attr("class","nv-indexLine").attr("width",3).attr("x",-2).attr("fill","red").attr("fill-opacity",.5).style("pointer-events","all").call(F),tt.attr("transform",function(e){return"translate("+O(e.i)+",0)"}).attr("height",B),h&&(n.scale(w).ticks(Math.min(b[0].values.length,H/70)).tickSize(-B,0),J.select(".nv-x.nv-axis").attr("transform","translate(0,"+E.range()[0]+")"),d3.transition(J.select(".nv-x.nv-axis")).call(n)),p&&(r.scale(E).ticks(B/36).tickSize(-H,0),d3.transition(J.select(".nv-y.nv-axis")).call(r)),J.select(".nv-background rect").on("click",function(){M.x=d3.mouse(this)[0],M.i=Math.round(O.invert(M.x)),x.index=M.i,k.stateChange(x),nt()}),t.dispatch.on("elementClick",function(e){M.i=e.pointIndex,M.x=O(M.i),x.index=M.i,k.stateChange(x),nt()}),s.dispatch.on("legendClick",function(e,t){e.disabled=!e.disabled,y=!e.disabled,x.rescaleY=y,k.stateChange(x),D.update()}),i.dispatch.on("stateChange",function(e){x.disabled=e.disabled,k.stateChange(x),D.update()}),o.dispatch.on("elementMousemove",function(i){t.clearHighlights();var s,f,l,c=[];b.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){f=e.interactiveBisect(n.values,i.pointXValue,D.x()),t.highlightPoint(r,f,!0);var o=n.values[f];if(typeof o=="undefined")return;typeof s=="undefined"&&(s=o),typeof l=="undefined"&&(l=D.xScale()(D.x()(o,f))),c.push({key:n.key,value:D.y()(o,f),color:a(n,n.seriesIndex)})});if(c.length>2){var h=D.yScale().invert(i.mouseY),p=Math.abs(D.yScale().domain()[0]-D.yScale().domain()[1]),d=.03*p,m=e.nearestValueIndex(c.map(function(e){return e.value}),h,d);m!==null&&(c[m].highlight=!0)}var g=n.tickFormat()(D.x()(s,f),f);o.tooltip.position({left:l+u.left,top:i.mouseY+u.top}).chartContainer(A.parentNode).enabled(v).valueFormatter(function(e,t){return r.tickFormat()(e)}).data({value:g,series:c})(),o.renderGuideLine(l)}),o.dispatch.on("elementMouseout",function(e){k.tooltipHide(),t.clearHighlights()}),k.on("tooltipShow",function(e){v&&_(e,A.parentNode)}),k.on("changeState",function(e){typeof e.disabled!="undefined"&&(b.forEach(function(t,n){t.disabled=e.disabled[n]}),x.disabled=e.disabled),typeof e.index!="undefined"&&(M.i=e.index,M.x=O(M.i),x.index=e.index,tt.data([M])),typeof e.rescaleY!="undefined"&&(y=e.rescaleY),D.update()})}),D}function P(e,n){return n.map(function(n,r){if(!n.values)return n;var i=n.values[e];if(i==null)return n;var s=t.y()(i,e);return s<-0.95&&!A?(n.tempDisabled=!0,n):(n.tempDisabled=!1,n.values=n.values.map(function(e,n){return e.display={y:(t.y()(e,n)-s)/(1+s)},e}),n)})}var t=e.models.line(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.interactiveGuideline(),u={top:30,right:30,bottom:50,left:60},a=e.utils.defaultColor(),f=null,l=null,c=!0,h=!0,p=!0,d=!1,v=!0,m=!0,g=!1,y=!0,b=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},w,E,S=t.id(),x={index:0,rescaleY:y},T=null,N="No Data Available.",C=function(e){return e.average},k=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),L=0,A=!1;n.orient("bottom").tickPadding(7),r.orient(d?"right":"left"),s.updateState(!1);var O=d3.scale.linear(),M={i:0,x:0},_=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=b(i.series.key,a,f,i,D);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],k.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){k.tooltipHide(e)}),k.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),D.dispatch=k,D.lines=t,D.legend=i,D.xAxis=n,D.yAxis=r,D.interactiveLayer=o,d3.rebind(D,t,"defined","isArea","x","y","xScale","yScale","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","useVoronoi","id"),D.options=e.utils.optionsFunc.bind(D),D.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,D):u},D.width=function(e){return arguments.length?(f=e,D):f},D.height=function(e){return arguments.length?(l=e,D):l},D.color=function(t){return arguments.length?(a=e.utils.getColor(t),i.color(a),D):a},D.rescaleY=function(e){return arguments.length?(y=e,D):y},D.showControls=function(e){return arguments.length?(m=e,D):m},D.useInteractiveGuideline=function(e){return arguments.length?(g=e,e===!0&&(D.interactive(!1),D.useVoronoi(!1)),D):g},D.showLegend=function(e){return arguments.length?(c=e,D):c},D.showXAxis=function(e){return arguments.length?(h=e,D):h},D.showYAxis=function(e){return arguments.length?(p=e,D):p},D.rightAlignYAxis=function(e){return arguments.length?(d=e,r.orient(e?"right":"left"),D):d},D.tooltips=function(e){return arguments.length?(v=e,D):v},D.tooltipContent=function(e){return arguments.length?(b=e,D):b},D.state=function(e){return arguments.length?(x=e,D):x},D.defaultState=function(e){return arguments.length?(T=e,D):T},D.noData=function(e){return arguments.length?(N=e,D):N},D.average=function(e){return arguments.length?(C=e,D):C},D.transitionDuration=function(e){return arguments.length?(L=e,D):L},D.noErrorCheck=function(e){return arguments.length?(A=e,D):A},D},e.models.discreteBar=function(){function E(e){return e.each(function(e){var i=n-t.left-t.right,E=r-t.top-t.bottom,S=d3.select(this);e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})});var T=p&&d?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0}})});s.domain(p||d3.merge(T).map(function(e){return e.x})).rangeBands(v||[0,i],.1),o.domain(d||d3.extent(d3.merge(T).map(function(e){return e.y}).concat(f))),c?o.range(m||[E-(o.domain()[0]<0?12:0),o.domain()[1]>0?12:0]):o.range(m||[E,0]),b=b||s,w=w||o.copy().range([o(0),o(0)]);var N=S.selectAll("g.nv-wrap.nv-discretebar").data([e]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-discretebar"),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-groups"),N.attr("transform","translate("+t.left+","+t.top+")");var A=N.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});A.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),A.exit().style("stroke-opacity",1e-6).style("fill-opacity",1e-6).remove(),A.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}),A.style("stroke-opacity",1).style("fill-opacity",.75);var O=A.selectAll("g.nv-bar").data(function(e){return e.values});O.exit().remove();var M=O.enter().append("g").attr("transform",function(e,t,n){return"translate("+(s(u(e,t))+s.rangeBand()*.05)+", "+o(0)+")"}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),g.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),g.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){g.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){g.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()});M.append("rect").attr("height",0).attr("width",s.rangeBand()*.9/e.length),c?(M.append("text").attr("text-anchor","middle"),O.select("text").text(function(e,t){return h(a(e,t))}).attr("x",s.rangeBand()*.9/2).attr("y",function(e,t){return a(e,t)<0?o(a(e,t))-o(0)+12:-4})):O.selectAll("text").remove(),O.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).style("fill",function(e,t){return e.color||l(e,t)}).style("stroke",function(e,t){return e.color||l(e,t)}).select("rect").attr("class",y).attr("width",s.rangeBand()*.9/e.length),O.attr("transform",function(e,t){var n=s(u(e,t))+s.rangeBand()*.05,r=a(e,t)<0?o(0):o(0)-o(a(e,t))<1?o(0)-1:o(a(e,t));return"translate("+n+", "+r+")"}).select("rect").attr("height",function(e,t){return Math.max(Math.abs(o(a(e,t))-o(d&&d[0]||0))||1)}),b=s.copy(),w=o.copy()}),E}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.ordinal(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=e.utils.defaultColor(),c=!1,h=d3.format(",.2f"),p,d,v,m,g=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),y="discreteBar",b,w;return E.dispatch=g,E.options=e.utils.optionsFunc.bind(E),E.x=function(e){return arguments.length?(u=e,E):u},E.y=function(e){return arguments.length?(a=e,E):a},E.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,E):t},E.width=function(e){return arguments.length?(n=e,E):n},E.height=function(e){return arguments.length?(r=e,E):r},E.xScale=function(e){return arguments.length?(s=e,E):s},E.yScale=function(e){return arguments.length?(o=e,E):o},E.xDomain=function(e){return arguments.length?(p=e,E):p},E.yDomain=function(e){return arguments.length?(d=e,E):d},E.xRange=function(e){return arguments.length?(v=e,E):v},E.yRange=function(e){return arguments.length?(m=e,E):m},E.forceY=function(e){return arguments.length?(f=e,E):f},E.color=function(t){return arguments.length?(l=e.utils.getColor(t),E):l},E.id=function(e){return arguments.length?(i=e,E):i},E.showValues=function(e){return arguments.length?(c=e,E):c},E.valueFormat=function(e){return arguments.length?(h=e,E):h},E.rectClass=function(e){return arguments.length?(y=e,E):y},E},e.models.discreteBarChart=function(){function w(e){return e.each(function(e){var u=d3.select(this),p=this,y=(s||parseInt(u.style("width"))||960)-i.left-i.right,E=(o||parseInt(u.style("height"))||400)-i.top-i.bottom;w.update=function(){g.beforeUpdate(),u.call(w)},w.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var S=u.selectAll(".nv-noData").data([m]);return S.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),S.attr("x",i.left+y/2).attr("y",i.top+E/2).text(function(e){return e}),w}u.selectAll(".nv-noData").remove(),d=t.xScale(),v=t.yScale().clamp(!0);var T=u.selectAll("g.nv-wrap.nv-discreteBarWithAxes").data([e]),N=T.enter().append("g").attr("class","nvd3 nv-wrap nv-discreteBarWithAxes").append("g"),C=N.append("defs"),k=T.select("g");N.append("g").attr("class","nv-x nv-axis"),N.append("g").attr("class","nv-y nv-axis").append("g").attr("class","nv-zeroLine").append("line"),N.append("g").attr("class","nv-barsWrap"),k.attr("transform","translate("+i.left+","+i.top+")"),l&&k.select(".nv-y.nv-axis").attr("transform","translate("+y+",0)"),t.width(y).height(E);var L=k.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));L.call(t),C.append("clipPath").attr("id","nv-x-label-clip-"+t.id()).append("rect"),k.select("#nv-x-label-clip-"+t.id()+" rect").attr("width",d.rangeBand()*(c?2:1)).attr("height",16).attr("x",-d.rangeBand()/(c?1:2));if(a){n.scale(d).ticks(y/100).tickSize(-E,0),k.select(".nv-x.nv-axis").attr("transform","translate(0,"+(v.range()[0]+(t.showValues()&&v.domain()[0]<0?16:0))+")"),k.select(".nv-x.nv-axis").call(n);var A=k.select(".nv-x.nv-axis").selectAll("g");c&&A.selectAll("text").attr("transform",function(e,t,n){return"translate(0,"+(n%2==0?"5":"17")+")"})}f&&(r.scale(v).ticks(E/36).tickSize(-y,0),k.select(".nv-y.nv-axis").call(r)),k.select(".nv-zeroLine line").attr("x1",0).attr("x2",y).attr("y1",v(0)).attr("y2",v(0)),g.on("tooltipShow",function(e){h&&b(e,p.parentNode)})}),w}var t=e.models.discreteBar(),n=e.models.axis(),r=e.models.axis(),i={top:15,right:10,bottom:50,left:60},s=null,o=null,u=e.utils.getColor(),a=!0,f=!0,l=!1,c=!1,h=!0,p=function(e,t,n,r,i){return"

    "+t+"

    "+"

    "+n+"

    "},d,v,m="No Data Available.",g=d3.dispatch("tooltipShow","tooltipHide","beforeUpdate"),y=0;n.orient("bottom").highlightZero(!1).showMaxMin(!1).tickFormat(function(e){return e}),r.orient(l?"right":"left").tickFormat(d3.format(",.1f"));var b=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=p(i.series.key,a,f,i,w);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+i.left,e.pos[1]+i.top],g.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){g.tooltipHide(e)}),g.on("tooltipHide",function(){h&&e.tooltip.cleanup()}),w.dispatch=g,w.discretebar=t,w.xAxis=n,w.yAxis=r,d3.rebind(w,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","id","showValues","valueFormat"),w.options=e.utils.optionsFunc.bind(w),w.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.right=typeof e.right!="undefined"?e.right:i.right,i.bottom=typeof e.bottom!="undefined"?e.bottom:i.bottom,i.left=typeof e.left!="undefined"?e.left:i.left,w):i},w.width=function(e){return arguments.length?(s=e,w):s},w.height=function(e){return arguments.length?(o=e,w):o},w.color=function(n){return arguments.length?(u=e.utils.getColor(n),t.color(u),w):u},w.showXAxis=function(e){return arguments.length?(a=e,w):a},w.showYAxis=function(e){return arguments.length?(f=e,w):f},w.rightAlignYAxis=function(e){return arguments.length?(l=e,r.orient(e?"right":"left"),w):l},w.staggerLabels=function(e){return arguments.length?(c=e,w):c},w.tooltips=function(e){return arguments.length?(h=e,w):h},w.tooltipContent=function(e){return arguments.length?(p=e,w):p},w.noData=function(e){return arguments.length?(m=e,w):m},w.transitionDuration=function(e){return arguments.length?(y=e,w):y},w},e.models.distribution=function(){function l(e){return e.each(function(e){var a=n-(i==="x"?t.left+t.right:t.top+t.bottom),l=i=="x"?"y":"x",c=d3.select(this);f=f||u;var h=c.selectAll("g.nv-distribution").data([e]),p=h.enter().append("g").attr("class","nvd3 nv-distribution"),d=p.append("g"),v=h.select("g");h.attr("transform","translate("+t.left+","+t.top+")");var m=v.selectAll("g.nv-dist").data(function(e){return e},function(e){return e.key});m.enter().append("g"),m.attr("class",function(e,t){return"nv-dist nv-series-"+t}).style("stroke",function(e,t){return o(e,t)});var g=m.selectAll("line.nv-dist"+i).data(function(e){return e.values});g.enter().append("line").attr(i+"1",function(e,t){return f(s(e,t))}).attr(i+"2",function(e,t){return f(s(e,t))}),m.exit().selectAll("line.nv-dist"+i).attr(i+"1",function(e,t){return u(s(e,t))}).attr(i+"2",function(e,t){return u(s(e,t))}).style("stroke-opacity",0).remove(),g.attr("class",function(e,t){return"nv-dist"+i+" nv-dist"+i+"-"+t}).attr(l+"1",0).attr(l+"2",r),g.attr(i+"1",function(e,t){return u(s(e,t))}).attr(i+"2",function(e,t){return u(s(e,t))}),f=u.copy()}),l}var t={top:0,right:0,bottom:0,left:0},n=400,r=8,i="x",s=function(e){return e[i]},o=e.utils.defaultColor(),u=d3.scale.linear(),a,f;return l.options=e.utils.optionsFunc.bind(l),l.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,l):t},l.width=function(e){return arguments.length?(n=e,l):n},l.axis=function(e){return arguments.length?(i=e,l):i},l.size=function(e){return arguments.length?(r=e,l):r},l.getData=function(e){return arguments.length?(s=d3.functor(e),l):s},l.scale=function(e){return arguments.length?(u=e,l):u},l.color=function(t){return arguments.length?(o=e.utils.getColor(t),l):o},l},e.models.historicalBarChart=function(){function x(e){return e.each(function(d){var E=d3.select(this),T=this,N=(u||parseInt(E.style("width"))||960)-s.left-s.right,C=(a||parseInt(E.style("height"))||400)-s.top-s.bottom;x.update=function(){E.call(x)},x.container=this,g.disabled=d.map(function(e){return!!e.disabled});if(!y){var k;y={};for(k in g)g[k]instanceof Array?y[k]=g[k].slice(0):y[k]=g[k]}if(!d||!d.length||!d.filter(function(e){return e.values.length}).length){var L=E.selectAll(".nv-noData").data([b]);return L.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),L.attr("x",s.left+N/2).attr("y",s.top+C/2).text(function(e){return e}),x}E.selectAll(".nv-noData").remove(),v=t.xScale(),m=t.yScale();var A=E.selectAll("g.nv-wrap.nv-historicalBarChart").data([d]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-historicalBarChart").append("g"),M=A.select("g");O.append("g").attr("class","nv-x nv-axis"),O.append("g").attr("class","nv-y nv-axis"),O.append("g").attr("class","nv-barsWrap"),O.append("g").attr("class","nv-legendWrap"),f&&(i.width(N),M.select(".nv-legendWrap").datum(d).call(i),s.top!=i.height()&&(s.top=i.height(),C=(a||parseInt(E.style("height"))||400)-s.top-s.bottom),A.select(".nv-legendWrap").attr("transform","translate(0,"+ -s.top+")")),A.attr("transform","translate("+s.left+","+s.top+")"),h&&M.select(".nv-y.nv-axis").attr("transform","translate("+N+",0)"),t.width(N).height(C).color(d.map(function(e,t){return e.color||o(e,t)}).filter(function(e,t){return!d[t].disabled}));var _=M.select(".nv-barsWrap").datum(d.filter(function(e){return!e.disabled}));_.call(t),l&&(n.scale(v).tickSize(-C,0),M.select(".nv-x.nv-axis").attr("transform","translate(0,"+m.range()[0]+")"),M.select(".nv-x.nv-axis").call(n)),c&&(r.scale(m).ticks(C/36).tickSize(-N,0),M.select(".nv-y.nv-axis").call(r)),i.dispatch.on("legendClick",function(t,n){t.disabled=!t.disabled,d.filter(function(e){return!e.disabled}).length||d.map(function(e){return e.disabled=!1,A.selectAll(".nv-series").classed("disabled",!1),e}),g.disabled=d.map(function(e){return!!e.disabled}),w.stateChange(g),e.call(x)}),i.dispatch.on("legendDblclick",function(e){d.forEach(function(e){e.disabled=!0}),e.disabled=!1,g.disabled=d.map(function(e){return!!e.disabled}),w.stateChange(g),x.update()}),w.on("tooltipShow",function(e){p&&S(e,T.parentNode)}),w.on("changeState",function(e){typeof e.disabled!="undefined"&&(d.forEach(function(t,n){t.disabled=e.disabled[n]}),g.disabled=e.disabled),x.update()})}),x}var t=e.models.historicalBar(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s={top:30,right:90,bottom:50,left:90},o=e.utils.defaultColor(),u=null,a=null,f=!1,l=!0,c=!0,h=!1,p=!0,d=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},v,m,g={},y=null,b="No Data Available.",w=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),E=0;n.orient("bottom").tickPadding(7),r.orient(h?"right":"left");var S=function(i,s){if(s){var o=d3.select(s).select("svg"),u=o.node()?o.attr("viewBox"):null;if(u){u=u.split(" ");var a=parseInt(o.style("width"))/u[2];i.pos[0]=i.pos[0]*a,i.pos[1]=i.pos[1]*a}}var f=i.pos[0]+(s.offsetLeft||0),l=i.pos[1]+(s.offsetTop||0),c=n.tickFormat()(t.x()(i.point,i.pointIndex)),h=r.tickFormat()(t.y()(i.point,i.pointIndex)),p=d(i.series.key,c,h,i,x);e.tooltip.show([f,l],p,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+s.left,e.pos[1]+s.top],w.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){w.tooltipHide(e)}),w.on("tooltipHide",function(){p&&e.tooltip.cleanup()}),x.dispatch=w,x.bars=t,x.legend=i,x.xAxis=n,x.yAxis=r,d3.rebind(x,t,"defined","isArea","x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id","interpolate","highlightPoint","clearHighlights","interactive"),x.options=e.utils.optionsFunc.bind(x),x.margin=function(e){return arguments.length?(s.top=typeof e.top!="undefined"?e.top:s.top,s.right=typeof e.right!="undefined"?e.right:s.right,s.bottom=typeof e.bottom!="undefined"?e.bottom:s.bottom,s.left=typeof e.left!="undefined"?e.left:s.left,x):s},x.width=function(e){return arguments.length?(u=e,x):u},x.height=function(e){return arguments.length?(a=e,x):a},x.color=function(t){return arguments.length?(o=e.utils.getColor(t),i.color(o),x):o},x.showLegend=function(e){return arguments.length?(f=e,x):f},x.showXAxis=function(e){return arguments.length?(l=e,x):l},x.showYAxis=function(e){return arguments.length?(c=e,x):c},x.rightAlignYAxis=function(e){return arguments.length?(h=e,r.orient(e?"right":"left"),x):h},x.tooltips=function(e){return arguments.length?(p=e,x):p},x.tooltipContent=function(e){return arguments.length?(d=e,x):d},x.state=function(e){return arguments.length?(g=e,x):g},x.defaultState=function(e){return arguments.length?(y=e,x):y},x.noData=function(e){return arguments.length?(b=e,x):b},x.transitionDuration=function(e){return arguments.length?(E=e,x):E},x},e.models.indentedTree=function(){function g(e){return e.each(function(e){function k(e,t,n){d3.event.stopPropagation();if(d3.event.shiftKey&&!n)return d3.event.shiftKey=!1,e.values&&e.values.forEach(function(e){(e.values||e._values)&&k(e,0,!0)}),!0;if(!O(e))return!0;e.values?(e._values=e.values,e.values=null):(e.values=e._values,e._values=null),g.update()}function L(e){return e._values&&e._values.length?h:e.values&&e.values.length?p:""}function A(e){return e._values&&e._values.length}function O(e){var t=e.values||e._values;return t&&t.length}var t=1,n=d3.select(this),i=d3.layout.tree().children(function(e){return e.values}).size([r,f]);g.update=function(){n.call(g)},e[0]||(e[0]={key:a});var s=i.nodes(e[0]),y=d3.select(this).selectAll("div").data([[s]]),b=y.enter().append("div").attr("class","nvd3 nv-wrap nv-indentedtree"),w=b.append("table"),E=y.select("table").attr("width","100%").attr("class",c);if(o){var S=w.append("thead"),x=S.append("tr");l.forEach(function(e){x.append("th").attr("width",e.width?e.width:"10%").style("text-align",e.type=="numeric"?"right":"left").append("span").text(e.label)})}var T=E.selectAll("tbody").data(function(e){return e});T.enter().append("tbody"),t=d3.max(s,function(e){return e.depth}),i.size([r,t*f]);var N=T.selectAll("tr").data(function(e){return e.filter(function(e){return u&&!e.children?u(e):!0})},function(e,t){return e.id||e.id||++m});N.exit().remove(),N.select("img.nv-treeicon").attr("src",L).classed("folded",A);var C=N.enter().append("tr");l.forEach(function(e,t){var n=C.append("td").style("padding-left",function(e){return(t?0:e.depth*f+12+(L(e)?0:16))+"px"},"important").style("text-align",e.type=="numeric"?"right":"left");t==0&&n.append("img").classed("nv-treeicon",!0).classed("nv-folded",A).attr("src",L).style("width","14px").style("height","14px").style("padding","0 1px").style("display",function(e){return L(e)?"inline-block":"none"}).on("click",k),n.each(function(n){!t&&v(n)?d3.select(this).append("a").attr("href",v).attr("class",d3.functor(e.classes)).append("span"):d3.select(this).append("span"),d3.select(this).select("span").attr("class",d3.functor(e.classes)).text(function(t){return e.format?t[e.key]?e.format(t[e.key]):"-":t[e.key]||"-"})}),e.showCount&&(n.append("span").attr("class","nv-childrenCount"),N.selectAll("span.nv-childrenCount").text(function(e){return e.values&&e.values.length||e._values&&e._values.length?"("+(e.values&&e.values.filter(function(e){return u?u(e):!0}).length||e._values&&e._values.filter(function(e){return u?u(e):!0}).length||0)+")":""}))}),N.order().on("click",function(e){d.elementClick({row:this,data:e,pos:[e.x,e.y]})}).on("dblclick",function(e){d.elementDblclick({row:this,data:e,pos:[e.x,e.y]})}).on("mouseover",function(e){d.elementMouseover({row:this,data:e,pos:[e.x,e.y]})}).on("mouseout",function(e){d.elementMouseout({row:this,data:e,pos:[e.x,e.y]})})}),g}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=e.utils.defaultColor(),s=Math.floor(Math.random()*1e4),o=!0,u=!1,a="No Data Available.",f=20,l=[{key:"key",label:"Name",type:"text"}],c=null,h="images/grey-plus.png",p="images/grey-minus.png",d=d3.dispatch("elementClick","elementDblclick","elementMouseover","elementMouseout"),v=function(e){return e.url},m=0;return g.options=e.utils.optionsFunc.bind(g),g.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,g):t},g.width=function(e){return arguments.length?(n=e,g):n},g.height=function(e){return arguments.length?(r=e,g):r},g.color=function(t){return arguments.length?(i=e.utils.getColor(t),scatter.color(i),g):i},g.id=function(e){return arguments.length?(s=e,g):s},g.header=function(e){return arguments.length?(o=e,g):o},g.noData=function(e){return arguments.length?(a=e,g):a},g.filterZero=function(e){return arguments.length?(u=e,g):u},g.columns=function(e){return arguments.length?(l=e,g):l},g.tableClass=function(e){return arguments.length?(c=e,g):c},g.iconOpen=function(e){return arguments.length?(h=e,g):h},g.iconClose=function(e){return arguments.length?(p=e,g):p},g.getUrl=function(e){return arguments.length?(v=e,g):v},g},e.models.legend=function(){function c(h){return h.each(function(c){var h=n-t.left-t.right,p=d3.select(this),d=p.selectAll("g.nv-legend").data([c]),v=d.enter().append("g").attr("class","nvd3 nv-legend").append("g"),m=d.select("g");d.attr("transform","translate("+t.left+","+t.top+")");var g=m.selectAll(".nv-series").data(function(e){return e}),y=g.enter().append("g").attr("class","nv-series").on("mouseover",function(e,t){l.legendMouseover(e,t)}).on("mouseout",function(e,t){l.legendMouseout(e,t)}).on("click",function(e,t){l.legendClick(e,t),a&&(f?(c.forEach(function(e){e.disabled=!0}),e.disabled=!1):(e.disabled=!e.disabled,c.every(function(e){return e.disabled})&&c.forEach(function(e){e.disabled=!1})),l.stateChange({disabled:c.map(function(e){return!!e.disabled})}))}).on("dblclick",function(e,t){l.legendDblclick(e,t),a&&(c.forEach(function(e){e.disabled=!0}),e.disabled=!1,l.stateChange({disabled:c.map(function(e){return!!e.disabled})}))});y.append("circle").style("stroke-width",2).attr("class","nv-legend-symbol").attr("r",5),y.append("text").attr("text-anchor","start").attr("class","nv-legend-text").attr("dy",".32em").attr("dx","8"),g.classed("disabled",function(e){return e.disabled}),g.exit().remove(),g.select("circle").style("fill",function(e,t){return e.color||s(e,t)}).style("stroke",function(e,t){return e.color||s(e,t)}),g.select("text").text(i);if(o){var b=[];g.each(function(t,n){var r=d3.select(this).select("text"),i;try{i=r.getComputedTextLength();if(i<=0)throw Error()}catch(s){i=e.utils.calcApproxTextWidth(r)}b.push(i+28)});var w=0,E=0,S=[];while(Eh&&w>1){S=[],w--;for(var x=0;x(S[x%w]||0)&&(S[x%w]=b[x]);E=S.reduce(function(e,t,n,r){return e+t})}var T=[];for(var N=0,C=0;NA&&(A=L),"translate("+O+","+k+")"}),m.attr("transform","translate("+(n-t.right-A)+","+t.top+")"),r=t.top+t.bottom+k+15}}),c}var t={top:5,right:0,bottom:5,left:0},n=400,r=20,i=function(e){return e.key},s=e.utils.defaultColor(),o=!0,u=!0,a=!0,f=!1,l=d3.dispatch("legendClick","legendDblclick","legendMouseover","legendMouseout","stateChange");return c.dispatch=l,c.options=e.utils.optionsFunc.bind(c),c.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,c):t},c.width=function(e){return arguments.length?(n=e,c):n},c.height=function(e){return arguments.length?(r=e,c):r},c.key=function(e){return arguments.length?(i=e,c):i},c.color=function(t){return arguments.length?(s=e.utils.getColor(t),c):s},c.align=function(e){return arguments.length?(o=e,c):o},c.rightAlign=function(e){return arguments.length?(u=e,c):u},c.updateState=function(e){return arguments.length?(a=e,c):a},c.radioButtonMode=function(e){return arguments.length?(f=e,c):f},c},e.models.line=function(){function m(g){return g.each(function(m){var g=r-n.left-n.right,b=i-n.top-n.bottom,w=d3.select(this);c=t.xScale(),h=t.yScale(),d=d||c,v=v||h;var E=w.selectAll("g.nv-wrap.nv-line").data([m]),S=E.enter().append("g").attr("class","nvd3 nv-wrap nv-line"),T=S.append("defs"),N=S.append("g"),C=E.select("g");N.append("g").attr("class","nv-groups"),N.append("g").attr("class","nv-scatterWrap"),E.attr("transform","translate("+n.left+","+n.top+")"),t.width(g).height(b);var k=E.select(".nv-scatterWrap");k.call(t),T.append("clipPath").attr("id","nv-edge-clip-"+t.id()).append("rect"),E.select("#nv-edge-clip-"+t.id()+" rect").attr("width",g).attr("height",b>0?b:0),C.attr("clip-path",l?"url(#nv-edge-clip-"+t.id()+")":""),k.attr("clip-path",l?"url(#nv-edge-clip-"+t.id()+")":"");var L=E.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});L.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),L.exit().remove(),L.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return s(e,t)}).style("stroke",function(e,t){return s(e,t)}),L.style("stroke-opacity",1).style("fill-opacity",.5);var A=L.selectAll("path.nv-area").data(function(e){return f(e)?[e]:[]});A.enter().append("path").attr("class","nv-area").attr("d",function(t){return d3.svg.area().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(d(o(t,n)))}).y0(function(t,n){return e.utils.NaNtoZero(v(u(t,n)))}).y1(function(e,t){return v(h.domain()[0]<=0?h.domain()[1]>=0?0:h.domain()[1]:h.domain()[0])}).apply(this,[t.values])}),L.exit().selectAll("path.nv-area").remove(),A.attr("d",function(t){return d3.svg.area().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(c(o(t,n)))}).y0(function(t,n){return e.utils.NaNtoZero(h(u(t,n)))}).y1(function(e,t){return h(h.domain()[0]<=0?h.domain()[1]>=0?0:h.domain()[1]:h.domain()[0])}).apply(this,[t.values])});var O=L.selectAll("path.nv-line").data(function(e){return[e.values]});O.enter().append("path").attr("class","nv-line").attr("d",d3.svg.line().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(d(o(t,n)))}).y(function(t,n){return e.utils.NaNtoZero(v(u(t,n)))})),O.attr("d",d3.svg.line().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(c(o(t,n)))}).y(function(t,n){return e.utils.NaNtoZero(h(u(t,n)))})),d=c.copy(),v=h.copy()}),m}var t=e.models.scatter(),n={top:0,right:0,bottom:0,left:0},r=960,i=500,s=e.utils.defaultColor(),o=function(e){return e.x},u=function(e){return e.y},a=function(e,t){return!isNaN(u(e,t))&&u(e,t)!==null},f=function(e){return e.area},l=!1,c,h,p="linear";t.size(16).sizeDomain([16,256]);var d,v;return m.dispatch=t.dispatch,m.scatter=t,d3.rebind(m,t,"id","interactive","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","forceX","forceY","forceSize","clipVoronoi","useVoronoi","clipRadius","padData","highlightPoint","clearHighlights"),m.options=e.utils.optionsFunc.bind(m),m.margin=function(e){return arguments.length?(n.top=typeof e.top!="undefined"?e.top:n.top,n.right=typeof e.right!="undefined"?e.right:n.right,n.bottom=typeof e.bottom!="undefined"?e.bottom:n.bottom,n.left=typeof e.left!="undefined"?e.left:n.left,m):n},m.width=function(e){return arguments.length?(r=e,m):r},m.height=function(e){return arguments.length?(i=e,m):i},m.x=function(e){return arguments.length?(o=e,t.x(e),m):o},m.y=function(e){return arguments.length?(u=e,t.y(e),m):u},m.clipEdge=function(e){return arguments.length?(l=e,m):l},m.color=function(n){return arguments.length?(s=e.utils.getColor(n),t.color(s),m):s},m.interpolate=function(e){return arguments.length?(p=e,m):p},m.defined=function(e){return arguments.length?(a=e,m):a},m.isArea=function(e){return arguments.length?(f=d3.functor(e),m):f},m},e.models.lineChart=function(){function N(m){return m.each(function(m){var x=d3.select(this),C=this,k=(a||parseInt(x.style("width"))||960)-o.left-o.right,L=(f||parseInt(x.style("height"))||400)-o.top-o.bottom;N.update=function(){x.call(N)},N.container=this,b.disabled=m.map(function(e){return!!e.disabled});if(!w){var A;w={};for(A in b)b[A]instanceof Array?w[A]=b[A].slice(0):w[A]=b[A]}if(!m||!m.length||!m.filter(function(e){return e.values.length}).length){var O=x.selectAll(".nv-noData").data([E]);return O.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),O.attr("x",o.left+k/2).attr("y",o.top+L/2).text(function(e){return e}),N}x.selectAll(".nv-noData").remove(),g=t.xScale(),y=t.yScale();var M=x.selectAll("g.nv-wrap.nv-lineChart").data([m]),_=M.enter().append("g").attr("class","nvd3 nv-wrap nv-lineChart").append("g"),D=M.select("g");_.append("rect").style("opacity",0),_.append("g").attr("class","nv-x nv-axis"),_.append("g").attr("class","nv-y nv-axis"),_.append("g").attr("class","nv-linesWrap"),_.append("g").attr("class","nv-legendWrap"),_.append("g").attr("class","nv-interactive"),D.select("rect").attr("width",k).attr("height",L>0?L:0),l&&(i.width(k),D.select(".nv-legendWrap").datum(m).call(i),o.top!=i.height()&&(o.top=i.height(),L=(f||parseInt(x.style("height"))||400)-o.top-o.bottom),M.select(".nv-legendWrap").attr("transform","translate(0,"+ -o.top+")")),M.attr("transform","translate("+o.left+","+o.top+")"),p&&D.select(".nv-y.nv-axis").attr("transform","translate("+k+",0)"),d&&(s.width(k).height(L).margin({left:o.left,top:o.top}).svgContainer(x).xScale(g),M.select(".nv-interactive").call(s)),t.width(k).height(L).color(m.map(function(e,t){return e.color||u(e,t)}).filter(function(e,t){return!m[t].disabled}));var P=D.select(".nv-linesWrap").datum(m.filter(function(e){return!e.disabled}));P.call(t),c&&(n.scale(g).ticks(k/100).tickSize(-L,0),D.select(".nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),D.select(".nv-x.nv-axis").call(n)),h&&(r.scale(y).ticks(L/36).tickSize(-k,0),D.select(".nv-y.nv-axis").call(r)),i.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),N.update()}),s.dispatch.on("elementMousemove",function(i){t.clearHighlights();var a,f,l,c=[];m.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){f=e.interactiveBisect(n.values,i.pointXValue,N.x()),t.highlightPoint(r,f,!0);var s=n.values[f];if(typeof s=="undefined")return;typeof a=="undefined"&&(a=s),typeof l=="undefined"&&(l=N.xScale()(N.x()(s,f))),c.push({key:n.key,value:N.y()(s,f),color:u(n,n.seriesIndex)})});if(c.length>2){var h=N.yScale().invert(i.mouseY),p=Math.abs(N.yScale().domain()[0]-N.yScale().domain()[1]),d=.03*p,g=e.nearestValueIndex(c.map(function(e){return e.value}),h,d);g!==null&&(c[g].highlight=!0)}var y=n.tickFormat()(N.x()(a,f));s.tooltip.position({left:l+o.left,top:i.mouseY+o.top}).chartContainer(C.parentNode).enabled(v).valueFormatter(function(e,t){return r.tickFormat()(e)}).data({value:y,series:c})(),s.renderGuideLine(l)}),s.dispatch.on("elementMouseout",function(e){S.tooltipHide(),t.clearHighlights()}),S.on("tooltipShow",function(e){v&&T(e,C.parentNode)}),S.on("changeState",function(e){typeof e.disabled!="undefined"&&m.length===e.disabled.length&&(m.forEach(function(t,n){t.disabled=e.disabled[n]}),b.disabled=e.disabled),N.update()})}),N}var t=e.models.line(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.interactiveGuideline(),o={top:30,right:20,bottom:50,left:60},u=e.utils.defaultColor(),a=null,f=null,l=!0,c=!0,h=!0,p=!1,d=!1,v=!0,m=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},g,y,b={},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),x=0;n.orient("bottom").tickPadding(7),r.orient(p?"right":"left");var T=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=m(i.series.key,a,f,i,N);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),N.dispatch=S,N.lines=t,N.legend=i,N.xAxis=n,N.yAxis=r,N.interactiveLayer=s,d3.rebind(N,t,"defined","isArea","x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","useVoronoi","id","interpolate"),N.options=e.utils.optionsFunc.bind(N),N.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,N):o},N.width=function(e){return arguments.length?(a=e,N):a},N.height=function(e){return arguments.length?(f=e,N):f},N.color=function(t){return arguments.length?(u=e.utils.getColor(t),i.color(u),N):u},N.showLegend=function(e){return arguments.length?(l=e,N):l},N.showXAxis=function(e){return arguments.length?(c=e,N):c},N.showYAxis=function(e){return arguments.length?(h=e,N):h},N.rightAlignYAxis=function(e){return arguments.length?(p=e,r.orient(e?"right":"left"),N):p},N.useInteractiveGuideline=function(e){return arguments.length?(d=e,e===!0&&(N.interactive(!1),N.useVoronoi(!1)),N):d},N.tooltips=function(e){return arguments.length?(v=e,N):v},N.tooltipContent=function(e){return arguments.length?(m=e,N):m},N.state=function(e){return arguments.length?(b=e,N):b},N.defaultState=function(e){return arguments.length?(w=e,N):w},N.noData=function(e){return arguments.length?(E=e,N):E},N.transitionDuration=function(e){return arguments.length?(x=e,N):x},N},e.models.linePlusBarChart=function(){function T(e){return e.each(function(e){var l=d3.select(this),c=this,v=(a||parseInt(l.style("width"))||960)-u.left-u.right,N=(f||parseInt(l.style("height"))||400)-u.top-u.bottom;T.update=function(){l.call(T)},b.disabled=e.map(function(e){return!!e.disabled});if(!w){var C;w={};for(C in b)b[C]instanceof Array?w[C]=b[C].slice(0):w[C]=b[C]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var k=l.selectAll(".nv-noData").data([E]);return k.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),k.attr("x",u.left+v/2).attr("y",u.top+N/2).text(function(e){return e}),T}l.selectAll(".nv-noData").remove();var L=e.filter(function(e){return!e.disabled&&e.bar}),A=e.filter(function(e){return!e.bar});m=A.filter(function(e){return!e.disabled}).length&&A.filter(function(e){return!e.disabled})[0].values.length?t.xScale():n.xScale(),g=n.yScale(),y=t.yScale();var O=d3.select(this).selectAll("g.nv-wrap.nv-linePlusBar").data([e]),M=O.enter().append("g").attr("class","nvd3 nv-wrap nv-linePlusBar").append("g"),_=O.select("g");M.append("g").attr("class","nv-x nv-axis"),M.append("g").attr("class","nv-y1 nv-axis"),M.append("g").attr("class","nv-y2 nv-axis"),M.append("g").attr("class","nv-barsWrap"),M.append("g").attr("class","nv-linesWrap"),M.append("g").attr("class","nv-legendWrap"),p&&(o.width(v/2),_.select(".nv-legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.bar?" (left axis)":" (right axis)"),e})).call(o),u.top!=o.height()&&(u.top=o.height(),N=(f||parseInt(l.style("height"))||400)-u.top-u.bottom),_.select(".nv-legendWrap").attr("transform","translate("+v/2+","+ -u.top+")")),O.attr("transform","translate("+u.left+","+u.top+")"),t.width(v).height(N).color(e.map(function(e,t){return e.color||h(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar})),n.width(v).height(N).color(e.map(function(e,t){return e.color||h(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar}));var D=_.select(".nv-barsWrap").datum(L.length?L:[{values:[]}]),P=_.select(".nv-linesWrap").datum(A[0]&&!A[0].disabled?A:[{values:[]}]);d3.transition(D).call(n),d3.transition(P).call(t),r.scale(m).ticks(v/100).tickSize(-N,0),_.select(".nv-x.nv-axis").attr("transform","translate(0,"+g.range()[0]+")"),d3.transition(_.select(".nv-x.nv-axis")).call(r),i.scale(g).ticks(N/36).tickSize(-v,0),d3.transition(_.select(".nv-y1.nv-axis")).style("opacity",L.length?1:0).call(i),s.scale(y).ticks(N/36).tickSize(L.length?0:-v,0),_.select(".nv-y2.nv-axis").style("opacity",A.length?1:0).attr("transform","translate("+v+",0)"),d3.transition(_.select(".nv-y2.nv-axis")).call(s),o.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),T.update()}),S.on("tooltipShow",function(e){d&&x(e,c.parentNode)}),S.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),b.disabled=t.disabled),T.update()})}),T}var t=e.models.line(),n=e.models.historicalBar(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.legend(),u={top:30,right:60,bottom:50,left:60},a=null,f=null,l=function(e){return e.x},c=function(e){return e.y},h=e.utils.defaultColor(),p=!0,d=!0,v=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},m,g,y,b={},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState");n.padData(!0),t.clipEdge(!1).padData(!0),r.orient("bottom").tickPadding(7).highlightZero(!1),i.orient("left"),s.orient("right");var x=function(n,o){var u=n.pos[0]+(o.offsetLeft||0),a=n.pos[1]+(o.offsetTop||0),f=r.tickFormat()(t.x()(n.point,n.pointIndex)),l=(n.series.bar?i:s).tickFormat()(t.y()(n.point,n.pointIndex)),c=v(n.series.key,f,l,n,T);e.tooltip.show([u,a],c,n.value<0?"n":"s",null,o)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),n.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],S.tooltipShow(e)}),n.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){d&&e.tooltip.cleanup()}),T.dispatch=S,T.legend=o,T.lines=t,T.bars=n,T.xAxis=r,T.y1Axis=i,T.y2Axis=s,d3.rebind(T,t,"defined","size","clipVoronoi","interpolate"),T.options=e.utils.optionsFunc.bind(T),T.x=function(e){return arguments.length?(l=e,t.x(e),n.x(e),T):l},T.y=function(e){return arguments.length?(c=e,t.y(e),n.y(e),T):c},T.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,T):u},T.width=function(e){return arguments.length?(a=e,T):a},T.height=function(e){return arguments.length?(f=e,T):f},T.color=function(t){return arguments.length?(h=e.utils.getColor(t),o.color(h),T):h},T.showLegend=function(e){return arguments.length?(p=e,T):p},T.tooltips=function(e){return arguments.length?(d=e,T):d},T.tooltipContent=function(e){return arguments.length?(v=e,T):v},T.state=function(e){return arguments.length?(b=e,T):b},T.defaultState=function(e){return arguments.length?(w=e,T):w},T.noData=function(e){return arguments.length?(E=e,T):E},T},e.models.lineWithFocusChart=function(){function k(e){return e.each(function(e){function R(e){var t=+(e=="e"),n=t?1:-1,r=O/3;return"M"+.5*n+","+r+"A6,6 0 0 "+t+" "+6.5*n+","+(r+6)+"V"+(2*r-6)+"A6,6 0 0 "+t+" "+.5*n+","+2*r+"Z"+"M"+2.5*n+","+(r+8)+"V"+(2*r-8)+"M"+4.5*n+","+(r+8)+"V"+(2*r-8)}function U(){a.empty()||a.extent(w),F.data([a.empty()?g.domain():w]).each(function(e,t){var n=g(e[0])-v.range()[0],r=v.range()[1]-g(e[1]);d3.select(this).select(".left").attr("width",n<0?0:n),d3.select(this).select(".right").attr("x",g(e[1])).attr("width",r<0?0:r)})}function z(){w=a.empty()?null:a.extent();var n=a.empty()?g.domain():a.extent();if(Math.abs(n[0]-n[1])<=1)return;T.brush({extent:n,brush:a}),U();var s=P.select(".nv-focus .nv-linesWrap").datum(e.filter(function(e){return!e.disabled}).map(function(e,r){return{key:e.key,values:e.values.filter(function(e,r){return t.x()(e,r)>=n[0]&&t.x()(e,r)<=n[1]})}}));s.call(t),P.select(".nv-focus .nv-x.nv-axis").call(r),P.select(".nv-focus .nv-y.nv-axis").call(i)}var S=d3.select(this),N=this,L=(h||parseInt(S.style("width"))||960)-f.left-f.right,A=(p||parseInt(S.style("height"))||400)-f.top-f.bottom-d,O=d-l.top-l.bottom;k.update=function(){S.call(k)},k.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var M=S.selectAll(".nv-noData").data([x]);return M.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),M.attr("x",f.left+L/2).attr("y",f.top+A/2).text(function(e){return e}),k}S.selectAll(".nv-noData").remove(),v=t.xScale(),m=t.yScale(),g=n.xScale(),y=n.yScale();var _=S.selectAll("g.nv-wrap.nv-lineWithFocusChart").data([e]),D=_.enter().append("g").attr("class","nvd3 nv-wrap nv-lineWithFocusChart").append("g"),P=_.select("g");D.append("g").attr("class","nv-legendWrap");var H=D.append("g").attr("class","nv-focus");H.append("g").attr("class","nv-x nv-axis"),H.append("g").attr("class","nv-y nv-axis"),H.append("g").attr("class","nv-linesWrap");var B=D.append("g").attr("class","nv-context");B.append("g").attr("class","nv-x nv-axis"),B.append("g").attr("class","nv-y nv-axis"),B.append("g").attr("class","nv-linesWrap"),B.append("g").attr("class","nv-brushBackground"),B.append("g").attr("class","nv-x nv-brush"),b&&(u.width(L),P.select(".nv-legendWrap").datum(e).call(u),f.top!=u.height()&&(f.top=u.height(),A=(p||parseInt(S.style("height"))||400)-f.top-f.bottom-d),P.select(".nv-legendWrap").attr("transform","translate(0,"+ -f.top+")")),_.attr("transform","translate("+f.left+","+f.top+")"),t.width(L).height(A).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),n.defined(t.defined()).width(L).height(O).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),P.select(".nv-context").attr("transform","translate(0,"+(A+f.bottom+l.top)+")");var j=P.select(".nv-context .nv-linesWrap").datum(e.filter(function(e){return!e.disabled}));d3.transition(j).call(n),r.scale(v).ticks(L/100).tickSize(-A,0),i.scale(m).ticks(A/36).tickSize(-L,0),P.select(".nv-focus .nv-x.nv-axis").attr("transform","translate(0,"+A+")"),a.x(g).on("brush",function(){var e=k.transitionDuration();k.transitionDuration(0),z(),k.transitionDuration(e)}),w&&a.extent(w);var F=P.select(".nv-brushBackground").selectAll("g").data([w||a.extent()]),I=F.enter().append("g");I.append("rect").attr("class","left").attr("x",0).attr("y",0).attr("height",O),I.append("rect").attr("class","right").attr("x",0).attr("y",0).attr("height",O);var q=P.select(".nv-x.nv-brush").call(a);q.selectAll("rect").attr("height",O),q.selectAll(".resize").append("path").attr("d",R),z(),s.scale(g).ticks(L/100).tickSize(-O,0),P.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),d3.transition(P.select(".nv-context .nv-x.nv-axis")).call(s),o.scale(y).ticks(O/36).tickSize(-L,0),d3.transition(P.select(".nv-context .nv-y.nv-axis")).call(o),P.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),u.dispatch.on("stateChange",function(e){k.update()}),T.on("tooltipShow",function(e){E&&C(e,N.parentNode)})}),k}var t=e.models.line(),n=e.models.line(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.axis(),u=e.models.legend(),a=d3.svg.brush(),f={top:30,right:30,bottom:30,left:60},l={top:0,right:30,bottom:20,left:60},c=e.utils.defaultColor(),h=null,p=null,d=100,v,m,g,y,b=!0,w=null,E=!0,S=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},x="No Data Available.",T=d3.dispatch("tooltipShow","tooltipHide","brush"),N=0;t.clipEdge(!0),n.interactive(!1),r.orient("bottom").tickPadding(5),i.orient("left"),s.orient("bottom").tickPadding(5),o.orient("left");var C=function(n,s){var o=n.pos[0]+(s.offsetLeft||0),u=n.pos[1]+(s.offsetTop||0),a=r.tickFormat()(t.x()(n.point,n.pointIndex)),f=i.tickFormat()(t.y()(n.point,n.pointIndex)),l=S(n.series.key,a,f,n,k);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+f.left,e.pos[1]+f.top],T.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){E&&e.tooltip.cleanup()}),k.dispatch=T,k.legend=u,k.lines=t,k.lines2=n,k.xAxis=r,k.yAxis=i,k.x2Axis=s,k.y2Axis=o,d3.rebind(k,t,"defined","isArea","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id"),k.options=e.utils.optionsFunc.bind(k),k.x=function(e){return arguments.length?(t.x(e),n.x(e),k):t.x},k.y=function(e){return arguments.length?(t.y(e),n.y(e),k):t.y},k.margin=function(e){return arguments.length?(f.top=typeof e.top!="undefined"?e.top:f.top,f.right=typeof e.right!="undefined"?e.right:f.right,f.bottom=typeof e.bottom!="undefined"?e.bottom:f.bottom,f.left=typeof e.left!="undefined"?e.left:f.left,k):f},k.margin2=function(e){return arguments.length?(l=e,k):l},k.width=function(e){return arguments.length?(h=e,k):h},k.height=function(e){return arguments.length?(p=e,k):p},k.height2=function(e){return arguments.length?(d=e,k):d},k.color=function(t){return arguments.length?(c=e.utils.getColor(t),u.color(c),k):c},k.showLegend=function(e){return arguments.length?(b=e,k):b},k.tooltips=function(e){return arguments.length?(E=e,k):E},k.tooltipContent=function(e){return arguments.length?(S=e,k):S},k.interpolate=function(e){return arguments.length?(t.interpolate(e),n.interpolate(e),k):t.interpolate()},k.noData=function(e){return arguments.length?(x=e,k):x},k.xTickFormat=function(e){return arguments.length?(r.tickFormat(e),s.tickFormat(e),k):r.tickFormat()},k.yTickFormat=function(e){return arguments.length?(i.tickFormat(e),o.tickFormat(e),k):i.tickFormat()},k.brushExtent=function(e){return arguments.length?(w=e,k):w},k.transitionDuration=function(e){return arguments.length?(N=e,k):N},k},e.models.linePlusBarWithFocusChart=function(){function B(e){return e.each(function(e){function tt(e){var t=+(e=="e"),n=t?1:-1,r=I/3;return"M"+.5*n+","+r+"A6,6 0 0 "+t+" "+6.5*n+","+(r+6)+"V"+(2*r-6)+"A6,6 0 0 "+t+" "+.5*n+","+2*r+"Z"+"M"+2.5*n+","+(r+8)+"V"+(2*r-8)+"M"+4.5*n+","+(r+8)+"V"+(2*r-8)}function nt(){h.empty()||h.extent(x),Y.data([h.empty()?k.domain():x]).each(function(e,t){var n=k(e[0])-k.range()[0],r=k.range()[1]-k(e[1]);d3.select(this).select(".left").attr("width",n<0?0:n),d3.select(this).select(".right").attr("x",k(e[1])).attr("width",r<0?0:r)})}function rt(){x=h.empty()?null:h.extent(),S=h.empty()?k.domain():h.extent(),D.brush({extent:S,brush:h}),nt(),r.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar})),t.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar}));var n=$.select(".nv-focus .nv-barsWrap").datum(R.length?R.map(function(e,t){return{key:e.key,values:e.values.filter(function(e,t){return r.x()(e,t)>=S[0]&&r.x()(e,t)<=S[1]})}}):[{values:[]}]),i=$.select(".nv-focus .nv-linesWrap").datum(U[0].disabled?[{values:[]}]:U.map(function(e,n){return{key:e.key,values:e.values.filter(function(e,n){return t.x()(e,n)>=S[0]&&t.x()(e,n)<=S[1]})}}));R.length?C=r.xScale():C=t.xScale(),s.scale(C).ticks(j/100).tickSize(-F,0),s.domain([Math.ceil(S[0]),Math.floor(S[1])]),$.select(".nv-x.nv-axis").call(s),n.call(r),i.call(t),$.select(".nv-focus .nv-x.nv-axis").attr("transform","translate(0,"+L.range()[0]+")"),u.scale(L).ticks(F/36).tickSize(-j,0),$.select(".nv-focus .nv-y1.nv-axis").style("opacity",R.length?1:0),a.scale(A).ticks(F/36).tickSize(R.length?0:-j,0),$.select(".nv-focus .nv-y2.nv-axis").style("opacity",U.length?1:0).attr("transform","translate("+C.range()[1]+",0)"),$.select(".nv-focus .nv-y1.nv-axis").call(u),$.select(".nv-focus .nv-y2.nv-axis").call(a)}var N=d3.select(this),P=this,j=(v||parseInt(N.style("width"))||960)-p.left-p.right,F=(m||parseInt(N.style("height"))||400)-p.top-p.bottom-g,I=g-d.top-d.bottom;B.update=function(){N.call(B)},B.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var q=N.selectAll(".nv-noData").data([_]);return q.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),q.attr("x",p.left+j/2).attr("y",p.top+F/2).text(function(e){return e}),B}N.selectAll(".nv-noData").remove();var R=e.filter(function(e){return!e.disabled&&e.bar}),U=e.filter(function(e){return!e.bar});C=r.xScale(),k=o.scale(),L=r.yScale(),A=t.yScale(),O=i.yScale(),M=n.yScale();var z=e.filter(function(e){return!e.disabled&&e.bar}).map(function(e){return e.values.map(function(e,t){return{x:y(e,t),y:b(e,t)}})}),W=e.filter(function(e){return!e.disabled&&!e.bar}).map(function(e){return e.values.map(function(e,t){return{x:y(e,t),y:b(e,t)}})});C.range([0,j]),k.domain(d3.extent(d3.merge(z.concat(W)),function(e){return e.x})).range([0,j]);var X=N.selectAll("g.nv-wrap.nv-linePlusBar").data([e]),V=X.enter().append("g").attr("class","nvd3 nv-wrap nv-linePlusBar").append("g"),$=X.select("g");V.append("g").attr("class","nv-legendWrap");var J=V.append("g").attr("class","nv-focus");J.append("g").attr("class","nv-x nv-axis"),J.append("g").attr("class","nv-y1 nv-axis"),J.append("g").attr("class","nv-y2 nv-axis"),J.append("g").attr("class","nv-barsWrap"),J.append("g").attr("class","nv-linesWrap");var K=V.append("g").attr("class","nv-context");K.append("g").attr("class","nv-x nv-axis"),K.append("g").attr("class","nv-y1 nv-axis"),K.append("g").attr("class","nv-y2 nv-axis"),K.append("g").attr("class","nv-barsWrap"),K.append("g").attr("class","nv-linesWrap"),K.append("g").attr("class","nv-brushBackground"),K.append("g").attr("class","nv-x nv-brush"),E&&(c.width(j/2),$.select(".nv-legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.bar?" (left axis)":" (right axis)"),e})).call(c),p.top!=c.height()&&(p.top=c.height(),F=(m||parseInt(N.style("height"))||400)-p.top-p.bottom-g),$.select(".nv-legendWrap").attr("transform","translate("+j/2+","+ -p.top+")")),X.attr("transform","translate("+p.left+","+p.top+")"),i.width(j).height(I).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar})),n.width(j).height(I).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar}));var Q=$.select(".nv-context .nv-barsWrap").datum(R.length?R:[{values:[]}]),G=$.select(".nv-context .nv-linesWrap").datum(U[0].disabled?[{values:[]}]:U);$.select(".nv-context").attr("transform","translate(0,"+(F+p.bottom+d.top)+")"),Q.call(i),G.call(n),h.x(k).on("brush",rt),x&&h.extent(x);var Y=$.select(".nv-brushBackground").selectAll("g").data([x||h.extent()]),Z=Y.enter().append("g");Z.append("rect").attr("class","left").attr("x",0).attr("y",0).attr("height",I),Z.append("rect").attr("class","right").attr("x",0).attr("y",0).attr("height",I);var et=$.select(".nv-x.nv-brush").call(h);et.selectAll("rect").attr("height",I),et.selectAll(".resize").append("path").attr("d",tt),o.ticks(j/100).tickSize(-I,0),$.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+O.range()[0]+")"),$.select(".nv-context .nv-x.nv-axis").call(o),f.scale(O).ticks(I/36).tickSize(-j,0),$.select(".nv-context .nv-y1.nv-axis").style("opacity",R.length?1:0).attr("transform","translate(0,"+k.range()[0]+")"),$.select(".nv-context .nv-y1.nv-axis").call(f),l.scale(M).ticks(I/36).tickSize(R.length?0:-j,0),$.select(".nv-context .nv-y2.nv-axis").style("opacity",U.length?1:0).attr("transform","translate("+k.range()[1]+",0)"),$.select(".nv-context .nv-y2.nv-axis").call(l),c.dispatch.on("stateChange",function(e){B.update()}),D.on("tooltipShow",function(e){T&&H(e,P.parentNode)}),rt()}),B}var t=e.models.line(),n=e.models.line(),r=e.models.historicalBar(),i=e.models.historicalBar(),s=e.models.axis(),o=e.models.axis(),u=e.models.axis(),a=e.models.axis(),f=e.models.axis(),l=e.models.axis(),c=e.models.legend(),h=d3.svg.brush(),p={top:30,right:30,bottom:30,left:60},d={top:0,right:30,bottom:20,left:60},v=null,m=null,g=100,y=function(e){return e.x},b=function(e){return e.y},w=e.utils.defaultColor(),E=!0,S,x=null,T=!0,N=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},C,k,L,A,O,M,_="No Data Available.",D=d3.dispatch("tooltipShow","tooltipHide","brush"),P=0;t.clipEdge(!0),n.interactive(!1),s.orient("bottom").tickPadding(5),u.orient("left"),a.orient("right"),o.orient("bottom").tickPadding(5),f.orient("left"),l.orient("right");var H=function(n,r){S&&(n.pointIndex+=Math.ceil(S[0]));var i=n.pos[0]+(r.offsetLeft||0),o=n.pos[1]+(r.offsetTop||0),f=s.tickFormat()(t.x()(n.point,n.pointIndex)),l=(n.series.bar?u:a).tickFormat()(t.y()(n.point,n.pointIndex)),c=N(n.series.key,f,l,n,B);e.tooltip.show([i,o],c,n.value<0?"n":"s",null,r)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),r.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),r.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),D.on("tooltipHide",function(){T&&e.tooltip.cleanup()}),B.dispatch=D,B.legend=c,B.lines=t,B.lines2=n,B.bars=r,B.bars2=i,B.xAxis=s,B.x2Axis=o,B.y1Axis=u,B.y2Axis=a,B.y3Axis=f,B.y4Axis=l,d3.rebind(B,t,"defined","size","clipVoronoi","interpolate"),B.options=e.utils.optionsFunc.bind(B),B.x=function(e){return arguments.length?(y=e,t.x(e),r.x(e),B):y},B.y=function(e){return arguments.length?(b=e,t.y(e),r.y(e),B):b},B.margin=function(e){return arguments.length?(p.top=typeof e.top!="undefined"?e.top:p.top,p.right=typeof e.right!="undefined"?e.right:p.right,p.bottom=typeof e.bottom!="undefined"?e.bottom:p.bottom,p.left=typeof e.left!="undefined"?e.left:p.left,B):p},B.width=function(e){return arguments.length?(v=e,B):v},B.height=function(e){return arguments.length?(m=e,B):m},B.color=function(t){return arguments.length?(w=e.utils.getColor(t),c.color(w),B):w},B.showLegend=function(e){return arguments.length?(E=e,B):E},B.tooltips=function(e){return arguments.length?(T=e,B):T},B.tooltipContent=function(e){return arguments.length?(N=e,B):N},B.noData=function(e){return arguments.length?(_=e,B):_},B.brushExtent=function(e){return arguments.length?(x=e,B):x},B},e.models.multiBar=function(){function C(e){return e.each(function(e){var g=n-t.left-t.right,C=r-t.top-t.bottom,k=d3.select(this);d&&e.length&&(d=[{values:e[0].values.map(function(e){return{x:e.x,y:0,series:e.series,size:.01}})}]),c&&(e=d3.layout.stack().offset(h).values(function(e){return e.values}).y(a)(!e.length&&d?d:e)),e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})}),c&&e[0].values.map(function(t,n){var r=0,i=0;e.map(function(e){var t=e.values[n];t.size=Math.abs(t.y),t.y<0?(t.y1=i,i-=t.size):(t.y1=t.size+r,r+=t.size)})});var L=y&&b?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0,y1:e.y1}})});i.domain(y||d3.merge(L).map(function(e){return e.x})).rangeBands(w||[0,g],S),s.domain(b||d3.extent(d3.merge(L).map(function(e){return c?e.y>0?e.y1:e.y1+e.y:e.y}).concat(f))).range(E||[C,0]),i.domain()[0]===i.domain()[1]&&(i.domain()[0]?i.domain([i.domain()[0]-i.domain()[0]*.01,i.domain()[1]+i.domain()[1]*.01]):i.domain([-1,1])),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]+s.domain()[0]*.01,s.domain()[1]-s.domain()[1]*.01]):s.domain([-1,1])),T=T||i,N=N||s;var A=k.selectAll("g.nv-wrap.nv-multibar").data([e]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-multibar"),M=O.append("defs"),_=O.append("g"),D=A.select("g");_.append("g").attr("class","nv-groups"),A.attr("transform","translate("+t.left+","+t.top+")"),M.append("clipPath").attr("id","nv-edge-clip-"+o).append("rect"),A.select("#nv-edge-clip-"+o+" rect").attr("width",g).attr("height",C),D.attr("clip-path",l?"url(#nv-edge-clip-"+o+")":"");var P=A.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e,t){return t});P.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),P.exit().selectAll("rect.nv-bar").attr("y",function(e){return c?N(e.y0):N(0)}).attr("height",0).remove(),P.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return p(e,t)}).style("stroke",function(e,t){return p(e,t)}),P.style("stroke-opacity",1).style("fill-opacity",.75);var H=P.selectAll("rect.nv-bar").data(function(t){return d&&!e.length?d.values:t.values});H.exit().remove();var B=H.enter().append("rect").attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).attr("x",function(t,n,r){return c?0:r*i.rangeBand()/e.length}).attr("y",function(e){return N(c?e.y0:0)}).attr("height",0).attr("width",i.rangeBand()/(c?1:e.length)).attr("transform",function(e,t){return"translate("+i(u(e,t))+",0)"});H.style("fill",function(e,t,n){return p(e,n,t)}).style("stroke",function(e,t,n){return p(e,n,t)}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),x.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),x.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){x.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){x.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}),H.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).attr("transform",function(e,t){return"translate("+i(u(e,t))+",0)"}),v&&(m||(m=e.map(function(){return!0})),H.style("fill",function(e,t,n){return d3.rgb(v(e,t)).darker(m.map(function(e,t){return t}).filter(function(e,t){return!m[t]})[n]).toString()}).style("stroke",function(e,t,n){return d3.rgb(v(e,t)).darker(m.map(function(e,t){return t}).filter(function(e,t){return!m[t]})[n]).toString()})),c?H.attr("y",function(e,t){return s(c?e.y1:0)}).attr("height",function(e,t){return Math.max(Math.abs(s(e.y+(c?e.y0:0))-s(c?e.y0:0)),1)}).attr("x",function(t,n){return c?0:t.series*i.rangeBand()/e.length}).attr("width",i.rangeBand()/(c?1:e.length)):H.attr("x",function(t,n){return t.series*i.rangeBand()/e.length}).attr("width",i.rangeBand()/e.length).attr("y",function(e,t){return a(e,t)<0?s(0):s(0)-s(a(e,t))<1?s(0)-1:s(a(e,t))||0}).attr("height",function(e,t){return Math.max(Math.abs(s(a(e,t))-s(0)),1)||0}),T=i.copy(),N=s.copy()}),C}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=d3.scale.ordinal(),s=d3.scale.linear(),o=Math.floor(Math.random()*1e4),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=!0,c=!1,h="zero",p=e.utils.defaultColor(),d=!1,v=null,m,g=1200,y,b,w,E,S=.1,x=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),T,N;return C.dispatch=x,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(u=e,C):u},C.y=function(e){return arguments.length?(a=e,C):a},C.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,C):t},C.width=function(e){return arguments.length?(n=e,C):n},C.height=function(e){return arguments.length?(r=e,C):r},C.xScale=function(e){return arguments.length?(i=e,C):i},C.yScale=function(e){return arguments.length?(s=e,C):s},C.xDomain=function(e){return arguments.length?(y=e,C):y},C.yDomain=function(e){return arguments.length?(b=e,C):b},C.xRange=function(e){return arguments.length?(w=e,C):w},C.yRange=function(e){return arguments.length?(E=e,C):E},C.forceY=function(e){return arguments.length?(f=e,C):f},C.stacked=function(e){return arguments.length?(c=e,C):c},C.stackOffset=function(e){return arguments.length?(h=e,C):h},C.clipEdge=function(e){return arguments.length?(l=e,C):l},C.color=function(t){return arguments.length?(p=e.utils.getColor(t),C):p},C.barColor=function(t){return arguments.length?(v=e.utils.getColor(t),C):v},C.disabled=function(e){return arguments.length?(m=e,C):m},C.id=function(e){return arguments.length?(o=e,C):o},C.hideable=function(e){return arguments.length?(d=e,C):d},C.delay=function(e){return arguments.length?(g=e,C):g},C.groupSpacing=function(e){return arguments.length?(S=e,C):S},C},e.models.multiBarChart=function(){function A(e){return e.each(function(e){var b=d3.select(this),k=this,O=(u||parseInt(b.style("width"))||960)-o.left-o.right,M=(a||parseInt(b.style("height"))||400)-o.top-o.bottom;A.update=function(){b.call(A)},A.container=this,S.disabled=e.map(function(e){return!!e.disabled});if(!x){var _;x={};for(_ in S)S[_]instanceof Array?x[_]=S[_].slice(0):x[_]=S[_]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var D=b.selectAll(".nv-noData").data([T]);return D.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),D.attr("x",o.left+O/2).attr("y",o.top+M/2).text(function(e){return e}),A}b.selectAll(".nv-noData").remove(),w=t.xScale(),E=t.yScale();var P=b.selectAll("g.nv-wrap.nv-multiBarWithLegend").data([e]),H=P.enter().append("g").attr("class","nvd3 nv-wrap nv-multiBarWithLegend").append("g"),B=P.select("g");H.append("g").attr("class","nv-x nv-axis"),H.append("g").attr("class","nv-y nv-axis"),H.append("g").attr("class","nv-barsWrap"),H.append("g").attr("class","nv-legendWrap"),H.append("g").attr("class","nv-controlsWrap"),c&&(i.width(O-C()),t.barColor()&&e.forEach(function(e,t){e.color=d3.rgb("#ccc").darker(t*1.5).toString()}),B.select(".nv-legendWrap").datum(e).call(i),o.top!=i.height()&&(o.top=i.height(),M=(a||parseInt(b.style("height"))||400)-o.top-o.bottom),B.select(".nv-legendWrap").attr("transform","translate("+C()+","+ -o.top+")"));if(l){var j=[{key:"Grouped",disabled:t.stacked()},{key:"Stacked",disabled:!t.stacked()}];s.width(C()).color(["#444","#444","#444"]),B.select(".nv-controlsWrap").datum(j).attr("transform","translate(0,"+ -o.top+")").call(s)}P.attr("transform","translate("+o.left+","+o.top+")"),d&&B.select(".nv-y.nv-axis").attr("transform","translate("+O+",0)"),t.disabled(e.map(function(e){return e.disabled})).width(O).height(M).color(e.map(function(e,t){return e.color||f(e,t)}).filter(function(t,n){return!e[n].disabled}));var F=B.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));F.call(t);if(h){n.scale(w).ticks(O/100).tickSize(-M,0),B.select(".nv-x.nv-axis").attr("transform","translate(0,"+E.range()[0]+")"),B.select(".nv-x.nv-axis").call(n);var I=B.select(".nv-x.nv-axis > g").selectAll("g");I.selectAll("line, text").style("opacity",1);if(m){var q=function(e,t){return"translate("+e+","+t+")"},R=5,U=17;I.selectAll("text").attr("transform",function(e,t,n){return q(0,n%2==0?R:U)});var z=d3.selectAll(".nv-x.nv-axis .nv-wrap g g text")[0].length;B.selectAll(".nv-x.nv-axis .nv-axisMaxMin text").attr("transform",function(e,t){return q(0,t===0||z%2!==0?U:R)})}v&&I.filter(function(t,n){return n%Math.ceil(e[0].values.length/(O/100))!==0}).selectAll("text, line").style("opacity",0),g&&I.selectAll(".tick text").attr("transform","rotate("+g+" 0,0)").style("text-anchor",g>0?"start":"end"),B.select(".nv-x.nv-axis").selectAll("g.nv-axisMaxMin text").style("opacity",1)}p&&(r.scale(E).ticks(M/36).tickSize(-O,0),B.select(".nv-y.nv-axis").call(r)),i.dispatch.on("stateChange",function(e){S=e,N.stateChange(S),A.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;j=j.map(function(e){return e.disabled=!0,e}),e.disabled=!1;switch(e.key){case"Grouped":t.stacked(!1);break;case"Stacked":t.stacked(!0)}S.stacked=t.stacked(),N.stateChange(S),A.update()}),N.on("tooltipShow",function(e){y&&L(e,k.parentNode)}),N.on("changeState",function(n){typeof n.disabled!="undefined"&&(e.forEach(function(e,t){e.disabled=n.disabled[t]}),S.disabled=n.disabled),typeof n.stacked!="undefined"&&(t.stacked(n.stacked),S.stacked=n.stacked),A.update()})}),A}var t=e.models.multiBar(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o={top:30,right:20,bottom:50,left:60},u=null,a=null,f=e.utils.defaultColor(),l=!0,c=!0,h=!0,p=!0,d=!1,v=!0,m=!1,g=0,y=!0,b=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" on "+t+"

    "},w,E,S={stacked:!1},x=null,T="No Data Available.",N=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),C=function(){return l?180:0},k=0;t.stacked(!1),n.orient("bottom").tickPadding(7).highlightZero(!0).showMaxMin(!1).tickFormat(function(e){return e}),r.orient(d?"right":"left").tickFormat(d3.format(",.1f")),s.updateState(!1);var L=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=b(i.series.key,a,f,i,A);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],N.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){N.tooltipHide(e)}),N.on("tooltipHide",function(){y&&e.tooltip.cleanup()}),A.dispatch=N,A.multibar=t,A.legend=i,A.xAxis=n,A.yAxis=r,d3.rebind(A,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","stacked","stackOffset","delay","barColor","groupSpacing"),A.options=e.utils.optionsFunc.bind(A),A.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,A):o},A.width=function(e){return arguments.length?(u=e,A):u},A.height=function(e){return arguments.length?(a=e,A):a},A.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),A):f},A.showControls=function(e){return arguments.length?(l=e,A):l},A.showLegend=function(e){return arguments.length?(c=e,A):c},A.showXAxis=function(e){return arguments.length?(h=e,A):h},A.showYAxis=function(e){return arguments.length?(p=e,A):p},A.rightAlignYAxis=function(e){return arguments.length?(d=e,r.orient(e?"right":"left"),A):d},A.reduceXTicks=function(e){return arguments.length?(v=e,A):v},A.rotateLabels=function(e){return arguments.length?(g=e,A):g},A.staggerLabels=function(e){return arguments.length?(m=e,A):m},A.tooltip=function(e){return arguments.length?(b=e,A):b},A.tooltips=function(e){return arguments.length?(y=e,A):y},A.tooltipContent=function(e){return arguments.length?(b=e,A):b},A.state=function(e){return arguments.length?(S=e,A):S},A.defaultState=function(e){return arguments.length?(x=e,A):x},A.noData=function(e){return arguments.length?(T=e,A):T},A.transitionDuration=function(e){return arguments.length?(k=e,A):k},A},e.models.multiBarHorizontal=function(){function C(e){return e.each(function(e){var i=n-t.left-t.right,y=r-t.top-t.bottom,C=d3.select(this);p&&(e=d3.layout.stack().offset("zero").values(function(e){return e.values}).y(a)(e)),e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})}),p&&e[0].values.map(function(t,n){var r=0,i=0;e.map(function(e){var t=e.values[n];t.size=Math.abs(t.y),t.y<0?(t.y1=i-t.size,i-=t.size):(t.y1=r,r+=t.size)})});var k=b&&w?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0,y1:e.y1}})});s.domain(b||d3.merge(k).map(function(e){return e.x})).rangeBands(E||[0,y],.1),o.domain(w||d3.extent(d3.merge(k).map(function(e){return p?e.y>0?e.y1+e.y:e.y1:e.y}).concat(f))),d&&!p?o.range(S||[o.domain()[0]<0?m:0,i-(o.domain()[1]>0?m:0)]):o.range(S||[0,i]),T=T||s,N=N||d3.scale.linear().domain(o.domain()).range([o(0),o(0)]);var L=d3.select(this).selectAll("g.nv-wrap.nv-multibarHorizontal").data([e]),A=L.enter().append("g").attr("class","nvd3 nv-wrap nv-multibarHorizontal"),O=A.append("defs"),M=A.append("g"),_=L.select("g");M.append("g").attr("class","nv-groups"),L.attr("transform","translate("+t.left+","+t.top+")");var D=L.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e,t){return t});D.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),D.exit().style("stroke-opacity",1e-6).style("fill-opacity",1e-6).remove(),D.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return l(e,t)}).style("stroke",function(e,t){return l(e,t)}),D.style("stroke-opacity",1).style("fill-opacity",.75);var P=D.selectAll("g.nv-bar").data(function(e){return e.values});P.exit().remove();var H=P.enter().append("g").attr("transform",function(t,n,r){return"translate("+N(p?t.y0:0)+","+(p?0:r*s.rangeBand()/e.length+s(u(t,n)))+")"});H.append("rect").attr("width",0).attr("height",s.rangeBand()/(p?1:e.length)),P.on("mouseover",function(t,n){d3.select(this).classed("hover",!0),x.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[o(a(t,n)+(p?t.y0:0)),s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),x.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){x.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length,o(a(t,n)+(p?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){x.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length,o(a(t,n)+(p?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}),H.append("text"),d&&!p?(P.select("text").attr("text-anchor",function(e,t){return a(e,t)<0?"end":"start"}).attr("y",s.rangeBand()/(e.length*2)).attr("dy",".32em").text(function(e,t){return g(a(e,t))}),P.select("text").attr("x",function(e,t){return a(e,t)<0?-4:o(a(e,t))-o(0)+4})):P.selectAll("text").text(""),v&&!p?(H.append("text").classed("nv-bar-label",!0),P.select("text.nv-bar-label").attr("text-anchor",function(e,t){return a(e,t)<0?"start":"end"}).attr("y",s.rangeBand()/(e.length*2)).attr("dy",".32em").text(function(e,t){return u(e,t)}),P.select("text.nv-bar-label").attr("x",function(e,t){return a(e,t)<0?o(0)-o(a(e,t))+4:-4})):P.selectAll("text.nv-bar-label").text(""),P.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}),c&&(h||(h=e.map(function(){return!0})),P.style("fill",function(e,t,n){return d3.rgb(c(e,t)).darker(h.map(function(e,t){return t}).filter(function(e,t){return!h[t]})[n]).toString()}).style("stroke",function(e,t,n){return d3.rgb(c(e,t)).darker(h.map(function(e,t){return t}).filter(function(e,t){return!h[t]})[n]).toString()})),p?P.attr("transform",function(e,t){return"translate("+o(e.y1)+","+s(u(e,t))+")"}).select("rect").attr("width",function(e,t){return Math.abs(o(a(e,t)+e.y0)-o(e.y0))}).attr("height",s.rangeBand()):P.attr("transform",function(t,n){return"translate("+(a(t,n)<0?o(a(t,n)):o(0))+","+(t.series*s.rangeBand()/e.length+s(u(t,n)))+")"}).select("rect").attr("height",s.rangeBand()/e.length).attr("width",function(e,t){return Math.max(Math.abs(o(a(e,t))-o(0)),1)}),T=s.copy(),N=o.copy()}),C}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.ordinal(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=e.utils.defaultColor(),c=null,h,p=!1,d=!1,v=!1,m=60,g=d3.format(",.2f"),y=1200,b,w,E,S,x=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),T,N;return C.dispatch=x,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(u=e,C):u},C.y=function(e){return arguments.length?(a=e,C):a},C.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,C):t},C.width=function(e){return arguments.length?(n=e,C):n},C.height=function(e){return arguments.length?(r=e,C):r},C.xScale=function(e){return arguments.length?(s=e,C):s},C.yScale=function(e){return arguments.length?(o=e,C):o},C.xDomain=function(e){return arguments.length?(b=e,C):b},C.yDomain=function(e){return arguments.length?(w=e,C):w},C.xRange=function(e){return arguments.length?(E=e,C):E},C.yRange=function(e){return arguments.length?(S=e,C):S},C.forceY=function(e){return arguments.length?(f=e,C):f},C.stacked=function(e){return arguments.length?(p=e,C):p},C.color=function(t){return arguments.length?(l=e.utils.getColor(t),C):l},C.barColor=function(t){return arguments.length?(c=e.utils.getColor(t),C):c},C.disabled=function(e){return arguments.length?(h=e,C):h},C.id=function(e){return arguments.length?(i=e,C):i},C.delay=function(e){return arguments.length?(y=e,C):y},C.showValues=function(e){return arguments.length?(d=e,C):d},C.showBarLabels=function(e){return arguments.length?(v=e,C):v},C.valueFormat=function(e){return arguments.length?(g=e,C):g},C.valuePadding=function(e){return arguments.length?(m=e,C):m},C},e.models.multiBarHorizontalChart=function(){function C(e){return e.each(function(e){var d=d3.select(this),m=this,T=(u||parseInt(d.style("width"))||960)-o.left-o.right,k=(a||parseInt(d.style("height"))||400)-o.top-o.bottom;C.update=function(){d.call(C)},C.container=this,b.disabled=e.map(function(e){return!!e.disabled});if(!w){var L;w={};for(L in b)b[L]instanceof Array?w[L]=b[L].slice(0):w[L]=b[L]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var A=d.selectAll(".nv-noData").data([E]);return A.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),A.attr("x",o.left+T/2).attr("y",o.top+k/2).text(function(e){return e}),C}d.selectAll(".nv-noData").remove(),g=t.xScale(),y=t.yScale();var O=d.selectAll("g.nv-wrap.nv-multiBarHorizontalChart").data([e]),M=O.enter().append("g").attr("class","nvd3 nv-wrap nv-multiBarHorizontalChart").append("g"),_=O.select("g");M.append("g").attr("class","nv-x nv-axis"),M.append("g").attr("class","nv-y nv-axis").append("g").attr("class","nv-zeroLine").append("line"),M.append("g").attr("class","nv-barsWrap"),M.append("g").attr("class","nv-legendWrap"),M.append("g").attr("class","nv-controlsWrap"),c&&(i.width(T-x()),t.barColor()&&e.forEach(function(e,t){e.color=d3.rgb("#ccc").darker(t*1.5).toString()}),_.select(".nv-legendWrap").datum(e).call(i),o.top!=i.height()&&(o.top=i.height(),k=(a||parseInt(d.style("height"))||400)-o.top-o.bottom),_.select(".nv-legendWrap").attr("transform","translate("+x()+","+ -o.top+")"));if(l){var D=[{key:"Grouped",disabled:t.stacked()},{key:"Stacked",disabled:!t.stacked()}];s.width(x()).color(["#444","#444","#444"]),_.select(".nv-controlsWrap").datum(D).attr("transform","translate(0,"+ -o.top+")").call(s)}O.attr("transform","translate("+o.left+","+o.top+")"),t.disabled(e.map(function(e){return e.disabled})).width(T).height(k).color(e.map(function(e,t){return e.color||f(e,t)}).filter(function(t,n){return!e[n].disabled}));var P=_.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));P.call(t);if(h){n.scale(g).ticks(k/24).tickSize(-T,0),_.select(".nv-x.nv-axis").call(n);var H=_.select(".nv-x.nv-axis").selectAll("g");H.selectAll("line, text")}p&&(r.scale(y).ticks(T/100).tickSize(-k,0),_.select(".nv-y.nv-axis").attr("transform","translate(0,"+k+")"),_.select(".nv-y.nv-axis").call(r)),_.select(".nv-zeroLine line").attr("x1",y(0)).attr("x2",y(0)).attr("y1",0).attr("y2",-k),i.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),C.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;D=D.map(function(e){return e.disabled=!0,e}),e.disabled=!1;switch(e.key){case"Grouped":t.stacked(!1);break;case"Stacked":t.stacked(!0)}b.stacked=t.stacked(),S.stateChange(b),C.update()}),S.on("tooltipShow",function(e){v&&N(e,m.parentNode)}),S.on("changeState",function(n){typeof n.disabled!="undefined"&&(e.forEach(function(e,t){e.disabled=n.disabled[t]}),b.disabled=n.disabled),typeof n.stacked!="undefined"&&(t.stacked(n.stacked),b.stacked=n.stacked),C.update()})}),C}var t=e.models.multiBarHorizontal(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend().height(30),s=e.models.legend().height(30),o={top:30,right:20,bottom:50,left:60},u=null,a=null,f=e.utils.defaultColor(),l=!0,c=!0,h=!0,p=!0,d=!1,v=!0,m=function(e,t,n,r,i){return"

    "+e+" - "+t+"

    "+"

    "+n+"

    "},g,y,b={stacked:d},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),x=function(){return l?180:0},T=0;t.stacked(d),n.orient("left").tickPadding(5).highlightZero(!1).showMaxMin(!1).tickFormat(function(e){return e}),r.orient("bottom").tickFormat(d3.format(",.1f")),s.updateState(!1);var N=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=m(i.series.key,a,f,i,C);e.tooltip.show([o,u],l,i.value<0?"e":"w",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),C.dispatch=S,C.multibar=t,C.legend=i,C.xAxis=n,C.yAxis=r,d3.rebind(C,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","delay","showValues","showBarLabels","valueFormat","stacked","barColor"),C.options=e.utils.optionsFunc.bind(C),C.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,C):o},C.width=function(e){return arguments.length?(u=e,C):u},C.height=function(e){return arguments.length?(a=e,C):a},C.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),C):f},C.showControls=function(e){return arguments.length?(l=e,C):l},C.showLegend=function(e){return arguments.length?(c=e,C):c},C.showXAxis=function(e){return arguments.length?(h=e,C):h},C.showYAxis=function(e){return arguments.length?(p=e,C):p},C.tooltip=function(e){return arguments.length?(m=e,C):m},C.tooltips=function(e){return arguments.length?(v=e,C):v},C.tooltipContent=function(e){return arguments.length?(m=e,C):m},C.state=function(e){return arguments.length?(b=e,C):b},C.defaultState=function(e){return arguments.length?(w=e,C):w},C.noData=function(e){return arguments.length?(E=e,C):E},C.transitionDuration=function(e){return arguments.length?(T=e,C):T},C},e.models.multiChart=function(){function C(e){return e.each(function(e){var u=d3.select(this),f=this;C.update=function(){u.call(C)},C.container=this;var k=(r||parseInt(u.style("width"))||960)-t.left-t.right,L=(i||parseInt(u.style("height"))||400)-t.top-t.bottom,A=e.filter(function(e){return!e.disabled&&e.type=="line"&&e.yAxis==1}),O=e.filter(function(e){return!e.disabled&&e.type=="line"&&e.yAxis==2}),M=e.filter(function(e){return!e.disabled&&e.type=="bar"&&e.yAxis==1}),_=e.filter(function(e){return!e.disabled&&e.type=="bar"&&e.yAxis==2}),D=e.filter(function(e){return!e.disabled&&e.type=="area"&&e.yAxis==1}),P=e.filter(function(e){return!e.disabled&&e.type=="area"&&e.yAxis==2}),H=e.filter(function(e){return!e.disabled&&e.yAxis==1}).map(function(e){return e.values.map(function(e,t){return{x:e.x,y:e.y}})}),B=e.filter(function(e){return!e.disabled&&e.yAxis==2}).map(function(e){return e.values.map(function(e,t){return{x:e.x,y:e.y}})});a.domain(d3.extent(d3.merge(H.concat(B)),function(e){return e.x})).range([0,k]);var j=u.selectAll("g.wrap.multiChart").data([e]),F=j.enter().append("g").attr("class","wrap nvd3 multiChart").append("g");F.append("g").attr("class","x axis"),F.append("g").attr("class","y1 axis"),F.append("g").attr("class","y2 axis"),F.append("g").attr("class","lines1Wrap"),F.append("g").attr("class","lines2Wrap"),F.append("g").attr("class","bars1Wrap"),F.append("g").attr("class","bars2Wrap"),F.append("g").attr("class","stack1Wrap"),F.append("g").attr("class","stack2Wrap"),F.append("g").attr("class","legendWrap");var I=j.select("g");s&&(x.width(k/2),I.select(".legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.yAxis==1?"":" (right axis)"),e})).call(x),t.top!=x.height()&&(t.top=x.height(),L=(i||parseInt(u.style("height"))||400)-t.top-t.bottom),I.select(".legendWrap").attr("transform","translate("+k/2+","+ -t.top+")")),d.width(k).height(L).interpolate("monotone").color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="line"})),v.width(k).height(L).interpolate("monotone").color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="line"})),m.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="bar"})),g.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="bar"})),y.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="area"})),b.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="area"})),I.attr("transform","translate("+t.left+","+t.top+")");var q=I.select(".lines1Wrap").datum(A),R=I.select(".bars1Wrap").datum(M),U=I.select(".stack1Wrap").datum(D),z=I.select(".lines2Wrap").datum(O),W=I.select(".bars2Wrap").datum(_),X=I.select(".stack2Wrap").datum(P),V=D.length?D.map(function(e){return e.values}).reduce(function(e,t){return e.map(function(e,n){return{x:e.x,y:e.y+t[n].y}})}).concat([{x:0,y:0}]):[],$=P.length?P.map(function(e){return e.values}).reduce(function(e,t){return e.map(function(e,n){return{x:e.x,y:e.y+t[n].y}})}).concat([{x:0,y:0}]):[];h.domain(l||d3.extent(d3.merge(H).concat(V),function(e){return e.y})).range([0,L]),p.domain(c||d3.extent(d3.merge(B).concat($),function(e){return e.y})).range([0,L]),d.yDomain(h.domain()),m.yDomain(h.domain()),y.yDomain(h.domain()),v.yDomain(p.domain()),g.yDomain(p.domain()),b.yDomain(p.domain()),D.length&&d3.transition(U).call(y),P.length&&d3.transition(X).call(b),M.length&&d3.transition(R).call(m),_.length&&d3.transition(W).call(g),A.length&&d3.transition(q).call(d),O.length&&d3.transition(z).call(v),w.ticks(k/100).tickSize(-L,0),I.select(".x.axis").attr("transform","translate(0,"+L+")"),d3.transition(I.select(".x.axis")).call(w),E.ticks(L/36).tickSize(-k,0),d3.transition(I.select(".y1.axis")).call(E),S.ticks(L/36).tickSize(-k,0),d3.transition(I.select(".y2.axis")).call(S),I.select(".y2.axis").style("opacity",B.length?1:0).attr("transform","translate("+a.range()[1]+",0)"),x.dispatch.on("stateChange",function(e){C.update()}),T.on("tooltipShow",function(e){o&&N(e,f.parentNode)})}),C}var t={top:30,right:20,bottom:50,left:60},n=d3.scale.category20().range(),r=null,i=null,s=!0,o=!0,u=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},a,f,l,c,a=d3.scale.linear(),h=d3.scale.linear(),p=d3.scale.linear(),d=e.models.line().yScale(h),v=e.models.line().yScale(p),m=e.models.multiBar().stacked(!1).yScale(h),g=e.models.multiBar().stacked(!1).yScale(p),y=e.models.stackedArea().yScale(h),b=e.models.stackedArea().yScale(p),w=e.models.axis().scale(a).orient("bottom").tickPadding(5),E=e.models.axis().scale(h).orient("left"),S=e.models.axis().scale(p).orient("right"),x=e.models.legend().height(30),T=d3.dispatch("tooltipShow","tooltipHide"),N=function(t,n){var r=t.pos[0]+(n.offsetLeft||0),i=t.pos[1]+(n.offsetTop||0),s=w.tickFormat()(d.x()(t.point,t.pointIndex)),o=(t.series.yAxis==2?S:E).tickFormat()(d.y()(t.point,t.pointIndex)),a=u(t.series.key,s,o,t,C);e.tooltip.show([r,i],a,undefined,undefined,n.offsetParent)};return d.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),d.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),m.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),m.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),g.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),g.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),y.dispatch.on("tooltipShow",function(e){if(!Math.round(y.y()(e.point)*100))return setTimeout(function(){d3.selectAll(".point.hover").classed("hover",!1)},0),!1;e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),y.dispatch.on("tooltipHide",function(e){T.tooltipHide(e)}),b.dispatch.on("tooltipShow",function(e){if(!Math.round(b.y()(e.point)*100))return setTimeout(function(){d3.selectAll(".point.hover").classed("hover",!1)},0),!1;e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),b.dispatch.on("tooltipHide",function(e){T.tooltipHide(e)}),d.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),d.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){o&&e.tooltip.cleanup()}),C.dispatch=T,C.lines1=d,C.lines2=v,C.bars1=m,C.bars2=g,C.stack1=y,C.stack2=b,C.xAxis=w,C.yAxis1=E,C.yAxis2=S,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(getX=e,d.x(e),m.x(e),C):getX},C.y=function(e){return arguments.length?(getY=e,d.y(e),m.y(e),C):getY},C.yDomain1=function(e){return arguments.length?(l=e,C):l},C.yDomain2=function(e){return arguments.length?(c=e,C):c},C.margin=function(e){return arguments.length?(t=e,C):t},C.width=function(e){return arguments.length?(r=e,C):r},C.height=function(e){return arguments.length?(i=e,C):i},C.color=function(e){return arguments.length?(n=e,x.color(e),C):n},C.showLegend=function(e){return arguments.length?(s=e,C):s},C.tooltips=function(e){return arguments.length?(o=e,C):o},C.tooltipContent=function(e){return arguments.length?(u=e,C):u},C},e.models.ohlcBar=function(){function x(e){return e.each(function(e){var g=n-t.left-t.right,x=r-t.top-t.bottom,T=d3.select(this);s.domain(y||d3.extent(e[0].values.map(u).concat(p))),v?s.range(w||[g*.5/e[0].values.length,g*(e[0].values.length-.5)/e[0].values.length]):s.range(w||[0,g]),o.domain(b||[d3.min(e[0].values.map(h).concat(d)),d3.max(e[0].values.map(c).concat(d))]).range(E||[x,0]),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]-s.domain()[0]*.01,s.domain()[1]+s.domain()[1]*.01]):s.domain([-1,1])),o.domain()[0]===o.domain()[1]&&(o.domain()[0]?o.domain([o.domain()[0]+o.domain()[0]*.01,o.domain()[1]-o.domain()[1]*.01]):o.domain([-1,1]));var N=d3.select(this).selectAll("g.nv-wrap.nv-ohlcBar").data([e[0].values]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-ohlcBar"),k=C.append("defs"),L=C.append("g"),A=N.select("g");L.append("g").attr("class","nv-ticks"),N.attr("transform","translate("+t.left+","+t.top+")"),T.on("click",function(e,t){S.chartClick({data:e,index:t,pos:d3.event,id:i})}),k.append("clipPath").attr("id","nv-chart-clip-path-"+i).append("rect"),N.select("#nv-chart-clip-path-"+i+" rect").attr("width",g).attr("height",x),A.attr("clip-path",m?"url(#nv-chart-clip-path-"+i+")":"");var O=N.select(".nv-ticks").selectAll(".nv-tick").data(function(e){return e});O.exit().remove();var M=O.enter().append("path").attr("class",function(e,t,n){return(f(e,t)>l(e,t)?"nv-tick negative":"nv-tick positive")+" nv-tick-"+n+"-"+t}).attr("d",function(t,n){var r=g/e[0].values.length*.9;return"m0,0l0,"+(o(f(t,n))-o(c(t,n)))+"l"+ -r/2+",0l"+r/2+",0l0,"+(o(h(t,n))-o(f(t,n)))+"l0,"+(o(l(t,n))-o(h(t,n)))+"l"+r/2+",0l"+ -r/2+",0z"}).attr("transform",function(e,t){return"translate("+s(u(e,t))+","+o(c(e,t))+")"}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),S.elementMouseover({point:t,series:e[0],pos:[s(u(t,n)),o(a(t,n))],pointIndex:n,seriesIndex:0,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),S.elementMouseout({point:t,series:e[0],pointIndex:n,seriesIndex:0,e:d3.event})}).on("click",function(e,t){S.elementClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()}).on("dblclick",function(e,t){S.elementDblClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()});O.attr("class",function(e,t,n){return(f(e,t)>l(e,t)?"nv-tick negative":"nv-tick positive")+" nv-tick-"+n+"-"+t}),d3.transition(O).attr("transform",function(e,t){return"translate("+s(u(e,t))+","+o(c(e,t))+")"}).attr("d",function(t,n){var r=g/e[0].values.length*.9;return"m0,0l0,"+(o(f(t,n))-o(c(t,n)))+"l"+ -r/2+",0l"+r/2+",0l0,"+(o(h(t,n))-o(f(t,n)))+"l0,"+(o(l(t,n))-o(h(t,n)))+"l"+r/2+",0l"+ -r/2+",0z"})}),x}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=function(e){return e.open},l=function(e){return e.close},c=function(e){return e.high},h=function(e){return e.low},p=[],d=[],v=!1,m=!0,g=e.utils.defaultColor(),y,b,w,E,S=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout");return x.dispatch=S,x.options=e.utils.optionsFunc.bind(x),x.x=function(e){return arguments.length?(u=e,x):u},x.y=function(e){return arguments.length?(a=e,x):a},x.open=function(e){return arguments.length?(f=e,x):f},x.close=function(e){return arguments.length?(l=e,x):l},x.high=function(e){return arguments.length?(c=e,x):c},x.low=function(e){return arguments.length?(h=e,x):h},x.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,x):t},x.width=function(e){return arguments.length?(n=e,x):n},x.height=function(e){return arguments.length?(r=e,x):r},x.xScale=function(e){return arguments.length?(s=e,x):s},x.yScale=function(e){return arguments.length?(o=e,x):o},x.xDomain=function(e){return arguments.length?(y=e,x):y},x.yDomain=function(e){return arguments.length?(b=e,x):b},x.xRange=function(e){return arguments.length?(w=e,x):w},x.yRange=function(e){return arguments.length?(E=e,x):E},x.forceX=function(e){return arguments.length?(p=e,x):p},x.forceY=function(e){return arguments.length?(d=e,x):d},x.padData=function(e){return arguments.length?(v=e,x):v},x.clipEdge=function(e){return arguments.length?(m=e,x):m},x.color=function(t){return arguments.length?(g=e.utils.getColor(t),x):g},x.id=function(e){return arguments.length?(i=e,x):i},x},e.models.pie=function(){function S(e){return e.each(function(e){function q(e){var t=(e.startAngle+e.endAngle)*90/Math.PI-90;return t>90?t-180:t}function R(e){e.endAngle=isNaN(e.endAngle)?0:e.endAngle,e.startAngle=isNaN(e.startAngle)?0:e.startAngle,m||(e.innerRadius=0);var t=d3.interpolate(this._current,e);return this._current=t(0),function(e){return A(t(e))}}function U(e){e.innerRadius=0;var t=d3.interpolate({startAngle:0,endAngle:0},e);return function(e){return A(t(e))}}var o=n-t.left-t.right,f=r-t.top-t.bottom,S=Math.min(o,f)/2,x=S-S/5,T=d3.select(this),N=T.selectAll(".nv-wrap.nv-pie").data(e),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-pie nv-chart-"+u),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-pie"),k.append("g").attr("class","nv-pieLabels"),N.attr("transform","translate("+t.left+","+t.top+")"),L.select(".nv-pie").attr("transform","translate("+o/2+","+f/2+")"),L.select(".nv-pieLabels").attr("transform","translate("+o/2+","+f/2+")"),T.on("click",function(e,t){E.chartClick({data:e,index:t,pos:d3.event,id:u})});var A=d3.svg.arc().outerRadius(x);y&&A.startAngle(y),b&&A.endAngle(b),m&&A.innerRadius(S*w);var O=d3.layout.pie().sort(null).value(function(e){return e.disabled?0:s(e)}),M=N.select(".nv-pie").selectAll(".nv-slice").data(O),_=N.select(".nv-pieLabels").selectAll(".nv-label").data(O);M.exit().remove(),_.exit().remove();var D=M.enter().append("g").attr("class","nv-slice").on("mouseover",function(e,t){d3.select(this).classed("hover",!0),E.elementMouseover({label:i(e.data),value:s(e.data),point:e.data,pointIndex:t,pos:[d3.event.pageX,d3.event.pageY],id:u})}).on("mouseout",function(e,t){d3.select(this).classed("hover",!1),E.elementMouseout({label:i(e.data),value:s(e.data),point:e.data,index:t,id:u})}).on("click",function(e,t){E.elementClick({label:i(e.data),value:s(e.data),point:e.data,index:t,pos:d3.event,id:u}),d3.event.stopPropagation()}).on("dblclick",function(e,t){E.elementDblClick({label:i(e.data),value:s(e.data),point:e.data,index:t,pos:d3.event,id:u}),d3.event.stopPropagation()});M.attr("fill",function(e,t){return a(e,t)}).attr("stroke",function(e,t){return a(e,t)});var P=D.append("path").each(function(e){this._current=e});M.select("path").attr("d",A);if(l){var H=d3.svg.arc().innerRadius(0);c&&(H=A),h&&(H=d3.svg.arc().outerRadius(A.outerRadius())),_.enter().append("g").classed("nv-label",!0).each(function(e,t){var n=d3.select(this);n.attr("transform",function(e){if(g){e.outerRadius=x+10,e.innerRadius=x+15;var t=(e.startAngle+e.endAngle)/2*(180/Math.PI);return(e.startAngle+e.endAngle)/2v?r[p]:""})}}),S}var t={top:0,right:0,bottom:0,left:0},n=500,r=500,i=function(e){return e.x},s=function(e){return e.y},o=function(e){return e.description},u=Math.floor(Math.random()*1e4),a=e.utils.defaultColor(),f=d3.format(",.2f"),l=!0,c=!0,h=!1,p="key",v=.02,m=!1,g=!1,y=!1,b=!1,w=.5,E=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout");return S.dispatch=E,S.options=e.utils.optionsFunc.bind(S),S.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,S):t},S.width=function(e){return arguments.length?(n=e,S):n},S.height=function(e){return arguments.length?(r=e,S):r},S.values=function(t){return e.log("pie.values() is no longer supported."),S},S.x=function(e){return arguments.length?(i=e,S):i},S.y=function(e){return arguments.length?(s=d3.functor(e),S):s},S.description=function(e){return arguments.length?(o=e,S):o},S.showLabels=function(e){return arguments.length?(l=e,S):l},S.labelSunbeamLayout=function(e){return arguments.length?(g=e,S):g},S.donutLabelsOutside=function(e){return arguments.length?(h=e,S):h},S.pieLabelsOutside=function(e){return arguments.length?(c=e,S):c},S.labelType=function(e){return arguments.length?(p=e,p=p||"key",S):p},S.donut=function(e){return arguments.length?(m=e,S):m},S.donutRatio=function(e){return arguments.length?(w=e,S):w},S.startAngle=function(e){return arguments.length?(y=e,S):y},S.endAngle=function(e){return arguments.length?(b=e,S):b},S.id=function(e){return arguments.length?(u=e,S):u},S.color=function(t){return arguments.length?(a=e.utils.getColor(t),S):a},S.valueFormat=function(e){return arguments.length?(f=e,S):f},S.labelThreshold=function(e){return arguments.length?(v=e,S):v},S},e.models.pieChart=function(){function v(e){return e.each(function(e){var u=d3.select(this),a=this,f=(i||parseInt(u.style("width"))||960)-r.left-r.right,d=(s||parseInt(u.style("height"))||400)-r.top-r.bottom;v.update=function(){u.call(v)},v.container=this,l.disabled=e.map(function(e){return!!e.disabled});if(!c){var m;c={};for(m in l)l[m]instanceof Array?c[m]=l[m].slice(0):c[m]=l[m]}if(!e||!e.length){var g=u.selectAll(".nv-noData").data([h]);return g.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),g.attr("x",r.left+f/2).attr("y",r.top+d/2).text(function(e){return e}),v}u.selectAll(".nv-noData").remove();var y=u.selectAll("g.nv-wrap.nv-pieChart").data([e]),b=y.enter().append("g").attr("class","nvd3 nv-wrap nv-pieChart").append("g"),w=y.select("g");b.append("g").attr("class","nv-pieWrap"),b.append("g").attr("class","nv-legendWrap"),o&&(n.width(f).key(t.x()),y.select(".nv-legendWrap").datum(e).call(n),r.top!=n.height()&&(r.top=n.height(),d=(s||parseInt(u.style("height"))||400)-r.top-r.bottom),y.select(".nv-legendWrap").attr("transform","translate(0,"+ -r.top+")")),y.attr("transform","translate("+r.left+","+r.top+")"),t.width(f).height(d);var E=w.select(".nv-pieWrap").datum([e]);d3.transition(E).call(t),n.dispatch.on("stateChange",function(e){l=e,p.stateChange(l),v.update()}),t.dispatch.on("elementMouseout.tooltip",function(e){p.tooltipHide(e)}),p.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),l.disabled=t.disabled),v.update()})}),v}var t=e.models.pie(),n=e.models.legend(),r={top:30,right:20,bottom:20,left:20},i=null,s=null,o=!0,u=e.utils.defaultColor(),a=!0,f=function(e,t,n,r){return"

    "+e+"

    "+"

    "+t+"

    "},l={},c=null,h="No Data Available.",p=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),d=function(n,r){var i=t.description()(n.point)||t.x()(n.point),s=n.pos[0]+(r&&r.offsetLeft||0),o=n.pos[1]+(r&&r.offsetTop||0),u=t.valueFormat()(t.y()(n.point)),a=f(i,u,n,v);e.tooltip.show([s,o],a,n.value<0?"n":"s",null,r)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+r.left,e.pos[1]+r.top],p.tooltipShow(e)}),p.on("tooltipShow",function(e){a&&d(e)}),p.on("tooltipHide",function(){a&&e.tooltip.cleanup()}),v.legend=n,v.dispatch=p,v.pie=t,d3.rebind(v,t,"valueFormat","values","x","y","description","id","showLabels","donutLabelsOutside","pieLabelsOutside","labelType","donut","donutRatio","labelThreshold"),v.options=e.utils.optionsFunc.bind(v),v.margin=function(e){return arguments.length?(r.top=typeof e.top!="undefined"?e.top:r.top,r.right=typeof e.right!="undefined"?e.right:r.right,r.bottom=typeof e.bottom!="undefined"?e.bottom:r.bottom,r.left=typeof e.left!="undefined"?e.left:r.left,v):r},v.width=function(e){return arguments.length?(i=e,v):i},v.height=function(e){return arguments.length?(s=e,v):s},v.color=function(r){return arguments.length?(u=e.utils.getColor(r),n.color(u),t.color(u),v):u},v.showLegend=function(e){return arguments.length?(o=e,v):o},v.tooltips=function(e){return arguments.length?(a=e,v):a},v.tooltipContent=function(e){return arguments.length?(f=e,v):f},v.state=function(e){return arguments.length?(l=e,v):l},v.defaultState=function(e){return arguments.length?(c=e,v):c},v.noData=function(e){return arguments.length?(h=e,v):h},v},e.models.scatter=function(){function I(q){return q.each(function(I){function Q(){if(!g)return!1;var e,i=d3.merge(I.map(function(e,t){return e.values.map(function(e,n){var r=f(e,n),i=l(e,n);return[o(r),u(i),t,n,e]}).filter(function(e,t){return b(e[4],t)})}));if(D===!0){if(x){var a=X.select("defs").selectAll(".nv-point-clips").data([s]).enter();a.append("clipPath").attr("class","nv-point-clips").attr("id","nv-points-clip-"+s);var c=X.select("#nv-points-clip-"+s).selectAll("circle").data(i);c.enter().append("circle").attr("r",T),c.exit().remove(),c.attr("cx",function(e){return e[0]}).attr("cy",function(e){return e[1]}),X.select(".nv-point-paths").attr("clip-path","url(#nv-points-clip-"+s+")")}i.length&&(i.push([o.range()[0]-20,u.range()[0]-20,null,null]),i.push([o.range()[1]+20,u.range()[1]+20,null,null]),i.push([o.range()[0]-20,u.range()[0]+20,null,null]),i.push([o.range()[1]+20,u.range()[1]-20,null,null]));var h=d3.geom.polygon([[-10,-10],[-10,r+10],[n+10,r+10],[n+10,-10]]),p=1e-6;i=i.sort(function(e,t){return e[0]-t[0]||e[1]-t[1]});for(var d=0;d0?R:0),K.attr("clip-path",S?"url(#nv-edge-clip-"+s+")":""),F=!0;var G=X.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});G.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),G.exit().remove(),G.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}),G.style("fill",function(e,t){return i(e,t)}).style("stroke",function(e,t){return i(e,t)}).style("stroke-opacity",1).style("fill-opacity",.5);if(p){var Y=G.selectAll("circle.nv-point").data(function(e){return e.values},y);Y.enter().append("circle").style("fill",function(e,t){return e.color}).style("stroke",function(e,t){return e.color}).attr("cx",function(t,n){return e.utils.NaNtoZero(P(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(H(l(t,n)))}).attr("r",function(e,t){return Math.sqrt(a(c(e,t))/Math.PI)}),Y.exit().remove(),G.exit().selectAll("path.nv-point").attr("cx",function(t,n){return e.utils.NaNtoZero(o(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(u(l(t,n)))}).remove(),Y.each(function(e,t){d3.select(this).classed("nv-point",!0).classed("nv-point-"+t,!0).classed("hover",!1)}),Y.attr("cx",function(t,n){return e.utils.NaNtoZero(o(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(u(l(t,n)))}).attr("r",function(e,t){return Math.sqrt(a(c(e,t))/Math.PI)})}else{var Y=G.selectAll("path.nv-point").data(function(e){return e.values});Y.enter().append("path").style("fill",function(e,t){return e.color}).style("stroke",function(e,t){return e.color}).attr("transform",function(e,t){return"translate("+P(f(e,t))+","+H(l(e,t))+")"}).attr("d",d3.svg.symbol().type(h).size(function(e,t){return a(c(e,t))})),Y.exit().remove(),G.exit().selectAll("path.nv-point").attr("transform",function(e,t){return"translate("+o(f(e,t))+","+u(l(e,t))+")"}).remove(),Y.each(function(e,t){d3.select(this).classed("nv-point",!0).classed("nv-point-"+t,!0).classed("hover",!1)}),Y.attr("transform",function(e,t){return"translate("+o(f(e,t))+","+u(l(e,t))+")"}).attr("d",d3.svg.symbol().type(h).size(function(e,t){return a(c(e,t))}))}clearTimeout(j),j=setTimeout(Q,300),P=o.copy(),H=u.copy(),B=a.copy()}),I}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=e.utils.defaultColor(),s=Math.floor(Math.random()*1e5),o=d3.scale.linear(),u=d3.scale.linear(),a=d3.scale.linear(),f=function(e){return e.x},l=function(e){return e.y},c=function(e){return e.size||1},h=function(e){return e.shape||"circle"},p=!0,d=[],v=[],m=[],g=!0,y=null,b=function(e){return!e.notActive},w=!1,E=.1,S=!1,x=!0,T=function(){return 25},N=null,C=null,k=null,L=null,A=null,O=null,M=!1,_=d3.dispatch("elementClick","elementMouseover","elementMouseout"),D=!0,P,H,B,j,F=!1;return I.clearHighlights=function(){d3.selectAll(".nv-chart-"+s+" .nv-point.hover").classed("hover",!1)},I.highlightPoint=function(e,t,n){d3.select(".nv-chart-"+s+" .nv-series-"+e+" .nv-point-"+t).classed("hover",n)},_.on("elementMouseover.point",function(e){g&&I.highlightPoint(e.seriesIndex,e.pointIndex,!0)}),_.on("elementMouseout.point",function(e){g&&I.highlightPoint(e.seriesIndex,e.pointIndex,!1)}),I.dispatch=_,I.options=e.utils.optionsFunc.bind(I),I.x=function(e){return arguments.length?(f=d3.functor(e),I):f},I.y=function(e){return arguments.length?(l=d3.functor(e),I):l},I.size=function(e){return arguments.length?(c=d3.functor(e),I):c},I.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,I):t},I.width=function(e){return arguments.length?(n=e,I):n},I.height=function(e){return arguments.length?(r=e,I):r},I.xScale=function(e){return arguments.length?(o=e,I):o},I.yScale=function(e){return arguments.length?(u=e,I):u},I.zScale=function(e){return arguments.length?(a=e,I):a},I.xDomain=function(e){return arguments.length?(N=e,I):N},I.yDomain=function(e){return arguments.length?(C=e,I):C},I.sizeDomain=function(e){return arguments.length?(A=e,I):A},I.xRange=function(e){return arguments.length?(k=e,I):k},I.yRange=function(e){return arguments.length?(L=e,I):L},I.sizeRange=function(e){return arguments.length?(O=e,I):O},I.forceX=function(e){return arguments.length?(d=e,I):d},I.forceY=function(e){return arguments.length?(v=e,I):v},I.forceSize=function(e){return arguments.length?(m=e,I):m},I.interactive=function(e){return arguments.length?(g=e,I):g},I.pointKey=function(e){return arguments.length?(y=e,I):y},I.pointActive=function(e){return arguments.length?(b=e,I):b},I.padData=function(e){return arguments.length?(w=e,I):w},I.padDataOuter=function(e){return arguments.length?(E=e,I):E},I.clipEdge=function(e){return arguments.length?(S=e,I):S},I.clipVoronoi=function(e){return arguments.length?(x=e,I):x},I.useVoronoi=function(e){return arguments.length?(D=e,D===!1&&(x=!1),I):D},I.clipRadius=function(e){return arguments.length?(T=e,I):T},I.color=function(t){return arguments.length?(i=e.utils.getColor(t),I):i},I.shape=function(e){return arguments.length?(h=e,I):h},I.onlyCircles=function(e){return arguments.length?(p=e,I):p},I.id=function(e){return arguments.length?(s=e,I):s},I.singlePoint=function(e){return arguments.length?(M=e,I):M},I},e.models.scatterChart=function(){function F(e){return e.each(function(e){function J(){if(T)return W.select(".nv-point-paths").style("pointer-events","all"),!1;W.select(".nv-point-paths").style("pointer-events","none");var i=d3.mouse(this);h.distortion(x).focus(i[0]),p.distortion(x).focus(i[1]),W.select(".nv-scatterWrap").call(t),b&&W.select(".nv-x.nv-axis").call(n),w&&W.select(".nv-y.nv-axis").call(r),W.select(".nv-distributionX").datum(e.filter(function(e){return!e.disabled})).call(o),W.select(".nv-distributionY").datum(e.filter(function(e){return!e.disabled})).call(u)}var C=d3.select(this),k=this,L=(f||parseInt(C.style("width"))||960)-a.left-a.right,D=(l||parseInt(C.style("height"))||400)-a.top-a.bottom;F.update=function(){C.call(F)},F.container=this,A.disabled=e.map(function(e){return!!e.disabled});if(!O){var I;O={};for(I in A)A[I]instanceof Array?O[I]=A[I].slice(0):O[I]=A[I]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var q=C.selectAll(".nv-noData").data([_]);return q.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),q.attr("x",a.left+L/2).attr("y",a.top+D/2).text(function(e){return e}),F}C.selectAll(".nv-noData").remove(),P=P||h,H=H||p;var R=C.selectAll("g.nv-wrap.nv-scatterChart").data([e]),U=R.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),z=U.append("g"),W=R.select("g");z.append("rect").attr("class","nvd3 nv-background"),z.append("g").attr("class","nv-x nv-axis"),z.append("g").attr("class","nv-y nv-axis"),z.append("g").attr("class","nv-scatterWrap"),z.append("g").attr("class","nv-distWrap"),z.append("g").attr("class","nv-legendWrap"),z.append("g").attr("class","nv-controlsWrap");if(y){var X=S?L/2:L;i.width(X),R.select(".nv-legendWrap").datum(e).call(i),a.top!=i.height()&&(a.top=i.height(),D=(l||parseInt(C.style("height"))||400)-a.top-a.bottom),R.select(".nv-legendWrap").attr("transform","translate("+(L-X)+","+ -a.top+")")}S&&(s.width(180).color(["#444"]),W.select(".nv-controlsWrap").datum(j).attr("transform","translate(0,"+ -a.top+")").call(s)),R.attr("transform","translate("+a.left+","+a.top+")"),E&&W.select(".nv-y.nv-axis").attr("transform","translate("+L+",0)"),t.width(L).height(D).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),d!==0&&t.xDomain(null),v!==0&&t.yDomain(null),R.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t);if(d!==0){var V=h.domain()[1]-h.domain()[0];t.xDomain([h.domain()[0]-d*V,h.domain()[1]+d*V])}if(v!==0){var $=p.domain()[1]-p.domain()[0];t.yDomain([p.domain()[0]-v*$,p.domain()[1]+v*$])}(v!==0||d!==0)&&R.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),b&&(n.scale(h).ticks(n.ticks()&&n.ticks().length?n.ticks():L/100).tickSize(-D,0),W.select(".nv-x.nv-axis").attr("transform","translate(0,"+p.range()[0]+")").call(n)),w&&(r.scale(p).ticks(r.ticks()&&r.ticks().length?r.ticks():D/36).tickSize(-L,0),W.select(".nv-y.nv-axis").call(r)),m&&(o.getData(t.x()).scale(h).width(L).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),z.select(".nv-distWrap").append("g").attr("class","nv-distributionX"),W.select(".nv-distributionX").attr("transform","translate(0,"+p.range()[0]+")").datum(e.filter(function(e){return!e.disabled})).call(o)),g&&(u.getData(t.y()).scale(p).width(D).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),z.select(".nv-distWrap").append("g").attr("class","nv-distributionY"),W.select(".nv-distributionY").attr("transform","translate("+(E?L:-u.size())+",0)").datum(e.filter(function(e){return!e.disabled})).call(u)),d3.fisheye&&(W.select(".nv-background").attr("width",L).attr("height",D),W.select(".nv-background").on("mousemove",J),W.select(".nv-background").on("click",function(){T=!T}),t.dispatch.on("elementClick.freezeFisheye",function(){T=!T})),s.dispatch.on("legendClick",function(e,i){e.disabled=!e.disabled,x=e.disabled?0:2.5,W.select(".nv-background").style("pointer-events",e.disabled?"none":"all"),W.select(".nv-point-paths").style("pointer-events",e.disabled?"all":"none"),e.disabled?(h.distortion(x).focus(0),p.distortion(x).focus(0),W.select(".nv-scatterWrap").call(t),W.select(".nv-x.nv-axis").call(n),W.select(".nv-y.nv-axis").call(r)):T=!1,F.update()}),i.dispatch.on("stateChange",function(e){A.disabled=e.disabled,M.stateChange(A),F.update()}),t.dispatch.on("elementMouseover.tooltip",function(e){d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",function(t,n){return e.pos[1]-D}),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",e.pos[0]+o.size()),e.pos=[e.pos[0]+a.left,e.pos[1]+a.top],M.tooltipShow(e)}),M.on("tooltipShow",function(e){N&&B(e,k.parentNode)}),M.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),A.disabled=t.disabled),F.update()}),P=h.copy(),H=p.copy()}),F}var t=e.models.scatter(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.models.distribution(),u=e.models.distribution(),a={top:30,right:20,bottom:50,left:75},f=null,l=null,c=e.utils.defaultColor(),h=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.xScale(),p=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.yScale(),d=0,v=0,m=!1,g=!1,y=!0,b=!0,w=!0,E=!1,S=!!d3.fisheye,x=0,T=!1,N=!0,C=function(e,t,n){return""+t+""},k=function(e,t,n){return""+n+""},L=null,A={},O=null,M=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),_="No Data Available.",D=0;t.xScale(h).yScale(p),n.orient("bottom").tickPadding(10),r.orient(E?"right":"left").tickPadding(10),o.axis("x"),u.axis("y"),s.updateState(!1);var P,H,B=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));C!=null&&e.tooltip.show([f,l],C(i.series.key,v,m,i,F),"n",1,s,"x-nvtooltip"),k!=null&&e.tooltip.show([c,d],k(i.series.key,v,m,i,F),"e",1,s,"y-nvtooltip"),L!=null&&e.tooltip.show([o,u],L(i.series.key,v,m,i,F),i.value<0?"n":"s",null,s)},j=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){M.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",u.size())}),M.on("tooltipHide",function(){N&&e.tooltip.cleanup()}),F.dispatch=M,F.scatter=t,F.legend=i,F.controls=s,F.xAxis=n,F.yAxis=r,F.distX=o,F.distY=u,d3.rebind(F,t,"id","interactive","pointActive","x","y","shape","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","sizeRange","forceX","forceY","forceSize","clipVoronoi","clipRadius","useVoronoi"),F.options=e.utils.optionsFunc.bind(F),F.margin=function(e){return arguments.length?(a.top=typeof e.top!="undefined"?e.top:a.top,a.right=typeof e.right!="undefined"?e.right:a.right,a.bottom=typeof e.bottom!="undefined"?e.bottom:a.bottom,a.left=typeof e.left!="undefined"?e.left:a.left,F):a},F.width=function(e){return arguments.length?(f=e,F):f},F.height=function(e){return arguments.length?(l=e,F):l},F.color=function(t){return arguments.length?(c=e.utils.getColor(t),i.color(c),o.color(c),u.color(c),F):c},F.showDistX=function(e){return arguments.length?(m=e,F):m},F.showDistY=function(e){return arguments.length?(g=e,F):g},F.showControls=function(e){return arguments.length?(S=e,F):S},F.showLegend=function(e){return arguments.length?(y=e,F):y},F.showXAxis=function(e){return arguments.length?(b=e,F):b},F.showYAxis=function(e){return arguments.length?(w=e,F):w},F.rightAlignYAxis=function(e){return arguments.length?(E=e,r.orient(e?"right":"left"),F):E},F.fisheye=function(e){return arguments.length?(x=e,F):x},F.xPadding=function(e){return arguments.length?(d=e,F):d},F.yPadding=function(e){return arguments.length?(v=e,F):v},F.tooltips=function(e){return arguments.length?(N=e,F):N},F.tooltipContent=function(e){return arguments.length?(L=e,F):L},F.tooltipXContent=function(e){return arguments.length?(C=e,F):C},F.tooltipYContent=function(e){return arguments.length?(k=e,F):k},F.state=function(e){return arguments.length?(A=e,F):A},F.defaultState=function(e){return arguments.length?(O=e,F):O},F.noData=function(e){return arguments.length?(_=e,F):_},F.transitionDuration=function(e){return arguments.length?(D=e,F):D},F},e.models.scatterPlusLineChart=function(){function B(e){return e.each(function(e){function V(){if(S)return U.select(".nv-point-paths").style("pointer-events","all"),!1;U.select(".nv-point-paths").style("pointer-events","none");var i=d3.mouse(this);h.distortion(E).focus(i[0]),p.distortion(E).focus(i[1]),U.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),g&&U.select(".nv-x.nv-axis").call(n),y&&U.select(".nv-y.nv-axis").call(r),U.select(".nv-distributionX").datum(e.filter(function(e){return!e.disabled})).call(o),U.select(".nv-distributionY").datum(e.filter(function(e){return!e.disabled})).call(u)}var T=d3.select(this),N=this,C=(f||parseInt(T.style("width"))||960)-a.left-a.right,M=(l||parseInt(T.style("height"))||400)-a.top-a.bottom;B.update=function(){T.call(B)},B.container=this,k.disabled=e.map(function(e){return!!e.disabled});if(!L){var j;L={};for(j in k)k[j]instanceof Array?L[j]=k[j].slice(0):L[j]=k[j]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var F=T.selectAll(".nv-noData").data([O]);return F.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),F.attr("x",a.left+C/2).attr("y",a.top+M/2).text(function(e){return e}),B}T.selectAll(".nv-noData").remove(),h=t.xScale(),p=t.yScale(),_=_||h,D=D||p;var I=T.selectAll("g.nv-wrap.nv-scatterChart").data([e]),q=I.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),R=q.append("g"),U=I.select("g");R.append("rect").attr("class","nvd3 nv-background").style("pointer-events","none"),R.append("g").attr("class","nv-x nv-axis"),R.append("g").attr("class","nv-y nv-axis"),R.append("g").attr("class","nv-scatterWrap"),R.append("g").attr("class","nv-regressionLinesWrap"),R.append("g").attr("class","nv-distWrap"),R.append("g").attr("class","nv-legendWrap"),R.append("g").attr("class","nv-controlsWrap"),I.attr("transform","translate("+a.left+","+a.top+")"),b&&U.select(".nv-y.nv-axis").attr("transform","translate("+C+",0)"),m&&(i.width(C/2),I.select(".nv-legendWrap").datum(e).call(i),a.top!=i.height()&&(a.top=i.height(),M=(l||parseInt(T.style("height"))||400)-a.top-a.bottom),I.select(".nv-legendWrap").attr("transform","translate("+C/2+","+ -a.top+")")),w&&(s.width(180).color(["#444"]),U.select(".nv-controlsWrap").datum(H).attr("transform","translate(0,"+ -a.top+")").call(s)),t.width(C).height(M).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),I.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),I.select(".nv-regressionLinesWrap").attr("clip-path","url(#nv-edge-clip-"+t.id()+")");var z=I.select(".nv-regressionLinesWrap").selectAll(".nv-regLines").data(function(e){return e});z.enter().append("g").attr("class","nv-regLines");var W=z.selectAll(".nv-regLine").data(function(e){return[e]}),X=W.enter().append("line").attr("class","nv-regLine").style("stroke-opacity",0);W.attr("x1",h.range()[0]).attr("x2",h.range()[1]).attr("y1",function(e,t){return p(h.domain()[0]*e.slope+e.intercept)}).attr("y2",function(e,t){return p(h.domain()[1]*e.slope+e.intercept)}).style("stroke",function(e,t,n){return c(e,n)}).style("stroke-opacity",function(e,t){return e.disabled||typeof e.slope=="undefined"||typeof e.intercept=="undefined"?0:1}),g&&(n.scale(h).ticks(n.ticks()?n.ticks():C/100).tickSize(-M,0),U.select(".nv-x.nv-axis").attr("transform","translate(0,"+p.range()[0]+")").call(n)),y&&(r.scale(p).ticks(r.ticks()?r.ticks():M/36).tickSize(-C,0),U.select(".nv-y.nv-axis").call(r)),d&&(o.getData(t.x()).scale(h).width(C).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),R.select(".nv-distWrap").append("g").attr("class","nv-distributionX"),U.select(".nv-distributionX").attr("transform","translate(0,"+p.range()[0]+")").datum(e.filter(function(e){return!e.disabled})).call(o)),v&&(u.getData(t.y()).scale(p).width(M).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),R.select(".nv-distWrap").append("g").attr("class","nv-distributionY"),U.select(".nv-distributionY").attr("transform","translate("+(b?C:-u.size())+",0)").datum(e.filter(function(e){return!e.disabled})).call(u)),d3.fisheye&&(U.select(".nv-background").attr("width",C).attr("height",M),U.select(".nv-background").on("mousemove",V),U.select(".nv-background").on("click",function(){S=!S}),t.dispatch.on("elementClick.freezeFisheye",function(){S=!S})),s.dispatch.on("legendClick",function(e,i){e.disabled=!e.disabled,E=e.disabled?0:2.5,U.select(".nv-background").style("pointer-events",e.disabled?"none":"all"),U.select(".nv-point-paths").style("pointer-events",e.disabled?"all":"none"),e.disabled?(h.distortion(E).focus(0),p.distortion(E).focus(0),U.select(".nv-scatterWrap").call(t),U.select(".nv-x.nv-axis").call(n),U.select(".nv-y.nv-axis").call(r)):S=!1,B.update()}),i.dispatch.on("stateChange",function(e){k=e,A.stateChange(k),B.update()}),t.dispatch.on("elementMouseover.tooltip",function(e){d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",e.pos[1]-M),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",e.pos[0]+o.size()),e.pos=[e.pos[0]+a.left,e.pos[1]+a.top],A.tooltipShow(e)}),A.on("tooltipShow",function(e){x&&P(e,N.parentNode)}),A.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),k.disabled=t.disabled),B.update()}),_=h.copy(),D=p.copy()}),B}var t=e.models.scatter(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.models.distribution(),u=e.models.distribution(),a={top:30,right:20,bottom:50,left:75},f=null,l=null,c=e.utils.defaultColor(),h=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.xScale(),p=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.yScale(),d=!1,v=!1,m=!0,g=!0,y=!0,b=!1,w=!!d3.fisheye,E=0,S=!1,x=!0,T=function(e,t,n){return""+t+""},N=function(e,t,n){return""+n+""},C=function(e,t,n,r){return"

    "+e+"

    "+"

    "+r+"

    "},k={},L=null,A=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),O="No Data Available.",M=0;t.xScale(h).yScale(p),n.orient("bottom").tickPadding(10),r.orient(b?"right":"left").tickPadding(10),o.axis("x"),u.axis("y"),s.updateState(!1);var _,D,P=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));T!=null&&e.tooltip.show([f,l],T(i.series.key,v,m,i,B),"n",1,s,"x-nvtooltip"),N!=null&&e.tooltip.show([c,d],N(i.series.key,v,m,i,B),"e",1,s,"y-nvtooltip"),C!=null&&e.tooltip.show([o,u],C(i.series.key,v,m,i.point.tooltip,i,B),i.value<0?"n":"s",null,s)},H=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){A.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",u.size())}),A.on("tooltipHide",function(){x&&e.tooltip.cleanup()}),B.dispatch=A,B.scatter=t,B.legend=i,B.controls=s,B.xAxis=n,B.yAxis=r,B.distX=o,B.distY=u,d3.rebind(B,t,"id","interactive","pointActive","x","y","shape","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","sizeRange","forceX","forceY","forceSize","clipVoronoi","clipRadius","useVoronoi"),B.options=e.utils.optionsFunc.bind(B),B.margin=function(e){return arguments.length?(a.top=typeof e.top!="undefined"?e.top:a.top,a.right=typeof e.right!="undefined"?e.right:a.right,a.bottom=typeof e.bottom!="undefined"?e.bottom:a.bottom,a.left=typeof e.left!="undefined"?e.left:a.left,B):a},B.width=function(e){return arguments.length?(f=e,B):f},B.height=function(e){return arguments.length?(l=e,B):l},B.color=function(t){return arguments.length?(c=e.utils.getColor(t),i.color(c),o.color(c),u.color(c),B):c},B.showDistX=function(e){return arguments.length?(d=e,B):d},B.showDistY=function(e){return arguments.length?(v=e,B):v},B.showControls=function(e){return arguments.length?(w=e,B):w},B.showLegend=function(e){return arguments.length?(m=e,B):m},B.showXAxis=function(e){return arguments.length?(g=e,B):g},B.showYAxis=function(e){return arguments.length?(y=e,B):y},B.rightAlignYAxis=function(e){return arguments.length?(b=e,r.orient(e?"right":"left"),B):b},B.fisheye=function(e){return arguments.length?(E=e,B):E},B.tooltips=function(e){return arguments.length?(x=e,B):x},B.tooltipContent=function(e){return arguments.length?(C=e,B):C},B.tooltipXContent=function(e){return arguments.length?(T=e,B):T},B.tooltipYContent=function(e){return arguments.length?(N=e,B):N},B.state=function(e){return arguments.length?(k=e,B):k},B.defaultState=function(e){return arguments.length?(L=e,B):L},B.noData=function(e){return arguments.length?(O=e,B):O},B.transitionDuration=function(e){return arguments.length?(M=e,B):M},B},e.models.sparkline=function(){function d(e){return e.each(function(e){var i=n-t.left-t.right,d=r-t.top-t.bottom,v=d3.select(this);s.domain(l||d3.extent(e,u)).range(h||[0,i]),o.domain(c||d3.extent(e,a)).range(p||[d,0]);var m=v.selectAll("g.nv-wrap.nv-sparkline").data([e]),g=m.enter().append("g").attr("class","nvd3 nv-wrap nv-sparkline"),b=g.append("g"),w=m.select("g");m.attr("transform","translate("+t.left+","+t.top+")");var E=m.selectAll("path").data(function(e){return[e]});E.enter().append("path"),E.exit().remove(),E.style("stroke",function(e,t){return e.color||f(e,t)}).attr("d",d3.svg.line().x(function(e,t){return s(u(e,t))}).y(function(e,t){return o(a(e,t))}));var S=m.selectAll("circle.nv-point").data(function(e){function n(t){if(t!=-1){var n=e[t];return n.pointIndex=t,n}return null}var t=e.map(function(e,t){return a(e,t)}),r=n(t.lastIndexOf(o.domain()[1])),i=n(t.indexOf(o.domain()[0])),s=n(t.length-1);return[i,r,s].filter(function(e){return e!=null})});S.enter().append("circle"),S.exit().remove(),S.attr("cx",function(e,t){return s(u(e,e.pointIndex))}).attr("cy",function(e,t){return o(a(e,e.pointIndex))}).attr("r",2).attr("class",function(e,t){return u(e,e.pointIndex)==s.domain()[1]?"nv-point nv-currentValue":a(e,e.pointIndex)==o.domain()[0]?"nv-point nv-minValue":"nv-point nv-maxValue"})}),d}var t={top:2,right:0,bottom:2,left:0},n=400,r=32,i=!0,s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=e.utils.getColor(["#000"]),l,c,h,p;return d.options=e.utils.optionsFunc.bind(d),d.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,d):t},d.width=function(e){return arguments.length?(n=e,d):n},d.height=function(e){return arguments.length?(r=e,d):r},d.x=function(e){return arguments.length?(u=d3.functor(e),d):u},d.y=function(e){return arguments.length?(a=d3.functor(e),d):a},d.xScale=function(e){return arguments.length?(s=e,d):s},d.yScale=function(e){return arguments.length?(o=e,d):o},d.xDomain=function(e){return arguments.length?(l=e,d):l},d.yDomain=function(e){return arguments.length?(c=e,d):c},d.xRange=function(e){return arguments.length?(h=e,d):h},d.yRange=function(e){return arguments.length?(p=e,d):p},d.animate=function(e){return arguments.length?(i=e,d):i},d.color=function(t){return arguments.length?(f=e.utils.getColor(t),d):f},d},e.models.sparklinePlus=function(){function v(e){return e.each(function(c){function O(){if(a)return;var e=C.selectAll(".nv-hoverValue").data(u),r=e.enter().append("g").attr("class","nv-hoverValue").style("stroke-opacity",0).style("fill-opacity",0);e.exit().style("stroke-opacity",0).style("fill-opacity",0).remove(),e.attr("transform",function(e){return"translate("+s(t.x()(c[e],e))+",0)"}).style("stroke-opacity",1).style("fill-opacity",1);if(!u.length)return;r.append("line").attr("x1",0).attr("y1",-n.top).attr("x2",0).attr("y2",b),r.append("text").attr("class","nv-xValue").attr("x",-6).attr("y",-n.top).attr("text-anchor","end").attr("dy",".9em"),C.select(".nv-hoverValue .nv-xValue").text(f(t.x()(c[u[0]],u[0]))),r.append("text").attr("class","nv-yValue").attr("x",6).attr("y",-n.top).attr("text-anchor","start").attr("dy",".9em"),C.select(".nv-hoverValue .nv-yValue").text(l(t.y()(c[u[0]],u[0])))}function M(){function r(e,n){var r=Math.abs(t.x()(e[0],0)-n),i=0;for(var s=0;s2){var h=M.yScale().invert(i.mouseY),p=Infinity,d=null;c.forEach(function(e,t){h=Math.abs(h);var n=Math.abs(e.stackedValue.y0),r=Math.abs(e.stackedValue.y);if(h>=n&&h<=r+n){d=t;return}}),d!=null&&(c[d].highlight=!0)}var v=n.tickFormat()(M.x()(s,a)),m=t.style()=="expand"?function(e,t){return d3.format(".1%")(e)}:function(e,t){return r.tickFormat()(e)};o.tooltip.position({left:f+u.left,top:i.mouseY+u.top}).chartContainer(_.parentNode).enabled(g).valueFormatter(m).data({value:v,series:c})(),o.renderGuideLine(f)}),o.dispatch.on("elementMouseout",function(e){N.tooltipHide(),t.clearHighlights()}),N.on("tooltipShow",function(e){g&&O(e,_.parentNode)}),N.on("changeState",function(e){typeof e.disabled!="undefined"&&y.length===e.disabled.length&&(y.forEach(function(t,n){t.disabled=e.disabled[n]}),S.disabled=e.disabled),typeof e.style!="undefined"&&t.style(e.style),M.update()})}),M}var t=e.models.stackedArea(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.interactiveGuideline(),u={top:30,right:25,bottom:50,left:60},a=null,f=null,l=e.utils.defaultColor(),c=!0,h=!0,p=!0,d=!0,v=!1,m=!1,g=!0,y=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" on "+t+"

    "},b,w,E=d3.format(",.2f"),S={style:t.style()},x=null,T="No Data Available.",N=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),C=250,k=["Stacked","Stream","Expanded"],L={},A=0;n.orient("bottom").tickPadding(7),r.orient(v?"right":"left"),s.updateState(!1);var O=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=y(i.series.key,a,f,i,M);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("tooltipShow",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],N.tooltipShow(e)}),t.dispatch.on("tooltipHide",function(e){N.tooltipHide(e)}),N.on("tooltipHide",function(){g&&e.tooltip.cleanup()}),M.dispatch=N,M.stacked=t,M.legend=i,M.controls=s,M.xAxis=n,M.yAxis=r,M.interactiveLayer=o,d3.rebind(M,t,"x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","sizeDomain","interactive","useVoronoi","offset","order","style","clipEdge","forceX","forceY","forceSize","interpolate"),M.options=e.utils.optionsFunc.bind(M),M.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,M):u},M.width=function(e){return arguments.length?(a=e,M):a},M.height=function(e){return arguments.length?(f=e,M):f},M.color=function(n){return arguments.length?(l=e.utils.getColor(n),i.color(l),t.color(l),M):l},M.showControls=function(e){return arguments.length?(c=e,M):c},M.showLegend=function(e){return arguments.length?(h=e,M):h},M.showXAxis=function(e){return arguments.length?(p=e,M):p},M.showYAxis=function(e){return arguments.length?(d=e,M):d},M.rightAlignYAxis=function(e){return arguments.length?(v=e,r.orient(e?"right":"left"),M):v},M.useInteractiveGuideline=function(e){return arguments.length?(m=e,e===!0&&(M.interactive(!1),M.useVoronoi(!1)),M):m},M.tooltip=function(e){return arguments.length?(y=e,M):y},M.tooltips=function(e){return arguments.length?(g=e,M):g},M.tooltipContent=function(e){return arguments.length?(y=e,M):y},M.state=function(e){return arguments.length?(S=e,M):S},M.defaultState=function(e){return arguments.length?(x=e,M):x},M.noData=function(e){return arguments.length?(T=e,M):T},M.transitionDuration=function(e){return arguments.length?(A=e,M):A},M.controlsData=function(e){return arguments.length?(k=e,M):k},M.controlLabels=function(e){return arguments.length?typeof e!="object"?L:(L=e,M):L},r.setTickFormat=r.tickFormat,r.tickFormat=function(e){return arguments.length?(E=e,r):E},M}}(),define("plugin/plugins/nvd3/nv.d3",function(){}),define("plugin/charts/nvd3/common/config",["plugin/charts/forms/default","plugin/plugins/nvd3/nv.d3"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"NVD3",tag:"svg",keywords:"small",query_limit:500})}),define("plugin/charts/nvd3/bar/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_stacked/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stacked",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_horizontal/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Horizontal",category:"Bar diagrams",settings:{x_axis_type:{init:"hide"}},columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_horizontal_stacked/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stacked horizontal",category:"Bar diagrams",settings:{x_axis_type:{init:"hide"}},columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/line_focus/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line with focus",category:"Others",zoomable:"native",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/pie/config",["plugin/plugins/nvd3/nv.d3"],function(){return $.extend(!0,{},{title:"Pie chart",category:"Area charts",library:"NVD3",tag:"svg",keywords:"small",columns:{label:{title:"Labels",is_label:!0,is_auto:!0},y:{title:"Values",is_numeric:!0}},settings:{main_separator:{type:"separator",title:"Pie chart settings"},donut_ratio:{title:"Donut ratio",info:"Determine how large the donut hole will be.",type:"select",init:"0.5",data:[{label:"50%",value:"0.5"},{label:"25%",value:"0.25"},{label:"10%",value:"0.10"},{label:"0%",value:"0"}]},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},label_separator:{type:"separator",title:"Label settings"},label_type:{title:"Donut label",info:"What would you like to show for each slice?",type:"select",init:"percent",data:[{label:"-- Nothing --",value:"hide",hide:"label_outside"},{label:"Label column",value:"key",show:"label_outside"},{label:"Value column",value:"value",show:"label_outside"},{label:"Percentage",value:"percent",show:"label_outside"}]},label_outside:{title:"Show outside",info:"Would you like to show labels outside the donut?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{init:"true",hide:!0}}})}),define("plugin/charts/nvd3/stackedarea_full/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Expanded",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea_stream/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stream",category:"Area charts",zoomable:!0,keywords:"default small",showmaxmin:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/histogram/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogram",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{x_axis_label:{init:"Values"},y_axis_label:{init:"Density"},y_axis_type:{init:"f"},y_axis_precision:{init:".2"}}})}),define("plugin/charts/nvd3/line/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/scatter/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/common/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"jqPlot",tag:"div",zoomable:!0,keywords:"medium",query_limit:1e4,settings:{separator_grid:{title:"Grids",type:"separator"},x_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the X axis?",type:"radiobutton",init:"false",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]},y_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the Y axis?",type:"radiobutton",init:"true",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]}}})}),define("plugin/charts/jqplot/bar/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/line/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/scatter/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}},settings:{x_axis_grid:{init:"true"}}})}),define("plugin/charts/jqplot/boxplot/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Box plot",category:"Data processing (requires 'charts' tool from Toolshed)",library:"jqPlot",tag:"div",execute:"boxplot",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{show_legend:{init:"false"}}})}),define("plugin/charts/jqplot/histogram_discrete/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Discrete Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogramdiscrete",keywords:"small medium large",columns:{x:{title:"Observations",is_label:!0}},settings:{x_axis_label:{init:"Breaks"},y_axis_label:{init:"Density"}}})}),define("plugin/charts/others/heatmap/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"Heatmap",category:"Others",query_limit:1e3,library:"Custom",tag:"svg",keywords:"small",zoomable:!0,columns:{x:{title:"Column labels",is_label:!0,is_numeric:!0,is_unique:!0},y:{title:"Row labels",is_label:!0,is_numeric:!0,is_unique:!0},z:{title:"Observation",is_numeric:!0}},settings:{use_panels:{init:"true",hide:!0},color_set:{title:"Color scheme",info:"Select a color scheme for your heatmap",type:"select",init:"jet",data:[{label:"Cold-to-Hot",value:"hot"},{label:"Cool",value:"cool"},{label:"Copper",value:"copper"},{label:"Gray scale",value:"gray"},{label:"Jet",value:"jet"},{label:"No-Green",value:"no_green"},{label:"Ocean",value:"ocean"},{label:"Polar",value:"polar"},{label:"Red-to-Green",value:"redgreen"},{label:"Red-to-green (saturated)",value:"red2green"},{label:"Relief",value:"relief"},{label:"Seismograph",value:"seis"},{label:"Sealand",value:"sealand"},{label:"Split",value:"split"},{label:"Wysiwyg",value:"wysiwyg"}]},url_template:{title:"Url template",info:"Enter a url to link the labels with external sources. Use __LABEL__ as placeholder.",type:"text",init:"",placeholder:"http://someurl.com?id=__LABEL__"}}})}),define("plugin/charts/others/heatmap_cluster/config",["plugin/charts/others/heatmap/config"],function(e){return $.extend(!0,{},e,{title:"Clustered Heatmap",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"heatmap",keywords:"small medium large"})}),define("plugin/charts/types",["plugin/charts/nvd3/bar/config","plugin/charts/nvd3/bar_stacked/config","plugin/charts/nvd3/bar_horizontal/config","plugin/charts/nvd3/bar_horizontal_stacked/config","plugin/charts/nvd3/line_focus/config","plugin/charts/nvd3/pie/config","plugin/charts/nvd3/stackedarea_full/config","plugin/charts/nvd3/stackedarea_stream/config","plugin/charts/nvd3/histogram/config","plugin/charts/nvd3/line/config","plugin/charts/nvd3/scatter/config","plugin/charts/nvd3/stackedarea/config","plugin/charts/jqplot/bar/config","plugin/charts/jqplot/line/config","plugin/charts/jqplot/scatter/config","plugin/charts/jqplot/boxplot/config","plugin/charts/jqplot/histogram_discrete/config","plugin/charts/others/heatmap/config","plugin/charts/others/heatmap_cluster/config"],function(e,t,n,r,i,s,o,u,a,f,l,c,h,p,d,v,m,g,y){return Backbone.Model.extend({defaults:{nvd3_bar:e,nvd3_bar_stacked:t,nvd3_bar_horizontal:n,nvd3_bar_horizontal_stacked:r,nvd3_line_focus:i,nvd3_stackedarea:c,nvd3_stackedarea_full:o,nvd3_stackedarea_stream:u,nvd3_pie:s,nvd3_line:f,nvd3_scatter:l,nvd3_histogram:a,jqplot_bar:h,jqplot_histogram_discrete:m,jqplot_line:p,jqplot_scatter:d,jqplot_boxplot:v,others_heatmap:g,others_heatmap_cluster:y}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","plugin/library/ui","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/library/storage","plugin/views/viewer","plugin/views/editor","plugin/models/config","plugin/models/chart","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c){return Backbone.View.extend({initialize:function(t){this.options=t,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new f,this.types=new c,this.chart=new l,this.jobs=new i(this),this.datasets=new s(this),this.storage=new o(this),this.viewer_view=new u(this),this.editor_view=new a(this),this.$el.append(this.viewer_view.$el),this.$el.append(this.editor_view.$el);if(!this.storage.load())this.go("editor");else{this.go("viewer");var n=this;this.chart.deferred.execute(function(){n.chart.trigger("redraw")})}},go:function(e){$(".tooltip").hide();switch(e){case"editor":this.editor_view.show(),this.viewer_view.hide();break;case"viewer":this.editor_view.hide(),this.viewer_view.show()}},chartPath:function(e){var t=e.split(/_(.+)/);return t.length>=2?t[0]+"/"+t[1]:(console.debug("FAILED App:chartPath() - Invalid format: "+e),undefined)},execute:function(e){},onunload:function(){},log:function(e,t){console.log(e+" "+t)}})}); \ No newline at end of file +define("mvc/ui/ui-modal",[],function(){var e=Backbone.View.extend({elMain:"body",optionsDefault:{title:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null},buttonList:{},initialize:function(e){e&&this._create(e)},show:function(e){this.initialize(e),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width),this.visible?this.$el.show():this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback()},enableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!0)},showButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).show()},hideButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).hide()},getButton:function(e){var t=this.buttonList[e];return this.$buttons.find("#"+t)},scrollTop:function(){return this.$body.scrollTop()},_create:function(e){var t=this;this.options=_.defaults(e,this.optionsDefault),this.options.body=="progress"&&(this.options.body=$('
    ')),this.$el&&(this.$el.remove(),$(document).off("keyup.ui-modal")),this.setElement(this._template(this.options.title)),this.$dialog=this.$el.find(".modal-dialog"),this.$body=this.$el.find(".modal-body"),this.$footer=this.$el.find(".modal-footer"),this.$buttons=this.$el.find(".buttons"),this.$backdrop=this.$el.find(".modal-backdrop"),this.$body.html(this.options.body),this.options.backdrop||this.$backdrop.removeClass("in");if(this.options.buttons){this.buttonList={};var n=0;$.each(this.options.buttons,function(e,r){var i="button-"+n++;t.$buttons.append($('').text(e).click(r)).append(" "),t.buttonList[e]=i})}else this.$footer.hide();$(this.elMain).append($(this.el)),this.options.closing_events&&($(document).on("keyup.ui-modal",function(e){e.keyCode==27&&t.hide()}),this.$el.find(".modal-backdrop").on("click",function(){t.hide()}))},_template:function(e){return'

    '+e+"

    "+"
    "+'
    '+'
    '+'
    '+"
    "+""+"
    "}});return{View:e}}),function(){var e=this,t=e._,n={},r=Array.prototype,i=Object.prototype,s=Function.prototype,o=r.push,u=r.slice,a=r.concat,f=i.toString,l=i.hasOwnProperty,c=r.forEach,h=r.map,p=r.reduce,d=r.reduceRight,v=r.filter,m=r.every,g=r.some,y=r.indexOf,b=r.lastIndexOf,w=Array.isArray,E=Object.keys,S=s.bind,x=function(e){if(e instanceof x)return e;if(!(this instanceof x))return new x(e);this._wrapped=e};typeof exports!="undefined"?(typeof module!="undefined"&&module.exports&&(exports=module.exports=x),exports._=x):e._=x,x.VERSION="1.4.4";var T=x.each=x.forEach=function(e,t,r){if(e==null)return;if(c&&e.forEach===c)e.forEach(t,r);else if(e.length===+e.length){for(var i=0,s=e.length;i2;e==null&&(e=[]);if(p&&e.reduce===p)return r&&(t=x.bind(t,r)),i?e.reduce(t,n):e.reduce(t);T(e,function(e,s,o){i?n=t.call(r,n,e,s,o):(n=e,i=!0)});if(!i)throw new TypeError(N);return n},x.reduceRight=x.foldr=function(e,t,n,r){var i=arguments.length>2;e==null&&(e=[]);if(d&&e.reduceRight===d)return r&&(t=x.bind(t,r)),i?e.reduceRight(t,n):e.reduceRight(t);var s=e.length;if(s!==+s){var o=x.keys(e);s=o.length}T(e,function(u,a,f){a=o?o[--s]:--s,i?n=t.call(r,n,e[a],a,f):(n=e[a],i=!0)});if(!i)throw new TypeError(N);return n},x.find=x.detect=function(e,t,n){var r;return C(e,function(e,i,s){if(t.call(n,e,i,s))return r=e,!0}),r},x.filter=x.select=function(e,t,n){var r=[];return e==null?r:v&&e.filter===v?e.filter(t,n):(T(e,function(e,i,s){t.call(n,e,i,s)&&r.push(e)}),r)},x.reject=function(e,t,n){return x.filter(e,function(e,r,i){return!t.call(n,e,r,i)},n)},x.every=x.all=function(e,t,r){t||(t=x.identity);var i=!0;return e==null?i:m&&e.every===m?e.every(t,r):(T(e,function(e,s,o){if(!(i=i&&t.call(r,e,s,o)))return n}),!!i)};var C=x.some=x.any=function(e,t,r){t||(t=x.identity);var i=!1;return e==null?i:g&&e.some===g?e.some(t,r):(T(e,function(e,s,o){if(i||(i=t.call(r,e,s,o)))return n}),!!i)};x.contains=x.include=function(e,t){return e==null?!1:y&&e.indexOf===y?e.indexOf(t)!=-1:C(e,function(e){return e===t})},x.invoke=function(e,t){var n=u.call(arguments,2),r=x.isFunction(t);return x.map(e,function(e){return(r?t:e[t]).apply(e,n)})},x.pluck=function(e,t){return x.map(e,function(e){return e[t]})},x.where=function(e,t,n){return x.isEmpty(t)?n?void 0:[]:x[n?"find":"filter"](e,function(e){for(var n in t)if(t[n]!==e[n])return!1;return!0})},x.findWhere=function(e,t){return x.where(e,t,!0)},x.max=function(e,t,n){if(!t&&x.isArray(e)&&e[0]===+e[0]&&e.length<65535)return Math.max.apply(Math,e);if(!t&&x.isEmpty(e))return-Infinity;var r={computed:-Infinity,value:-Infinity};return T(e,function(e,i,s){var o=t?t.call(n,e,i,s):e;o>=r.computed&&(r={value:e,computed:o})}),r.value},x.min=function(e,t,n){if(!t&&x.isArray(e)&&e[0]===+e[0]&&e.length<65535)return Math.min.apply(Math,e);if(!t&&x.isEmpty(e))return Infinity;var r={computed:Infinity,value:Infinity};return T(e,function(e,i,s){var o=t?t.call(n,e,i,s):e;or||n===void 0)return 1;if(n>>1;n.call(r,e[u])=0})})},x.difference=function(e){var t=a.apply(r,u.call(arguments,1));return x.filter(e,function(e){return!x.contains(t,e)})},x.zip=function(){var e=u.call(arguments),t=x.max(x.pluck(e,"length")),n=new Array(t);for(var r=0;r=0;n--)t=[e[n].apply(this,t)];return t[0]}},x.after=function(e,t){return e<=0?t():function(){if(--e<1)return t.apply(this,arguments)}},x.keys=E||function(e){if(e!==Object(e))throw new TypeError("Invalid object");var t=[];for(var n in e)x.has(e,n)&&t.push(n);return t},x.values=function(e){var t=[];for(var n in e)x.has(e,n)&&t.push(e[n]);return t},x.pairs=function(e){var t=[];for(var n in e)x.has(e,n)&&t.push([n,e[n]]);return t},x.invert=function(e){var t={};for(var n in e)x.has(e,n)&&(t[e[n]]=n);return t},x.functions=x.methods=function(e){var t=[];for(var n in e)x.isFunction(e[n])&&t.push(n);return t.sort()},x.extend=function(e){return T(u.call(arguments,1),function(t){if(t)for(var n in t)e[n]=t[n]}),e},x.pick=function(e){var t={},n=a.apply(r,u.call(arguments,1));return T(n,function(n){n in e&&(t[n]=e[n])}),t},x.omit=function(e){var t={},n=a.apply(r,u.call(arguments,1));for(var i in e)x.contains(n,i)||(t[i]=e[i]);return t},x.defaults=function(e){return T(u.call(arguments,1),function(t){if(t)for(var n in t)e[n]===void 0&&(e[n]=t[n])}),e},x.clone=function(e){return x.isObject(e)?x.isArray(e)?e.slice():x.extend({},e):e},x.tap=function(e,t){return t(e),e};var M=function(e,t,n,r){if(e===t)return e!==0||1/e==1/t;if(e==null||t==null)return e===t;e instanceof x&&(e=e._wrapped),t instanceof x&&(t=t._wrapped);var i=f.call(e);if(i!=f.call(t))return!1;switch(i){case"[object String]":return e==String(t);case"[object Number]":return e!=+e?t!=+t:e==0?1/e==1/t:e==+t;case"[object Date]":case"[object Boolean]":return+e==+t;case"[object RegExp]":return e.source==t.source&&e.global==t.global&&e.multiline==t.multiline&&e.ignoreCase==t.ignoreCase}if(typeof e!="object"||typeof t!="object")return!1;var s=n.length;while(s--)if(n[s]==e)return r[s]==t;n.push(e),r.push(t);var o=0,u=!0;if(i=="[object Array]"){o=e.length,u=o==t.length;if(u)while(o--)if(!(u=M(e[o],t[o],n,r)))break}else{var a=e.constructor,l=t.constructor;if(a!==l&&!(x.isFunction(a)&&a instanceof a&&x.isFunction(l)&&l instanceof l))return!1;for(var c in e)if(x.has(e,c)){o++;if(!(u=x.has(t,c)&&M(e[c],t[c],n,r)))break}if(u){for(c in t)if(x.has(t,c)&&!(o--))break;u=!o}}return n.pop(),r.pop(),u};x.isEqual=function(e,t){return M(e,t,[],[])},x.isEmpty=function(e){if(e==null)return!0;if(x.isArray(e)||x.isString(e))return e.length===0;for(var t in e)if(x.has(e,t))return!1;return!0},x.isElement=function(e){return!!e&&e.nodeType===1},x.isArray=w||function(e){return f.call(e)=="[object Array]"},x.isObject=function(e){return e===Object(e)},T(["Arguments","Function","String","Number","Date","RegExp"],function(e){x["is"+e]=function(t){return f.call(t)=="[object "+e+"]"}}),x.isArguments(arguments)||(x.isArguments=function(e){return!!e&&!!x.has(e,"callee")}),typeof /./!="function"&&(x.isFunction=function(e){return typeof e=="function"}),x.isFinite=function(e){return isFinite(e)&&!isNaN(parseFloat(e))},x.isNaN=function(e){return x.isNumber(e)&&e!=+e},x.isBoolean=function(e){return e===!0||e===!1||f.call(e)=="[object Boolean]"},x.isNull=function(e){return e===null},x.isUndefined=function(e){return e===void 0},x.has=function(e,t){return l.call(e,t)},x.noConflict=function(){return e._=t,this},x.identity=function(e){return e},x.times=function(e,t,n){var r=Array(e);for(var i=0;i":">",'"':""","'":"'","/":"/"}};_.unescape=x.invert(_.escape);var D={escape:new RegExp("["+x.keys(_.escape).join("")+"]","g"),unescape:new RegExp("("+x.keys(_.unescape).join("|")+")","g")};x.each(["escape","unescape"],function(e){x[e]=function(t){return t==null?"":(""+t).replace(D[e],function(t){return _[e][t]})}}),x.result=function(e,t){if(e==null)return void 0;var n=e[t];return x.isFunction(n)?n.call(e):n},x.mixin=function(e){T(x.functions(e),function(t){var n=x[t]=e[t];x.prototype[t]=function(){var e=[this._wrapped];return o.apply(e,arguments),F.call(this,n.apply(x,e))}})};var P=0;x.uniqueId=function(e){var t=++P+"";return e?e+t:t},x.templateSettings={evaluate:/<%([\s\S]+?)%>/g,interpolate:/<%=([\s\S]+?)%>/g,escape:/<%-([\s\S]+?)%>/g};var H=/(.)^/,B={"'":"'","\\":"\\","\r":"r","\n":"n"," ":"t","\u2028":"u2028","\u2029":"u2029"},j=/\\|'|\r|\n|\t|\u2028|\u2029/g;x.template=function(e,t,n){var r;n=x.defaults({},n,x.templateSettings);var i=new RegExp([(n.escape||H).source,(n.interpolate||H).source,(n.evaluate||H).source].join("|")+"|$","g"),s=0,o="__p+='";e.replace(i,function(t,n,r,i,u){return o+=e.slice(s,u).replace(j,function(e){return"\\"+B[e]}),n&&(o+="'+\n((__t=("+n+"))==null?'':_.escape(__t))+\n'"),r&&(o+="'+\n((__t=("+r+"))==null?'':__t)+\n'"),i&&(o+="';\n"+i+"\n__p+='"),s=u+t.length,t}),o+="';\n",n.variable||(o="with(obj||{}){\n"+o+"}\n"),o="var __t,__p='',__j=Array.prototype.join,print=function(){__p+=__j.call(arguments,'');};\n"+o+"return __p;\n";try{r=new Function(n.variable||"obj","_",o)}catch(u){throw u.source=o,u}if(t)return r(t,x);var a=function(e){return r.call(this,e,x)};return a.source="function("+(n.variable||"obj")+"){\n"+o+"}",a},x.chain=function(e){return x(e).chain()};var F=function(e){return this._chain?x(e).chain():e};x.mixin(x),T(["pop","push","reverse","shift","sort","splice","unshift"],function(e){var t=r[e];x.prototype[e]=function(){var n=this._wrapped;return t.apply(n,arguments),(e=="shift"||e=="splice")&&n.length===0&&delete n[0],F.call(this,n)}}),T(["concat","join","slice"],function(e){var t=r[e];x.prototype[e]=function(){return F.call(this,t.apply(this._wrapped,arguments))}}),x.extend(x.prototype,{chain:function(){return this._chain=!0,this},value:function(){return this._wrapped}})}.call(this),define("libs/underscore",function(e){return function(){var t,n;return t||e._}}(this)),define("utils/utils",["libs/underscore"],function(e){function t(e,t,r){n("GET",e,{},t,r)}function n(e,t,n,r,i){if(e=="GET"||e=="DELETE")t.indexOf("?")==-1?t+="?":t+="&",t+=$.param(n);var s=new XMLHttpRequest;s.open(e,t,!0),s.setRequestHeader("Accept","application/json"),s.setRequestHeader("Cache-Control","no-cache"),s.setRequestHeader("X-Requested-With","XMLHttpRequest"),s.setRequestHeader("Content-Type","application/json"),s.onloadend=function(){var e=s.status;try{response=jQuery.parseJSON(s.responseText)}catch(t){response=s.responseText}e==200?r&&r(response):i&&i(response)},e=="GET"||e=="DELETE"?s.send():s.send(JSON.stringify(n))}function r(e,t){var n=$('
    ');n.appendTo(":eq(0)");var r=n.css(t);return n.remove(),r}function i(e){$('link[href^="'+e+'"]').length||$('').appendTo("head")}function s(t,n){return t?e.defaults(t,n):n}function o(e,t){var n="";if(e>=1e11)e/=1e11,n="TB";else if(e>=1e8)e/=1e8,n="GB";else if(e>=1e5)e/=1e5,n="MB";else if(e>=100)e/=100,n="KB";else{if(!(e>0))return"-";e*=10,n="b"}var r=Math.round(e)/10;return t?r+" "+n:""+r+" "+n}function u(){return"x"+Math.random().toString(36).substring(2,9)}function a(e){var t=$("

    ");return t.append(e),t}function f(){var e=new Date,t=(e.getHours()<10?"0":"")+e.getHours(),n=(e.getMinutes()<10?"0":"")+e.getMinutes(),r=e.getDate()+"/"+(e.getMonth()+1)+"/"+e.getFullYear()+", "+t+":"+n;return r}return{cssLoadFile:i,cssGetAttribute:r,get:t,merge:s,bytesToString:o,uuid:u,time:f,wrap:a,request:n}}),define("mvc/ui/ui-portlet",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,placement:"bottom"},$title:null,$content:null,$buttons:null,$operations:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$content=this.$el.find("#content"),this.$title=this.$el.find("#portlet-header-text");var n=this.$el.find("#portlet-content");this.options.scrollable?n.addClass("scroll"):this.options.title?n.addClass("no-scroll"):n.addClass("no-scroll-no-title"),this.options.nopadding&&(n.css("padding","0px"),this.$content.css("padding","0px")),this.$buttons=$(this.el).find("#buttons");if(this.options.buttons){var r=this;$.each(this.options.buttons,function(e,t){t.$el.prop("id",e),r.$buttons.append(t.$el)})}else this.$buttons.remove();this.$operations=$(this.el).find("#operations");if(this.options.operations){var r=this;$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$operations.append(t.$el)})}this.options.body&&this.append(this.options.body)},append:function(t){this.$content.append(e.wrap(t))},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},enableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!1)},disableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!0)},hideOperation:function(e){this.$operations.find("#"+e).hide()},showOperation:function(e){this.$operations.find("#"+e).show()},setOperation:function(e,t){var n=this.$operations.find("#"+e);n.off("click"),n.on("click",t)},title:function(e){var t=this.$title;return e&&t.html(e),t.html()},_template:function(e){var t='
    ';return e.title&&(t+='

    ',e.icon&&(t+=' '),t+=''+e.title+""+"

    "+"
    "),t+='
    ',e.placement=="top"&&(t+='
    '),t+='
    ',e.placement=="bottom"&&(t+='
    '),t+="
    ",t}});return{View:t}}),define("plugin/library/ui-select",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{id:"",cls:"",empty:"No data available",visible:!0,wait:!1},selected:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.selected=this.options.value,this.setElement(this._template(this.options)),this.$select=this.$el.find("#select"),this.$icon=this.$el.find("#icon");var n=this;this.$select.on("change",function(){n.value(n.$select.val())}),this.on("change",function(){n.options.onchange&&n.options.onchange(n.value())}),this._refresh(),this.options.visible||this.hide(),this.options.wait?this.wait():this.show()},value:function(e){var t=this.selected;e!==undefined&&(this.selected=e,this.$select.val(e));var n=this.selected;return n&&n!=t&&this.options.onchange&&this.options.onchange(n),n},first:function(){var e=this.$select.find("option");return e.length>0?e.val():undefined},text:function(){return this.$select.find("option:selected").text()},show:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-caret-down"),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-spinner fa-spin"),this.$select.hide()},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},add:function(e){this.$select.append(this._templateOption(e)),this._refresh()},del:function(e){this.$select.find("option[value="+e+"]").remove(),this.$select.trigger("change"),this._refresh()},update:function(e){this.$select.find("option").remove();for(var t in e)this.$select.append(this._templateOption(e[t]));this._refresh()},setOnChange:function(e){this.options.onchange=e},exists:function(e){return this.$select.find("option[value="+e+"]").length>0},_refresh:function(){this.$select.find("option[value=null]").remove();var e=this.$select.find("option").length;e==0?(this.disable(),this.$select.append(this._templateOption({value:"null",label:this.options.empty}))):this.enable(),this.selected&&this.$select.val(this.selected)},_templateOption:function(e){return'"},_template:function(e){var t='
    '+'
    '+''+"
    "+'
    ",t}});return{View:t}}),define("plugin/library/ui-button-menu",["utils/utils"],function(e){return Backbone.View.extend({optionsDefault:{id:"",title:"","float":"right",icon:null,onclick:null,cls:"icon-btn",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""},$menu:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='
  • ';return e.icon&&(t+=''),t+=" "+e.title+""+"
    • ",t},_templateMenu:function(){return''},_templateDivider:function(){return'
  • '},_template:function(e){var t="";e.title&&(t="width: auto;");var n='",n}})}),define("plugin/library/ui",["utils/utils","plugin/library/ui-select","plugin/library/ui-button-menu","mvc/ui/ui-modal"],function(e,t,n,r){var i=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return''}}),s=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'"},value:function(){return options.title}}),o=Backbone.View.extend({optionsDefault:{"float":"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'
     '+e.title+"
    "}}),u=Backbone.View.extend({optionsDefault:{id:null,title:"","float":"right",cls:"btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='",t}}),a=Backbone.View.extend({optionsDefault:{id:null,title:"","float":"right",cls:"icon-btn",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t="";e.title&&(t="width: auto;");var n='
    ';return e.title?n+='
     '+''+e.title+""+"
    ":n+='',n+="
    ",n}}),f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'"}}),l=Backbone.View.extend({optionsDefault:{message:"",status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement("
    ")},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn();if(!t.persistent){var n=this;window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return'
    '}}),c=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'
    '+'"+"
    "+"
    "}}),h=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0,cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return''}}),p=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0,cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return''}}),d=Backbone.View.extend({optionsDefault:{value:"",visible:!0,cls:"",data:[],id:e.uuid()},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.visible||this.$el.hide(),this.options.value&&this.value(this.options.value),this.current=this.options.value;var n=this;this.$el.find("input").on("change",function(){n.value(n._getValue())})},value:function(e){var t=this.current;e!==undefined&&(this.$el.find("label").removeClass("active"),this.$el.find('[value="'+e+'"]').closest("label").addClass("active"),this.current=e);var n=this.current;return n!=t&&this.options.onchange&&this.options.onchange(this.current),this.current},_getValue:function(){var e=this.$el.find(":checked"),t=null;return e.length>0&&(t=e.val()),t},_template:function(e){var t='
    ';for(key in e.data){var n=e.data[key];t+='"}return t+="
    ",t}});return{Anchor:f,Button:u,ButtonIcon:a,ButtonMenu:n,Icon:o,Image:i,Input:h,Label:s,Message:l,Modal:r,RadioButton:d,Searchbox:c,Select:t,Textarea:p}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request("PUT",config.root+"api/histories/none/contents/"+r,{deleted:!0},function(){n._refreshHdas()}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request("POST",config.root+"api/tools",data,function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),this.app.storage.save(),o._wait(t,i,s)}},function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()})},_wait:function(t,n,r){var i=this;e.request("GET",config.root+"api/datasets/"+t.get("dataset_id_job"),{},function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function h(i){c._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++l
    '},_templateContainer:function(e,t){return'
    '+'"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i",{id:"viewport-form",method:"post",action:"http://export.highcharts.com/",display:"none"}),r.append(i)),i.empty();for(name in n){var s=$("",{type:"hidden",name:name,value:n[name]});i.append(s)}try{i.submit()}catch(o){console.log(o)}}function a(e){if(e.$el.find("svg").length==0&&e.error){e.error("No SVG found. This chart type does not support SVG/PDF export.");return}var t=e.$el,n=t.find("svg").length,r=parseInt(t.find("svg").first().css("height")),i=parseInt(t.find("svg").first().css("width")),s=new XMLSerializer,u=$("");u.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:i*n,height:r});var a="",f=0;return t.find("svg").each(function(){var e=$(this).clone();o(e);var t=$('');t.append(e.find("g").first()),u.append(t),f+=i}),{string:s.serializeToString(u[0]),height:r,width:i}}return{createPNG:t,createSVG:s,createPDF:u}}),define("plugin/views/viewer",["utils/utils","plugin/library/ui","mvc/ui/ui-portlet","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i){return Backbone.View.extend({initialize:function(e,s){this.app=e,this.chart=this.app.chart,this.viewport_view=new r(e);var o=this;this.message=new t.Message;var u=new t.ButtonMenu({icon:"fa-camera",title:"Screenshot",tooltip:"Download as PNG, SVG or PDF file"});u.addMenu({id:"button-png",title:"Save as PNG",icon:"fa-file",onclick:function(){o._wait(o.chart,function(){i.createPNG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-svg",title:"Save as SVG",icon:"fa-file-text-o",onclick:function(){o._wait(o.chart,function(){i.createSVG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-png",title:"Save as PDF",icon:"fa-file-o",onclick:function(){o.app.modal.show({title:"Send chart data for PDF creation",body:"Galaxy does not provide integrated PDF export scripts. You may click 'Continue' to create the PDF by using a 3rd party service (https://export.highcharts.com).",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o._wait(o.chart,function(){i.createPDF({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}})}}),this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",scrollable:!1,operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button_menu:u}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){this.app.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),_.size(this.list)==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n);if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)})},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#tab-content-"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list)this.list[e]&&this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find(".tab-element").removeClass("active"),this.$el.find(".tab-pane").removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#tab-content-"+e).addClass("active"))},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},_template:function(e){return'
    '},_template_tab_new:function(e){return'
  • '+e.title_new+""+"
    • "},_template_tab:function(e){var t='
  • '+''+''+e.title+"";return e.ondel&&(t+=''),t+="
    • ",t},_template_tab_content:function(e){return'
    '}});return{View:t}}),define("plugin/library/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(t));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=$("")},addHeader:function(e){var t=$("");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("")},add:function(e,t,n){var r=$("");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.del(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$(""),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'
    '+""+''+"
    "+""+e.content+""+"
    "}});return{View:t}}),define("plugin/views/group",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("
    ");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.app.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.app.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('
    ');this.options.title&&s.append(n.wrap(this.table_title.$el)),s.append(n.wrap(this.table.$el)),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("
    ");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("
    ");u.append(s.$el),n.info&&u.append('
    '+n.info+"
    "),this.options.style=="bold"?(this.table.add((new t.Label({title:n.title,cls:"form-label"})).$el),this.table.add(u)):(this.table.add(''+n.title+"","25%"),this.table.add(u))}else this.table.add('
    '+n.title+":
    "),this.table.add($("
    "));this.table.append(e),n.hide&&this.table.get(e).hide()}});return{View:r}}),define("plugin/views/settings",["plugin/library/ui","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View(e,{content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refresh()})},_refresh:function(){var e=this.chart.definition;if(!e)return;this.form.title(e.category+" - "+e.title+":"),this.form.update(e.settings,this.chart.settings)}})}),define("plugin/views/types",["utils/utils","plugin/library/ui"],function(e,t){return Backbone.View.extend({optionsDefault:{onchange:null,ondblclick:null},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(n,r){var i=this;this.app=n,this.options=e.merge(r,this.optionsDefault);var s=$('
    ');s.append(e.wrap((new t.Label({title:"How many data points would you like to analyze?"})).$el)),this.library=new t.RadioButton({data:[{label:"Few (<500)",value:"small"},{label:"Some (<10k)",value:"medium"},{label:"Many (>10k)",value:"large"}],onchange:function(e){i._filter(e)}}),s.append(e.wrap(this.library.$el)),this.setElement(s),this._render(),this.library.value("small")},value:function(e){var t=this.$el.find(".current").attr("id");e!==undefined&&(this.$el.find(".current").removeClass("current"),this.$el.find("#"+e).addClass("current"));var n=this.$el.find(".current").attr("id");return n===undefined?null:(n!=t&&this.options.onchange&&this.options.onchange(e),n)},_filter:function(e){this.$el.find(".header").hide();var t=this.app.types.attributes;for(var n in t){var r=t[n],i=this.$el.find("#"+n),s=this.$el.find("#types-header-"+this.categories_index[r.category]),o=r.keywords||"";o.indexOf(e)>=0?(i.show(),s.show()):i.hide()}},_render:function(){this.categories={},this.categories_index={};var t=0,n=this.app.types.attributes;for(var r in n){var i=n[r],s=i.category;this.categories[s]||(this.categories[s]={},this.categories_index[s]=t++),this.categories[s][r]=i}for(var s in this.categories){var o=$('
    ');o.append(e.wrap(this._template_header({id:"types-header-"+this.categories_index[s],title:s})));for(var r in this.categories[s]){var i=this.categories[s][r],u=i.title+" ("+i.library+")";i.zoomable&&(u=''+u),o.append(e.wrap(this._template_item({id:r,title:u,url:config.app_root+"charts/"+this.app.chartPath(r)+"/logo.png"})))}this.$el.append(e.wrap(o))}},_onclick:function(e){var t=this.value(),n=$(e.target).closest(".item").attr("id");n!=""&&n&&t!=n&&this.value(n)},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_template_header:function(e){return'
    '+"• "+e.title+"
    "},_template_item:function(e){return'
    '+''+'
    '+e.title+"
    "+"
    "}})}),define("plugin/views/editor",["mvc/ui/ui-tabs","plugin/library/ui","mvc/ui/ui-portlet","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings","plugin/views/types"],function(e,t,n,r,i,s,o,u,a){return Backbone.View.extend({initialize:function(i,s){var o=this;this.app=i,this.chart=this.app.chart,this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Editor",operations:{save:new t.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o._saveChart()}}),back:new t.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Cancel",onclick:function(){o.app.go("viewer"),o.app.storage.load()}})}}),this.types=new a(i,{onchange:function(e){var t=o.app.types.get(e);t||console.debug("FAILED - Editor::onchange() - Chart type not supported."),o.chart.definition=t,o.chart.settings.clear(),o.chart.set({type:e}),o.chart.set("modified",!0),console.debug("Editor::onchange() - Switched chart type.")},ondblclick:function(e){o._saveChart()}}),this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)}}),this.title=new t.Input({placeholder:"Chart title",onchange:function(){o.chart.set("title",o.title.value())}});var f=$("
    ");f.append(r.wrap((new t.Label({title:"Provide a chart title:"})).$el)),f.append(r.wrap(this.title.$el)),f.append(r.wrap(this.types.$el)),this.tabs.add({id:"main",title:"Start",$el:f}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.portlet.append(this.message.$el),this.portlet.append(this.tabs.$el),this.setElement(this.portlet.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o._refreshTitle()}),this.chart.on("change:type",function(e){o.types.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.chart.on("redraw",function(e){o.portlet.showOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e),this.title.value(e)},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Data label"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e});this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","nvd3_bar"),this.chart.set("dataset_id",this.app.options.config.dataset_id),this.chart.set("title","New Chart"),this.portlet.hideOperation("back")},_saveChart:function(){this.chart.set({type:this.types.value(),title:this.title.value(),date:r.time()});if(this.chart.groups.length==0){this.message.update({message:"Please select data columns before drawing the chart."});var e=this._addGroupModel();this.tabs.show(e.id);return}var t=this,n=!0,i=this.chart.definition;this.chart.groups.each(function(e){if(!n)return;for(var r in i.columns)if(e.attributes[r]=="null"){t.message.update({status:"danger",message:"This chart type requires column types not found in your tabular file."}),t.tabs.show(e.id),n=!1;return}});if(!n)return;this.app.go("viewer");var t=this;this.app.deferred.execute(function(){t.app.storage.save(),t.chart.trigger("redraw")})}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:500,query_timeout:100}})}),define("plugin/charts/forms/default",[],function(){return{title:"",category:"",library:"",tag:"",keywords:"",query_limit:0,settings:{separator_x:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["x_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["x_axis_precision"]}},{label:"Float",value:"f",operations:{show:["x_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["x_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["x_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["x_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["x_axis_precision"]}}]},x_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_y:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["y_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["y_axis_precision"]}},{label:"Float",value:"f",operations:{show:["y_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["y_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["y_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["y_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["y_axis_precision"]}}]},y_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"true",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{title:"Use multi-panels",info:"Would you like to separate your data into individual panels?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}}}),function(){function t(e,t){return(new Date(t,e+1,0)).getDate()}function n(e,t,n){return function(r,i,s){var o=e(r),u=[];o1)while(op||r>d||d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined||a){if(l&&d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined&&d3.event.relatedTarget.className.match(t.nvPointerEventsClass))return;u.elementMouseout({mouseX:n,mouseY:r}),c.renderGuideLine(null);return}var f=s.invert(n);u.elementMousemove({mouseX:n,mouseY:r,pointXValue:f}),d3.event.type==="dblclick"&&u.elementDblclick({mouseX:n,mouseY:r,pointXValue:f})}var h=d3.select(this),p=n||960,d=r||400,v=h.selectAll("g.nv-wrap.nv-interactiveLineLayer").data([o]),m=v.enter().append("g").attr("class"," nv-wrap nv-interactiveLineLayer");m.append("g").attr("class","nv-interactiveGuideLine");if(!f)return;f.on("mousemove",g,!0).on("mouseout",g,!0).on("dblclick",g),c.renderGuideLine=function(t){if(!a)return;var n=v.select(".nv-interactiveGuideLine").selectAll("line").data(t!=null?[e.utils.NaNtoZero(t)]:[],String);n.enter().append("line").attr("class","nv-guideline").attr("x1",function(e){return e}).attr("x2",function(e){return e}).attr("y1",d).attr("y2",0),n.exit().remove()}})}var t=e.models.tooltip(),n=null,r=null,i={left:0,top:0},s=d3.scale.linear(),o=d3.scale.linear(),u=d3.dispatch("elementMousemove","elementMouseout","elementDblclick"),a=!0,f=null,l=navigator.userAgent.indexOf("MSIE")!==-1;return c.dispatch=u,c.tooltip=t,c.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.left=typeof e.left!="undefined"?e.left:i.left,c):i},c.width=function(e){return arguments.length?(n=e,c):n},c.height=function(e){return arguments.length?(r=e,c):r},c.xScale=function(e){return arguments.length?(s=e,c):s},c.showGuideLine=function(e){return arguments.length?(a=e,c):a},c.svgContainer=function(e){return arguments.length?(f=e,c):f},c},e.interactiveBisect=function(e,t,n){if(!e instanceof Array)return null;typeof n!="function"&&(n=function(e,t){return e.x});var r=d3.bisector(n).left,i=d3.max([0,r(e,t)-1]),s=n(e[i],i);typeof s=="undefined"&&(s=i);if(s===t)return i;var o=d3.min([i+1,e.length-1]),u=n(e[o],o);return typeof u=="undefined"&&(u=o),Math.abs(u-t)>=Math.abs(s-t)?i:o},e.nearestValueIndex=function(e,t,n){var r=Infinity,i=null;return e.forEach(function(e,s){var o=Math.abs(t-e);o<=r&&oT.height?0:x}v.top=Math.abs(x-S.top),v.left=Math.abs(E.left-S.left)}t+=a.offsetLeft+v.left-2*a.scrollLeft,u+=a.offsetTop+v.top-2*a.scrollTop}return s&&s>0&&(u=Math.floor(u/s)*s),e.tooltip.calcTooltipPosition([t,u],r,i,h),w}var t=null,n=null,r="w",i=50,s=25,o=null,u=null,a=null,f=null,l={left:null,top:null},c=!0,h="nvtooltip-"+Math.floor(Math.random()*1e5),p="nv-pointer-events-none",d=function(e,t){return e},v=function(e){return e},m=function(e){if(t!=null)return t;if(e==null)return"";var n=d3.select(document.createElement("table")),r=n.selectAll("thead").data([e]).enter().append("thead");r.append("tr").append("td").attr("colspan",3).append("strong").classed("x-value",!0).html(v(e.value));var i=n.selectAll("tbody").data([e]).enter().append("tbody"),s=i.selectAll("tr").data(function(e){return e.series}).enter().append("tr").classed("highlight",function(e){return e.highlight});s.append("td").classed("legend-color-guide",!0).append("div").style("background-color",function(e){return e.color}),s.append("td").classed("key",!0).html(function(e){return e.key}),s.append("td").classed("value",!0).html(function(e,t){return d(e.value,t)}),s.selectAll("td").each(function(e){if(e.highlight){var t=d3.scale.linear().domain([0,1]).range(["#fff",e.color]),n=.6;d3.select(this).style("border-bottom-color",t(n)).style("border-top-color",t(n))}});var o=n.node().outerHTML;return e.footer!==undefined&&(o+="
    "+e.footer+"
    "),o},g=function(e){return e&&e.series&&e.series.length>0?!0:!1};return w.nvPointerEventsClass=p,w.content=function(e){return arguments.length?(t=e,w):t},w.tooltipElem=function(){return f},w.contentGenerator=function(e){return arguments.length?(typeof e=="function"&&(m=e),w):m},w.data=function(e){return arguments.length?(n=e,w):n},w.gravity=function(e){return arguments.length?(r=e,w):r},w.distance=function(e){return arguments.length?(i=e,w):i},w.snapDistance=function(e){return arguments.length?(s=e,w):s},w.classes=function(e){return arguments.length?(u=e,w):u},w.chartContainer=function(e){return arguments.length?(a=e,w):a},w.position=function(e){return arguments.length?(l.left=typeof e.left!="undefined"?e.left:l.left,l.top=typeof e.top!="undefined"?e.top:l.top,w):l},w.fixedTop=function(e){return arguments.length?(o=e,w):o},w.enabled=function(e){return arguments.length?(c=e,w):c},w.valueFormatter=function(e){return arguments.length?(typeof e=="function"&&(d=e),w):d},w.headerFormatter=function(e){return arguments.length?(typeof e=="function"&&(v=e),w):v},w.id=function(){return h},w},e.tooltip.show=function(t,n,r,i,s,o){var u=document.createElement("div");u.className="nvtooltip "+(o?o:"xy-tooltip");var a=s;if(!s||s.tagName.match(/g|svg/i))a=document.getElementsByTagName("body")[0];u.style.left=0,u.style.top=0,u.style.opacity=0,u.innerHTML=n,a.appendChild(u),s&&(t[0]=t[0]-s.scrollLeft,t[1]=t[1]-s.scrollTop),e.tooltip.calcTooltipPosition(t,r,i,u)},e.tooltip.findFirstNonSVGParent=function(e){while(e.tagName.match(/^g|svg$/i)!==null)e=e.parentNode;return e},e.tooltip.findTotalOffsetTop=function(e,t){var n=t;do isNaN(e.offsetTop)||(n+=e.offsetTop);while(e=e.offsetParent);return n},e.tooltip.findTotalOffsetLeft=function(e,t){var n=t;do isNaN(e.offsetLeft)||(n+=e.offsetLeft);while(e=e.offsetParent);return n},e.tooltip.calcTooltipPosition=function(t,n,r,i){var s=parseInt(i.offsetHeight),o=parseInt(i.offsetWidth),u=e.utils.windowSize().width,a=e.utils.windowSize().height,f=window.pageYOffset,l=window.pageXOffset,c,h;a=window.innerWidth>=document.body.scrollWidth?a:a-16,u=window.innerHeight>=document.body.scrollHeight?u:u-16,n=n||"s",r=r||20;var p=function(t){return e.tooltip.findTotalOffsetTop(t,h)},d=function(t){return e.tooltip.findTotalOffsetLeft(t,c)};switch(n){case"e":c=t[0]-o-r,h=t[1]-s/2;var v=d(i),m=p(i);vl?t[0]+r:l-v+c),mf+a&&(h=f+a-m+h-s);break;case"w":c=t[0]+r,h=t[1]-s/2;var v=d(i),m=p(i);v+o>u&&(c=t[0]-o-r),mf+a&&(h=f+a-m+h-s);break;case"n":c=t[0]-o/2-5,h=t[1]+r;var v=d(i),m=p(i);vu&&(c=c-o/2+5),m+s>f+a&&(h=f+a-m+h-s);break;case"s":c=t[0]-o/2,h=t[1]-s-r;var v=d(i),m=p(i);vu&&(c=c-o/2+5),f>m&&(h=f);break;case"none":c=t[0],h=t[1]-r;var v=d(i),m=p(i)}return i.style.left=c+"px",i.style.top=h+"px",i.style.opacity=1,i.style.position="absolute",i},e.tooltip.cleanup=function(){var e=document.getElementsByClassName("nvtooltip"),t=[];while(e.length)t.push(e[0]),e[0].style.transitionDelay="0 !important",e[0].style.opacity=0,e[0].className="nvtooltip-pending-removal";setTimeout(function(){while(t.length){var e=t.pop();e.parentNode.removeChild(e)}},500)}}(),e.utils.windowSize=function(){var e={width:640,height:480};return document.body&&document.body.offsetWidth&&(e.width=document.body.offsetWidth,e.height=document.body.offsetHeight),document.compatMode=="CSS1Compat"&&document.documentElement&&document.documentElement.offsetWidth&&(e.width=document.documentElement.offsetWidth,e.height=document.documentElement.offsetHeight),window.innerWidth&&window.innerHeight&&(e.width=window.innerWidth,e.height=window.innerHeight),e},e.utils.windowResize=function(e){if(e===undefined)return;var t=window.onresize;window.onresize=function(n){typeof t=="function"&&t(n),e(n)}},e.utils.getColor=function(t){return arguments.length?Object.prototype.toString.call(t)==="[object Array]"?function(e,n){return e.color||t[n%t.length]}:t:e.utils.defaultColor()},e.utils.defaultColor=function(){var e=d3.scale.category20().range();return function(t,n){return t.color||e[n%e.length]}},e.utils.customTheme=function(e,t,n){t=t||function(e){return e.key},n=n||d3.scale.category20().range();var r=n.length;return function(i,s){var o=t(i);return r||(r=n.length),typeof e[o]!="undefined"?typeof e[o]=="function"?e[o]():e[o]:n[--r]}},e.utils.pjax=function(t,n){function r(r){d3.html(r,function(r){var i=d3.select(n).node();i.parentNode.replaceChild(d3.select(r).select(n).node(),i),e.utils.pjax(t,n)})}d3.selectAll(t).on("click",function(){history.pushState(this.href,this.textContent,this.href),r(this.href),d3.event.preventDefault()}),d3.select(window).on("popstate",function(){d3.event.state&&r(d3.event.state)})},e.utils.calcApproxTextWidth=function(e){if(typeof e.style=="function"&&typeof e.text=="function"){var t=parseInt(e.style("font-size").replace("px","")),n=e.text().length;return n*t*.5}return 0},e.utils.NaNtoZero=function(e){return typeof e!="number"||isNaN(e)||e===null||e===Infinity?0:e},e.utils.optionsFunc=function(e){return e&&d3.map(e).forEach(function(e,t){typeof this[e]=="function"&&this[e](t)}.bind(this)),this},e.models.axis=function(){function m(e){return e.each(function(e){var i=d3.select(this),m=i.selectAll("g.nv-wrap.nv-axis").data([e]),g=m.enter().append("g").attr("class","nvd3 nv-wrap nv-axis"),y=g.append("g"),b=m.select("g");p!==null?t.ticks(p):(t.orient()=="top"||t.orient()=="bottom")&&t.ticks(Math.abs(s.range()[1]-s.range()[0])/100),b.call(t),v=v||t.scale();var w=t.tickFormat();w==null&&(w=v.tickFormat());var E=b.selectAll("text.nv-axislabel").data([o||null]);E.exit().remove();switch(t.orient()){case"top":E.enter().append("text").attr("class","nv-axislabel");var S=s.range().length==2?s.range()[1]:s.range()[s.range().length-1]+(s.range()[1]-s.range()[0]);E.attr("text-anchor","middle").attr("y",0).attr("x",S/2);if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text"),x.exit().remove(),x.attr("transform",function(e,t){return"translate("+s(e)+",0)"}).select("text").attr("dy","-0.5em").attr("y",-t.tickPadding()).attr("text-anchor","middle").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate("+s.range()[t]+",0)"})}break;case"bottom":var T=36,N=30,C=b.selectAll("g").select("text");if(f%360){C.each(function(e,t){var n=this.getBBox().width;n>N&&(N=n)});var k=Math.abs(Math.sin(f*Math.PI/180)),T=(k?k*N:N)+30;C.attr("transform",function(e,t,n){return"rotate("+f+" 0,0)"}).style("text-anchor",f%360>0?"start":"end")}E.enter().append("text").attr("class","nv-axislabel");var S=s.range().length==2?s.range()[1]:s.range()[s.range().length-1]+(s.range()[1]-s.range()[0]);E.attr("text-anchor","middle").attr("y",T).attr("x",S/2);if(u){var x=m.selectAll("g.nv-axisMaxMin").data([s.domain()[0],s.domain()[s.domain().length-1]]);x.enter().append("g").attr("class","nv-axisMaxMin").append("text"),x.exit().remove(),x.attr("transform",function(e,t){return"translate("+(s(e)+(h?s.rangeBand()/2:0))+",0)"}).select("text").attr("dy",".71em").attr("y",t.tickPadding()).attr("transform",function(e,t,n){return"rotate("+f+" 0,0)"}).style("text-anchor",f?f%360>0?"start":"end":"middle").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate("+(s(e)+(h?s.rangeBand()/2:0))+",0)"})}c&&C.attr("transform",function(e,t){return"translate(0,"+(t%2==0?"0":"12")+")"});break;case"right":E.enter().append("text").attr("class","nv-axislabel"),E.style("text-anchor",l?"middle":"begin").attr("transform",l?"rotate(90)":"").attr("y",l?-Math.max(n.right,r)+12:-10).attr("x",l?s.range()[0]/2:t.tickPadding());if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text").style("opacity",0),x.exit().remove(),x.attr("transform",function(e,t){return"translate(0,"+s(e)+")"}).select("text").attr("dy",".32em").attr("y",0).attr("x",t.tickPadding()).style("text-anchor","start").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate(0,"+s.range()[t]+")"}).select("text").style("opacity",1)}break;case"left":E.enter().append("text").attr("class","nv-axislabel"),E.style("text-anchor",l?"middle":"end").attr("transform",l?"rotate(-90)":"").attr("y",l?-Math.max(n.left,r)+d:-10).attr("x",l?-s.range()[0]/2:-t.tickPadding());if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text").style("opacity",0),x.exit().remove(),x.attr("transform",function(e,t){return"translate(0,"+v(e)+")"}).select("text").attr("dy",".32em").attr("y",0).attr("x",-t.tickPadding()).attr("text-anchor","end").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate(0,"+s.range()[t]+")"}).select("text").style("opacity",1)}}E.text(function(e){return e}),u&&(t.orient()==="left"||t.orient()==="right")&&(b.selectAll("g").each(function(e,t){d3.select(this).select("text").attr("opacity",1);if(s(e)s.range()[0]-10)(e>1e-10||e<-1e-10)&&d3.select(this).attr("opacity",0),d3.select(this).select("text").attr("opacity",0)}),s.domain()[0]==s.domain()[1]&&s.domain()[0]==0&&m.selectAll("g.nv-axisMaxMin").style("opacity",function(e,t){return t?0:1}));if(u&&(t.orient()==="top"||t.orient()==="bottom")){var L=[];m.selectAll("g.nv-axisMaxMin").each(function(e,t){try{t?L.push(s(e)-this.getBBox().width-4):L.push(s(e)+this.getBBox().width+4)}catch(n){t?L.push(s(e)-4):L.push(s(e)+4)}}),b.selectAll("g").each(function(e,t){if(s(e)L[1])e>1e-10||e<-1e-10?d3.select(this).remove():d3.select(this).select("text").remove()})}a&&b.selectAll(".tick").filter(function(e){return!parseFloat(Math.round(e.__data__*1e5)/1e6)&&e.__data__!==undefined}).classed("zero",!0),v=s.copy()}),m}var t=d3.svg.axis(),n={top:0,right:0,bottom:0,left:0},r=75,i=60,s=d3.scale.linear(),o=null,u=!0,a=!0,f=0,l=!0,c=!1,h=!1,p=null,d=12;t.scale(s).orient("bottom").tickFormat(function(e){return e});var v;return m.axis=t,d3.rebind(m,t,"orient","tickValues","tickSubdivide","tickSize","tickPadding","tickFormat"),d3.rebind(m,s,"domain","range","rangeBand","rangeBands"),m.options=e.utils.optionsFunc.bind(m),m.margin=function(e){return arguments.length?(n.top=typeof e.top!="undefined"?e.top:n.top,n.right=typeof e.right!="undefined"?e.right:n.right,n.bottom=typeof e.bottom!="undefined"?e.bottom:n.bottom,n.left=typeof e.left!="undefined"?e.left:n.left,m):n},m.width=function(e){return arguments.length?(r=e,m):r},m.ticks=function(e){return arguments.length?(p=e,m):p},m.height=function(e){return arguments.length?(i=e,m):i},m.axisLabel=function(e){return arguments.length?(o=e,m):o},m.showMaxMin=function(e){return arguments.length?(u=e,m):u},m.highlightZero=function(e){return arguments.length?(a=e,m):a},m.scale=function(e){return arguments.length?(s=e,t.scale(s),h=typeof s.rangeBands=="function",d3.rebind(m,s,"domain","range","rangeBand","rangeBands"),m):s},m.rotateYLabel=function(e){return arguments.length?(l=e,m):l},m.rotateLabels=function(e){return arguments.length?(f=e,m):f},m.staggerLabels=function(e){return arguments.length?(c=e,m):c},m.axisLabelDistance=function(e){return arguments.length?(d=e,m):d},m},e.models.historicalBar=function(){function w(E){return E.each(function(w){var E=n-t.left-t.right,S=r-t.top-t.bottom,T=d3.select(this);s.domain(d||d3.extent(w[0].values.map(u).concat(f))),c?s.range(m||[E*.5/w[0].values.length,E*(w[0].values.length-.5)/w[0].values.length]):s.range(m||[0,E]),o.domain(v||d3.extent(w[0].values.map(a).concat(l))).range(g||[S,0]),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]-s.domain()[0]*.01,s.domain()[1]+s.domain()[1]*.01]):s.domain([-1,1])),o.domain()[0]===o.domain()[1]&&(o.domain()[0]?o.domain([o.domain()[0]+o.domain()[0]*.01,o.domain()[1]-o.domain()[1]*.01]):o.domain([-1,1]));var N=T.selectAll("g.nv-wrap.nv-historicalBar-"+i).data([w[0].values]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-historicalBar-"+i),k=C.append("defs"),L=C.append("g"),A=N.select("g");L.append("g").attr("class","nv-bars"),N.attr("transform","translate("+t.left+","+t.top+")"),T.on("click",function(e,t){y.chartClick({data:e,index:t,pos:d3.event,id:i})}),k.append("clipPath").attr("id","nv-chart-clip-path-"+i).append("rect"),N.select("#nv-chart-clip-path-"+i+" rect").attr("width",E).attr("height",S),A.attr("clip-path",h?"url(#nv-chart-clip-path-"+i+")":"");var O=N.select(".nv-bars").selectAll(".nv-bar").data(function(e){return e},function(e,t){return u(e,t)});O.exit().remove();var M=O.enter().append("rect").attr("x",0).attr("y",function(t,n){return e.utils.NaNtoZero(o(Math.max(0,a(t,n))))}).attr("height",function(t,n){return e.utils.NaNtoZero(Math.abs(o(a(t,n))-o(0)))}).attr("transform",function(e,t){return"translate("+(s(u(e,t))-E/w[0].values.length*.45)+",0)"}).on("mouseover",function(e,t){if(!b)return;d3.select(this).classed("hover",!0),y.elementMouseover({point:e,series:w[0],pos:[s(u(e,t)),o(a(e,t))],pointIndex:t,seriesIndex:0,e:d3.event})}).on("mouseout",function(e,t){if(!b)return;d3.select(this).classed("hover",!1),y.elementMouseout({point:e,series:w[0],pointIndex:t,seriesIndex:0,e:d3.event})}).on("click",function(e,t){if(!b)return;y.elementClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()}).on("dblclick",function(e,t){if(!b)return;y.elementDblClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()});O.attr("fill",function(e,t){return p(e,t)}).attr("class",function(e,t,n){return(a(e,t)<0?"nv-bar negative":"nv-bar positive")+" nv-bar-"+n+"-"+t}).attr("transform",function(e,t){return"translate("+(s(u(e,t))-E/w[0].values.length*.45)+",0)"}).attr("width",E/w[0].values.length*.9),O.attr("y",function(t,n){var r=a(t,n)<0?o(0):o(0)-o(a(t,n))<1?o(0)-1:o(a(t,n));return e.utils.NaNtoZero(r)}).attr("height",function(t,n){return e.utils.NaNtoZero(Math.max(Math.abs(o(a(t,n))-o(0)),1))})}),w}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[],l=[0],c=!1,h=!0,p=e.utils.defaultColor(),d,v,m,g,y=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),b=!0;return w.highlightPoint=function(e,t){d3.select(".nv-historicalBar-"+i).select(".nv-bars .nv-bar-0-"+e).classed("hover",t)},w.clearHighlights=function(){d3.select(".nv-historicalBar-"+i).select(".nv-bars .nv-bar.hover").classed("hover",!1)},w.dispatch=y,w.options=e.utils.optionsFunc.bind(w),w.x=function(e){return arguments.length?(u=e,w):u},w.y=function(e){return arguments.length?(a=e,w):a},w.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,w):t},w.width=function(e){return arguments.length?(n=e,w):n},w.height=function(e){return arguments.length?(r=e,w):r},w.xScale=function(e){return arguments.length?(s=e,w):s},w.yScale=function(e){return arguments.length?(o=e,w):o},w.xDomain=function(e){return arguments.length?(d=e,w):d},w.yDomain=function(e){return arguments.length?(v=e,w):v},w.xRange=function(e){return arguments.length?(m=e,w):m},w.yRange=function(e){return arguments.length?(g=e,w):g},w.forceX=function(e){return arguments.length?(f=e,w):f},w.forceY=function(e){return arguments.length?(l=e,w):l},w.padData=function(e){return arguments.length?(c=e,w):c},w.clipEdge=function(e){return arguments.length?(h=e,w):h},w.color=function(t){return arguments.length?(p=e.utils.getColor(t),w):p},w.id=function(e){return arguments.length?(i=e,w):i},w.interactive=function(e){return arguments.length?(b=!1,w):b},w},e.models.bullet=function(){function m(e){return e.each(function(e,n){var p=c-t.left-t.right,m=h-t.top-t.bottom,g=d3.select(this),y=i.call(this,e,n).slice().sort(d3.descending),b=s.call(this,e,n).slice().sort(d3.descending),w=o.call(this,e,n).slice().sort(d3.descending),E=u.call(this,e,n).slice(),S=a.call(this,e,n).slice(),x=f.call(this,e,n).slice(),T=d3.scale.linear().domain(d3.extent(d3.merge([l,y]))).range(r?[p,0]:[0,p]),N=this.__chart__||d3.scale.linear().domain([0,Infinity]).range(T.range());this.__chart__=T;var C=d3.min(y),k=d3.max(y),L=y[1],A=g.selectAll("g.nv-wrap.nv-bullet").data([e]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-bullet"),M=O.append("g"),_=A.select("g");M.append("rect").attr("class","nv-range nv-rangeMax"),M.append("rect").attr("class","nv-range nv-rangeAvg"),M.append("rect").attr("class","nv-range nv-rangeMin"),M.append("rect").attr("class","nv-measure"),M.append("path").attr("class","nv-markerTriangle"),A.attr("transform","translate("+t.left+","+t.top+")");var D=function(e){return Math.abs(N(e)-N(0))},P=function(e){return Math.abs(T(e)-T(0))},H=function(e){return e<0?N(e):N(0)},B=function(e){return e<0?T(e):T(0)};_.select("rect.nv-rangeMax").attr("height",m).attr("width",P(k>0?k:C)).attr("x",B(k>0?k:C)).datum(k>0?k:C),_.select("rect.nv-rangeAvg").attr("height",m).attr("width",P(L)).attr("x",B(L)).datum(L),_.select("rect.nv-rangeMin").attr("height",m).attr("width",P(k)).attr("x",B(k)).attr("width",P(k>0?C:k)).attr("x",B(k>0?C:k)).datum(k>0?C:k),_.select("rect.nv-measure").style("fill",d).attr("height",m/3).attr("y",m/3).attr("width",w<0?T(0)-T(w[0]):T(w[0])-T(0)).attr("x",B(w)).on("mouseover",function(){v.elementMouseover({value:w[0],label:x[0]||"Current",pos:[T(w[0]),m/2]})}).on("mouseout",function(){v.elementMouseout({value:w[0],label:x[0]||"Current"})});var j=m/6;b[0]?_.selectAll("path.nv-markerTriangle").attr("transform",function(e){return"translate("+T(b[0])+","+m/2+")"}).attr("d","M0,"+j+"L"+j+","+ -j+" "+ -j+","+ -j+"Z").on("mouseover",function(){v.elementMouseover({value:b[0],label:S[0]||"Previous",pos:[T(b[0]),m/2]})}).on("mouseout",function(){v.elementMouseout({value:b[0],label:S[0]||"Previous"})}):_.selectAll("path.nv-markerTriangle").remove(),A.selectAll(".nv-range").on("mouseover",function(e,t){var n=E[t]||(t?t==1?"Mean":"Minimum":"Maximum");v.elementMouseover({value:e,label:n,pos:[T(e),m/2]})}).on("mouseout",function(e,t){var n=E[t]||(t?t==1?"Mean":"Minimum":"Maximum");v.elementMouseout({value:e,label:n})})}),m}var t={top:0,right:0,bottom:0,left:0},n="left",r=!1,i=function(e){return e.ranges},s=function(e){return e.markers},o=function(e){return e.measures},u=function(e){return e.rangeLabels?e.rangeLabels:[]},a=function(e){return e.markerLabels?e.markerLabels:[]},f=function(e){return e.measureLabels?e.measureLabels:[]},l=[0],c=380,h=30,p=null,d=e.utils.getColor(["#1f77b4"]),v=d3.dispatch("elementMouseover","elementMouseout");return m.dispatch=v,m.options=e.utils.optionsFunc.bind(m),m.orient=function(e){return arguments.length?(n=e,r=n=="right"||n=="bottom",m):n},m.ranges=function(e){return arguments.length?(i=e,m):i},m.markers=function(e){return arguments.length?(s=e,m):s},m.measures=function(e){return arguments.length?(o=e,m):o},m.forceX=function(e){return arguments.length?(l=e,m):l},m.width=function(e){return arguments.length?(c=e,m):c},m.height=function(e){return arguments.length?(h=e,m):h},m.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,m):t},m.tickFormat=function(e){return arguments.length?(p=e,m):p},m.color=function(t){return arguments.length?(d=e.utils.getColor(t),m):d},m},e.models.bulletChart=function(){function m(e){return e.each(function(n,h){var g=d3.select(this),y=(a||parseInt(g.style("width"))||960)-i.left-i.right,b=f-i.top-i.bottom,w=this;m.update=function(){m(e)},m.container=this;if(!n||!s.call(this,n,h)){var E=g.selectAll(".nv-noData").data([p]);return E.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),E.attr("x",i.left+y/2).attr("y",18+i.top+b/2).text(function(e){return e}),m}g.selectAll(".nv-noData").remove();var S=s.call(this,n,h).slice().sort(d3.descending),x=o.call(this,n,h).slice().sort(d3.descending),T=u.call(this,n,h).slice().sort(d3.descending),N=g.selectAll("g.nv-wrap.nv-bulletChart").data([n]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-bulletChart"),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-bulletWrap"),k.append("g").attr("class","nv-titles"),N.attr("transform","translate("+i.left+","+i.top+")");var A=d3.scale.linear().domain([0,Math.max(S[0],x[0],T[0])]).range(r?[y,0]:[0,y]),O=this.__chart__||d3.scale.linear().domain([0,Infinity]).range(A.range());this.__chart__=A;var M=function(e){return Math.abs(O(e)-O(0))},_=function(e){return Math.abs(A(e)-A(0))},D=k.select(".nv-titles").append("g").attr("text-anchor","end").attr("transform","translate(-6,"+(f-i.top-i.bottom)/2+")");D.append("text").attr("class","nv-title").text(function(e){return e.title}),D.append("text").attr("class","nv-subtitle").attr("dy","1em").text(function(e){return e.subtitle}),t.width(y).height(b);var P=L.select(".nv-bulletWrap");d3.transition(P).call(t);var H=l||A.tickFormat(y/100),B=L.selectAll("g.nv-tick").data(A.ticks(y/50),function(e){return this.textContent||H(e)}),j=B.enter().append("g").attr("class","nv-tick").attr("transform",function(e){return"translate("+O(e)+",0)"}).style("opacity",1e-6);j.append("line").attr("y1",b).attr("y2",b*7/6),j.append("text").attr("text-anchor","middle").attr("dy","1em").attr("y",b*7/6).text(H);var F=d3.transition(B).attr("transform",function(e){return"translate("+A(e)+",0)"}).style("opacity",1);F.select("line").attr("y1",b).attr("y2",b*7/6),F.select("text").attr("y",b*7/6),d3.transition(B.exit()).attr("transform",function(e){return"translate("+A(e)+",0)"}).style("opacity",1e-6).remove(),d.on("tooltipShow",function(e){e.key=n.title,c&&v(e,w.parentNode)})}),d3.timer.flush(),m}var t=e.models.bullet(),n="left",r=!1,i={top:5,right:40,bottom:20,left:120},s=function(e){return e.ranges},o=function(e){return e.markers},u=function(e){return e.measures},a=null,f=55,l=null,c=!0,h=function(e,t,n,r,i){return"

    "+t+"

    "+"

    "+n+"

    "},p="No Data Available.",d=d3.dispatch("tooltipShow","tooltipHide"),v=function(t,n){var r=t.pos[0]+(n.offsetLeft||0)+i.left,s=t.pos[1]+(n.offsetTop||0)+i.top,o=h(t.key,t.label,t.value,t,m);e.tooltip.show([r,s],o,t.value<0?"e":"w",null,n)};return t.dispatch.on("elementMouseover.tooltip",function(e){d.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){d.tooltipHide(e)}),d.on("tooltipHide",function(){c&&e.tooltip.cleanup()}),m.dispatch=d,m.bullet=t,d3.rebind(m,t,"color"),m.options=e.utils.optionsFunc.bind(m),m.orient=function(e){return arguments.length?(n=e,r=n=="right"||n=="bottom",m):n},m.ranges=function(e){return arguments.length?(s=e,m):s},m.markers=function(e){return arguments.length?(o=e,m):o},m.measures=function(e){return arguments.length?(u=e,m):u},m.width=function(e){return arguments.length?(a=e,m):a},m.height=function(e){return arguments.length?(f=e,m):f},m.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.right=typeof e.right!="undefined"?e.right:i.right,i.bottom=typeof e.bottom!="undefined"?e.bottom:i.bottom,i.left=typeof e.left!="undefined"?e.left:i.left,m):i},m.tickFormat=function(e){return arguments.length?(l=e,m):l},m.tooltips=function(e){return arguments.length?(c=e,m):c},m.tooltipContent=function(e){return arguments.length?(h=e,m):h},m.noData=function(e){return arguments.length?(p=e,m):p},m},e.models.cumulativeLineChart=function(){function D(b){return b.each(function(b){function I(e,t){d3.select(D.container).style("cursor","ew-resize")}function q(e,t){M.x=d3.event.x,M.i=Math.round(O.invert(M.x)),nt()}function R(e,t){d3.select(D.container).style("cursor","auto"),x.index=M.i,k.stateChange(x)}function nt(){tt.data([M]);var e=D.transitionDuration();D.transitionDuration(0),D.update(),D.transitionDuration(e)}var L=d3.select(this).classed("nv-chart-"+S,!0),A=this,H=(f||parseInt(L.style("width"))||960)-u.left-u.right,B=(l||parseInt(L.style("height"))||400)-u.top-u.bottom;D.update=function(){L.call(D)},D.container=this,x.disabled=b.map(function(e){return!!e.disabled});if(!T){var j;T={};for(j in x)x[j]instanceof Array?T[j]=x[j].slice(0):T[j]=x[j]}var F=d3.behavior.drag().on("dragstart",I).on("drag",q).on("dragend",R);if(!b||!b.length||!b.filter(function(e){return e.values.length}).length){var U=L.selectAll(".nv-noData").data([N]);return U.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),U.attr("x",u.left+H/2).attr("y",u.top+B/2).text(function(e){return e}),D}L.selectAll(".nv-noData").remove(),w=t.xScale(),E=t.yScale();if(!y){var z=b.filter(function(e){return!e.disabled}).map(function(e,n){var r=d3.extent(e.values,t.y());return r[0]<-0.95&&(r[0]=-0.95),[(r[0]-r[1])/(1+r[1]),(r[1]-r[0])/(1+r[0])]}),W=[d3.min(z,function(e){return e[0]}),d3.max(z,function(e){return e[1]})];t.yDomain(W)}else t.yDomain(null);O.domain([0,b[0].values.length-1]).range([0,H]).clamp(!0);var b=P(M.i,b),X=g?"none":"all",V=L.selectAll("g.nv-wrap.nv-cumulativeLine").data([b]),$=V.enter().append("g").attr("class","nvd3 nv-wrap nv-cumulativeLine").append("g"),J=V.select("g");$.append("g").attr("class","nv-interactive"),$.append("g").attr("class","nv-x nv-axis").style("pointer-events","none"),$.append("g").attr("class","nv-y nv-axis"),$.append("g").attr("class","nv-background"),$.append("g").attr("class","nv-linesWrap").style("pointer-events",X),$.append("g").attr("class","nv-avgLinesWrap").style("pointer-events","none"),$.append("g").attr("class","nv-legendWrap"),$.append("g").attr("class","nv-controlsWrap"),c&&(i.width(H),J.select(".nv-legendWrap").datum(b).call(i),u.top!=i.height()&&(u.top=i.height(),B=(l||parseInt(L.style("height"))||400)-u.top-u.bottom),J.select(".nv-legendWrap").attr("transform","translate(0,"+ -u.top+")"));if(m){var K=[{key:"Re-scale y-axis",disabled:!y}];s.width(140).color(["#444","#444","#444"]).rightAlign(!1).margin({top:5,right:0,bottom:5,left:20}),J.select(".nv-controlsWrap").datum(K).attr("transform","translate(0,"+ -u.top+")").call(s)}V.attr("transform","translate("+u.left+","+u.top+")"),d&&J.select(".nv-y.nv-axis").attr("transform","translate("+H+",0)");var Q=b.filter(function(e){return e.tempDisabled});V.select(".tempDisabled").remove(),Q.length&&V.append("text").attr("class","tempDisabled").attr("x",H/2).attr("y","-.71em").style("text-anchor","end").text(Q.map(function(e){return e.key}).join(", ")+" values cannot be calculated for this time period."),g&&(o.width(H).height(B).margin({left:u.left,top:u.top}).svgContainer(L).xScale(w),V.select(".nv-interactive").call(o)),$.select(".nv-background").append("rect"),J.select(".nv-background rect").attr("width",H).attr("height",B),t.y(function(e){return e.display.y}).width(H).height(B).color(b.map(function(e,t){return e.color||a(e,t)}).filter(function(e,t){return!b[t].disabled&&!b[t].tempDisabled}));var G=J.select(".nv-linesWrap").datum(b.filter(function(e){return!e.disabled&&!e.tempDisabled}));G.call(t),b.forEach(function(e,t){e.seriesIndex=t});var Y=b.filter(function(e){return!e.disabled&&!!C(e)}),Z=J.select(".nv-avgLinesWrap").selectAll("line").data(Y,function(e){return e.key}),et=function(e){var t=E(C(e));return t<0?0:t>B?B:t};Z.enter().append("line").style("stroke-width",2).style("stroke-dasharray","10,10").style("stroke",function(e,n){return t.color()(e,e.seriesIndex)}).attr("x1",0).attr("x2",H).attr("y1",et).attr("y2",et),Z.style("stroke-opacity",function(e){var t=E(C(e));return t<0||t>B?0:1}).attr("x1",0).attr("x2",H).attr("y1",et).attr("y2",et),Z.exit().remove();var tt=G.selectAll(".nv-indexLine").data([M]);tt.enter().append("rect").attr("class","nv-indexLine").attr("width",3).attr("x",-2).attr("fill","red").attr("fill-opacity",.5).style("pointer-events","all").call(F),tt.attr("transform",function(e){return"translate("+O(e.i)+",0)"}).attr("height",B),h&&(n.scale(w).ticks(Math.min(b[0].values.length,H/70)).tickSize(-B,0),J.select(".nv-x.nv-axis").attr("transform","translate(0,"+E.range()[0]+")"),d3.transition(J.select(".nv-x.nv-axis")).call(n)),p&&(r.scale(E).ticks(B/36).tickSize(-H,0),d3.transition(J.select(".nv-y.nv-axis")).call(r)),J.select(".nv-background rect").on("click",function(){M.x=d3.mouse(this)[0],M.i=Math.round(O.invert(M.x)),x.index=M.i,k.stateChange(x),nt()}),t.dispatch.on("elementClick",function(e){M.i=e.pointIndex,M.x=O(M.i),x.index=M.i,k.stateChange(x),nt()}),s.dispatch.on("legendClick",function(e,t){e.disabled=!e.disabled,y=!e.disabled,x.rescaleY=y,k.stateChange(x),D.update()}),i.dispatch.on("stateChange",function(e){x.disabled=e.disabled,k.stateChange(x),D.update()}),o.dispatch.on("elementMousemove",function(i){t.clearHighlights();var s,f,l,c=[];b.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){f=e.interactiveBisect(n.values,i.pointXValue,D.x()),t.highlightPoint(r,f,!0);var o=n.values[f];if(typeof o=="undefined")return;typeof s=="undefined"&&(s=o),typeof l=="undefined"&&(l=D.xScale()(D.x()(o,f))),c.push({key:n.key,value:D.y()(o,f),color:a(n,n.seriesIndex)})});if(c.length>2){var h=D.yScale().invert(i.mouseY),p=Math.abs(D.yScale().domain()[0]-D.yScale().domain()[1]),d=.03*p,m=e.nearestValueIndex(c.map(function(e){return e.value}),h,d);m!==null&&(c[m].highlight=!0)}var g=n.tickFormat()(D.x()(s,f),f);o.tooltip.position({left:l+u.left,top:i.mouseY+u.top}).chartContainer(A.parentNode).enabled(v).valueFormatter(function(e,t){return r.tickFormat()(e)}).data({value:g,series:c})(),o.renderGuideLine(l)}),o.dispatch.on("elementMouseout",function(e){k.tooltipHide(),t.clearHighlights()}),k.on("tooltipShow",function(e){v&&_(e,A.parentNode)}),k.on("changeState",function(e){typeof e.disabled!="undefined"&&(b.forEach(function(t,n){t.disabled=e.disabled[n]}),x.disabled=e.disabled),typeof e.index!="undefined"&&(M.i=e.index,M.x=O(M.i),x.index=e.index,tt.data([M])),typeof e.rescaleY!="undefined"&&(y=e.rescaleY),D.update()})}),D}function P(e,n){return n.map(function(n,r){if(!n.values)return n;var i=n.values[e];if(i==null)return n;var s=t.y()(i,e);return s<-0.95&&!A?(n.tempDisabled=!0,n):(n.tempDisabled=!1,n.values=n.values.map(function(e,n){return e.display={y:(t.y()(e,n)-s)/(1+s)},e}),n)})}var t=e.models.line(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.interactiveGuideline(),u={top:30,right:30,bottom:50,left:60},a=e.utils.defaultColor(),f=null,l=null,c=!0,h=!0,p=!0,d=!1,v=!0,m=!0,g=!1,y=!0,b=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},w,E,S=t.id(),x={index:0,rescaleY:y},T=null,N="No Data Available.",C=function(e){return e.average},k=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),L=0,A=!1;n.orient("bottom").tickPadding(7),r.orient(d?"right":"left"),s.updateState(!1);var O=d3.scale.linear(),M={i:0,x:0},_=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=b(i.series.key,a,f,i,D);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],k.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){k.tooltipHide(e)}),k.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),D.dispatch=k,D.lines=t,D.legend=i,D.xAxis=n,D.yAxis=r,D.interactiveLayer=o,d3.rebind(D,t,"defined","isArea","x","y","xScale","yScale","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","useVoronoi","id"),D.options=e.utils.optionsFunc.bind(D),D.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,D):u},D.width=function(e){return arguments.length?(f=e,D):f},D.height=function(e){return arguments.length?(l=e,D):l},D.color=function(t){return arguments.length?(a=e.utils.getColor(t),i.color(a),D):a},D.rescaleY=function(e){return arguments.length?(y=e,D):y},D.showControls=function(e){return arguments.length?(m=e,D):m},D.useInteractiveGuideline=function(e){return arguments.length?(g=e,e===!0&&(D.interactive(!1),D.useVoronoi(!1)),D):g},D.showLegend=function(e){return arguments.length?(c=e,D):c},D.showXAxis=function(e){return arguments.length?(h=e,D):h},D.showYAxis=function(e){return arguments.length?(p=e,D):p},D.rightAlignYAxis=function(e){return arguments.length?(d=e,r.orient(e?"right":"left"),D):d},D.tooltips=function(e){return arguments.length?(v=e,D):v},D.tooltipContent=function(e){return arguments.length?(b=e,D):b},D.state=function(e){return arguments.length?(x=e,D):x},D.defaultState=function(e){return arguments.length?(T=e,D):T},D.noData=function(e){return arguments.length?(N=e,D):N},D.average=function(e){return arguments.length?(C=e,D):C},D.transitionDuration=function(e){return arguments.length?(L=e,D):L},D.noErrorCheck=function(e){return arguments.length?(A=e,D):A},D},e.models.discreteBar=function(){function E(e){return e.each(function(e){var i=n-t.left-t.right,E=r-t.top-t.bottom,S=d3.select(this);e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})});var T=p&&d?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0}})});s.domain(p||d3.merge(T).map(function(e){return e.x})).rangeBands(v||[0,i],.1),o.domain(d||d3.extent(d3.merge(T).map(function(e){return e.y}).concat(f))),c?o.range(m||[E-(o.domain()[0]<0?12:0),o.domain()[1]>0?12:0]):o.range(m||[E,0]),b=b||s,w=w||o.copy().range([o(0),o(0)]);var N=S.selectAll("g.nv-wrap.nv-discretebar").data([e]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-discretebar"),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-groups"),N.attr("transform","translate("+t.left+","+t.top+")");var A=N.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});A.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),A.exit().style("stroke-opacity",1e-6).style("fill-opacity",1e-6).remove(),A.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}),A.style("stroke-opacity",1).style("fill-opacity",.75);var O=A.selectAll("g.nv-bar").data(function(e){return e.values});O.exit().remove();var M=O.enter().append("g").attr("transform",function(e,t,n){return"translate("+(s(u(e,t))+s.rangeBand()*.05)+", "+o(0)+")"}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),g.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),g.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){g.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){g.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()});M.append("rect").attr("height",0).attr("width",s.rangeBand()*.9/e.length),c?(M.append("text").attr("text-anchor","middle"),O.select("text").text(function(e,t){return h(a(e,t))}).attr("x",s.rangeBand()*.9/2).attr("y",function(e,t){return a(e,t)<0?o(a(e,t))-o(0)+12:-4})):O.selectAll("text").remove(),O.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).style("fill",function(e,t){return e.color||l(e,t)}).style("stroke",function(e,t){return e.color||l(e,t)}).select("rect").attr("class",y).attr("width",s.rangeBand()*.9/e.length),O.attr("transform",function(e,t){var n=s(u(e,t))+s.rangeBand()*.05,r=a(e,t)<0?o(0):o(0)-o(a(e,t))<1?o(0)-1:o(a(e,t));return"translate("+n+", "+r+")"}).select("rect").attr("height",function(e,t){return Math.max(Math.abs(o(a(e,t))-o(d&&d[0]||0))||1)}),b=s.copy(),w=o.copy()}),E}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.ordinal(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=e.utils.defaultColor(),c=!1,h=d3.format(",.2f"),p,d,v,m,g=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),y="discreteBar",b,w;return E.dispatch=g,E.options=e.utils.optionsFunc.bind(E),E.x=function(e){return arguments.length?(u=e,E):u},E.y=function(e){return arguments.length?(a=e,E):a},E.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,E):t},E.width=function(e){return arguments.length?(n=e,E):n},E.height=function(e){return arguments.length?(r=e,E):r},E.xScale=function(e){return arguments.length?(s=e,E):s},E.yScale=function(e){return arguments.length?(o=e,E):o},E.xDomain=function(e){return arguments.length?(p=e,E):p},E.yDomain=function(e){return arguments.length?(d=e,E):d},E.xRange=function(e){return arguments.length?(v=e,E):v},E.yRange=function(e){return arguments.length?(m=e,E):m},E.forceY=function(e){return arguments.length?(f=e,E):f},E.color=function(t){return arguments.length?(l=e.utils.getColor(t),E):l},E.id=function(e){return arguments.length?(i=e,E):i},E.showValues=function(e){return arguments.length?(c=e,E):c},E.valueFormat=function(e){return arguments.length?(h=e,E):h},E.rectClass=function(e){return arguments.length?(y=e,E):y},E},e.models.discreteBarChart=function(){function w(e){return e.each(function(e){var u=d3.select(this),p=this,y=(s||parseInt(u.style("width"))||960)-i.left-i.right,E=(o||parseInt(u.style("height"))||400)-i.top-i.bottom;w.update=function(){g.beforeUpdate(),u.call(w)},w.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var S=u.selectAll(".nv-noData").data([m]);return S.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),S.attr("x",i.left+y/2).attr("y",i.top+E/2).text(function(e){return e}),w}u.selectAll(".nv-noData").remove(),d=t.xScale(),v=t.yScale().clamp(!0);var T=u.selectAll("g.nv-wrap.nv-discreteBarWithAxes").data([e]),N=T.enter().append("g").attr("class","nvd3 nv-wrap nv-discreteBarWithAxes").append("g"),C=N.append("defs"),k=T.select("g");N.append("g").attr("class","nv-x nv-axis"),N.append("g").attr("class","nv-y nv-axis").append("g").attr("class","nv-zeroLine").append("line"),N.append("g").attr("class","nv-barsWrap"),k.attr("transform","translate("+i.left+","+i.top+")"),l&&k.select(".nv-y.nv-axis").attr("transform","translate("+y+",0)"),t.width(y).height(E);var L=k.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));L.call(t),C.append("clipPath").attr("id","nv-x-label-clip-"+t.id()).append("rect"),k.select("#nv-x-label-clip-"+t.id()+" rect").attr("width",d.rangeBand()*(c?2:1)).attr("height",16).attr("x",-d.rangeBand()/(c?1:2));if(a){n.scale(d).ticks(y/100).tickSize(-E,0),k.select(".nv-x.nv-axis").attr("transform","translate(0,"+(v.range()[0]+(t.showValues()&&v.domain()[0]<0?16:0))+")"),k.select(".nv-x.nv-axis").call(n);var A=k.select(".nv-x.nv-axis").selectAll("g");c&&A.selectAll("text").attr("transform",function(e,t,n){return"translate(0,"+(n%2==0?"5":"17")+")"})}f&&(r.scale(v).ticks(E/36).tickSize(-y,0),k.select(".nv-y.nv-axis").call(r)),k.select(".nv-zeroLine line").attr("x1",0).attr("x2",y).attr("y1",v(0)).attr("y2",v(0)),g.on("tooltipShow",function(e){h&&b(e,p.parentNode)})}),w}var t=e.models.discreteBar(),n=e.models.axis(),r=e.models.axis(),i={top:15,right:10,bottom:50,left:60},s=null,o=null,u=e.utils.getColor(),a=!0,f=!0,l=!1,c=!1,h=!0,p=function(e,t,n,r,i){return"

    "+t+"

    "+"

    "+n+"

    "},d,v,m="No Data Available.",g=d3.dispatch("tooltipShow","tooltipHide","beforeUpdate"),y=0;n.orient("bottom").highlightZero(!1).showMaxMin(!1).tickFormat(function(e){return e}),r.orient(l?"right":"left").tickFormat(d3.format(",.1f"));var b=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=p(i.series.key,a,f,i,w);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+i.left,e.pos[1]+i.top],g.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){g.tooltipHide(e)}),g.on("tooltipHide",function(){h&&e.tooltip.cleanup()}),w.dispatch=g,w.discretebar=t,w.xAxis=n,w.yAxis=r,d3.rebind(w,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","id","showValues","valueFormat"),w.options=e.utils.optionsFunc.bind(w),w.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.right=typeof e.right!="undefined"?e.right:i.right,i.bottom=typeof e.bottom!="undefined"?e.bottom:i.bottom,i.left=typeof e.left!="undefined"?e.left:i.left,w):i},w.width=function(e){return arguments.length?(s=e,w):s},w.height=function(e){return arguments.length?(o=e,w):o},w.color=function(n){return arguments.length?(u=e.utils.getColor(n),t.color(u),w):u},w.showXAxis=function(e){return arguments.length?(a=e,w):a},w.showYAxis=function(e){return arguments.length?(f=e,w):f},w.rightAlignYAxis=function(e){return arguments.length?(l=e,r.orient(e?"right":"left"),w):l},w.staggerLabels=function(e){return arguments.length?(c=e,w):c},w.tooltips=function(e){return arguments.length?(h=e,w):h},w.tooltipContent=function(e){return arguments.length?(p=e,w):p},w.noData=function(e){return arguments.length?(m=e,w):m},w.transitionDuration=function(e){return arguments.length?(y=e,w):y},w},e.models.distribution=function(){function l(e){return e.each(function(e){var a=n-(i==="x"?t.left+t.right:t.top+t.bottom),l=i=="x"?"y":"x",c=d3.select(this);f=f||u;var h=c.selectAll("g.nv-distribution").data([e]),p=h.enter().append("g").attr("class","nvd3 nv-distribution"),d=p.append("g"),v=h.select("g");h.attr("transform","translate("+t.left+","+t.top+")");var m=v.selectAll("g.nv-dist").data(function(e){return e},function(e){return e.key});m.enter().append("g"),m.attr("class",function(e,t){return"nv-dist nv-series-"+t}).style("stroke",function(e,t){return o(e,t)});var g=m.selectAll("line.nv-dist"+i).data(function(e){return e.values});g.enter().append("line").attr(i+"1",function(e,t){return f(s(e,t))}).attr(i+"2",function(e,t){return f(s(e,t))}),m.exit().selectAll("line.nv-dist"+i).attr(i+"1",function(e,t){return u(s(e,t))}).attr(i+"2",function(e,t){return u(s(e,t))}).style("stroke-opacity",0).remove(),g.attr("class",function(e,t){return"nv-dist"+i+" nv-dist"+i+"-"+t}).attr(l+"1",0).attr(l+"2",r),g.attr(i+"1",function(e,t){return u(s(e,t))}).attr(i+"2",function(e,t){return u(s(e,t))}),f=u.copy()}),l}var t={top:0,right:0,bottom:0,left:0},n=400,r=8,i="x",s=function(e){return e[i]},o=e.utils.defaultColor(),u=d3.scale.linear(),a,f;return l.options=e.utils.optionsFunc.bind(l),l.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,l):t},l.width=function(e){return arguments.length?(n=e,l):n},l.axis=function(e){return arguments.length?(i=e,l):i},l.size=function(e){return arguments.length?(r=e,l):r},l.getData=function(e){return arguments.length?(s=d3.functor(e),l):s},l.scale=function(e){return arguments.length?(u=e,l):u},l.color=function(t){return arguments.length?(o=e.utils.getColor(t),l):o},l},e.models.historicalBarChart=function(){function x(e){return e.each(function(d){var E=d3.select(this),T=this,N=(u||parseInt(E.style("width"))||960)-s.left-s.right,C=(a||parseInt(E.style("height"))||400)-s.top-s.bottom;x.update=function(){E.call(x)},x.container=this,g.disabled=d.map(function(e){return!!e.disabled});if(!y){var k;y={};for(k in g)g[k]instanceof Array?y[k]=g[k].slice(0):y[k]=g[k]}if(!d||!d.length||!d.filter(function(e){return e.values.length}).length){var L=E.selectAll(".nv-noData").data([b]);return L.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),L.attr("x",s.left+N/2).attr("y",s.top+C/2).text(function(e){return e}),x}E.selectAll(".nv-noData").remove(),v=t.xScale(),m=t.yScale();var A=E.selectAll("g.nv-wrap.nv-historicalBarChart").data([d]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-historicalBarChart").append("g"),M=A.select("g");O.append("g").attr("class","nv-x nv-axis"),O.append("g").attr("class","nv-y nv-axis"),O.append("g").attr("class","nv-barsWrap"),O.append("g").attr("class","nv-legendWrap"),f&&(i.width(N),M.select(".nv-legendWrap").datum(d).call(i),s.top!=i.height()&&(s.top=i.height(),C=(a||parseInt(E.style("height"))||400)-s.top-s.bottom),A.select(".nv-legendWrap").attr("transform","translate(0,"+ -s.top+")")),A.attr("transform","translate("+s.left+","+s.top+")"),h&&M.select(".nv-y.nv-axis").attr("transform","translate("+N+",0)"),t.width(N).height(C).color(d.map(function(e,t){return e.color||o(e,t)}).filter(function(e,t){return!d[t].disabled}));var _=M.select(".nv-barsWrap").datum(d.filter(function(e){return!e.disabled}));_.call(t),l&&(n.scale(v).tickSize(-C,0),M.select(".nv-x.nv-axis").attr("transform","translate(0,"+m.range()[0]+")"),M.select(".nv-x.nv-axis").call(n)),c&&(r.scale(m).ticks(C/36).tickSize(-N,0),M.select(".nv-y.nv-axis").call(r)),i.dispatch.on("legendClick",function(t,n){t.disabled=!t.disabled,d.filter(function(e){return!e.disabled}).length||d.map(function(e){return e.disabled=!1,A.selectAll(".nv-series").classed("disabled",!1),e}),g.disabled=d.map(function(e){return!!e.disabled}),w.stateChange(g),e.call(x)}),i.dispatch.on("legendDblclick",function(e){d.forEach(function(e){e.disabled=!0}),e.disabled=!1,g.disabled=d.map(function(e){return!!e.disabled}),w.stateChange(g),x.update()}),w.on("tooltipShow",function(e){p&&S(e,T.parentNode)}),w.on("changeState",function(e){typeof e.disabled!="undefined"&&(d.forEach(function(t,n){t.disabled=e.disabled[n]}),g.disabled=e.disabled),x.update()})}),x}var t=e.models.historicalBar(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s={top:30,right:90,bottom:50,left:90},o=e.utils.defaultColor(),u=null,a=null,f=!1,l=!0,c=!0,h=!1,p=!0,d=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},v,m,g={},y=null,b="No Data Available.",w=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),E=0;n.orient("bottom").tickPadding(7),r.orient(h?"right":"left");var S=function(i,s){if(s){var o=d3.select(s).select("svg"),u=o.node()?o.attr("viewBox"):null;if(u){u=u.split(" ");var a=parseInt(o.style("width"))/u[2];i.pos[0]=i.pos[0]*a,i.pos[1]=i.pos[1]*a}}var f=i.pos[0]+(s.offsetLeft||0),l=i.pos[1]+(s.offsetTop||0),c=n.tickFormat()(t.x()(i.point,i.pointIndex)),h=r.tickFormat()(t.y()(i.point,i.pointIndex)),p=d(i.series.key,c,h,i,x);e.tooltip.show([f,l],p,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+s.left,e.pos[1]+s.top],w.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){w.tooltipHide(e)}),w.on("tooltipHide",function(){p&&e.tooltip.cleanup()}),x.dispatch=w,x.bars=t,x.legend=i,x.xAxis=n,x.yAxis=r,d3.rebind(x,t,"defined","isArea","x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id","interpolate","highlightPoint","clearHighlights","interactive"),x.options=e.utils.optionsFunc.bind(x),x.margin=function(e){return arguments.length?(s.top=typeof e.top!="undefined"?e.top:s.top,s.right=typeof e.right!="undefined"?e.right:s.right,s.bottom=typeof e.bottom!="undefined"?e.bottom:s.bottom,s.left=typeof e.left!="undefined"?e.left:s.left,x):s},x.width=function(e){return arguments.length?(u=e,x):u},x.height=function(e){return arguments.length?(a=e,x):a},x.color=function(t){return arguments.length?(o=e.utils.getColor(t),i.color(o),x):o},x.showLegend=function(e){return arguments.length?(f=e,x):f},x.showXAxis=function(e){return arguments.length?(l=e,x):l},x.showYAxis=function(e){return arguments.length?(c=e,x):c},x.rightAlignYAxis=function(e){return arguments.length?(h=e,r.orient(e?"right":"left"),x):h},x.tooltips=function(e){return arguments.length?(p=e,x):p},x.tooltipContent=function(e){return arguments.length?(d=e,x):d},x.state=function(e){return arguments.length?(g=e,x):g},x.defaultState=function(e){return arguments.length?(y=e,x):y},x.noData=function(e){return arguments.length?(b=e,x):b},x.transitionDuration=function(e){return arguments.length?(E=e,x):E},x},e.models.indentedTree=function(){function g(e){return e.each(function(e){function k(e,t,n){d3.event.stopPropagation();if(d3.event.shiftKey&&!n)return d3.event.shiftKey=!1,e.values&&e.values.forEach(function(e){(e.values||e._values)&&k(e,0,!0)}),!0;if(!O(e))return!0;e.values?(e._values=e.values,e.values=null):(e.values=e._values,e._values=null),g.update()}function L(e){return e._values&&e._values.length?h:e.values&&e.values.length?p:""}function A(e){return e._values&&e._values.length}function O(e){var t=e.values||e._values;return t&&t.length}var t=1,n=d3.select(this),i=d3.layout.tree().children(function(e){return e.values}).size([r,f]);g.update=function(){n.call(g)},e[0]||(e[0]={key:a});var s=i.nodes(e[0]),y=d3.select(this).selectAll("div").data([[s]]),b=y.enter().append("div").attr("class","nvd3 nv-wrap nv-indentedtree"),w=b.append("table"),E=y.select("table").attr("width","100%").attr("class",c);if(o){var S=w.append("thead"),x=S.append("tr");l.forEach(function(e){x.append("th").attr("width",e.width?e.width:"10%").style("text-align",e.type=="numeric"?"right":"left").append("span").text(e.label)})}var T=E.selectAll("tbody").data(function(e){return e});T.enter().append("tbody"),t=d3.max(s,function(e){return e.depth}),i.size([r,t*f]);var N=T.selectAll("tr").data(function(e){return e.filter(function(e){return u&&!e.children?u(e):!0})},function(e,t){return e.id||e.id||++m});N.exit().remove(),N.select("img.nv-treeicon").attr("src",L).classed("folded",A);var C=N.enter().append("tr");l.forEach(function(e,t){var n=C.append("td").style("padding-left",function(e){return(t?0:e.depth*f+12+(L(e)?0:16))+"px"},"important").style("text-align",e.type=="numeric"?"right":"left");t==0&&n.append("img").classed("nv-treeicon",!0).classed("nv-folded",A).attr("src",L).style("width","14px").style("height","14px").style("padding","0 1px").style("display",function(e){return L(e)?"inline-block":"none"}).on("click",k),n.each(function(n){!t&&v(n)?d3.select(this).append("a").attr("href",v).attr("class",d3.functor(e.classes)).append("span"):d3.select(this).append("span"),d3.select(this).select("span").attr("class",d3.functor(e.classes)).text(function(t){return e.format?t[e.key]?e.format(t[e.key]):"-":t[e.key]||"-"})}),e.showCount&&(n.append("span").attr("class","nv-childrenCount"),N.selectAll("span.nv-childrenCount").text(function(e){return e.values&&e.values.length||e._values&&e._values.length?"("+(e.values&&e.values.filter(function(e){return u?u(e):!0}).length||e._values&&e._values.filter(function(e){return u?u(e):!0}).length||0)+")":""}))}),N.order().on("click",function(e){d.elementClick({row:this,data:e,pos:[e.x,e.y]})}).on("dblclick",function(e){d.elementDblclick({row:this,data:e,pos:[e.x,e.y]})}).on("mouseover",function(e){d.elementMouseover({row:this,data:e,pos:[e.x,e.y]})}).on("mouseout",function(e){d.elementMouseout({row:this,data:e,pos:[e.x,e.y]})})}),g}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=e.utils.defaultColor(),s=Math.floor(Math.random()*1e4),o=!0,u=!1,a="No Data Available.",f=20,l=[{key:"key",label:"Name",type:"text"}],c=null,h="images/grey-plus.png",p="images/grey-minus.png",d=d3.dispatch("elementClick","elementDblclick","elementMouseover","elementMouseout"),v=function(e){return e.url},m=0;return g.options=e.utils.optionsFunc.bind(g),g.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,g):t},g.width=function(e){return arguments.length?(n=e,g):n},g.height=function(e){return arguments.length?(r=e,g):r},g.color=function(t){return arguments.length?(i=e.utils.getColor(t),scatter.color(i),g):i},g.id=function(e){return arguments.length?(s=e,g):s},g.header=function(e){return arguments.length?(o=e,g):o},g.noData=function(e){return arguments.length?(a=e,g):a},g.filterZero=function(e){return arguments.length?(u=e,g):u},g.columns=function(e){return arguments.length?(l=e,g):l},g.tableClass=function(e){return arguments.length?(c=e,g):c},g.iconOpen=function(e){return arguments.length?(h=e,g):h},g.iconClose=function(e){return arguments.length?(p=e,g):p},g.getUrl=function(e){return arguments.length?(v=e,g):v},g},e.models.legend=function(){function c(h){return h.each(function(c){var h=n-t.left-t.right,p=d3.select(this),d=p.selectAll("g.nv-legend").data([c]),v=d.enter().append("g").attr("class","nvd3 nv-legend").append("g"),m=d.select("g");d.attr("transform","translate("+t.left+","+t.top+")");var g=m.selectAll(".nv-series").data(function(e){return e}),y=g.enter().append("g").attr("class","nv-series").on("mouseover",function(e,t){l.legendMouseover(e,t)}).on("mouseout",function(e,t){l.legendMouseout(e,t)}).on("click",function(e,t){l.legendClick(e,t),a&&(f?(c.forEach(function(e){e.disabled=!0}),e.disabled=!1):(e.disabled=!e.disabled,c.every(function(e){return e.disabled})&&c.forEach(function(e){e.disabled=!1})),l.stateChange({disabled:c.map(function(e){return!!e.disabled})}))}).on("dblclick",function(e,t){l.legendDblclick(e,t),a&&(c.forEach(function(e){e.disabled=!0}),e.disabled=!1,l.stateChange({disabled:c.map(function(e){return!!e.disabled})}))});y.append("circle").style("stroke-width",2).attr("class","nv-legend-symbol").attr("r",5),y.append("text").attr("text-anchor","start").attr("class","nv-legend-text").attr("dy",".32em").attr("dx","8"),g.classed("disabled",function(e){return e.disabled}),g.exit().remove(),g.select("circle").style("fill",function(e,t){return e.color||s(e,t)}).style("stroke",function(e,t){return e.color||s(e,t)}),g.select("text").text(i);if(o){var b=[];g.each(function(t,n){var r=d3.select(this).select("text"),i;try{i=r.getComputedTextLength();if(i<=0)throw Error()}catch(s){i=e.utils.calcApproxTextWidth(r)}b.push(i+28)});var w=0,E=0,S=[];while(Eh&&w>1){S=[],w--;for(var x=0;x(S[x%w]||0)&&(S[x%w]=b[x]);E=S.reduce(function(e,t,n,r){return e+t})}var T=[];for(var N=0,C=0;NA&&(A=L),"translate("+O+","+k+")"}),m.attr("transform","translate("+(n-t.right-A)+","+t.top+")"),r=t.top+t.bottom+k+15}}),c}var t={top:5,right:0,bottom:5,left:0},n=400,r=20,i=function(e){return e.key},s=e.utils.defaultColor(),o=!0,u=!0,a=!0,f=!1,l=d3.dispatch("legendClick","legendDblclick","legendMouseover","legendMouseout","stateChange");return c.dispatch=l,c.options=e.utils.optionsFunc.bind(c),c.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,c):t},c.width=function(e){return arguments.length?(n=e,c):n},c.height=function(e){return arguments.length?(r=e,c):r},c.key=function(e){return arguments.length?(i=e,c):i},c.color=function(t){return arguments.length?(s=e.utils.getColor(t),c):s},c.align=function(e){return arguments.length?(o=e,c):o},c.rightAlign=function(e){return arguments.length?(u=e,c):u},c.updateState=function(e){return arguments.length?(a=e,c):a},c.radioButtonMode=function(e){return arguments.length?(f=e,c):f},c},e.models.line=function(){function m(g){return g.each(function(m){var g=r-n.left-n.right,b=i-n.top-n.bottom,w=d3.select(this);c=t.xScale(),h=t.yScale(),d=d||c,v=v||h;var E=w.selectAll("g.nv-wrap.nv-line").data([m]),S=E.enter().append("g").attr("class","nvd3 nv-wrap nv-line"),T=S.append("defs"),N=S.append("g"),C=E.select("g");N.append("g").attr("class","nv-groups"),N.append("g").attr("class","nv-scatterWrap"),E.attr("transform","translate("+n.left+","+n.top+")"),t.width(g).height(b);var k=E.select(".nv-scatterWrap");k.call(t),T.append("clipPath").attr("id","nv-edge-clip-"+t.id()).append("rect"),E.select("#nv-edge-clip-"+t.id()+" rect").attr("width",g).attr("height",b>0?b:0),C.attr("clip-path",l?"url(#nv-edge-clip-"+t.id()+")":""),k.attr("clip-path",l?"url(#nv-edge-clip-"+t.id()+")":"");var L=E.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});L.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),L.exit().remove(),L.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return s(e,t)}).style("stroke",function(e,t){return s(e,t)}),L.style("stroke-opacity",1).style("fill-opacity",.5);var A=L.selectAll("path.nv-area").data(function(e){return f(e)?[e]:[]});A.enter().append("path").attr("class","nv-area").attr("d",function(t){return d3.svg.area().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(d(o(t,n)))}).y0(function(t,n){return e.utils.NaNtoZero(v(u(t,n)))}).y1(function(e,t){return v(h.domain()[0]<=0?h.domain()[1]>=0?0:h.domain()[1]:h.domain()[0])}).apply(this,[t.values])}),L.exit().selectAll("path.nv-area").remove(),A.attr("d",function(t){return d3.svg.area().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(c(o(t,n)))}).y0(function(t,n){return e.utils.NaNtoZero(h(u(t,n)))}).y1(function(e,t){return h(h.domain()[0]<=0?h.domain()[1]>=0?0:h.domain()[1]:h.domain()[0])}).apply(this,[t.values])});var O=L.selectAll("path.nv-line").data(function(e){return[e.values]});O.enter().append("path").attr("class","nv-line").attr("d",d3.svg.line().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(d(o(t,n)))}).y(function(t,n){return e.utils.NaNtoZero(v(u(t,n)))})),O.attr("d",d3.svg.line().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(c(o(t,n)))}).y(function(t,n){return e.utils.NaNtoZero(h(u(t,n)))})),d=c.copy(),v=h.copy()}),m}var t=e.models.scatter(),n={top:0,right:0,bottom:0,left:0},r=960,i=500,s=e.utils.defaultColor(),o=function(e){return e.x},u=function(e){return e.y},a=function(e,t){return!isNaN(u(e,t))&&u(e,t)!==null},f=function(e){return e.area},l=!1,c,h,p="linear";t.size(16).sizeDomain([16,256]);var d,v;return m.dispatch=t.dispatch,m.scatter=t,d3.rebind(m,t,"id","interactive","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","forceX","forceY","forceSize","clipVoronoi","useVoronoi","clipRadius","padData","highlightPoint","clearHighlights"),m.options=e.utils.optionsFunc.bind(m),m.margin=function(e){return arguments.length?(n.top=typeof e.top!="undefined"?e.top:n.top,n.right=typeof e.right!="undefined"?e.right:n.right,n.bottom=typeof e.bottom!="undefined"?e.bottom:n.bottom,n.left=typeof e.left!="undefined"?e.left:n.left,m):n},m.width=function(e){return arguments.length?(r=e,m):r},m.height=function(e){return arguments.length?(i=e,m):i},m.x=function(e){return arguments.length?(o=e,t.x(e),m):o},m.y=function(e){return arguments.length?(u=e,t.y(e),m):u},m.clipEdge=function(e){return arguments.length?(l=e,m):l},m.color=function(n){return arguments.length?(s=e.utils.getColor(n),t.color(s),m):s},m.interpolate=function(e){return arguments.length?(p=e,m):p},m.defined=function(e){return arguments.length?(a=e,m):a},m.isArea=function(e){return arguments.length?(f=d3.functor(e),m):f},m},e.models.lineChart=function(){function N(m){return m.each(function(m){var x=d3.select(this),C=this,k=(a||parseInt(x.style("width"))||960)-o.left-o.right,L=(f||parseInt(x.style("height"))||400)-o.top-o.bottom;N.update=function(){x.call(N)},N.container=this,b.disabled=m.map(function(e){return!!e.disabled});if(!w){var A;w={};for(A in b)b[A]instanceof Array?w[A]=b[A].slice(0):w[A]=b[A]}if(!m||!m.length||!m.filter(function(e){return e.values.length}).length){var O=x.selectAll(".nv-noData").data([E]);return O.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),O.attr("x",o.left+k/2).attr("y",o.top+L/2).text(function(e){return e}),N}x.selectAll(".nv-noData").remove(),g=t.xScale(),y=t.yScale();var M=x.selectAll("g.nv-wrap.nv-lineChart").data([m]),_=M.enter().append("g").attr("class","nvd3 nv-wrap nv-lineChart").append("g"),D=M.select("g");_.append("rect").style("opacity",0),_.append("g").attr("class","nv-x nv-axis"),_.append("g").attr("class","nv-y nv-axis"),_.append("g").attr("class","nv-linesWrap"),_.append("g").attr("class","nv-legendWrap"),_.append("g").attr("class","nv-interactive"),D.select("rect").attr("width",k).attr("height",L>0?L:0),l&&(i.width(k),D.select(".nv-legendWrap").datum(m).call(i),o.top!=i.height()&&(o.top=i.height(),L=(f||parseInt(x.style("height"))||400)-o.top-o.bottom),M.select(".nv-legendWrap").attr("transform","translate(0,"+ -o.top+")")),M.attr("transform","translate("+o.left+","+o.top+")"),p&&D.select(".nv-y.nv-axis").attr("transform","translate("+k+",0)"),d&&(s.width(k).height(L).margin({left:o.left,top:o.top}).svgContainer(x).xScale(g),M.select(".nv-interactive").call(s)),t.width(k).height(L).color(m.map(function(e,t){return e.color||u(e,t)}).filter(function(e,t){return!m[t].disabled}));var P=D.select(".nv-linesWrap").datum(m.filter(function(e){return!e.disabled}));P.call(t),c&&(n.scale(g).ticks(k/100).tickSize(-L,0),D.select(".nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),D.select(".nv-x.nv-axis").call(n)),h&&(r.scale(y).ticks(L/36).tickSize(-k,0),D.select(".nv-y.nv-axis").call(r)),i.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),N.update()}),s.dispatch.on("elementMousemove",function(i){t.clearHighlights();var a,f,l,c=[];m.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){f=e.interactiveBisect(n.values,i.pointXValue,N.x()),t.highlightPoint(r,f,!0);var s=n.values[f];if(typeof s=="undefined")return;typeof a=="undefined"&&(a=s),typeof l=="undefined"&&(l=N.xScale()(N.x()(s,f))),c.push({key:n.key,value:N.y()(s,f),color:u(n,n.seriesIndex)})});if(c.length>2){var h=N.yScale().invert(i.mouseY),p=Math.abs(N.yScale().domain()[0]-N.yScale().domain()[1]),d=.03*p,g=e.nearestValueIndex(c.map(function(e){return e.value}),h,d);g!==null&&(c[g].highlight=!0)}var y=n.tickFormat()(N.x()(a,f));s.tooltip.position({left:l+o.left,top:i.mouseY+o.top}).chartContainer(C.parentNode).enabled(v).valueFormatter(function(e,t){return r.tickFormat()(e)}).data({value:y,series:c})(),s.renderGuideLine(l)}),s.dispatch.on("elementMouseout",function(e){S.tooltipHide(),t.clearHighlights()}),S.on("tooltipShow",function(e){v&&T(e,C.parentNode)}),S.on("changeState",function(e){typeof e.disabled!="undefined"&&m.length===e.disabled.length&&(m.forEach(function(t,n){t.disabled=e.disabled[n]}),b.disabled=e.disabled),N.update()})}),N}var t=e.models.line(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.interactiveGuideline(),o={top:30,right:20,bottom:50,left:60},u=e.utils.defaultColor(),a=null,f=null,l=!0,c=!0,h=!0,p=!1,d=!1,v=!0,m=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},g,y,b={},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),x=0;n.orient("bottom").tickPadding(7),r.orient(p?"right":"left");var T=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=m(i.series.key,a,f,i,N);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),N.dispatch=S,N.lines=t,N.legend=i,N.xAxis=n,N.yAxis=r,N.interactiveLayer=s,d3.rebind(N,t,"defined","isArea","x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","useVoronoi","id","interpolate"),N.options=e.utils.optionsFunc.bind(N),N.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,N):o},N.width=function(e){return arguments.length?(a=e,N):a},N.height=function(e){return arguments.length?(f=e,N):f},N.color=function(t){return arguments.length?(u=e.utils.getColor(t),i.color(u),N):u},N.showLegend=function(e){return arguments.length?(l=e,N):l},N.showXAxis=function(e){return arguments.length?(c=e,N):c},N.showYAxis=function(e){return arguments.length?(h=e,N):h},N.rightAlignYAxis=function(e){return arguments.length?(p=e,r.orient(e?"right":"left"),N):p},N.useInteractiveGuideline=function(e){return arguments.length?(d=e,e===!0&&(N.interactive(!1),N.useVoronoi(!1)),N):d},N.tooltips=function(e){return arguments.length?(v=e,N):v},N.tooltipContent=function(e){return arguments.length?(m=e,N):m},N.state=function(e){return arguments.length?(b=e,N):b},N.defaultState=function(e){return arguments.length?(w=e,N):w},N.noData=function(e){return arguments.length?(E=e,N):E},N.transitionDuration=function(e){return arguments.length?(x=e,N):x},N},e.models.linePlusBarChart=function(){function T(e){return e.each(function(e){var l=d3.select(this),c=this,v=(a||parseInt(l.style("width"))||960)-u.left-u.right,N=(f||parseInt(l.style("height"))||400)-u.top-u.bottom;T.update=function(){l.call(T)},b.disabled=e.map(function(e){return!!e.disabled});if(!w){var C;w={};for(C in b)b[C]instanceof Array?w[C]=b[C].slice(0):w[C]=b[C]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var k=l.selectAll(".nv-noData").data([E]);return k.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),k.attr("x",u.left+v/2).attr("y",u.top+N/2).text(function(e){return e}),T}l.selectAll(".nv-noData").remove();var L=e.filter(function(e){return!e.disabled&&e.bar}),A=e.filter(function(e){return!e.bar});m=A.filter(function(e){return!e.disabled}).length&&A.filter(function(e){return!e.disabled})[0].values.length?t.xScale():n.xScale(),g=n.yScale(),y=t.yScale();var O=d3.select(this).selectAll("g.nv-wrap.nv-linePlusBar").data([e]),M=O.enter().append("g").attr("class","nvd3 nv-wrap nv-linePlusBar").append("g"),_=O.select("g");M.append("g").attr("class","nv-x nv-axis"),M.append("g").attr("class","nv-y1 nv-axis"),M.append("g").attr("class","nv-y2 nv-axis"),M.append("g").attr("class","nv-barsWrap"),M.append("g").attr("class","nv-linesWrap"),M.append("g").attr("class","nv-legendWrap"),p&&(o.width(v/2),_.select(".nv-legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.bar?" (left axis)":" (right axis)"),e})).call(o),u.top!=o.height()&&(u.top=o.height(),N=(f||parseInt(l.style("height"))||400)-u.top-u.bottom),_.select(".nv-legendWrap").attr("transform","translate("+v/2+","+ -u.top+")")),O.attr("transform","translate("+u.left+","+u.top+")"),t.width(v).height(N).color(e.map(function(e,t){return e.color||h(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar})),n.width(v).height(N).color(e.map(function(e,t){return e.color||h(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar}));var D=_.select(".nv-barsWrap").datum(L.length?L:[{values:[]}]),P=_.select(".nv-linesWrap").datum(A[0]&&!A[0].disabled?A:[{values:[]}]);d3.transition(D).call(n),d3.transition(P).call(t),r.scale(m).ticks(v/100).tickSize(-N,0),_.select(".nv-x.nv-axis").attr("transform","translate(0,"+g.range()[0]+")"),d3.transition(_.select(".nv-x.nv-axis")).call(r),i.scale(g).ticks(N/36).tickSize(-v,0),d3.transition(_.select(".nv-y1.nv-axis")).style("opacity",L.length?1:0).call(i),s.scale(y).ticks(N/36).tickSize(L.length?0:-v,0),_.select(".nv-y2.nv-axis").style("opacity",A.length?1:0).attr("transform","translate("+v+",0)"),d3.transition(_.select(".nv-y2.nv-axis")).call(s),o.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),T.update()}),S.on("tooltipShow",function(e){d&&x(e,c.parentNode)}),S.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),b.disabled=t.disabled),T.update()})}),T}var t=e.models.line(),n=e.models.historicalBar(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.legend(),u={top:30,right:60,bottom:50,left:60},a=null,f=null,l=function(e){return e.x},c=function(e){return e.y},h=e.utils.defaultColor(),p=!0,d=!0,v=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},m,g,y,b={},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState");n.padData(!0),t.clipEdge(!1).padData(!0),r.orient("bottom").tickPadding(7).highlightZero(!1),i.orient("left"),s.orient("right");var x=function(n,o){var u=n.pos[0]+(o.offsetLeft||0),a=n.pos[1]+(o.offsetTop||0),f=r.tickFormat()(t.x()(n.point,n.pointIndex)),l=(n.series.bar?i:s).tickFormat()(t.y()(n.point,n.pointIndex)),c=v(n.series.key,f,l,n,T);e.tooltip.show([u,a],c,n.value<0?"n":"s",null,o)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),n.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],S.tooltipShow(e)}),n.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){d&&e.tooltip.cleanup()}),T.dispatch=S,T.legend=o,T.lines=t,T.bars=n,T.xAxis=r,T.y1Axis=i,T.y2Axis=s,d3.rebind(T,t,"defined","size","clipVoronoi","interpolate"),T.options=e.utils.optionsFunc.bind(T),T.x=function(e){return arguments.length?(l=e,t.x(e),n.x(e),T):l},T.y=function(e){return arguments.length?(c=e,t.y(e),n.y(e),T):c},T.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,T):u},T.width=function(e){return arguments.length?(a=e,T):a},T.height=function(e){return arguments.length?(f=e,T):f},T.color=function(t){return arguments.length?(h=e.utils.getColor(t),o.color(h),T):h},T.showLegend=function(e){return arguments.length?(p=e,T):p},T.tooltips=function(e){return arguments.length?(d=e,T):d},T.tooltipContent=function(e){return arguments.length?(v=e,T):v},T.state=function(e){return arguments.length?(b=e,T):b},T.defaultState=function(e){return arguments.length?(w=e,T):w},T.noData=function(e){return arguments.length?(E=e,T):E},T},e.models.lineWithFocusChart=function(){function k(e){return e.each(function(e){function R(e){var t=+(e=="e"),n=t?1:-1,r=O/3;return"M"+.5*n+","+r+"A6,6 0 0 "+t+" "+6.5*n+","+(r+6)+"V"+(2*r-6)+"A6,6 0 0 "+t+" "+.5*n+","+2*r+"Z"+"M"+2.5*n+","+(r+8)+"V"+(2*r-8)+"M"+4.5*n+","+(r+8)+"V"+(2*r-8)}function U(){a.empty()||a.extent(w),F.data([a.empty()?g.domain():w]).each(function(e,t){var n=g(e[0])-v.range()[0],r=v.range()[1]-g(e[1]);d3.select(this).select(".left").attr("width",n<0?0:n),d3.select(this).select(".right").attr("x",g(e[1])).attr("width",r<0?0:r)})}function z(){w=a.empty()?null:a.extent();var n=a.empty()?g.domain():a.extent();if(Math.abs(n[0]-n[1])<=1)return;T.brush({extent:n,brush:a}),U();var s=P.select(".nv-focus .nv-linesWrap").datum(e.filter(function(e){return!e.disabled}).map(function(e,r){return{key:e.key,values:e.values.filter(function(e,r){return t.x()(e,r)>=n[0]&&t.x()(e,r)<=n[1]})}}));s.call(t),P.select(".nv-focus .nv-x.nv-axis").call(r),P.select(".nv-focus .nv-y.nv-axis").call(i)}var S=d3.select(this),N=this,L=(h||parseInt(S.style("width"))||960)-f.left-f.right,A=(p||parseInt(S.style("height"))||400)-f.top-f.bottom-d,O=d-l.top-l.bottom;k.update=function(){S.call(k)},k.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var M=S.selectAll(".nv-noData").data([x]);return M.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),M.attr("x",f.left+L/2).attr("y",f.top+A/2).text(function(e){return e}),k}S.selectAll(".nv-noData").remove(),v=t.xScale(),m=t.yScale(),g=n.xScale(),y=n.yScale();var _=S.selectAll("g.nv-wrap.nv-lineWithFocusChart").data([e]),D=_.enter().append("g").attr("class","nvd3 nv-wrap nv-lineWithFocusChart").append("g"),P=_.select("g");D.append("g").attr("class","nv-legendWrap");var H=D.append("g").attr("class","nv-focus");H.append("g").attr("class","nv-x nv-axis"),H.append("g").attr("class","nv-y nv-axis"),H.append("g").attr("class","nv-linesWrap");var B=D.append("g").attr("class","nv-context");B.append("g").attr("class","nv-x nv-axis"),B.append("g").attr("class","nv-y nv-axis"),B.append("g").attr("class","nv-linesWrap"),B.append("g").attr("class","nv-brushBackground"),B.append("g").attr("class","nv-x nv-brush"),b&&(u.width(L),P.select(".nv-legendWrap").datum(e).call(u),f.top!=u.height()&&(f.top=u.height(),A=(p||parseInt(S.style("height"))||400)-f.top-f.bottom-d),P.select(".nv-legendWrap").attr("transform","translate(0,"+ -f.top+")")),_.attr("transform","translate("+f.left+","+f.top+")"),t.width(L).height(A).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),n.defined(t.defined()).width(L).height(O).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),P.select(".nv-context").attr("transform","translate(0,"+(A+f.bottom+l.top)+")");var j=P.select(".nv-context .nv-linesWrap").datum(e.filter(function(e){return!e.disabled}));d3.transition(j).call(n),r.scale(v).ticks(L/100).tickSize(-A,0),i.scale(m).ticks(A/36).tickSize(-L,0),P.select(".nv-focus .nv-x.nv-axis").attr("transform","translate(0,"+A+")"),a.x(g).on("brush",function(){var e=k.transitionDuration();k.transitionDuration(0),z(),k.transitionDuration(e)}),w&&a.extent(w);var F=P.select(".nv-brushBackground").selectAll("g").data([w||a.extent()]),I=F.enter().append("g");I.append("rect").attr("class","left").attr("x",0).attr("y",0).attr("height",O),I.append("rect").attr("class","right").attr("x",0).attr("y",0).attr("height",O);var q=P.select(".nv-x.nv-brush").call(a);q.selectAll("rect").attr("height",O),q.selectAll(".resize").append("path").attr("d",R),z(),s.scale(g).ticks(L/100).tickSize(-O,0),P.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),d3.transition(P.select(".nv-context .nv-x.nv-axis")).call(s),o.scale(y).ticks(O/36).tickSize(-L,0),d3.transition(P.select(".nv-context .nv-y.nv-axis")).call(o),P.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),u.dispatch.on("stateChange",function(e){k.update()}),T.on("tooltipShow",function(e){E&&C(e,N.parentNode)})}),k}var t=e.models.line(),n=e.models.line(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.axis(),u=e.models.legend(),a=d3.svg.brush(),f={top:30,right:30,bottom:30,left:60},l={top:0,right:30,bottom:20,left:60},c=e.utils.defaultColor(),h=null,p=null,d=100,v,m,g,y,b=!0,w=null,E=!0,S=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},x="No Data Available.",T=d3.dispatch("tooltipShow","tooltipHide","brush"),N=0;t.clipEdge(!0),n.interactive(!1),r.orient("bottom").tickPadding(5),i.orient("left"),s.orient("bottom").tickPadding(5),o.orient("left");var C=function(n,s){var o=n.pos[0]+(s.offsetLeft||0),u=n.pos[1]+(s.offsetTop||0),a=r.tickFormat()(t.x()(n.point,n.pointIndex)),f=i.tickFormat()(t.y()(n.point,n.pointIndex)),l=S(n.series.key,a,f,n,k);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+f.left,e.pos[1]+f.top],T.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){E&&e.tooltip.cleanup()}),k.dispatch=T,k.legend=u,k.lines=t,k.lines2=n,k.xAxis=r,k.yAxis=i,k.x2Axis=s,k.y2Axis=o,d3.rebind(k,t,"defined","isArea","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id"),k.options=e.utils.optionsFunc.bind(k),k.x=function(e){return arguments.length?(t.x(e),n.x(e),k):t.x},k.y=function(e){return arguments.length?(t.y(e),n.y(e),k):t.y},k.margin=function(e){return arguments.length?(f.top=typeof e.top!="undefined"?e.top:f.top,f.right=typeof e.right!="undefined"?e.right:f.right,f.bottom=typeof e.bottom!="undefined"?e.bottom:f.bottom,f.left=typeof e.left!="undefined"?e.left:f.left,k):f},k.margin2=function(e){return arguments.length?(l=e,k):l},k.width=function(e){return arguments.length?(h=e,k):h},k.height=function(e){return arguments.length?(p=e,k):p},k.height2=function(e){return arguments.length?(d=e,k):d},k.color=function(t){return arguments.length?(c=e.utils.getColor(t),u.color(c),k):c},k.showLegend=function(e){return arguments.length?(b=e,k):b},k.tooltips=function(e){return arguments.length?(E=e,k):E},k.tooltipContent=function(e){return arguments.length?(S=e,k):S},k.interpolate=function(e){return arguments.length?(t.interpolate(e),n.interpolate(e),k):t.interpolate()},k.noData=function(e){return arguments.length?(x=e,k):x},k.xTickFormat=function(e){return arguments.length?(r.tickFormat(e),s.tickFormat(e),k):r.tickFormat()},k.yTickFormat=function(e){return arguments.length?(i.tickFormat(e),o.tickFormat(e),k):i.tickFormat()},k.brushExtent=function(e){return arguments.length?(w=e,k):w},k.transitionDuration=function(e){return arguments.length?(N=e,k):N},k},e.models.linePlusBarWithFocusChart=function(){function B(e){return e.each(function(e){function tt(e){var t=+(e=="e"),n=t?1:-1,r=I/3;return"M"+.5*n+","+r+"A6,6 0 0 "+t+" "+6.5*n+","+(r+6)+"V"+(2*r-6)+"A6,6 0 0 "+t+" "+.5*n+","+2*r+"Z"+"M"+2.5*n+","+(r+8)+"V"+(2*r-8)+"M"+4.5*n+","+(r+8)+"V"+(2*r-8)}function nt(){h.empty()||h.extent(x),Y.data([h.empty()?k.domain():x]).each(function(e,t){var n=k(e[0])-k.range()[0],r=k.range()[1]-k(e[1]);d3.select(this).select(".left").attr("width",n<0?0:n),d3.select(this).select(".right").attr("x",k(e[1])).attr("width",r<0?0:r)})}function rt(){x=h.empty()?null:h.extent(),S=h.empty()?k.domain():h.extent(),D.brush({extent:S,brush:h}),nt(),r.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar})),t.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar}));var n=$.select(".nv-focus .nv-barsWrap").datum(R.length?R.map(function(e,t){return{key:e.key,values:e.values.filter(function(e,t){return r.x()(e,t)>=S[0]&&r.x()(e,t)<=S[1]})}}):[{values:[]}]),i=$.select(".nv-focus .nv-linesWrap").datum(U[0].disabled?[{values:[]}]:U.map(function(e,n){return{key:e.key,values:e.values.filter(function(e,n){return t.x()(e,n)>=S[0]&&t.x()(e,n)<=S[1]})}}));R.length?C=r.xScale():C=t.xScale(),s.scale(C).ticks(j/100).tickSize(-F,0),s.domain([Math.ceil(S[0]),Math.floor(S[1])]),$.select(".nv-x.nv-axis").call(s),n.call(r),i.call(t),$.select(".nv-focus .nv-x.nv-axis").attr("transform","translate(0,"+L.range()[0]+")"),u.scale(L).ticks(F/36).tickSize(-j,0),$.select(".nv-focus .nv-y1.nv-axis").style("opacity",R.length?1:0),a.scale(A).ticks(F/36).tickSize(R.length?0:-j,0),$.select(".nv-focus .nv-y2.nv-axis").style("opacity",U.length?1:0).attr("transform","translate("+C.range()[1]+",0)"),$.select(".nv-focus .nv-y1.nv-axis").call(u),$.select(".nv-focus .nv-y2.nv-axis").call(a)}var N=d3.select(this),P=this,j=(v||parseInt(N.style("width"))||960)-p.left-p.right,F=(m||parseInt(N.style("height"))||400)-p.top-p.bottom-g,I=g-d.top-d.bottom;B.update=function(){N.call(B)},B.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var q=N.selectAll(".nv-noData").data([_]);return q.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),q.attr("x",p.left+j/2).attr("y",p.top+F/2).text(function(e){return e}),B}N.selectAll(".nv-noData").remove();var R=e.filter(function(e){return!e.disabled&&e.bar}),U=e.filter(function(e){return!e.bar});C=r.xScale(),k=o.scale(),L=r.yScale(),A=t.yScale(),O=i.yScale(),M=n.yScale();var z=e.filter(function(e){return!e.disabled&&e.bar}).map(function(e){return e.values.map(function(e,t){return{x:y(e,t),y:b(e,t)}})}),W=e.filter(function(e){return!e.disabled&&!e.bar}).map(function(e){return e.values.map(function(e,t){return{x:y(e,t),y:b(e,t)}})});C.range([0,j]),k.domain(d3.extent(d3.merge(z.concat(W)),function(e){return e.x})).range([0,j]);var X=N.selectAll("g.nv-wrap.nv-linePlusBar").data([e]),V=X.enter().append("g").attr("class","nvd3 nv-wrap nv-linePlusBar").append("g"),$=X.select("g");V.append("g").attr("class","nv-legendWrap");var J=V.append("g").attr("class","nv-focus");J.append("g").attr("class","nv-x nv-axis"),J.append("g").attr("class","nv-y1 nv-axis"),J.append("g").attr("class","nv-y2 nv-axis"),J.append("g").attr("class","nv-barsWrap"),J.append("g").attr("class","nv-linesWrap");var K=V.append("g").attr("class","nv-context");K.append("g").attr("class","nv-x nv-axis"),K.append("g").attr("class","nv-y1 nv-axis"),K.append("g").attr("class","nv-y2 nv-axis"),K.append("g").attr("class","nv-barsWrap"),K.append("g").attr("class","nv-linesWrap"),K.append("g").attr("class","nv-brushBackground"),K.append("g").attr("class","nv-x nv-brush"),E&&(c.width(j/2),$.select(".nv-legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.bar?" (left axis)":" (right axis)"),e})).call(c),p.top!=c.height()&&(p.top=c.height(),F=(m||parseInt(N.style("height"))||400)-p.top-p.bottom-g),$.select(".nv-legendWrap").attr("transform","translate("+j/2+","+ -p.top+")")),X.attr("transform","translate("+p.left+","+p.top+")"),i.width(j).height(I).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar})),n.width(j).height(I).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar}));var Q=$.select(".nv-context .nv-barsWrap").datum(R.length?R:[{values:[]}]),G=$.select(".nv-context .nv-linesWrap").datum(U[0].disabled?[{values:[]}]:U);$.select(".nv-context").attr("transform","translate(0,"+(F+p.bottom+d.top)+")"),Q.call(i),G.call(n),h.x(k).on("brush",rt),x&&h.extent(x);var Y=$.select(".nv-brushBackground").selectAll("g").data([x||h.extent()]),Z=Y.enter().append("g");Z.append("rect").attr("class","left").attr("x",0).attr("y",0).attr("height",I),Z.append("rect").attr("class","right").attr("x",0).attr("y",0).attr("height",I);var et=$.select(".nv-x.nv-brush").call(h);et.selectAll("rect").attr("height",I),et.selectAll(".resize").append("path").attr("d",tt),o.ticks(j/100).tickSize(-I,0),$.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+O.range()[0]+")"),$.select(".nv-context .nv-x.nv-axis").call(o),f.scale(O).ticks(I/36).tickSize(-j,0),$.select(".nv-context .nv-y1.nv-axis").style("opacity",R.length?1:0).attr("transform","translate(0,"+k.range()[0]+")"),$.select(".nv-context .nv-y1.nv-axis").call(f),l.scale(M).ticks(I/36).tickSize(R.length?0:-j,0),$.select(".nv-context .nv-y2.nv-axis").style("opacity",U.length?1:0).attr("transform","translate("+k.range()[1]+",0)"),$.select(".nv-context .nv-y2.nv-axis").call(l),c.dispatch.on("stateChange",function(e){B.update()}),D.on("tooltipShow",function(e){T&&H(e,P.parentNode)}),rt()}),B}var t=e.models.line(),n=e.models.line(),r=e.models.historicalBar(),i=e.models.historicalBar(),s=e.models.axis(),o=e.models.axis(),u=e.models.axis(),a=e.models.axis(),f=e.models.axis(),l=e.models.axis(),c=e.models.legend(),h=d3.svg.brush(),p={top:30,right:30,bottom:30,left:60},d={top:0,right:30,bottom:20,left:60},v=null,m=null,g=100,y=function(e){return e.x},b=function(e){return e.y},w=e.utils.defaultColor(),E=!0,S,x=null,T=!0,N=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},C,k,L,A,O,M,_="No Data Available.",D=d3.dispatch("tooltipShow","tooltipHide","brush"),P=0;t.clipEdge(!0),n.interactive(!1),s.orient("bottom").tickPadding(5),u.orient("left"),a.orient("right"),o.orient("bottom").tickPadding(5),f.orient("left"),l.orient("right");var H=function(n,r){S&&(n.pointIndex+=Math.ceil(S[0]));var i=n.pos[0]+(r.offsetLeft||0),o=n.pos[1]+(r.offsetTop||0),f=s.tickFormat()(t.x()(n.point,n.pointIndex)),l=(n.series.bar?u:a).tickFormat()(t.y()(n.point,n.pointIndex)),c=N(n.series.key,f,l,n,B);e.tooltip.show([i,o],c,n.value<0?"n":"s",null,r)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),r.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),r.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),D.on("tooltipHide",function(){T&&e.tooltip.cleanup()}),B.dispatch=D,B.legend=c,B.lines=t,B.lines2=n,B.bars=r,B.bars2=i,B.xAxis=s,B.x2Axis=o,B.y1Axis=u,B.y2Axis=a,B.y3Axis=f,B.y4Axis=l,d3.rebind(B,t,"defined","size","clipVoronoi","interpolate"),B.options=e.utils.optionsFunc.bind(B),B.x=function(e){return arguments.length?(y=e,t.x(e),r.x(e),B):y},B.y=function(e){return arguments.length?(b=e,t.y(e),r.y(e),B):b},B.margin=function(e){return arguments.length?(p.top=typeof e.top!="undefined"?e.top:p.top,p.right=typeof e.right!="undefined"?e.right:p.right,p.bottom=typeof e.bottom!="undefined"?e.bottom:p.bottom,p.left=typeof e.left!="undefined"?e.left:p.left,B):p},B.width=function(e){return arguments.length?(v=e,B):v},B.height=function(e){return arguments.length?(m=e,B):m},B.color=function(t){return arguments.length?(w=e.utils.getColor(t),c.color(w),B):w},B.showLegend=function(e){return arguments.length?(E=e,B):E},B.tooltips=function(e){return arguments.length?(T=e,B):T},B.tooltipContent=function(e){return arguments.length?(N=e,B):N},B.noData=function(e){return arguments.length?(_=e,B):_},B.brushExtent=function(e){return arguments.length?(x=e,B):x},B},e.models.multiBar=function(){function C(e){return e.each(function(e){var g=n-t.left-t.right,C=r-t.top-t.bottom,k=d3.select(this);d&&e.length&&(d=[{values:e[0].values.map(function(e){return{x:e.x,y:0,series:e.series,size:.01}})}]),c&&(e=d3.layout.stack().offset(h).values(function(e){return e.values}).y(a)(!e.length&&d?d:e)),e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})}),c&&e[0].values.map(function(t,n){var r=0,i=0;e.map(function(e){var t=e.values[n];t.size=Math.abs(t.y),t.y<0?(t.y1=i,i-=t.size):(t.y1=t.size+r,r+=t.size)})});var L=y&&b?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0,y1:e.y1}})});i.domain(y||d3.merge(L).map(function(e){return e.x})).rangeBands(w||[0,g],S),s.domain(b||d3.extent(d3.merge(L).map(function(e){return c?e.y>0?e.y1:e.y1+e.y:e.y}).concat(f))).range(E||[C,0]),i.domain()[0]===i.domain()[1]&&(i.domain()[0]?i.domain([i.domain()[0]-i.domain()[0]*.01,i.domain()[1]+i.domain()[1]*.01]):i.domain([-1,1])),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]+s.domain()[0]*.01,s.domain()[1]-s.domain()[1]*.01]):s.domain([-1,1])),T=T||i,N=N||s;var A=k.selectAll("g.nv-wrap.nv-multibar").data([e]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-multibar"),M=O.append("defs"),_=O.append("g"),D=A.select("g");_.append("g").attr("class","nv-groups"),A.attr("transform","translate("+t.left+","+t.top+")"),M.append("clipPath").attr("id","nv-edge-clip-"+o).append("rect"),A.select("#nv-edge-clip-"+o+" rect").attr("width",g).attr("height",C),D.attr("clip-path",l?"url(#nv-edge-clip-"+o+")":"");var P=A.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e,t){return t});P.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),P.exit().selectAll("rect.nv-bar").attr("y",function(e){return c?N(e.y0):N(0)}).attr("height",0).remove(),P.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return p(e,t)}).style("stroke",function(e,t){return p(e,t)}),P.style("stroke-opacity",1).style("fill-opacity",.75);var H=P.selectAll("rect.nv-bar").data(function(t){return d&&!e.length?d.values:t.values});H.exit().remove();var B=H.enter().append("rect").attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).attr("x",function(t,n,r){return c?0:r*i.rangeBand()/e.length}).attr("y",function(e){return N(c?e.y0:0)}).attr("height",0).attr("width",i.rangeBand()/(c?1:e.length)).attr("transform",function(e,t){return"translate("+i(u(e,t))+",0)"});H.style("fill",function(e,t,n){return p(e,n,t)}).style("stroke",function(e,t,n){return p(e,n,t)}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),x.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),x.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){x.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){x.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}),H.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).attr("transform",function(e,t){return"translate("+i(u(e,t))+",0)"}),v&&(m||(m=e.map(function(){return!0})),H.style("fill",function(e,t,n){return d3.rgb(v(e,t)).darker(m.map(function(e,t){return t}).filter(function(e,t){return!m[t]})[n]).toString()}).style("stroke",function(e,t,n){return d3.rgb(v(e,t)).darker(m.map(function(e,t){return t}).filter(function(e,t){return!m[t]})[n]).toString()})),c?H.attr("y",function(e,t){return s(c?e.y1:0)}).attr("height",function(e,t){return Math.max(Math.abs(s(e.y+(c?e.y0:0))-s(c?e.y0:0)),1)}).attr("x",function(t,n){return c?0:t.series*i.rangeBand()/e.length}).attr("width",i.rangeBand()/(c?1:e.length)):H.attr("x",function(t,n){return t.series*i.rangeBand()/e.length}).attr("width",i.rangeBand()/e.length).attr("y",function(e,t){return a(e,t)<0?s(0):s(0)-s(a(e,t))<1?s(0)-1:s(a(e,t))||0}).attr("height",function(e,t){return Math.max(Math.abs(s(a(e,t))-s(0)),1)||0}),T=i.copy(),N=s.copy()}),C}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=d3.scale.ordinal(),s=d3.scale.linear(),o=Math.floor(Math.random()*1e4),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=!0,c=!1,h="zero",p=e.utils.defaultColor(),d=!1,v=null,m,g=1200,y,b,w,E,S=.1,x=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),T,N;return C.dispatch=x,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(u=e,C):u},C.y=function(e){return arguments.length?(a=e,C):a},C.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,C):t},C.width=function(e){return arguments.length?(n=e,C):n},C.height=function(e){return arguments.length?(r=e,C):r},C.xScale=function(e){return arguments.length?(i=e,C):i},C.yScale=function(e){return arguments.length?(s=e,C):s},C.xDomain=function(e){return arguments.length?(y=e,C):y},C.yDomain=function(e){return arguments.length?(b=e,C):b},C.xRange=function(e){return arguments.length?(w=e,C):w},C.yRange=function(e){return arguments.length?(E=e,C):E},C.forceY=function(e){return arguments.length?(f=e,C):f},C.stacked=function(e){return arguments.length?(c=e,C):c},C.stackOffset=function(e){return arguments.length?(h=e,C):h},C.clipEdge=function(e){return arguments.length?(l=e,C):l},C.color=function(t){return arguments.length?(p=e.utils.getColor(t),C):p},C.barColor=function(t){return arguments.length?(v=e.utils.getColor(t),C):v},C.disabled=function(e){return arguments.length?(m=e,C):m},C.id=function(e){return arguments.length?(o=e,C):o},C.hideable=function(e){return arguments.length?(d=e,C):d},C.delay=function(e){return arguments.length?(g=e,C):g},C.groupSpacing=function(e){return arguments.length?(S=e,C):S},C},e.models.multiBarChart=function(){function A(e){return e.each(function(e){var b=d3.select(this),k=this,O=(u||parseInt(b.style("width"))||960)-o.left-o.right,M=(a||parseInt(b.style("height"))||400)-o.top-o.bottom;A.update=function(){b.call(A)},A.container=this,S.disabled=e.map(function(e){return!!e.disabled});if(!x){var _;x={};for(_ in S)S[_]instanceof Array?x[_]=S[_].slice(0):x[_]=S[_]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var D=b.selectAll(".nv-noData").data([T]);return D.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),D.attr("x",o.left+O/2).attr("y",o.top+M/2).text(function(e){return e}),A}b.selectAll(".nv-noData").remove(),w=t.xScale(),E=t.yScale();var P=b.selectAll("g.nv-wrap.nv-multiBarWithLegend").data([e]),H=P.enter().append("g").attr("class","nvd3 nv-wrap nv-multiBarWithLegend").append("g"),B=P.select("g");H.append("g").attr("class","nv-x nv-axis"),H.append("g").attr("class","nv-y nv-axis"),H.append("g").attr("class","nv-barsWrap"),H.append("g").attr("class","nv-legendWrap"),H.append("g").attr("class","nv-controlsWrap"),c&&(i.width(O-C()),t.barColor()&&e.forEach(function(e,t){e.color=d3.rgb("#ccc").darker(t*1.5).toString()}),B.select(".nv-legendWrap").datum(e).call(i),o.top!=i.height()&&(o.top=i.height(),M=(a||parseInt(b.style("height"))||400)-o.top-o.bottom),B.select(".nv-legendWrap").attr("transform","translate("+C()+","+ -o.top+")"));if(l){var j=[{key:"Grouped",disabled:t.stacked()},{key:"Stacked",disabled:!t.stacked()}];s.width(C()).color(["#444","#444","#444"]),B.select(".nv-controlsWrap").datum(j).attr("transform","translate(0,"+ -o.top+")").call(s)}P.attr("transform","translate("+o.left+","+o.top+")"),d&&B.select(".nv-y.nv-axis").attr("transform","translate("+O+",0)"),t.disabled(e.map(function(e){return e.disabled})).width(O).height(M).color(e.map(function(e,t){return e.color||f(e,t)}).filter(function(t,n){return!e[n].disabled}));var F=B.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));F.call(t);if(h){n.scale(w).ticks(O/100).tickSize(-M,0),B.select(".nv-x.nv-axis").attr("transform","translate(0,"+E.range()[0]+")"),B.select(".nv-x.nv-axis").call(n);var I=B.select(".nv-x.nv-axis > g").selectAll("g");I.selectAll("line, text").style("opacity",1);if(m){var q=function(e,t){return"translate("+e+","+t+")"},R=5,U=17;I.selectAll("text").attr("transform",function(e,t,n){return q(0,n%2==0?R:U)});var z=d3.selectAll(".nv-x.nv-axis .nv-wrap g g text")[0].length;B.selectAll(".nv-x.nv-axis .nv-axisMaxMin text").attr("transform",function(e,t){return q(0,t===0||z%2!==0?U:R)})}v&&I.filter(function(t,n){return n%Math.ceil(e[0].values.length/(O/100))!==0}).selectAll("text, line").style("opacity",0),g&&I.selectAll(".tick text").attr("transform","rotate("+g+" 0,0)").style("text-anchor",g>0?"start":"end"),B.select(".nv-x.nv-axis").selectAll("g.nv-axisMaxMin text").style("opacity",1)}p&&(r.scale(E).ticks(M/36).tickSize(-O,0),B.select(".nv-y.nv-axis").call(r)),i.dispatch.on("stateChange",function(e){S=e,N.stateChange(S),A.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;j=j.map(function(e){return e.disabled=!0,e}),e.disabled=!1;switch(e.key){case"Grouped":t.stacked(!1);break;case"Stacked":t.stacked(!0)}S.stacked=t.stacked(),N.stateChange(S),A.update()}),N.on("tooltipShow",function(e){y&&L(e,k.parentNode)}),N.on("changeState",function(n){typeof n.disabled!="undefined"&&(e.forEach(function(e,t){e.disabled=n.disabled[t]}),S.disabled=n.disabled),typeof n.stacked!="undefined"&&(t.stacked(n.stacked),S.stacked=n.stacked),A.update()})}),A}var t=e.models.multiBar(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o={top:30,right:20,bottom:50,left:60},u=null,a=null,f=e.utils.defaultColor(),l=!0,c=!0,h=!0,p=!0,d=!1,v=!0,m=!1,g=0,y=!0,b=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" on "+t+"

    "},w,E,S={stacked:!1},x=null,T="No Data Available.",N=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),C=function(){return l?180:0},k=0;t.stacked(!1),n.orient("bottom").tickPadding(7).highlightZero(!0).showMaxMin(!1).tickFormat(function(e){return e}),r.orient(d?"right":"left").tickFormat(d3.format(",.1f")),s.updateState(!1);var L=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=b(i.series.key,a,f,i,A);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],N.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){N.tooltipHide(e)}),N.on("tooltipHide",function(){y&&e.tooltip.cleanup()}),A.dispatch=N,A.multibar=t,A.legend=i,A.xAxis=n,A.yAxis=r,d3.rebind(A,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","stacked","stackOffset","delay","barColor","groupSpacing"),A.options=e.utils.optionsFunc.bind(A),A.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,A):o},A.width=function(e){return arguments.length?(u=e,A):u},A.height=function(e){return arguments.length?(a=e,A):a},A.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),A):f},A.showControls=function(e){return arguments.length?(l=e,A):l},A.showLegend=function(e){return arguments.length?(c=e,A):c},A.showXAxis=function(e){return arguments.length?(h=e,A):h},A.showYAxis=function(e){return arguments.length?(p=e,A):p},A.rightAlignYAxis=function(e){return arguments.length?(d=e,r.orient(e?"right":"left"),A):d},A.reduceXTicks=function(e){return arguments.length?(v=e,A):v},A.rotateLabels=function(e){return arguments.length?(g=e,A):g},A.staggerLabels=function(e){return arguments.length?(m=e,A):m},A.tooltip=function(e){return arguments.length?(b=e,A):b},A.tooltips=function(e){return arguments.length?(y=e,A):y},A.tooltipContent=function(e){return arguments.length?(b=e,A):b},A.state=function(e){return arguments.length?(S=e,A):S},A.defaultState=function(e){return arguments.length?(x=e,A):x},A.noData=function(e){return arguments.length?(T=e,A):T},A.transitionDuration=function(e){return arguments.length?(k=e,A):k},A},e.models.multiBarHorizontal=function(){function C(e){return e.each(function(e){var i=n-t.left-t.right,y=r-t.top-t.bottom,C=d3.select(this);p&&(e=d3.layout.stack().offset("zero").values(function(e){return e.values}).y(a)(e)),e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})}),p&&e[0].values.map(function(t,n){var r=0,i=0;e.map(function(e){var t=e.values[n];t.size=Math.abs(t.y),t.y<0?(t.y1=i-t.size,i-=t.size):(t.y1=r,r+=t.size)})});var k=b&&w?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0,y1:e.y1}})});s.domain(b||d3.merge(k).map(function(e){return e.x})).rangeBands(E||[0,y],.1),o.domain(w||d3.extent(d3.merge(k).map(function(e){return p?e.y>0?e.y1+e.y:e.y1:e.y}).concat(f))),d&&!p?o.range(S||[o.domain()[0]<0?m:0,i-(o.domain()[1]>0?m:0)]):o.range(S||[0,i]),T=T||s,N=N||d3.scale.linear().domain(o.domain()).range([o(0),o(0)]);var L=d3.select(this).selectAll("g.nv-wrap.nv-multibarHorizontal").data([e]),A=L.enter().append("g").attr("class","nvd3 nv-wrap nv-multibarHorizontal"),O=A.append("defs"),M=A.append("g"),_=L.select("g");M.append("g").attr("class","nv-groups"),L.attr("transform","translate("+t.left+","+t.top+")");var D=L.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e,t){return t});D.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),D.exit().style("stroke-opacity",1e-6).style("fill-opacity",1e-6).remove(),D.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return l(e,t)}).style("stroke",function(e,t){return l(e,t)}),D.style("stroke-opacity",1).style("fill-opacity",.75);var P=D.selectAll("g.nv-bar").data(function(e){return e.values});P.exit().remove();var H=P.enter().append("g").attr("transform",function(t,n,r){return"translate("+N(p?t.y0:0)+","+(p?0:r*s.rangeBand()/e.length+s(u(t,n)))+")"});H.append("rect").attr("width",0).attr("height",s.rangeBand()/(p?1:e.length)),P.on("mouseover",function(t,n){d3.select(this).classed("hover",!0),x.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[o(a(t,n)+(p?t.y0:0)),s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),x.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){x.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length,o(a(t,n)+(p?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){x.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length,o(a(t,n)+(p?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}),H.append("text"),d&&!p?(P.select("text").attr("text-anchor",function(e,t){return a(e,t)<0?"end":"start"}).attr("y",s.rangeBand()/(e.length*2)).attr("dy",".32em").text(function(e,t){return g(a(e,t))}),P.select("text").attr("x",function(e,t){return a(e,t)<0?-4:o(a(e,t))-o(0)+4})):P.selectAll("text").text(""),v&&!p?(H.append("text").classed("nv-bar-label",!0),P.select("text.nv-bar-label").attr("text-anchor",function(e,t){return a(e,t)<0?"start":"end"}).attr("y",s.rangeBand()/(e.length*2)).attr("dy",".32em").text(function(e,t){return u(e,t)}),P.select("text.nv-bar-label").attr("x",function(e,t){return a(e,t)<0?o(0)-o(a(e,t))+4:-4})):P.selectAll("text.nv-bar-label").text(""),P.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}),c&&(h||(h=e.map(function(){return!0})),P.style("fill",function(e,t,n){return d3.rgb(c(e,t)).darker(h.map(function(e,t){return t}).filter(function(e,t){return!h[t]})[n]).toString()}).style("stroke",function(e,t,n){return d3.rgb(c(e,t)).darker(h.map(function(e,t){return t}).filter(function(e,t){return!h[t]})[n]).toString()})),p?P.attr("transform",function(e,t){return"translate("+o(e.y1)+","+s(u(e,t))+")"}).select("rect").attr("width",function(e,t){return Math.abs(o(a(e,t)+e.y0)-o(e.y0))}).attr("height",s.rangeBand()):P.attr("transform",function(t,n){return"translate("+(a(t,n)<0?o(a(t,n)):o(0))+","+(t.series*s.rangeBand()/e.length+s(u(t,n)))+")"}).select("rect").attr("height",s.rangeBand()/e.length).attr("width",function(e,t){return Math.max(Math.abs(o(a(e,t))-o(0)),1)}),T=s.copy(),N=o.copy()}),C}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.ordinal(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=e.utils.defaultColor(),c=null,h,p=!1,d=!1,v=!1,m=60,g=d3.format(",.2f"),y=1200,b,w,E,S,x=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),T,N;return C.dispatch=x,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(u=e,C):u},C.y=function(e){return arguments.length?(a=e,C):a},C.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,C):t},C.width=function(e){return arguments.length?(n=e,C):n},C.height=function(e){return arguments.length?(r=e,C):r},C.xScale=function(e){return arguments.length?(s=e,C):s},C.yScale=function(e){return arguments.length?(o=e,C):o},C.xDomain=function(e){return arguments.length?(b=e,C):b},C.yDomain=function(e){return arguments.length?(w=e,C):w},C.xRange=function(e){return arguments.length?(E=e,C):E},C.yRange=function(e){return arguments.length?(S=e,C):S},C.forceY=function(e){return arguments.length?(f=e,C):f},C.stacked=function(e){return arguments.length?(p=e,C):p},C.color=function(t){return arguments.length?(l=e.utils.getColor(t),C):l},C.barColor=function(t){return arguments.length?(c=e.utils.getColor(t),C):c},C.disabled=function(e){return arguments.length?(h=e,C):h},C.id=function(e){return arguments.length?(i=e,C):i},C.delay=function(e){return arguments.length?(y=e,C):y},C.showValues=function(e){return arguments.length?(d=e,C):d},C.showBarLabels=function(e){return arguments.length?(v=e,C):v},C.valueFormat=function(e){return arguments.length?(g=e,C):g},C.valuePadding=function(e){return arguments.length?(m=e,C):m},C},e.models.multiBarHorizontalChart=function(){function C(e){return e.each(function(e){var d=d3.select(this),m=this,T=(u||parseInt(d.style("width"))||960)-o.left-o.right,k=(a||parseInt(d.style("height"))||400)-o.top-o.bottom;C.update=function(){d.call(C)},C.container=this,b.disabled=e.map(function(e){return!!e.disabled});if(!w){var L;w={};for(L in b)b[L]instanceof Array?w[L]=b[L].slice(0):w[L]=b[L]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var A=d.selectAll(".nv-noData").data([E]);return A.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),A.attr("x",o.left+T/2).attr("y",o.top+k/2).text(function(e){return e}),C}d.selectAll(".nv-noData").remove(),g=t.xScale(),y=t.yScale();var O=d.selectAll("g.nv-wrap.nv-multiBarHorizontalChart").data([e]),M=O.enter().append("g").attr("class","nvd3 nv-wrap nv-multiBarHorizontalChart").append("g"),_=O.select("g");M.append("g").attr("class","nv-x nv-axis"),M.append("g").attr("class","nv-y nv-axis").append("g").attr("class","nv-zeroLine").append("line"),M.append("g").attr("class","nv-barsWrap"),M.append("g").attr("class","nv-legendWrap"),M.append("g").attr("class","nv-controlsWrap"),c&&(i.width(T-x()),t.barColor()&&e.forEach(function(e,t){e.color=d3.rgb("#ccc").darker(t*1.5).toString()}),_.select(".nv-legendWrap").datum(e).call(i),o.top!=i.height()&&(o.top=i.height(),k=(a||parseInt(d.style("height"))||400)-o.top-o.bottom),_.select(".nv-legendWrap").attr("transform","translate("+x()+","+ -o.top+")"));if(l){var D=[{key:"Grouped",disabled:t.stacked()},{key:"Stacked",disabled:!t.stacked()}];s.width(x()).color(["#444","#444","#444"]),_.select(".nv-controlsWrap").datum(D).attr("transform","translate(0,"+ -o.top+")").call(s)}O.attr("transform","translate("+o.left+","+o.top+")"),t.disabled(e.map(function(e){return e.disabled})).width(T).height(k).color(e.map(function(e,t){return e.color||f(e,t)}).filter(function(t,n){return!e[n].disabled}));var P=_.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));P.call(t);if(h){n.scale(g).ticks(k/24).tickSize(-T,0),_.select(".nv-x.nv-axis").call(n);var H=_.select(".nv-x.nv-axis").selectAll("g");H.selectAll("line, text")}p&&(r.scale(y).ticks(T/100).tickSize(-k,0),_.select(".nv-y.nv-axis").attr("transform","translate(0,"+k+")"),_.select(".nv-y.nv-axis").call(r)),_.select(".nv-zeroLine line").attr("x1",y(0)).attr("x2",y(0)).attr("y1",0).attr("y2",-k),i.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),C.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;D=D.map(function(e){return e.disabled=!0,e}),e.disabled=!1;switch(e.key){case"Grouped":t.stacked(!1);break;case"Stacked":t.stacked(!0)}b.stacked=t.stacked(),S.stateChange(b),C.update()}),S.on("tooltipShow",function(e){v&&N(e,m.parentNode)}),S.on("changeState",function(n){typeof n.disabled!="undefined"&&(e.forEach(function(e,t){e.disabled=n.disabled[t]}),b.disabled=n.disabled),typeof n.stacked!="undefined"&&(t.stacked(n.stacked),b.stacked=n.stacked),C.update()})}),C}var t=e.models.multiBarHorizontal(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend().height(30),s=e.models.legend().height(30),o={top:30,right:20,bottom:50,left:60},u=null,a=null,f=e.utils.defaultColor(),l=!0,c=!0,h=!0,p=!0,d=!1,v=!0,m=function(e,t,n,r,i){return"

    "+e+" - "+t+"

    "+"

    "+n+"

    "},g,y,b={stacked:d},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),x=function(){return l?180:0},T=0;t.stacked(d),n.orient("left").tickPadding(5).highlightZero(!1).showMaxMin(!1).tickFormat(function(e){return e}),r.orient("bottom").tickFormat(d3.format(",.1f")),s.updateState(!1);var N=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=m(i.series.key,a,f,i,C);e.tooltip.show([o,u],l,i.value<0?"e":"w",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),C.dispatch=S,C.multibar=t,C.legend=i,C.xAxis=n,C.yAxis=r,d3.rebind(C,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","delay","showValues","showBarLabels","valueFormat","stacked","barColor"),C.options=e.utils.optionsFunc.bind(C),C.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,C):o},C.width=function(e){return arguments.length?(u=e,C):u},C.height=function(e){return arguments.length?(a=e,C):a},C.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),C):f},C.showControls=function(e){return arguments.length?(l=e,C):l},C.showLegend=function(e){return arguments.length?(c=e,C):c},C.showXAxis=function(e){return arguments.length?(h=e,C):h},C.showYAxis=function(e){return arguments.length?(p=e,C):p},C.tooltip=function(e){return arguments.length?(m=e,C):m},C.tooltips=function(e){return arguments.length?(v=e,C):v},C.tooltipContent=function(e){return arguments.length?(m=e,C):m},C.state=function(e){return arguments.length?(b=e,C):b},C.defaultState=function(e){return arguments.length?(w=e,C):w},C.noData=function(e){return arguments.length?(E=e,C):E},C.transitionDuration=function(e){return arguments.length?(T=e,C):T},C},e.models.multiChart=function(){function C(e){return e.each(function(e){var u=d3.select(this),f=this;C.update=function(){u.call(C)},C.container=this;var k=(r||parseInt(u.style("width"))||960)-t.left-t.right,L=(i||parseInt(u.style("height"))||400)-t.top-t.bottom,A=e.filter(function(e){return!e.disabled&&e.type=="line"&&e.yAxis==1}),O=e.filter(function(e){return!e.disabled&&e.type=="line"&&e.yAxis==2}),M=e.filter(function(e){return!e.disabled&&e.type=="bar"&&e.yAxis==1}),_=e.filter(function(e){return!e.disabled&&e.type=="bar"&&e.yAxis==2}),D=e.filter(function(e){return!e.disabled&&e.type=="area"&&e.yAxis==1}),P=e.filter(function(e){return!e.disabled&&e.type=="area"&&e.yAxis==2}),H=e.filter(function(e){return!e.disabled&&e.yAxis==1}).map(function(e){return e.values.map(function(e,t){return{x:e.x,y:e.y}})}),B=e.filter(function(e){return!e.disabled&&e.yAxis==2}).map(function(e){return e.values.map(function(e,t){return{x:e.x,y:e.y}})});a.domain(d3.extent(d3.merge(H.concat(B)),function(e){return e.x})).range([0,k]);var j=u.selectAll("g.wrap.multiChart").data([e]),F=j.enter().append("g").attr("class","wrap nvd3 multiChart").append("g");F.append("g").attr("class","x axis"),F.append("g").attr("class","y1 axis"),F.append("g").attr("class","y2 axis"),F.append("g").attr("class","lines1Wrap"),F.append("g").attr("class","lines2Wrap"),F.append("g").attr("class","bars1Wrap"),F.append("g").attr("class","bars2Wrap"),F.append("g").attr("class","stack1Wrap"),F.append("g").attr("class","stack2Wrap"),F.append("g").attr("class","legendWrap");var I=j.select("g");s&&(x.width(k/2),I.select(".legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.yAxis==1?"":" (right axis)"),e})).call(x),t.top!=x.height()&&(t.top=x.height(),L=(i||parseInt(u.style("height"))||400)-t.top-t.bottom),I.select(".legendWrap").attr("transform","translate("+k/2+","+ -t.top+")")),d.width(k).height(L).interpolate("monotone").color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="line"})),v.width(k).height(L).interpolate("monotone").color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="line"})),m.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="bar"})),g.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="bar"})),y.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="area"})),b.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="area"})),I.attr("transform","translate("+t.left+","+t.top+")");var q=I.select(".lines1Wrap").datum(A),R=I.select(".bars1Wrap").datum(M),U=I.select(".stack1Wrap").datum(D),z=I.select(".lines2Wrap").datum(O),W=I.select(".bars2Wrap").datum(_),X=I.select(".stack2Wrap").datum(P),V=D.length?D.map(function(e){return e.values}).reduce(function(e,t){return e.map(function(e,n){return{x:e.x,y:e.y+t[n].y}})}).concat([{x:0,y:0}]):[],$=P.length?P.map(function(e){return e.values}).reduce(function(e,t){return e.map(function(e,n){return{x:e.x,y:e.y+t[n].y}})}).concat([{x:0,y:0}]):[];h.domain(l||d3.extent(d3.merge(H).concat(V),function(e){return e.y})).range([0,L]),p.domain(c||d3.extent(d3.merge(B).concat($),function(e){return e.y})).range([0,L]),d.yDomain(h.domain()),m.yDomain(h.domain()),y.yDomain(h.domain()),v.yDomain(p.domain()),g.yDomain(p.domain()),b.yDomain(p.domain()),D.length&&d3.transition(U).call(y),P.length&&d3.transition(X).call(b),M.length&&d3.transition(R).call(m),_.length&&d3.transition(W).call(g),A.length&&d3.transition(q).call(d),O.length&&d3.transition(z).call(v),w.ticks(k/100).tickSize(-L,0),I.select(".x.axis").attr("transform","translate(0,"+L+")"),d3.transition(I.select(".x.axis")).call(w),E.ticks(L/36).tickSize(-k,0),d3.transition(I.select(".y1.axis")).call(E),S.ticks(L/36).tickSize(-k,0),d3.transition(I.select(".y2.axis")).call(S),I.select(".y2.axis").style("opacity",B.length?1:0).attr("transform","translate("+a.range()[1]+",0)"),x.dispatch.on("stateChange",function(e){C.update()}),T.on("tooltipShow",function(e){o&&N(e,f.parentNode)})}),C}var t={top:30,right:20,bottom:50,left:60},n=d3.scale.category20().range(),r=null,i=null,s=!0,o=!0,u=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" at "+t+"

    "},a,f,l,c,a=d3.scale.linear(),h=d3.scale.linear(),p=d3.scale.linear(),d=e.models.line().yScale(h),v=e.models.line().yScale(p),m=e.models.multiBar().stacked(!1).yScale(h),g=e.models.multiBar().stacked(!1).yScale(p),y=e.models.stackedArea().yScale(h),b=e.models.stackedArea().yScale(p),w=e.models.axis().scale(a).orient("bottom").tickPadding(5),E=e.models.axis().scale(h).orient("left"),S=e.models.axis().scale(p).orient("right"),x=e.models.legend().height(30),T=d3.dispatch("tooltipShow","tooltipHide"),N=function(t,n){var r=t.pos[0]+(n.offsetLeft||0),i=t.pos[1]+(n.offsetTop||0),s=w.tickFormat()(d.x()(t.point,t.pointIndex)),o=(t.series.yAxis==2?S:E).tickFormat()(d.y()(t.point,t.pointIndex)),a=u(t.series.key,s,o,t,C);e.tooltip.show([r,i],a,undefined,undefined,n.offsetParent)};return d.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),d.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),m.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),m.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),g.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),g.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),y.dispatch.on("tooltipShow",function(e){if(!Math.round(y.y()(e.point)*100))return setTimeout(function(){d3.selectAll(".point.hover").classed("hover",!1)},0),!1;e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),y.dispatch.on("tooltipHide",function(e){T.tooltipHide(e)}),b.dispatch.on("tooltipShow",function(e){if(!Math.round(b.y()(e.point)*100))return setTimeout(function(){d3.selectAll(".point.hover").classed("hover",!1)},0),!1;e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),b.dispatch.on("tooltipHide",function(e){T.tooltipHide(e)}),d.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),d.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){o&&e.tooltip.cleanup()}),C.dispatch=T,C.lines1=d,C.lines2=v,C.bars1=m,C.bars2=g,C.stack1=y,C.stack2=b,C.xAxis=w,C.yAxis1=E,C.yAxis2=S,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(getX=e,d.x(e),m.x(e),C):getX},C.y=function(e){return arguments.length?(getY=e,d.y(e),m.y(e),C):getY},C.yDomain1=function(e){return arguments.length?(l=e,C):l},C.yDomain2=function(e){return arguments.length?(c=e,C):c},C.margin=function(e){return arguments.length?(t=e,C):t},C.width=function(e){return arguments.length?(r=e,C):r},C.height=function(e){return arguments.length?(i=e,C):i},C.color=function(e){return arguments.length?(n=e,x.color(e),C):n},C.showLegend=function(e){return arguments.length?(s=e,C):s},C.tooltips=function(e){return arguments.length?(o=e,C):o},C.tooltipContent=function(e){return arguments.length?(u=e,C):u},C},e.models.ohlcBar=function(){function x(e){return e.each(function(e){var g=n-t.left-t.right,x=r-t.top-t.bottom,T=d3.select(this);s.domain(y||d3.extent(e[0].values.map(u).concat(p))),v?s.range(w||[g*.5/e[0].values.length,g*(e[0].values.length-.5)/e[0].values.length]):s.range(w||[0,g]),o.domain(b||[d3.min(e[0].values.map(h).concat(d)),d3.max(e[0].values.map(c).concat(d))]).range(E||[x,0]),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]-s.domain()[0]*.01,s.domain()[1]+s.domain()[1]*.01]):s.domain([-1,1])),o.domain()[0]===o.domain()[1]&&(o.domain()[0]?o.domain([o.domain()[0]+o.domain()[0]*.01,o.domain()[1]-o.domain()[1]*.01]):o.domain([-1,1]));var N=d3.select(this).selectAll("g.nv-wrap.nv-ohlcBar").data([e[0].values]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-ohlcBar"),k=C.append("defs"),L=C.append("g"),A=N.select("g");L.append("g").attr("class","nv-ticks"),N.attr("transform","translate("+t.left+","+t.top+")"),T.on("click",function(e,t){S.chartClick({data:e,index:t,pos:d3.event,id:i})}),k.append("clipPath").attr("id","nv-chart-clip-path-"+i).append("rect"),N.select("#nv-chart-clip-path-"+i+" rect").attr("width",g).attr("height",x),A.attr("clip-path",m?"url(#nv-chart-clip-path-"+i+")":"");var O=N.select(".nv-ticks").selectAll(".nv-tick").data(function(e){return e});O.exit().remove();var M=O.enter().append("path").attr("class",function(e,t,n){return(f(e,t)>l(e,t)?"nv-tick negative":"nv-tick positive")+" nv-tick-"+n+"-"+t}).attr("d",function(t,n){var r=g/e[0].values.length*.9;return"m0,0l0,"+(o(f(t,n))-o(c(t,n)))+"l"+ -r/2+",0l"+r/2+",0l0,"+(o(h(t,n))-o(f(t,n)))+"l0,"+(o(l(t,n))-o(h(t,n)))+"l"+r/2+",0l"+ -r/2+",0z"}).attr("transform",function(e,t){return"translate("+s(u(e,t))+","+o(c(e,t))+")"}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),S.elementMouseover({point:t,series:e[0],pos:[s(u(t,n)),o(a(t,n))],pointIndex:n,seriesIndex:0,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),S.elementMouseout({point:t,series:e[0],pointIndex:n,seriesIndex:0,e:d3.event})}).on("click",function(e,t){S.elementClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()}).on("dblclick",function(e,t){S.elementDblClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()});O.attr("class",function(e,t,n){return(f(e,t)>l(e,t)?"nv-tick negative":"nv-tick positive")+" nv-tick-"+n+"-"+t}),d3.transition(O).attr("transform",function(e,t){return"translate("+s(u(e,t))+","+o(c(e,t))+")"}).attr("d",function(t,n){var r=g/e[0].values.length*.9;return"m0,0l0,"+(o(f(t,n))-o(c(t,n)))+"l"+ -r/2+",0l"+r/2+",0l0,"+(o(h(t,n))-o(f(t,n)))+"l0,"+(o(l(t,n))-o(h(t,n)))+"l"+r/2+",0l"+ -r/2+",0z"})}),x}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=function(e){return e.open},l=function(e){return e.close},c=function(e){return e.high},h=function(e){return e.low},p=[],d=[],v=!1,m=!0,g=e.utils.defaultColor(),y,b,w,E,S=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout");return x.dispatch=S,x.options=e.utils.optionsFunc.bind(x),x.x=function(e){return arguments.length?(u=e,x):u},x.y=function(e){return arguments.length?(a=e,x):a},x.open=function(e){return arguments.length?(f=e,x):f},x.close=function(e){return arguments.length?(l=e,x):l},x.high=function(e){return arguments.length?(c=e,x):c},x.low=function(e){return arguments.length?(h=e,x):h},x.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,x):t},x.width=function(e){return arguments.length?(n=e,x):n},x.height=function(e){return arguments.length?(r=e,x):r},x.xScale=function(e){return arguments.length?(s=e,x):s},x.yScale=function(e){return arguments.length?(o=e,x):o},x.xDomain=function(e){return arguments.length?(y=e,x):y},x.yDomain=function(e){return arguments.length?(b=e,x):b},x.xRange=function(e){return arguments.length?(w=e,x):w},x.yRange=function(e){return arguments.length?(E=e,x):E},x.forceX=function(e){return arguments.length?(p=e,x):p},x.forceY=function(e){return arguments.length?(d=e,x):d},x.padData=function(e){return arguments.length?(v=e,x):v},x.clipEdge=function(e){return arguments.length?(m=e,x):m},x.color=function(t){return arguments.length?(g=e.utils.getColor(t),x):g},x.id=function(e){return arguments.length?(i=e,x):i},x},e.models.pie=function(){function S(e){return e.each(function(e){function q(e){var t=(e.startAngle+e.endAngle)*90/Math.PI-90;return t>90?t-180:t}function R(e){e.endAngle=isNaN(e.endAngle)?0:e.endAngle,e.startAngle=isNaN(e.startAngle)?0:e.startAngle,m||(e.innerRadius=0);var t=d3.interpolate(this._current,e);return this._current=t(0),function(e){return A(t(e))}}function U(e){e.innerRadius=0;var t=d3.interpolate({startAngle:0,endAngle:0},e);return function(e){return A(t(e))}}var o=n-t.left-t.right,f=r-t.top-t.bottom,S=Math.min(o,f)/2,x=S-S/5,T=d3.select(this),N=T.selectAll(".nv-wrap.nv-pie").data(e),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-pie nv-chart-"+u),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-pie"),k.append("g").attr("class","nv-pieLabels"),N.attr("transform","translate("+t.left+","+t.top+")"),L.select(".nv-pie").attr("transform","translate("+o/2+","+f/2+")"),L.select(".nv-pieLabels").attr("transform","translate("+o/2+","+f/2+")"),T.on("click",function(e,t){E.chartClick({data:e,index:t,pos:d3.event,id:u})});var A=d3.svg.arc().outerRadius(x);y&&A.startAngle(y),b&&A.endAngle(b),m&&A.innerRadius(S*w);var O=d3.layout.pie().sort(null).value(function(e){return e.disabled?0:s(e)}),M=N.select(".nv-pie").selectAll(".nv-slice").data(O),_=N.select(".nv-pieLabels").selectAll(".nv-label").data(O);M.exit().remove(),_.exit().remove();var D=M.enter().append("g").attr("class","nv-slice").on("mouseover",function(e,t){d3.select(this).classed("hover",!0),E.elementMouseover({label:i(e.data),value:s(e.data),point:e.data,pointIndex:t,pos:[d3.event.pageX,d3.event.pageY],id:u})}).on("mouseout",function(e,t){d3.select(this).classed("hover",!1),E.elementMouseout({label:i(e.data),value:s(e.data),point:e.data,index:t,id:u})}).on("click",function(e,t){E.elementClick({label:i(e.data),value:s(e.data),point:e.data,index:t,pos:d3.event,id:u}),d3.event.stopPropagation()}).on("dblclick",function(e,t){E.elementDblClick({label:i(e.data),value:s(e.data),point:e.data,index:t,pos:d3.event,id:u}),d3.event.stopPropagation()});M.attr("fill",function(e,t){return a(e,t)}).attr("stroke",function(e,t){return a(e,t)});var P=D.append("path").each(function(e){this._current=e});M.select("path").attr("d",A);if(l){var H=d3.svg.arc().innerRadius(0);c&&(H=A),h&&(H=d3.svg.arc().outerRadius(A.outerRadius())),_.enter().append("g").classed("nv-label",!0).each(function(e,t){var n=d3.select(this);n.attr("transform",function(e){if(g){e.outerRadius=x+10,e.innerRadius=x+15;var t=(e.startAngle+e.endAngle)/2*(180/Math.PI);return(e.startAngle+e.endAngle)/2v?r[p]:""})}}),S}var t={top:0,right:0,bottom:0,left:0},n=500,r=500,i=function(e){return e.x},s=function(e){return e.y},o=function(e){return e.description},u=Math.floor(Math.random()*1e4),a=e.utils.defaultColor(),f=d3.format(",.2f"),l=!0,c=!0,h=!1,p="key",v=.02,m=!1,g=!1,y=!1,b=!1,w=.5,E=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout");return S.dispatch=E,S.options=e.utils.optionsFunc.bind(S),S.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,S):t},S.width=function(e){return arguments.length?(n=e,S):n},S.height=function(e){return arguments.length?(r=e,S):r},S.values=function(t){return e.log("pie.values() is no longer supported."),S},S.x=function(e){return arguments.length?(i=e,S):i},S.y=function(e){return arguments.length?(s=d3.functor(e),S):s},S.description=function(e){return arguments.length?(o=e,S):o},S.showLabels=function(e){return arguments.length?(l=e,S):l},S.labelSunbeamLayout=function(e){return arguments.length?(g=e,S):g},S.donutLabelsOutside=function(e){return arguments.length?(h=e,S):h},S.pieLabelsOutside=function(e){return arguments.length?(c=e,S):c},S.labelType=function(e){return arguments.length?(p=e,p=p||"key",S):p},S.donut=function(e){return arguments.length?(m=e,S):m},S.donutRatio=function(e){return arguments.length?(w=e,S):w},S.startAngle=function(e){return arguments.length?(y=e,S):y},S.endAngle=function(e){return arguments.length?(b=e,S):b},S.id=function(e){return arguments.length?(u=e,S):u},S.color=function(t){return arguments.length?(a=e.utils.getColor(t),S):a},S.valueFormat=function(e){return arguments.length?(f=e,S):f},S.labelThreshold=function(e){return arguments.length?(v=e,S):v},S},e.models.pieChart=function(){function v(e){return e.each(function(e){var u=d3.select(this),a=this,f=(i||parseInt(u.style("width"))||960)-r.left-r.right,d=(s||parseInt(u.style("height"))||400)-r.top-r.bottom;v.update=function(){u.call(v)},v.container=this,l.disabled=e.map(function(e){return!!e.disabled});if(!c){var m;c={};for(m in l)l[m]instanceof Array?c[m]=l[m].slice(0):c[m]=l[m]}if(!e||!e.length){var g=u.selectAll(".nv-noData").data([h]);return g.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),g.attr("x",r.left+f/2).attr("y",r.top+d/2).text(function(e){return e}),v}u.selectAll(".nv-noData").remove();var y=u.selectAll("g.nv-wrap.nv-pieChart").data([e]),b=y.enter().append("g").attr("class","nvd3 nv-wrap nv-pieChart").append("g"),w=y.select("g");b.append("g").attr("class","nv-pieWrap"),b.append("g").attr("class","nv-legendWrap"),o&&(n.width(f).key(t.x()),y.select(".nv-legendWrap").datum(e).call(n),r.top!=n.height()&&(r.top=n.height(),d=(s||parseInt(u.style("height"))||400)-r.top-r.bottom),y.select(".nv-legendWrap").attr("transform","translate(0,"+ -r.top+")")),y.attr("transform","translate("+r.left+","+r.top+")"),t.width(f).height(d);var E=w.select(".nv-pieWrap").datum([e]);d3.transition(E).call(t),n.dispatch.on("stateChange",function(e){l=e,p.stateChange(l),v.update()}),t.dispatch.on("elementMouseout.tooltip",function(e){p.tooltipHide(e)}),p.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),l.disabled=t.disabled),v.update()})}),v}var t=e.models.pie(),n=e.models.legend(),r={top:30,right:20,bottom:20,left:20},i=null,s=null,o=!0,u=e.utils.defaultColor(),a=!0,f=function(e,t,n,r){return"

    "+e+"

    "+"

    "+t+"

    "},l={},c=null,h="No Data Available.",p=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),d=function(n,r){var i=t.description()(n.point)||t.x()(n.point),s=n.pos[0]+(r&&r.offsetLeft||0),o=n.pos[1]+(r&&r.offsetTop||0),u=t.valueFormat()(t.y()(n.point)),a=f(i,u,n,v);e.tooltip.show([s,o],a,n.value<0?"n":"s",null,r)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+r.left,e.pos[1]+r.top],p.tooltipShow(e)}),p.on("tooltipShow",function(e){a&&d(e)}),p.on("tooltipHide",function(){a&&e.tooltip.cleanup()}),v.legend=n,v.dispatch=p,v.pie=t,d3.rebind(v,t,"valueFormat","values","x","y","description","id","showLabels","donutLabelsOutside","pieLabelsOutside","labelType","donut","donutRatio","labelThreshold"),v.options=e.utils.optionsFunc.bind(v),v.margin=function(e){return arguments.length?(r.top=typeof e.top!="undefined"?e.top:r.top,r.right=typeof e.right!="undefined"?e.right:r.right,r.bottom=typeof e.bottom!="undefined"?e.bottom:r.bottom,r.left=typeof e.left!="undefined"?e.left:r.left,v):r},v.width=function(e){return arguments.length?(i=e,v):i},v.height=function(e){return arguments.length?(s=e,v):s},v.color=function(r){return arguments.length?(u=e.utils.getColor(r),n.color(u),t.color(u),v):u},v.showLegend=function(e){return arguments.length?(o=e,v):o},v.tooltips=function(e){return arguments.length?(a=e,v):a},v.tooltipContent=function(e){return arguments.length?(f=e,v):f},v.state=function(e){return arguments.length?(l=e,v):l},v.defaultState=function(e){return arguments.length?(c=e,v):c},v.noData=function(e){return arguments.length?(h=e,v):h},v},e.models.scatter=function(){function I(q){return q.each(function(I){function Q(){if(!g)return!1;var e,i=d3.merge(I.map(function(e,t){return e.values.map(function(e,n){var r=f(e,n),i=l(e,n);return[o(r),u(i),t,n,e]}).filter(function(e,t){return b(e[4],t)})}));if(D===!0){if(x){var a=X.select("defs").selectAll(".nv-point-clips").data([s]).enter();a.append("clipPath").attr("class","nv-point-clips").attr("id","nv-points-clip-"+s);var c=X.select("#nv-points-clip-"+s).selectAll("circle").data(i);c.enter().append("circle").attr("r",T),c.exit().remove(),c.attr("cx",function(e){return e[0]}).attr("cy",function(e){return e[1]}),X.select(".nv-point-paths").attr("clip-path","url(#nv-points-clip-"+s+")")}i.length&&(i.push([o.range()[0]-20,u.range()[0]-20,null,null]),i.push([o.range()[1]+20,u.range()[1]+20,null,null]),i.push([o.range()[0]-20,u.range()[0]+20,null,null]),i.push([o.range()[1]+20,u.range()[1]-20,null,null]));var h=d3.geom.polygon([[-10,-10],[-10,r+10],[n+10,r+10],[n+10,-10]]),p=1e-6;i=i.sort(function(e,t){return e[0]-t[0]||e[1]-t[1]});for(var d=0;d0?R:0),K.attr("clip-path",S?"url(#nv-edge-clip-"+s+")":""),F=!0;var G=X.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});G.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),G.exit().remove(),G.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}),G.style("fill",function(e,t){return i(e,t)}).style("stroke",function(e,t){return i(e,t)}).style("stroke-opacity",1).style("fill-opacity",.5);if(p){var Y=G.selectAll("circle.nv-point").data(function(e){return e.values},y);Y.enter().append("circle").style("fill",function(e,t){return e.color}).style("stroke",function(e,t){return e.color}).attr("cx",function(t,n){return e.utils.NaNtoZero(P(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(H(l(t,n)))}).attr("r",function(e,t){return Math.sqrt(a(c(e,t))/Math.PI)}),Y.exit().remove(),G.exit().selectAll("path.nv-point").attr("cx",function(t,n){return e.utils.NaNtoZero(o(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(u(l(t,n)))}).remove(),Y.each(function(e,t){d3.select(this).classed("nv-point",!0).classed("nv-point-"+t,!0).classed("hover",!1)}),Y.attr("cx",function(t,n){return e.utils.NaNtoZero(o(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(u(l(t,n)))}).attr("r",function(e,t){return Math.sqrt(a(c(e,t))/Math.PI)})}else{var Y=G.selectAll("path.nv-point").data(function(e){return e.values});Y.enter().append("path").style("fill",function(e,t){return e.color}).style("stroke",function(e,t){return e.color}).attr("transform",function(e,t){return"translate("+P(f(e,t))+","+H(l(e,t))+")"}).attr("d",d3.svg.symbol().type(h).size(function(e,t){return a(c(e,t))})),Y.exit().remove(),G.exit().selectAll("path.nv-point").attr("transform",function(e,t){return"translate("+o(f(e,t))+","+u(l(e,t))+")"}).remove(),Y.each(function(e,t){d3.select(this).classed("nv-point",!0).classed("nv-point-"+t,!0).classed("hover",!1)}),Y.attr("transform",function(e,t){return"translate("+o(f(e,t))+","+u(l(e,t))+")"}).attr("d",d3.svg.symbol().type(h).size(function(e,t){return a(c(e,t))}))}clearTimeout(j),j=setTimeout(Q,300),P=o.copy(),H=u.copy(),B=a.copy()}),I}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=e.utils.defaultColor(),s=Math.floor(Math.random()*1e5),o=d3.scale.linear(),u=d3.scale.linear(),a=d3.scale.linear(),f=function(e){return e.x},l=function(e){return e.y},c=function(e){return e.size||1},h=function(e){return e.shape||"circle"},p=!0,d=[],v=[],m=[],g=!0,y=null,b=function(e){return!e.notActive},w=!1,E=.1,S=!1,x=!0,T=function(){return 25},N=null,C=null,k=null,L=null,A=null,O=null,M=!1,_=d3.dispatch("elementClick","elementMouseover","elementMouseout"),D=!0,P,H,B,j,F=!1;return I.clearHighlights=function(){d3.selectAll(".nv-chart-"+s+" .nv-point.hover").classed("hover",!1)},I.highlightPoint=function(e,t,n){d3.select(".nv-chart-"+s+" .nv-series-"+e+" .nv-point-"+t).classed("hover",n)},_.on("elementMouseover.point",function(e){g&&I.highlightPoint(e.seriesIndex,e.pointIndex,!0)}),_.on("elementMouseout.point",function(e){g&&I.highlightPoint(e.seriesIndex,e.pointIndex,!1)}),I.dispatch=_,I.options=e.utils.optionsFunc.bind(I),I.x=function(e){return arguments.length?(f=d3.functor(e),I):f},I.y=function(e){return arguments.length?(l=d3.functor(e),I):l},I.size=function(e){return arguments.length?(c=d3.functor(e),I):c},I.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,I):t},I.width=function(e){return arguments.length?(n=e,I):n},I.height=function(e){return arguments.length?(r=e,I):r},I.xScale=function(e){return arguments.length?(o=e,I):o},I.yScale=function(e){return arguments.length?(u=e,I):u},I.zScale=function(e){return arguments.length?(a=e,I):a},I.xDomain=function(e){return arguments.length?(N=e,I):N},I.yDomain=function(e){return arguments.length?(C=e,I):C},I.sizeDomain=function(e){return arguments.length?(A=e,I):A},I.xRange=function(e){return arguments.length?(k=e,I):k},I.yRange=function(e){return arguments.length?(L=e,I):L},I.sizeRange=function(e){return arguments.length?(O=e,I):O},I.forceX=function(e){return arguments.length?(d=e,I):d},I.forceY=function(e){return arguments.length?(v=e,I):v},I.forceSize=function(e){return arguments.length?(m=e,I):m},I.interactive=function(e){return arguments.length?(g=e,I):g},I.pointKey=function(e){return arguments.length?(y=e,I):y},I.pointActive=function(e){return arguments.length?(b=e,I):b},I.padData=function(e){return arguments.length?(w=e,I):w},I.padDataOuter=function(e){return arguments.length?(E=e,I):E},I.clipEdge=function(e){return arguments.length?(S=e,I):S},I.clipVoronoi=function(e){return arguments.length?(x=e,I):x},I.useVoronoi=function(e){return arguments.length?(D=e,D===!1&&(x=!1),I):D},I.clipRadius=function(e){return arguments.length?(T=e,I):T},I.color=function(t){return arguments.length?(i=e.utils.getColor(t),I):i},I.shape=function(e){return arguments.length?(h=e,I):h},I.onlyCircles=function(e){return arguments.length?(p=e,I):p},I.id=function(e){return arguments.length?(s=e,I):s},I.singlePoint=function(e){return arguments.length?(M=e,I):M},I},e.models.scatterChart=function(){function F(e){return e.each(function(e){function J(){if(T)return W.select(".nv-point-paths").style("pointer-events","all"),!1;W.select(".nv-point-paths").style("pointer-events","none");var i=d3.mouse(this);h.distortion(x).focus(i[0]),p.distortion(x).focus(i[1]),W.select(".nv-scatterWrap").call(t),b&&W.select(".nv-x.nv-axis").call(n),w&&W.select(".nv-y.nv-axis").call(r),W.select(".nv-distributionX").datum(e.filter(function(e){return!e.disabled})).call(o),W.select(".nv-distributionY").datum(e.filter(function(e){return!e.disabled})).call(u)}var C=d3.select(this),k=this,L=(f||parseInt(C.style("width"))||960)-a.left-a.right,D=(l||parseInt(C.style("height"))||400)-a.top-a.bottom;F.update=function(){C.call(F)},F.container=this,A.disabled=e.map(function(e){return!!e.disabled});if(!O){var I;O={};for(I in A)A[I]instanceof Array?O[I]=A[I].slice(0):O[I]=A[I]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var q=C.selectAll(".nv-noData").data([_]);return q.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),q.attr("x",a.left+L/2).attr("y",a.top+D/2).text(function(e){return e}),F}C.selectAll(".nv-noData").remove(),P=P||h,H=H||p;var R=C.selectAll("g.nv-wrap.nv-scatterChart").data([e]),U=R.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),z=U.append("g"),W=R.select("g");z.append("rect").attr("class","nvd3 nv-background"),z.append("g").attr("class","nv-x nv-axis"),z.append("g").attr("class","nv-y nv-axis"),z.append("g").attr("class","nv-scatterWrap"),z.append("g").attr("class","nv-distWrap"),z.append("g").attr("class","nv-legendWrap"),z.append("g").attr("class","nv-controlsWrap");if(y){var X=S?L/2:L;i.width(X),R.select(".nv-legendWrap").datum(e).call(i),a.top!=i.height()&&(a.top=i.height(),D=(l||parseInt(C.style("height"))||400)-a.top-a.bottom),R.select(".nv-legendWrap").attr("transform","translate("+(L-X)+","+ -a.top+")")}S&&(s.width(180).color(["#444"]),W.select(".nv-controlsWrap").datum(j).attr("transform","translate(0,"+ -a.top+")").call(s)),R.attr("transform","translate("+a.left+","+a.top+")"),E&&W.select(".nv-y.nv-axis").attr("transform","translate("+L+",0)"),t.width(L).height(D).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),d!==0&&t.xDomain(null),v!==0&&t.yDomain(null),R.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t);if(d!==0){var V=h.domain()[1]-h.domain()[0];t.xDomain([h.domain()[0]-d*V,h.domain()[1]+d*V])}if(v!==0){var $=p.domain()[1]-p.domain()[0];t.yDomain([p.domain()[0]-v*$,p.domain()[1]+v*$])}(v!==0||d!==0)&&R.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),b&&(n.scale(h).ticks(n.ticks()&&n.ticks().length?n.ticks():L/100).tickSize(-D,0),W.select(".nv-x.nv-axis").attr("transform","translate(0,"+p.range()[0]+")").call(n)),w&&(r.scale(p).ticks(r.ticks()&&r.ticks().length?r.ticks():D/36).tickSize(-L,0),W.select(".nv-y.nv-axis").call(r)),m&&(o.getData(t.x()).scale(h).width(L).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),z.select(".nv-distWrap").append("g").attr("class","nv-distributionX"),W.select(".nv-distributionX").attr("transform","translate(0,"+p.range()[0]+")").datum(e.filter(function(e){return!e.disabled})).call(o)),g&&(u.getData(t.y()).scale(p).width(D).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),z.select(".nv-distWrap").append("g").attr("class","nv-distributionY"),W.select(".nv-distributionY").attr("transform","translate("+(E?L:-u.size())+",0)").datum(e.filter(function(e){return!e.disabled})).call(u)),d3.fisheye&&(W.select(".nv-background").attr("width",L).attr("height",D),W.select(".nv-background").on("mousemove",J),W.select(".nv-background").on("click",function(){T=!T}),t.dispatch.on("elementClick.freezeFisheye",function(){T=!T})),s.dispatch.on("legendClick",function(e,i){e.disabled=!e.disabled,x=e.disabled?0:2.5,W.select(".nv-background").style("pointer-events",e.disabled?"none":"all"),W.select(".nv-point-paths").style("pointer-events",e.disabled?"all":"none"),e.disabled?(h.distortion(x).focus(0),p.distortion(x).focus(0),W.select(".nv-scatterWrap").call(t),W.select(".nv-x.nv-axis").call(n),W.select(".nv-y.nv-axis").call(r)):T=!1,F.update()}),i.dispatch.on("stateChange",function(e){A.disabled=e.disabled,M.stateChange(A),F.update()}),t.dispatch.on("elementMouseover.tooltip",function(e){d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",function(t,n){return e.pos[1]-D}),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",e.pos[0]+o.size()),e.pos=[e.pos[0]+a.left,e.pos[1]+a.top],M.tooltipShow(e)}),M.on("tooltipShow",function(e){N&&B(e,k.parentNode)}),M.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),A.disabled=t.disabled),F.update()}),P=h.copy(),H=p.copy()}),F}var t=e.models.scatter(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.models.distribution(),u=e.models.distribution(),a={top:30,right:20,bottom:50,left:75},f=null,l=null,c=e.utils.defaultColor(),h=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.xScale(),p=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.yScale(),d=0,v=0,m=!1,g=!1,y=!0,b=!0,w=!0,E=!1,S=!!d3.fisheye,x=0,T=!1,N=!0,C=function(e,t,n){return""+t+""},k=function(e,t,n){return""+n+""},L=null,A={},O=null,M=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),_="No Data Available.",D=0;t.xScale(h).yScale(p),n.orient("bottom").tickPadding(10),r.orient(E?"right":"left").tickPadding(10),o.axis("x"),u.axis("y"),s.updateState(!1);var P,H,B=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));C!=null&&e.tooltip.show([f,l],C(i.series.key,v,m,i,F),"n",1,s,"x-nvtooltip"),k!=null&&e.tooltip.show([c,d],k(i.series.key,v,m,i,F),"e",1,s,"y-nvtooltip"),L!=null&&e.tooltip.show([o,u],L(i.series.key,v,m,i,F),i.value<0?"n":"s",null,s)},j=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){M.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",u.size())}),M.on("tooltipHide",function(){N&&e.tooltip.cleanup()}),F.dispatch=M,F.scatter=t,F.legend=i,F.controls=s,F.xAxis=n,F.yAxis=r,F.distX=o,F.distY=u,d3.rebind(F,t,"id","interactive","pointActive","x","y","shape","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","sizeRange","forceX","forceY","forceSize","clipVoronoi","clipRadius","useVoronoi"),F.options=e.utils.optionsFunc.bind(F),F.margin=function(e){return arguments.length?(a.top=typeof e.top!="undefined"?e.top:a.top,a.right=typeof e.right!="undefined"?e.right:a.right,a.bottom=typeof e.bottom!="undefined"?e.bottom:a.bottom,a.left=typeof e.left!="undefined"?e.left:a.left,F):a},F.width=function(e){return arguments.length?(f=e,F):f},F.height=function(e){return arguments.length?(l=e,F):l},F.color=function(t){return arguments.length?(c=e.utils.getColor(t),i.color(c),o.color(c),u.color(c),F):c},F.showDistX=function(e){return arguments.length?(m=e,F):m},F.showDistY=function(e){return arguments.length?(g=e,F):g},F.showControls=function(e){return arguments.length?(S=e,F):S},F.showLegend=function(e){return arguments.length?(y=e,F):y},F.showXAxis=function(e){return arguments.length?(b=e,F):b},F.showYAxis=function(e){return arguments.length?(w=e,F):w},F.rightAlignYAxis=function(e){return arguments.length?(E=e,r.orient(e?"right":"left"),F):E},F.fisheye=function(e){return arguments.length?(x=e,F):x},F.xPadding=function(e){return arguments.length?(d=e,F):d},F.yPadding=function(e){return arguments.length?(v=e,F):v},F.tooltips=function(e){return arguments.length?(N=e,F):N},F.tooltipContent=function(e){return arguments.length?(L=e,F):L},F.tooltipXContent=function(e){return arguments.length?(C=e,F):C},F.tooltipYContent=function(e){return arguments.length?(k=e,F):k},F.state=function(e){return arguments.length?(A=e,F):A},F.defaultState=function(e){return arguments.length?(O=e,F):O},F.noData=function(e){return arguments.length?(_=e,F):_},F.transitionDuration=function(e){return arguments.length?(D=e,F):D},F},e.models.scatterPlusLineChart=function(){function B(e){return e.each(function(e){function V(){if(S)return U.select(".nv-point-paths").style("pointer-events","all"),!1;U.select(".nv-point-paths").style("pointer-events","none");var i=d3.mouse(this);h.distortion(E).focus(i[0]),p.distortion(E).focus(i[1]),U.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),g&&U.select(".nv-x.nv-axis").call(n),y&&U.select(".nv-y.nv-axis").call(r),U.select(".nv-distributionX").datum(e.filter(function(e){return!e.disabled})).call(o),U.select(".nv-distributionY").datum(e.filter(function(e){return!e.disabled})).call(u)}var T=d3.select(this),N=this,C=(f||parseInt(T.style("width"))||960)-a.left-a.right,M=(l||parseInt(T.style("height"))||400)-a.top-a.bottom;B.update=function(){T.call(B)},B.container=this,k.disabled=e.map(function(e){return!!e.disabled});if(!L){var j;L={};for(j in k)k[j]instanceof Array?L[j]=k[j].slice(0):L[j]=k[j]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var F=T.selectAll(".nv-noData").data([O]);return F.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),F.attr("x",a.left+C/2).attr("y",a.top+M/2).text(function(e){return e}),B}T.selectAll(".nv-noData").remove(),h=t.xScale(),p=t.yScale(),_=_||h,D=D||p;var I=T.selectAll("g.nv-wrap.nv-scatterChart").data([e]),q=I.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),R=q.append("g"),U=I.select("g");R.append("rect").attr("class","nvd3 nv-background").style("pointer-events","none"),R.append("g").attr("class","nv-x nv-axis"),R.append("g").attr("class","nv-y nv-axis"),R.append("g").attr("class","nv-scatterWrap"),R.append("g").attr("class","nv-regressionLinesWrap"),R.append("g").attr("class","nv-distWrap"),R.append("g").attr("class","nv-legendWrap"),R.append("g").attr("class","nv-controlsWrap"),I.attr("transform","translate("+a.left+","+a.top+")"),b&&U.select(".nv-y.nv-axis").attr("transform","translate("+C+",0)"),m&&(i.width(C/2),I.select(".nv-legendWrap").datum(e).call(i),a.top!=i.height()&&(a.top=i.height(),M=(l||parseInt(T.style("height"))||400)-a.top-a.bottom),I.select(".nv-legendWrap").attr("transform","translate("+C/2+","+ -a.top+")")),w&&(s.width(180).color(["#444"]),U.select(".nv-controlsWrap").datum(H).attr("transform","translate(0,"+ -a.top+")").call(s)),t.width(C).height(M).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),I.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),I.select(".nv-regressionLinesWrap").attr("clip-path","url(#nv-edge-clip-"+t.id()+")");var z=I.select(".nv-regressionLinesWrap").selectAll(".nv-regLines").data(function(e){return e});z.enter().append("g").attr("class","nv-regLines");var W=z.selectAll(".nv-regLine").data(function(e){return[e]}),X=W.enter().append("line").attr("class","nv-regLine").style("stroke-opacity",0);W.attr("x1",h.range()[0]).attr("x2",h.range()[1]).attr("y1",function(e,t){return p(h.domain()[0]*e.slope+e.intercept)}).attr("y2",function(e,t){return p(h.domain()[1]*e.slope+e.intercept)}).style("stroke",function(e,t,n){return c(e,n)}).style("stroke-opacity",function(e,t){return e.disabled||typeof e.slope=="undefined"||typeof e.intercept=="undefined"?0:1}),g&&(n.scale(h).ticks(n.ticks()?n.ticks():C/100).tickSize(-M,0),U.select(".nv-x.nv-axis").attr("transform","translate(0,"+p.range()[0]+")").call(n)),y&&(r.scale(p).ticks(r.ticks()?r.ticks():M/36).tickSize(-C,0),U.select(".nv-y.nv-axis").call(r)),d&&(o.getData(t.x()).scale(h).width(C).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),R.select(".nv-distWrap").append("g").attr("class","nv-distributionX"),U.select(".nv-distributionX").attr("transform","translate(0,"+p.range()[0]+")").datum(e.filter(function(e){return!e.disabled})).call(o)),v&&(u.getData(t.y()).scale(p).width(M).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),R.select(".nv-distWrap").append("g").attr("class","nv-distributionY"),U.select(".nv-distributionY").attr("transform","translate("+(b?C:-u.size())+",0)").datum(e.filter(function(e){return!e.disabled})).call(u)),d3.fisheye&&(U.select(".nv-background").attr("width",C).attr("height",M),U.select(".nv-background").on("mousemove",V),U.select(".nv-background").on("click",function(){S=!S}),t.dispatch.on("elementClick.freezeFisheye",function(){S=!S})),s.dispatch.on("legendClick",function(e,i){e.disabled=!e.disabled,E=e.disabled?0:2.5,U.select(".nv-background").style("pointer-events",e.disabled?"none":"all"),U.select(".nv-point-paths").style("pointer-events",e.disabled?"all":"none"),e.disabled?(h.distortion(E).focus(0),p.distortion(E).focus(0),U.select(".nv-scatterWrap").call(t),U.select(".nv-x.nv-axis").call(n),U.select(".nv-y.nv-axis").call(r)):S=!1,B.update()}),i.dispatch.on("stateChange",function(e){k=e,A.stateChange(k),B.update()}),t.dispatch.on("elementMouseover.tooltip",function(e){d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",e.pos[1]-M),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",e.pos[0]+o.size()),e.pos=[e.pos[0]+a.left,e.pos[1]+a.top],A.tooltipShow(e)}),A.on("tooltipShow",function(e){x&&P(e,N.parentNode)}),A.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),k.disabled=t.disabled),B.update()}),_=h.copy(),D=p.copy()}),B}var t=e.models.scatter(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.models.distribution(),u=e.models.distribution(),a={top:30,right:20,bottom:50,left:75},f=null,l=null,c=e.utils.defaultColor(),h=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.xScale(),p=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.yScale(),d=!1,v=!1,m=!0,g=!0,y=!0,b=!1,w=!!d3.fisheye,E=0,S=!1,x=!0,T=function(e,t,n){return""+t+""},N=function(e,t,n){return""+n+""},C=function(e,t,n,r){return"

    "+e+"

    "+"

    "+r+"

    "},k={},L=null,A=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),O="No Data Available.",M=0;t.xScale(h).yScale(p),n.orient("bottom").tickPadding(10),r.orient(b?"right":"left").tickPadding(10),o.axis("x"),u.axis("y"),s.updateState(!1);var _,D,P=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));T!=null&&e.tooltip.show([f,l],T(i.series.key,v,m,i,B),"n",1,s,"x-nvtooltip"),N!=null&&e.tooltip.show([c,d],N(i.series.key,v,m,i,B),"e",1,s,"y-nvtooltip"),C!=null&&e.tooltip.show([o,u],C(i.series.key,v,m,i.point.tooltip,i,B),i.value<0?"n":"s",null,s)},H=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){A.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",u.size())}),A.on("tooltipHide",function(){x&&e.tooltip.cleanup()}),B.dispatch=A,B.scatter=t,B.legend=i,B.controls=s,B.xAxis=n,B.yAxis=r,B.distX=o,B.distY=u,d3.rebind(B,t,"id","interactive","pointActive","x","y","shape","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","sizeRange","forceX","forceY","forceSize","clipVoronoi","clipRadius","useVoronoi"),B.options=e.utils.optionsFunc.bind(B),B.margin=function(e){return arguments.length?(a.top=typeof e.top!="undefined"?e.top:a.top,a.right=typeof e.right!="undefined"?e.right:a.right,a.bottom=typeof e.bottom!="undefined"?e.bottom:a.bottom,a.left=typeof e.left!="undefined"?e.left:a.left,B):a},B.width=function(e){return arguments.length?(f=e,B):f},B.height=function(e){return arguments.length?(l=e,B):l},B.color=function(t){return arguments.length?(c=e.utils.getColor(t),i.color(c),o.color(c),u.color(c),B):c},B.showDistX=function(e){return arguments.length?(d=e,B):d},B.showDistY=function(e){return arguments.length?(v=e,B):v},B.showControls=function(e){return arguments.length?(w=e,B):w},B.showLegend=function(e){return arguments.length?(m=e,B):m},B.showXAxis=function(e){return arguments.length?(g=e,B):g},B.showYAxis=function(e){return arguments.length?(y=e,B):y},B.rightAlignYAxis=function(e){return arguments.length?(b=e,r.orient(e?"right":"left"),B):b},B.fisheye=function(e){return arguments.length?(E=e,B):E},B.tooltips=function(e){return arguments.length?(x=e,B):x},B.tooltipContent=function(e){return arguments.length?(C=e,B):C},B.tooltipXContent=function(e){return arguments.length?(T=e,B):T},B.tooltipYContent=function(e){return arguments.length?(N=e,B):N},B.state=function(e){return arguments.length?(k=e,B):k},B.defaultState=function(e){return arguments.length?(L=e,B):L},B.noData=function(e){return arguments.length?(O=e,B):O},B.transitionDuration=function(e){return arguments.length?(M=e,B):M},B},e.models.sparkline=function(){function d(e){return e.each(function(e){var i=n-t.left-t.right,d=r-t.top-t.bottom,v=d3.select(this);s.domain(l||d3.extent(e,u)).range(h||[0,i]),o.domain(c||d3.extent(e,a)).range(p||[d,0]);var m=v.selectAll("g.nv-wrap.nv-sparkline").data([e]),g=m.enter().append("g").attr("class","nvd3 nv-wrap nv-sparkline"),b=g.append("g"),w=m.select("g");m.attr("transform","translate("+t.left+","+t.top+")");var E=m.selectAll("path").data(function(e){return[e]});E.enter().append("path"),E.exit().remove(),E.style("stroke",function(e,t){return e.color||f(e,t)}).attr("d",d3.svg.line().x(function(e,t){return s(u(e,t))}).y(function(e,t){return o(a(e,t))}));var S=m.selectAll("circle.nv-point").data(function(e){function n(t){if(t!=-1){var n=e[t];return n.pointIndex=t,n}return null}var t=e.map(function(e,t){return a(e,t)}),r=n(t.lastIndexOf(o.domain()[1])),i=n(t.indexOf(o.domain()[0])),s=n(t.length-1);return[i,r,s].filter(function(e){return e!=null})});S.enter().append("circle"),S.exit().remove(),S.attr("cx",function(e,t){return s(u(e,e.pointIndex))}).attr("cy",function(e,t){return o(a(e,e.pointIndex))}).attr("r",2).attr("class",function(e,t){return u(e,e.pointIndex)==s.domain()[1]?"nv-point nv-currentValue":a(e,e.pointIndex)==o.domain()[0]?"nv-point nv-minValue":"nv-point nv-maxValue"})}),d}var t={top:2,right:0,bottom:2,left:0},n=400,r=32,i=!0,s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=e.utils.getColor(["#000"]),l,c,h,p;return d.options=e.utils.optionsFunc.bind(d),d.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,d):t},d.width=function(e){return arguments.length?(n=e,d):n},d.height=function(e){return arguments.length?(r=e,d):r},d.x=function(e){return arguments.length?(u=d3.functor(e),d):u},d.y=function(e){return arguments.length?(a=d3.functor(e),d):a},d.xScale=function(e){return arguments.length?(s=e,d):s},d.yScale=function(e){return arguments.length?(o=e,d):o},d.xDomain=function(e){return arguments.length?(l=e,d):l},d.yDomain=function(e){return arguments.length?(c=e,d):c},d.xRange=function(e){return arguments.length?(h=e,d):h},d.yRange=function(e){return arguments.length?(p=e,d):p},d.animate=function(e){return arguments.length?(i=e,d):i},d.color=function(t){return arguments.length?(f=e.utils.getColor(t),d):f},d},e.models.sparklinePlus=function(){function v(e){return e.each(function(c){function O(){if(a)return;var e=C.selectAll(".nv-hoverValue").data(u),r=e.enter().append("g").attr("class","nv-hoverValue").style("stroke-opacity",0).style("fill-opacity",0);e.exit().style("stroke-opacity",0).style("fill-opacity",0).remove(),e.attr("transform",function(e){return"translate("+s(t.x()(c[e],e))+",0)"}).style("stroke-opacity",1).style("fill-opacity",1);if(!u.length)return;r.append("line").attr("x1",0).attr("y1",-n.top).attr("x2",0).attr("y2",b),r.append("text").attr("class","nv-xValue").attr("x",-6).attr("y",-n.top).attr("text-anchor","end").attr("dy",".9em"),C.select(".nv-hoverValue .nv-xValue").text(f(t.x()(c[u[0]],u[0]))),r.append("text").attr("class","nv-yValue").attr("x",6).attr("y",-n.top).attr("text-anchor","start").attr("dy",".9em"),C.select(".nv-hoverValue .nv-yValue").text(l(t.y()(c[u[0]],u[0])))}function M(){function r(e,n){var r=Math.abs(t.x()(e[0],0)-n),i=0;for(var s=0;s2){var h=M.yScale().invert(i.mouseY),p=Infinity,d=null;c.forEach(function(e,t){h=Math.abs(h);var n=Math.abs(e.stackedValue.y0),r=Math.abs(e.stackedValue.y);if(h>=n&&h<=r+n){d=t;return}}),d!=null&&(c[d].highlight=!0)}var v=n.tickFormat()(M.x()(s,a)),m=t.style()=="expand"?function(e,t){return d3.format(".1%")(e)}:function(e,t){return r.tickFormat()(e)};o.tooltip.position({left:f+u.left,top:i.mouseY+u.top}).chartContainer(_.parentNode).enabled(g).valueFormatter(m).data({value:v,series:c})(),o.renderGuideLine(f)}),o.dispatch.on("elementMouseout",function(e){N.tooltipHide(),t.clearHighlights()}),N.on("tooltipShow",function(e){g&&O(e,_.parentNode)}),N.on("changeState",function(e){typeof e.disabled!="undefined"&&y.length===e.disabled.length&&(y.forEach(function(t,n){t.disabled=e.disabled[n]}),S.disabled=e.disabled),typeof e.style!="undefined"&&t.style(e.style),M.update()})}),M}var t=e.models.stackedArea(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.interactiveGuideline(),u={top:30,right:25,bottom:50,left:60},a=null,f=null,l=e.utils.defaultColor(),c=!0,h=!0,p=!0,d=!0,v=!1,m=!1,g=!0,y=function(e,t,n,r,i){return"

    "+e+"

    "+"

    "+n+" on "+t+"

    "},b,w,E=d3.format(",.2f"),S={style:t.style()},x=null,T="No Data Available.",N=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),C=250,k=["Stacked","Stream","Expanded"],L={},A=0;n.orient("bottom").tickPadding(7),r.orient(v?"right":"left"),s.updateState(!1);var O=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=y(i.series.key,a,f,i,M);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("tooltipShow",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],N.tooltipShow(e)}),t.dispatch.on("tooltipHide",function(e){N.tooltipHide(e)}),N.on("tooltipHide",function(){g&&e.tooltip.cleanup()}),M.dispatch=N,M.stacked=t,M.legend=i,M.controls=s,M.xAxis=n,M.yAxis=r,M.interactiveLayer=o,d3.rebind(M,t,"x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","sizeDomain","interactive","useVoronoi","offset","order","style","clipEdge","forceX","forceY","forceSize","interpolate"),M.options=e.utils.optionsFunc.bind(M),M.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,M):u},M.width=function(e){return arguments.length?(a=e,M):a},M.height=function(e){return arguments.length?(f=e,M):f},M.color=function(n){return arguments.length?(l=e.utils.getColor(n),i.color(l),t.color(l),M):l},M.showControls=function(e){return arguments.length?(c=e,M):c},M.showLegend=function(e){return arguments.length?(h=e,M):h},M.showXAxis=function(e){return arguments.length?(p=e,M):p},M.showYAxis=function(e){return arguments.length?(d=e,M):d},M.rightAlignYAxis=function(e){return arguments.length?(v=e,r.orient(e?"right":"left"),M):v},M.useInteractiveGuideline=function(e){return arguments.length?(m=e,e===!0&&(M.interactive(!1),M.useVoronoi(!1)),M):m},M.tooltip=function(e){return arguments.length?(y=e,M):y},M.tooltips=function(e){return arguments.length?(g=e,M):g},M.tooltipContent=function(e){return arguments.length?(y=e,M):y},M.state=function(e){return arguments.length?(S=e,M):S},M.defaultState=function(e){return arguments.length?(x=e,M):x},M.noData=function(e){return arguments.length?(T=e,M):T},M.transitionDuration=function(e){return arguments.length?(A=e,M):A},M.controlsData=function(e){return arguments.length?(k=e,M):k},M.controlLabels=function(e){return arguments.length?typeof e!="object"?L:(L=e,M):L},r.setTickFormat=r.tickFormat,r.tickFormat=function(e){return arguments.length?(E=e,r):E},M}}(),define("plugin/plugins/nvd3/nv.d3",function(){}),define("plugin/charts/nvd3/common/config",["plugin/charts/forms/default","plugin/plugins/nvd3/nv.d3"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"NVD3",tag:"svg",keywords:"small",query_limit:500})}),define("plugin/charts/nvd3/bar/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_stacked/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stacked",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_horizontal/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Horizontal",category:"Bar diagrams",settings:{x_axis_type:{init:"hide"}},columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_horizontal_stacked/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stacked horizontal",category:"Bar diagrams",settings:{x_axis_type:{init:"hide"}},columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/line_focus/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line with focus",category:"Others",zoomable:"native",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/pie/config",["plugin/plugins/nvd3/nv.d3"],function(){return $.extend(!0,{},{title:"Pie chart",category:"Area charts",library:"NVD3",tag:"svg",keywords:"small",columns:{label:{title:"Labels",is_label:!0,is_auto:!0},y:{title:"Values",is_numeric:!0}},settings:{main_separator:{type:"separator",title:"Pie chart settings"},donut_ratio:{title:"Donut ratio",info:"Determine how large the donut hole will be.",type:"select",init:"0.5",data:[{label:"50%",value:"0.5"},{label:"25%",value:"0.25"},{label:"10%",value:"0.10"},{label:"0%",value:"0"}]},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},label_separator:{type:"separator",title:"Label settings"},label_type:{title:"Donut label",info:"What would you like to show for each slice?",type:"select",init:"percent",data:[{label:"-- Nothing --",value:"hide",hide:"label_outside"},{label:"Label column",value:"key",show:"label_outside"},{label:"Value column",value:"value",show:"label_outside"},{label:"Percentage",value:"percent",show:"label_outside"}]},label_outside:{title:"Show outside",info:"Would you like to show labels outside the donut?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{init:"true",hide:!0}}})}),define("plugin/charts/nvd3/stackedarea_full/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Expanded",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea_stream/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stream",category:"Area charts",zoomable:!0,keywords:"default small",showmaxmin:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/histogram/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogram",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{x_axis_label:{init:"Values"},y_axis_label:{init:"Density"},y_axis_type:{init:"f"},y_axis_precision:{init:".2"}}})}),define("plugin/charts/nvd3/line/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/scatter/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/common/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"jqPlot",tag:"div",zoomable:!0,keywords:"medium",query_limit:1e4,settings:{separator_grid:{title:"Grids",type:"separator"},x_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the X axis?",type:"radiobutton",init:"false",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]},y_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the Y axis?",type:"radiobutton",init:"true",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]}}})}),define("plugin/charts/jqplot/bar/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/line/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/scatter/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}},settings:{x_axis_grid:{init:"true"}}})}),define("plugin/charts/jqplot/boxplot/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Box plot",category:"Data processing (requires 'charts' tool from Toolshed)",library:"jqPlot",tag:"div",execute:"boxplot",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{show_legend:{init:"false"}}})}),define("plugin/charts/jqplot/histogram_discrete/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Discrete Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogramdiscrete",keywords:"small medium large",columns:{x:{title:"Observations",is_label:!0}},settings:{x_axis_label:{init:"Breaks"},y_axis_label:{init:"Density"}}})}),define("plugin/charts/others/heatmap/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"Heatmap",category:"Others",query_limit:1e3,library:"Custom",tag:"svg",keywords:"small",zoomable:!0,columns:{x:{title:"Column labels",is_label:!0,is_numeric:!0,is_unique:!0},y:{title:"Row labels",is_label:!0,is_numeric:!0,is_unique:!0},z:{title:"Observation",is_numeric:!0}},settings:{use_panels:{init:"true",hide:!0},color_set:{title:"Color scheme",info:"Select a color scheme for your heatmap",type:"select",init:"jet",data:[{label:"Cold-to-Hot",value:"hot"},{label:"Cool",value:"cool"},{label:"Copper",value:"copper"},{label:"Gray scale",value:"gray"},{label:"Jet",value:"jet"},{label:"No-Green",value:"no_green"},{label:"Ocean",value:"ocean"},{label:"Polar",value:"polar"},{label:"Red-to-Green",value:"redgreen"},{label:"Red-to-green (saturated)",value:"red2green"},{label:"Relief",value:"relief"},{label:"Seismograph",value:"seis"},{label:"Sealand",value:"sealand"},{label:"Split",value:"split"},{label:"Wysiwyg",value:"wysiwyg"}]},url_template:{title:"Url template",info:"Enter a url to link the labels with external sources. Use __LABEL__ as placeholder.",type:"text",init:"",placeholder:"http://someurl.com?id=__LABEL__"}}})}),define("plugin/charts/others/heatmap_cluster/config",["plugin/charts/others/heatmap/config"],function(e){return $.extend(!0,{},e,{title:"Clustered Heatmap",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"heatmap",keywords:"small medium large"})}),define("plugin/charts/types",["plugin/charts/nvd3/bar/config","plugin/charts/nvd3/bar_stacked/config","plugin/charts/nvd3/bar_horizontal/config","plugin/charts/nvd3/bar_horizontal_stacked/config","plugin/charts/nvd3/line_focus/config","plugin/charts/nvd3/pie/config","plugin/charts/nvd3/stackedarea_full/config","plugin/charts/nvd3/stackedarea_stream/config","plugin/charts/nvd3/histogram/config","plugin/charts/nvd3/line/config","plugin/charts/nvd3/scatter/config","plugin/charts/nvd3/stackedarea/config","plugin/charts/jqplot/bar/config","plugin/charts/jqplot/line/config","plugin/charts/jqplot/scatter/config","plugin/charts/jqplot/boxplot/config","plugin/charts/jqplot/histogram_discrete/config","plugin/charts/others/heatmap/config","plugin/charts/others/heatmap_cluster/config"],function(e,t,n,r,i,s,o,u,a,f,l,c,h,p,d,v,m,g,y){return Backbone.Model.extend({defaults:{nvd3_bar:e,nvd3_bar_stacked:t,nvd3_bar_horizontal:n,nvd3_bar_horizontal_stacked:r,nvd3_line_focus:i,nvd3_stackedarea:c,nvd3_stackedarea_full:o,nvd3_stackedarea_stream:u,nvd3_pie:s,nvd3_line:f,nvd3_scatter:l,nvd3_histogram:a,jqplot_bar:h,jqplot_histogram_discrete:m,jqplot_line:p,jqplot_scatter:d,jqplot_boxplot:v,others_heatmap:g,others_heatmap_cluster:y}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","plugin/library/ui","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/library/storage","plugin/library/deferred","plugin/views/viewer","plugin/views/editor","plugin/models/config","plugin/models/chart","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c,h){return Backbone.View.extend({initialize:function(t){this.options=t,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new l,this.types=new h,this.chart=new c,this.jobs=new i(this),this.datasets=new s(this),this.storage=new o(this),this.deferred=new u,this.viewer_view=new a(this),this.editor_view=new f(this),this.$el.append(this.viewer_view.$el),this.$el.append(this.editor_view.$el);if(!this.storage.load())this.go("editor");else{this.go("viewer");var n=this;this.deferred.execute(function(){n.chart.trigger("redraw")})}},go:function(e){$(".tooltip").hide();switch(e){case"editor":this.editor_view.show(),this.viewer_view.hide();break;case"viewer":this.editor_view.hide(),this.viewer_view.show()}},chartPath:function(e){var t=e.split(/_(.+)/);return t.length>=2?t[0]+"/"+t[1]:(console.debug("FAILED App:chartPath() - Invalid format: "+e),undefined)}})}); \ No newline at end of file diff --git a/config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js b/config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js index 873498ee475..061e25803d9 100644 --- a/config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js @@ -1,9 +1,10 @@ // dependencies define(['plugin/charts/jqplot/common/plot-config', 'plugin/charts/tools'], function(configmaker, Tools) { -// widget -return Backbone.View.extend( -{ +/** + * This is the common wrapper for jqplot based visualizations. + */ +return Backbone.View.extend({ // initialize initialize: function(app, options) { // get parameters diff --git a/config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js b/config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js index 9a5f1df9ae8..e9dc10b1895 100644 --- a/config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js @@ -1,9 +1,10 @@ // dependencies define(['plugin/charts/tools'], function(Tools) { -// widget -return Backbone.View.extend( -{ +/** + * This is the common wrapper for nvd3 based visualizations. + */ +return Backbone.View.extend({ // initialize initialize: function(app, options) { // get parameters @@ -97,6 +98,7 @@ return Backbone.View.extend( } }); + // return return true; }, diff --git a/config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js b/config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js index 9f2f160a28b..c665c4f0b87 100644 --- a/config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js @@ -28,7 +28,7 @@ return Backbone.View.extend( chart.state('ok', 'Pie chart has been drawn.'); // unregister process - chart.deferred.done(process_id); + app.deferred.done(process_id); } // request data diff --git a/config/plugins/visualizations/charts/static/charts/tools.js b/config/plugins/visualizations/charts/static/charts/tools.js index f00f7608b35..6ff147ed527 100644 --- a/config/plugins/visualizations/charts/static/charts/tools.js +++ b/config/plugins/visualizations/charts/static/charts/tools.js @@ -2,8 +2,7 @@ define(['utils/utils'], function(Utils) { // render -function panelHelper (app, options) -{ +function panelHelper (app, options) { // link this var self = this; @@ -42,7 +41,7 @@ function panelHelper (app, options) } // unregister process - chart.deferred.done(process_id); + app.deferred.done(process_id); } catch (err) { // log console.debug('FAILED: Tools::panelHelper() - ' + err); @@ -51,7 +50,7 @@ function panelHelper (app, options) chart.state('failed', err); // unregister process - chart.deferred.done(process_id); + app.deferred.done(process_id); } }; diff --git a/config/plugins/visualizations/charts/static/library/datasets.js b/config/plugins/visualizations/charts/static/library/datasets.js index accd1c61152..4b892cab91b 100644 --- a/config/plugins/visualizations/charts/static/library/datasets.js +++ b/config/plugins/visualizations/charts/static/library/datasets.js @@ -1,7 +1,9 @@ // dependencies define(['utils/utils'], function(Utils) { -// widget +/** + * This class handles, formats and caches datasets. + */ return Backbone.Collection.extend( { // list of datasets @@ -11,8 +13,7 @@ return Backbone.Collection.extend( cache: {}, // initialize - initialize: function(app, options) - { + initialize: function(app, options){ // link app this.app = app; diff --git a/config/plugins/visualizations/charts/static/library/deferred.js b/config/plugins/visualizations/charts/static/library/deferred.js index 5bff7cb5e8f..a68d429fe2a 100644 --- a/config/plugins/visualizations/charts/static/library/deferred.js +++ b/config/plugins/visualizations/charts/static/library/deferred.js @@ -1,9 +1,10 @@ // dependencies define(['utils/utils'], function(Utils) { -// deferred process handler -return Backbone.Model.extend( -{ +/** + * This class handles deferred processes. It makes it easy to handle multiple and overlapping sets of deferred processes. + */ +return Backbone.Model.extend({ // queue queue: [], @@ -14,8 +15,7 @@ return Backbone.Model.extend( counter: 0, // initialize - initialize: function() - { + initialize: function(){ // loop through queue and check states this.on('refresh', function() { for (var index in this.queue) { diff --git a/config/plugins/visualizations/charts/static/library/jobs.js b/config/plugins/visualizations/charts/static/library/jobs.js index 0e558873f7a..b59b34a04ed 100644 --- a/config/plugins/visualizations/charts/static/library/jobs.js +++ b/config/plugins/visualizations/charts/static/library/jobs.js @@ -1,9 +1,10 @@ // dependencies define(['utils/utils'], function(Utils) { -// widget -return Backbone.Model.extend( -{ +/** + * This class handles job submissions to the charts tool. + */ +return Backbone.Model.extend({ // initialize initialize: function(app, options) { // link app diff --git a/config/plugins/visualizations/charts/static/library/screenshot.js b/config/plugins/visualizations/charts/static/library/screenshot.js index 10169d5591e..4cf6320e0a6 100644 --- a/config/plugins/visualizations/charts/static/library/screenshot.js +++ b/config/plugins/visualizations/charts/static/library/screenshot.js @@ -1,4 +1,6 @@ -// dependencies +/** + * This class enables users to export/download a chart as PNG, SVG or PDF. + */ define(["libs/underscore"], function(_) { // // PNG export diff --git a/config/plugins/visualizations/charts/static/library/storage.js b/config/plugins/visualizations/charts/static/library/storage.js index 020f8659014..6d909d8d2a0 100644 --- a/config/plugins/visualizations/charts/static/library/storage.js +++ b/config/plugins/visualizations/charts/static/library/storage.js @@ -1,9 +1,10 @@ // dependencies -define(['utils/utils', 'plugin/models/chart', 'plugin/models/group'], function(Utils, Chart, Group) { +define(['utils/utils', 'plugin/models/chart', 'plugin/models/group', 'mvc/visualization/visualization-model'], function(Utils, Chart, Group) { -// collection -return Backbone.Model.extend( -{ +/** + * This class saves and loads a chart through the api. + */ +return Backbone.Model.extend({ // viz model vis: null, @@ -44,7 +45,6 @@ return Backbone.Model.extend( // pack and save nested chart model save: function() { - // link chart var chart = this.app.chart; diff --git a/config/plugins/visualizations/charts/static/library/ui-button-menu.js b/config/plugins/visualizations/charts/static/library/ui-button-menu.js index 7f0c057d5c9..70af01c6027 100644 --- a/config/plugins/visualizations/charts/static/library/ui-button-menu.js +++ b/config/plugins/visualizations/charts/static/library/ui-button-menu.js @@ -1,8 +1,9 @@ // dependencies -define(['utils/utils'], - function(Utils) { +define(['utils/utils'], function(Utils) { -// return button menu +/** + * This class creates a button with dropdown menu. It extends the functionality of the Ui.ButtonIcon class. + */ return Backbone.View.extend({ // main options optionsDefault: { diff --git a/config/plugins/visualizations/charts/static/library/ui-select.js b/config/plugins/visualizations/charts/static/library/ui-select.js index bbabad62527..ffa4e537500 100644 --- a/config/plugins/visualizations/charts/static/library/ui-select.js +++ b/config/plugins/visualizations/charts/static/library/ui-select.js @@ -1,9 +1,10 @@ // dependencies define(['utils/utils'], function(Utils) { -// plugin -var View = Backbone.View.extend( -{ +/** + * This class creates/wraps a default html select field as backbone class. + */ +var View = Backbone.View.extend({ // options optionsDefault : { id : '', diff --git a/config/plugins/visualizations/charts/static/library/ui-table-form.js b/config/plugins/visualizations/charts/static/library/ui-table-form.js index e6fbedf6c05..f34dff9c9e6 100644 --- a/config/plugins/visualizations/charts/static/library/ui-table-form.js +++ b/config/plugins/visualizations/charts/static/library/ui-table-form.js @@ -2,9 +2,10 @@ define(['plugin/library/ui-table', 'plugin/library/ui', 'utils/utils'], function(Table, Ui, Utils) { -// widget -var View = Backbone.View.extend( -{ +/** + * This class takes a dictionary as input an creates an input form. It uses the Ui.Table element to organize and format the form elements. + */ +var View = Backbone.View.extend({ // options optionsDefault: { title : '', diff --git a/config/plugins/visualizations/charts/static/library/ui-table.js b/config/plugins/visualizations/charts/static/library/ui-table.js index 565f3747eec..83d5a094a9e 100644 --- a/config/plugins/visualizations/charts/static/library/ui-table.js +++ b/config/plugins/visualizations/charts/static/library/ui-table.js @@ -1,7 +1,10 @@ +// dependencies define(['utils/utils'], function(Utils) { -var View = Backbone.View.extend( -{ +/** + * This class creates a ui table element. + */ +var View = Backbone.View.extend({ // current row row: null, diff --git a/config/plugins/visualizations/charts/static/library/ui.js b/config/plugins/visualizations/charts/static/library/ui.js index 6f46ae22086..0d840491972 100644 --- a/config/plugins/visualizations/charts/static/library/ui.js +++ b/config/plugins/visualizations/charts/static/library/ui.js @@ -2,9 +2,12 @@ define(['utils/utils', 'plugin/library/ui-select', 'plugin/library/ui-button-menu', 'mvc/ui/ui-modal'], function(Utils, Select, ButtonMenu, Modal) { +/** + * This class contains backbone wrappers for basic ui elements such as Images, Labels, Buttons, Input fields etc. + */ + // plugin -var Image = Backbone.View.extend( -{ +var Image = Backbone.View.extend({ // options optionsDefault: { url : '', @@ -27,8 +30,7 @@ var Image = Backbone.View.extend( }); // plugin -var Label = Backbone.View.extend( -{ +var Label = Backbone.View.extend({ // options optionsDefault: { title : '', @@ -61,8 +63,7 @@ var Label = Backbone.View.extend( }); // plugin -var Icon = Backbone.View.extend( -{ +var Icon = Backbone.View.extend({ // options optionsDefault: { float : 'right', @@ -95,8 +96,7 @@ var Icon = Backbone.View.extend( }); // plugin -var Button = Backbone.View.extend( -{ +var Button = Backbone.View.extend({ // options optionsDefault: { id : null, @@ -134,8 +134,7 @@ var Button = Backbone.View.extend( }); // plugin -var ButtonIcon = Backbone.View.extend( -{ +var ButtonIcon = Backbone.View.extend({ // options optionsDefault: { id : null, @@ -188,8 +187,7 @@ var ButtonIcon = Backbone.View.extend( }); // plugin -var Anchor = Backbone.View.extend( -{ +var Anchor = Backbone.View.extend({ // options optionsDefault: { title : '', @@ -215,8 +213,7 @@ var Anchor = Backbone.View.extend( }); // plugin -var Message = Backbone.View.extend( -{ +var Message = Backbone.View.extend({ // options optionsDefault: { message : '', @@ -268,8 +265,7 @@ var Message = Backbone.View.extend( }); // plugin -var Searchbox = Backbone.View.extend( -{ +var Searchbox = Backbone.View.extend({ // options optionsDefault: { onclick : null, @@ -308,8 +304,7 @@ var Searchbox = Backbone.View.extend( }); // plugin -var Input = Backbone.View.extend( -{ +var Input = Backbone.View.extend({ // options optionsDefault: { value : '', @@ -362,8 +357,7 @@ var Input = Backbone.View.extend( }); // plugin -var Textarea = Backbone.View.extend( -{ +var Textarea = Backbone.View.extend({ // options optionsDefault: { value : '', @@ -416,8 +410,7 @@ var Textarea = Backbone.View.extend( }); // plugin -var RadioButton = Backbone.View.extend( -{ +var RadioButton = Backbone.View.extend({ // options optionsDefault: { value : '', @@ -503,19 +496,19 @@ var RadioButton = Backbone.View.extend( // return return { - Label : Label, - Button : Button, - Icon : Icon, - ButtonIcon : ButtonIcon, - Input : Input, - Anchor : Anchor, - Message : Message, - Searchbox : Searchbox, - Select : Select, - ButtonMenu : ButtonMenu, - Modal: Modal, - Textarea: Textarea, - Image: Image, - RadioButton: RadioButton + Anchor : Anchor, + Button : Button, + ButtonIcon : ButtonIcon, + ButtonMenu : ButtonMenu, + Icon : Icon, + Image : Image, + Input : Input, + Label : Label, + Message : Message, + Modal : Modal, + RadioButton : RadioButton, + Searchbox : Searchbox, + Select : Select, + Textarea : Textarea } }); diff --git a/config/plugins/visualizations/charts/static/models/chart.js b/config/plugins/visualizations/charts/static/models/chart.js index 43f5af7f735..b240e450056 100644 --- a/config/plugins/visualizations/charts/static/models/chart.js +++ b/config/plugins/visualizations/charts/static/models/chart.js @@ -1,11 +1,8 @@ // dependencies -define(['plugin/models/groups', 'plugin/library/deferred', 'mvc/visualization/visualization-model'], - function(Groups, Deferred) { - +define(['plugin/models/groups'], function(Groups) { // model -return Backbone.Model.extend( -{ +return Backbone.Model.extend({ // defaults defaults : { id : null, @@ -23,7 +20,6 @@ return Backbone.Model.extend( initialize: function(options) { this.groups = new Groups(); this.settings = new Backbone.Model(); - this.deferred = new Deferred(); }, // reset diff --git a/config/plugins/visualizations/charts/static/models/config.js b/config/plugins/visualizations/charts/static/models/config.js index f8d01b36dc4..2f30ffe1310 100644 --- a/config/plugins/visualizations/charts/static/models/config.js +++ b/config/plugins/visualizations/charts/static/models/config.js @@ -2,8 +2,7 @@ define([], function() { // model -return Backbone.Model.extend( -{ +return Backbone.Model.extend({ // options defaults : { query_limit : 500, diff --git a/config/plugins/visualizations/charts/static/models/group.js b/config/plugins/visualizations/charts/static/models/group.js index 3b69963f8cc..f6043867157 100644 --- a/config/plugins/visualizations/charts/static/models/group.js +++ b/config/plugins/visualizations/charts/static/models/group.js @@ -2,8 +2,7 @@ define([], function() { // model -return Backbone.Model.extend( -{ +return Backbone.Model.extend({ // options defaults : { key : 'Data label', @@ -11,8 +10,7 @@ return Backbone.Model.extend( }, // reset - reset: function() - { + reset: function(){ this.clear({silent: true}).set(this.defaults); this.trigger('reset', this); } diff --git a/config/plugins/visualizations/charts/static/models/groups.js b/config/plugins/visualizations/charts/static/models/groups.js index 6196880deba..71c3f7da97b 100644 --- a/config/plugins/visualizations/charts/static/models/groups.js +++ b/config/plugins/visualizations/charts/static/models/groups.js @@ -2,8 +2,7 @@ define(['plugin/models/group'], function(Group) { // collection -return Backbone.Collection.extend( -{ +return Backbone.Collection.extend({ model: Group }); diff --git a/config/plugins/visualizations/charts/static/views/editor.js b/config/plugins/visualizations/charts/static/views/editor.js index 9ce708a5d9c..85f49d42a51 100644 --- a/config/plugins/visualizations/charts/static/views/editor.js +++ b/config/plugins/visualizations/charts/static/views/editor.js @@ -4,18 +4,13 @@ define(['mvc/ui/ui-tabs', 'plugin/library/ui', 'mvc/ui/ui-portlet', 'utils/utils 'plugin/views/group', 'plugin/views/settings', 'plugin/views/types'], function(Tabs, Ui, Portlet, Utils, Chart, Group, GroupView, SettingsView, TypesView) { -// widget -return Backbone.View.extend( -{ - // defaults options - optionsDefault: { - header : true, - content : 'No content available.' - }, - +/** + * The charts editor holds the tabs for selecting chart types, chart configuration + * and data group selections. + */ +return Backbone.View.extend({ // initialize - initialize: function(app, options) - { + initialize: function(app, options){ // link this var self = this; @@ -25,9 +20,6 @@ return Backbone.View.extend( // get current chart object this.chart = this.app.chart; - // configure options - this.options = Utils.merge(options, this.optionsDefault); - // message element this.message = new Ui.Message(); @@ -49,7 +41,7 @@ return Backbone.View.extend( tooltip : 'Return to Viewer', title : 'Cancel', onclick : function() { - // show viewport + // show viewer/viewport self.app.go('viewer'); // reset chart @@ -200,7 +192,7 @@ return Backbone.View.extend( this.title.value(title); }, - // update + // refresh group _refreshGroupKey: function() { var self = this; var counter = 0; @@ -213,7 +205,7 @@ return Backbone.View.extend( }); }, - // new group + // add group model _addGroupModel: function() { var group = new Group({ id : Utils.uuid() @@ -222,7 +214,7 @@ return Backbone.View.extend( return group; }, - // add group + // add group tab _addGroup: function(group) { // link this var self = this; @@ -319,7 +311,7 @@ return Backbone.View.extend( // wait until chart is ready var self = this; - this.chart.deferred.execute(function() { + this.app.deferred.execute(function() { // save self.app.storage.save(); diff --git a/config/plugins/visualizations/charts/static/views/group.js b/config/plugins/visualizations/charts/static/views/group.js index 2c932cc32e8..b7fc6666843 100644 --- a/config/plugins/visualizations/charts/static/views/group.js +++ b/config/plugins/visualizations/charts/static/views/group.js @@ -2,9 +2,10 @@ define(['plugin/library/ui-table', 'plugin/library/ui', 'utils/utils'], function(Table, Ui, Utils) { -// widget -return Backbone.View.extend( -{ +/** + * This class renders the data group selection fields. + */ +return Backbone.View.extend({ // initialize initialize: function(app, options) { // link app @@ -59,7 +60,7 @@ return Backbone.View.extend( this._refreshGroup(); }, - // update dataset + // update group selection table _refreshTable: function() { // identify datasets var dataset_id = this.chart.get('dataset_id'); @@ -116,7 +117,7 @@ return Backbone.View.extend( this.chart.state('wait', 'Loading metadata...'); // register process - var process_id = this.chart.deferred.register(); + var process_id = this.app.deferred.register(); // request dictionary var request_dictionary = { @@ -131,7 +132,7 @@ return Backbone.View.extend( self.chart.state('ok', 'Metadata initialized...'); // unregister - self.chart.deferred.done(process_id); + self.app.deferred.done(process_id); } }; diff --git a/config/plugins/visualizations/charts/static/views/settings.js b/config/plugins/visualizations/charts/static/views/settings.js index 0fa3d984a15..3cd3820b949 100644 --- a/config/plugins/visualizations/charts/static/views/settings.js +++ b/config/plugins/visualizations/charts/static/views/settings.js @@ -2,9 +2,10 @@ define(['plugin/library/ui', 'plugin/library/ui-table-form', 'utils/utils'], function(Ui, TableForm, Utils) { -// widget -return Backbone.View.extend( -{ +/** + * This class renders the chart configuration form. + */ +return Backbone.View.extend({ // initialize initialize: function(app, options) { // link app @@ -36,7 +37,7 @@ return Backbone.View.extend( // get settings var chart_definition = this.chart.definition; - // check if dataset is available + // check if chart definition is available if (!chart_definition) { return; } diff --git a/config/plugins/visualizations/charts/static/views/types.js b/config/plugins/visualizations/charts/static/views/types.js index d9ac4a185e7..b76d4711cab 100644 --- a/config/plugins/visualizations/charts/static/views/types.js +++ b/config/plugins/visualizations/charts/static/views/types.js @@ -1,7 +1,10 @@ +// dependencies define(['utils/utils', 'plugin/library/ui'], function(Utils, Ui) { -return Backbone.View.extend( -{ +/** + * This class renders the chart type selection grid. + */ +return Backbone.View.extend({ // defaults options optionsDefault: { onchange : null, @@ -16,7 +19,6 @@ return Backbone.View.extend( // initialize initialize : function(app, options) { - // link this var self = this; diff --git a/config/plugins/visualizations/charts/static/views/viewer.js b/config/plugins/visualizations/charts/static/views/viewer.js index 64803c72060..af2fcfac146 100644 --- a/config/plugins/visualizations/charts/static/views/viewer.js +++ b/config/plugins/visualizations/charts/static/views/viewer.js @@ -1,14 +1,14 @@ // dependencies define(['utils/utils', 'plugin/library/ui', 'mvc/ui/ui-portlet', - 'plugin/models/group', 'plugin/views/viewport', 'plugin/library/screenshot'], - function(Utils, Ui, Portlet, Group, ViewportView, Screenshot) { + 'plugin/views/viewport', 'plugin/library/screenshot'], + function(Utils, Ui, Portlet, ViewportView, Screenshot) { -// widget -return Backbone.View.extend( -{ +/** + * This class renders the chart viewer which encapsulates the chart viewport. + */ +return Backbone.View.extend({ // initialize - initialize: function(app, options) - { + initialize: function(app, options){ // link app this.app = app; @@ -152,7 +152,7 @@ return Backbone.View.extend( // wait for chart to be ready _wait: function(chart, callback) { // get chart - if (chart.deferred.ready()) { + if (this.app.deferred.ready()) { callback(); } else { this.message.update({message: 'Your chart is currently being processed. Please wait and try again.'}); diff --git a/config/plugins/visualizations/charts/static/views/viewport.js b/config/plugins/visualizations/charts/static/views/viewport.js index ddef4db5d11..41498d837ae 100644 --- a/config/plugins/visualizations/charts/static/views/viewport.js +++ b/config/plugins/visualizations/charts/static/views/viewport.js @@ -2,7 +2,11 @@ define(['mvc/ui/ui-portlet', 'plugin/library/ui', 'utils/utils'], function(Portlet, Ui, Utils) { -// widget +/** + * The viewport creates and manages the dom elements used by the visualization plugins to draw the chart. + * Additionally, this class creates default request strings and request dictionaries parsed to the visualization plugins. + * This is the last class of the charts core classes before handing control over to the visualization plugins. + */ return Backbone.View.extend({ // list of canvas elements @@ -26,7 +30,7 @@ return Backbone.View.extend({ // use full screen for viewer this._fullscreen(this.$el, 100); - // create canvas element + // create container element this._createContainer('div'); // events @@ -126,7 +130,7 @@ return Backbone.View.extend({ var self = this; // register process - var process_id = chart.deferred.register(); + var process_id = this.app.deferred.register(); // identify chart type var chart_type = chart.get('type'); @@ -171,7 +175,7 @@ return Backbone.View.extend({ }); }, function() { - chart.deferred.done(process_id); + this.app.deferred.done(process_id); } ); } else { diff --git a/eggs.ini b/eggs.ini index 5884a50ec80..409cf5a4951 100644 --- a/eggs.ini +++ b/eggs.ini @@ -38,7 +38,7 @@ bioblend = 0.4.2 boto = 2.27.0 decorator = 3.1.2 docutils = 0.7 -drmaa = 0.6 +drmaa = 0.7.6 elementtree = 1.2.6_20050316 Fabric = 1.7.0 GeneTrack = 2.0.0_beta_1 diff --git a/job_conf.xml.sample_advanced b/job_conf.xml.sample_advanced index ad14177b546..e390afbfe26 100644 --- a/job_conf.xml.sample_advanced +++ b/job_conf.xml.sample_advanced @@ -102,6 +102,12 @@ + True + + + diff --git a/lib/galaxy/app.py b/lib/galaxy/app.py index 8b96353bda5..95e4386c60e 100644 --- a/lib/galaxy/app.py +++ b/lib/galaxy/app.py @@ -12,7 +12,6 @@ from galaxy.visualization.genomes import Genomes from galaxy.visualization.data_providers.registry import DataProviderRegistry from galaxy.visualization.registry import VisualizationsRegistry from galaxy.tools.imp_exp import load_history_imp_exp_tools -from galaxy.tools.genome_index import load_genome_index_tools from galaxy.sample_tracking import external_service_types from galaxy.openid.providers import OpenIDProviders from galaxy.tools.data_manager.manager import DataManagers @@ -93,8 +92,6 @@ class UniverseApplication( object, config.ConfiguresGalaxyMixin ): self.datatypes_registry.load_external_metadata_tool( self.toolbox ) # Load history import/export tools. load_history_imp_exp_tools( self.toolbox ) - # Load genome indexer tool. - load_genome_index_tools( self.toolbox ) # visualizations registry: associates resources with visualizations, controls how to render self.visualizations_registry = None if self.config.visualization_plugins_directory: diff --git a/lib/galaxy/datatypes/metadata.py b/lib/galaxy/datatypes/metadata.py index f59981a0eb4..21f74a00dfe 100644 --- a/lib/galaxy/datatypes/metadata.py +++ b/lib/galaxy/datatypes/metadata.py @@ -126,10 +126,21 @@ class MetadataCollection( object ): rval[key] = self.spec[key].param.make_copy( value, target_context=self, source_context=to_copy ) return rval - def from_JSON_dict( self, filename, path_rewriter=None ): + def from_JSON_dict( self, filename=None, path_rewriter=None, json_dict=None ): dataset = self.parent - log.debug( 'loading metadata from file for: %s %s' % ( dataset.__class__.__name__, dataset.id ) ) - JSONified_dict = json.load( open( filename ) ) + if filename is not None: + log.debug( 'loading metadata from file for: %s %s' % ( dataset.__class__.__name__, dataset.id ) ) + JSONified_dict = json.load( open( filename ) ) + elif json_dict is not None: + log.debug( 'loading metadata from dict for: %s %s' % ( dataset.__class__.__name__, dataset.id ) ) + if isinstance( json_dict, basestring ): + JSONified_dict = json.loads( json_dict ) + elif isinstance( json_dict, dict ): + JSONified_dict = json_dict + else: + raise ValueError( "json_dict must be either a dictionary or a string, got %s." % ( type( json_dict ) ) ) + else: + raise ValueError( "You must provide either a filename or a json_dict" ) for name, spec in self.spec.items(): if name in JSONified_dict: from_ext_kwds = {} @@ -143,13 +154,15 @@ class MetadataCollection( object ): #metadata associated with our dataset, we'll delete it from our dataset's metadata dict del dataset._metadata[ name ] - def to_JSON_dict( self, filename ): + def to_JSON_dict( self, filename=None ): #galaxy.model.customtypes.json_encoder.encode() meta_dict = {} dataset_meta_dict = self.parent._metadata for name, spec in self.spec.items(): if name in dataset_meta_dict: meta_dict[ name ] = spec.param.to_external_value( dataset_meta_dict[ name ] ) + if filename is None: + return json.dumps( meta_dict ) json.dump( meta_dict, open( filename, 'wb+' ) ) def __getstate__( self ): diff --git a/lib/galaxy/jobs/__init__.py b/lib/galaxy/jobs/__init__.py index b1f8e444e74..159c0dd340d 100644 --- a/lib/galaxy/jobs/__init__.py +++ b/lib/galaxy/jobs/__init__.py @@ -1181,17 +1181,21 @@ class JobWrapper( object ): out_data = dict( [ ( da.name, da.dataset ) for da in job.output_datasets ] ) inp_data.update( [ ( da.name, da.dataset ) for da in job.input_library_datasets ] ) out_data.update( [ ( da.name, da.dataset ) for da in job.output_library_datasets ] ) + input_ext = 'data' + for _, data in inp_data.items(): + # For loop odd, but sort simulating behavior in galaxy.tools.actions + if not data: + continue + input_ext = data.ext + param_dict = dict( [ ( p.name, p.value ) for p in job.parameters ] ) # why not re-use self.param_dict here? ##dunno...probably should, this causes tools.parameters.basic.UnvalidatedValue to be used in following methods instead of validated and transformed values during i.e. running workflows param_dict = self.tool.params_from_strings( param_dict, self.app ) # Check for and move associated_files self.tool.collect_associated_files(out_data, self.working_directory) - gitd = self.sa_session.query( model.GenomeIndexToolData ).filter_by( job=job ).first() - if gitd: - self.tool.collect_associated_files({'': gitd}, self.working_directory) # Create generated output children and primary datasets and add to param_dict collected_datasets = { 'children': self.tool.collect_child_datasets(out_data, self.working_directory), - 'primary': self.tool.collect_primary_datasets(out_data, self.working_directory) + 'primary': self.tool.collect_primary_datasets(out_data, self.working_directory, input_ext) } param_dict.update({'__collected_datasets__': collected_datasets}) # Certain tools require tasks to be completed after job execution @@ -1241,7 +1245,6 @@ class JobWrapper( object ): self.external_output_metadata.cleanup_external_metadata( self.sa_session ) galaxy.tools.imp_exp.JobExportHistoryArchiveWrapper( self.job_id ).cleanup_after_job( self.sa_session ) galaxy.tools.imp_exp.JobImportHistoryArchiveWrapper( self.app, self.job_id ).cleanup_after_job() - galaxy.tools.genome_index.GenomeIndexToolWrapper( self.job_id ).postprocessing( self.sa_session, self.app ) if delete_files: self.app.object_store.delete(self.get_job(), base_dir='job_work', entire_dir=True, dir_only=True, extra_dir=str(self.job_id)) except: @@ -1344,10 +1347,8 @@ class JobWrapper( object ): dataset_path_rewriter = self.dataset_path_rewriter job = self.get_job() - # Job output datasets are combination of history, library, jeha and gitd datasets. + # Job output datasets are combination of history, library, and jeha datasets. special = self.sa_session.query( model.JobExportHistoryArchive ).filter_by( job=job ).first() - if not special: - special = self.sa_session.query( model.GenomeIndexToolData ).filter_by( job=job ).first() false_path = None results = [] diff --git a/lib/galaxy/jobs/deferred/genome_index.py b/lib/galaxy/jobs/deferred/genome_index.py deleted file mode 100644 index e519a9990d6..00000000000 --- a/lib/galaxy/jobs/deferred/genome_index.py +++ /dev/null @@ -1,43 +0,0 @@ -""" -Module for managing genome transfer jobs. -""" -from __future__ import with_statement - -import logging, shutil, gzip, bz2, zipfile, tempfile, tarfile, sys, os - -from galaxy import eggs -from sqlalchemy import and_ -from data_transfer import * - -log = logging.getLogger( __name__ ) - -__all__ = [ 'GenomeIndexPlugin' ] - -class GenomeIndexPlugin( DataTransfer ): - - def __init__( self, app ): - super( GenomeIndexPlugin, self ).__init__( app ) - self.app = app - self.tool = app.toolbox.tools_by_id['__GENOME_INDEX__'] - self.sa_session = app.model.context.current - - def create_job( self, trans, path, indexes, dbkey, intname ): - params = dict( user=trans.user.id, path=path, indexes=indexes, dbkey=dbkey, intname=intname ) - deferred = trans.app.model.DeferredJob( state = self.app.model.DeferredJob.states.NEW, plugin = 'GenomeIndexPlugin', params = params ) - self.sa_session.add( deferred ) - self.sa_session.flush() - log.debug( 'Job created, id %d' % deferred.id ) - return deferred.id - - def check_job( self, job ): - log.debug( 'Job check' ) - return 'ready' - - def run_job( self, job ): - incoming = dict( path=os.path.abspath( job.params[ 'path' ] ), indexer=job.params[ 'indexes' ][0], user=job.params[ 'user' ] ) - indexjob = self.tool.execute( self, set_output_hid=False, history=None, incoming=incoming, transfer=None, deferred=job ) - job.params[ 'indexjob' ] = indexjob[0].id - job.state = self.app.model.DeferredJob.states.RUNNING - self.sa_session.add( job ) - self.sa_session.flush() - return self.app.model.DeferredJob.states.RUNNING diff --git a/lib/galaxy/jobs/deferred/genome_transfer.py b/lib/galaxy/jobs/deferred/genome_transfer.py deleted file mode 100644 index c88f499f7d5..00000000000 --- a/lib/galaxy/jobs/deferred/genome_transfer.py +++ /dev/null @@ -1,250 +0,0 @@ -""" -Module for managing genome transfer jobs. -""" -from __future__ import with_statement - -import logging, shutil, gzip, bz2, zipfile, tempfile, tarfile, sys - -from galaxy import eggs -from sqlalchemy import and_ - -from galaxy.util.odict import odict -from galaxy.workflow.modules import module_factory -from galaxy.jobs.actions.post import ActionBox - -from galaxy.tools.parameters import visit_input_values -from galaxy.tools.parameters.basic import DataToolParameter -from galaxy.tools.data import ToolDataTableManager - -from galaxy.datatypes.checkers import * -from galaxy.datatypes.sequence import Fasta -from data_transfer import * - -log = logging.getLogger( __name__ ) - -__all__ = [ 'GenomeTransferPlugin' ] - -class GenomeTransferPlugin( DataTransfer ): - - locations = {} - - def __init__( self, app ): - super( GenomeTransferPlugin, self ).__init__( app ) - self.app = app - self.tool = app.toolbox.tools_by_id['__GENOME_INDEX__'] - self.sa_session = app.model.context.current - tdtman = ToolDataTableManager( app.config.tool_data_path ) - xmltree = tdtman.load_from_config_file( app.config.tool_data_table_config_path, app.config.tool_data_path ) - for node in xmltree: - table = node.get('name') - location = node.findall('file')[0].get('path') - self.locations[table] = location - - def create_job( self, trans, url, dbkey, intname, indexes ): - job = trans.app.transfer_manager.new( protocol='http', url=url ) - params = dict( user=trans.user.id, transfer_job_id=job.id, protocol='http', type='init_transfer', url=url, dbkey=dbkey, indexes=indexes, intname=intname, liftover=None ) - deferred = trans.app.model.DeferredJob( state = self.app.model.DeferredJob.states.NEW, plugin = 'GenomeTransferPlugin', params = params ) - self.sa_session.add( deferred ) - self.sa_session.flush() - return deferred.id - - def check_job( self, job ): - if job.params['type'] == 'init_transfer': - if not hasattr(job, 'transfer_job'): - job.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( job.params[ 'transfer_job_id' ] ) ) - else: - self.sa_session.refresh( job.transfer_job ) - if job.transfer_job.state == 'done': - transfer = job.transfer_job - transfer.state = 'downloaded' - job.params['type'] = 'extract_transfer' - self.sa_session.add( job ) - self.sa_session.add( transfer ) - self.sa_session.flush() - return self.job_states.READY - elif job.transfer_job.state == 'running': - return self.job_states.WAIT - elif job.transfer_job.state == 'new': - assert job.params[ 'protocol' ] in [ 'http', 'ftp', 'https' ], 'Unknown protocol %s' % job.params[ 'protocol' ] - self.app.transfer_manager.run( job.transfer_job ) - self.sa_session.add( job.transfer_job ) - self.sa_session.flush() - return self.job_states.WAIT - else: - log.error( "An error occurred while downloading from %s" % job.params[ 'url' ] ) - return self.job_states.INVALID - elif job.params[ 'type' ] == 'extract_transfer': - return self.job_states.READY - - def get_job_status( self, jobid ): - job = self.sa_session.query( self.app.model.DeferredJob ).get( int( jobid ) ) - if 'transfer_job_id' in job.params: - if not hasattr( job, 'transfer_job' ): - job.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( job.params[ 'transfer_job_id' ] ) ) - else: - self.sa_session.refresh( job.transfer_job ) - return job - - def run_job( self, job ): - params = job.params - dbkey = params[ 'dbkey' ] - if not hasattr( job, 'transfer_job' ): - job.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( job.params[ 'transfer_job_id' ] ) ) - else: - self.sa_session.refresh( job.transfer_job ) - transfer = job.transfer_job - if params[ 'type' ] == 'extract_transfer': - CHUNK_SIZE = 2**20 - destpath = os.path.join( self.app.config.get( 'genome_data_path', 'tool-data/genome' ), job.params[ 'dbkey' ], 'seq' ) - destfile = '%s.fa' % job.params[ 'dbkey' ] - destfilepath = os.path.join( destpath, destfile ) - tmpprefix = '%s_%s_download_unzip_' % ( job.params['dbkey'], job.params[ 'transfer_job_id' ] ) - tmppath = os.path.dirname( os.path.abspath( transfer.path ) ) - if not os.path.exists( destpath ): - os.makedirs( destpath ) - protocol = job.params[ 'protocol' ] - data_type = self._check_compress( transfer.path ) - if data_type is None: - sniffer = Fasta() - if sniffer.sniff( transfer.path ): - data_type = 'fasta' - fd, uncompressed = tempfile.mkstemp( prefix=tmpprefix, dir=tmppath, text=False ) - if data_type in [ 'tar.gzip', 'tar.bzip' ]: - fp = open( transfer.path, 'r' ) - tar = tarfile.open( mode = 'r:*', bufsize = CHUNK_SIZE, fileobj = fp ) - files = tar.getmembers() - for filename in files: - z = tar.extractfile(filename) - while 1: - try: - chunk = z.read( CHUNK_SIZE ) - except IOError: - os.close( fd ) - log.error( 'Problem decompressing compressed data' ) - exit() - if not chunk: - break - os.write( fd, chunk ) - os.write( fd, '\n' ) - os.close( fd ) - tar.close() - fp.close() - elif data_type == 'gzip': - compressed = gzip.open( transfer.path, mode = 'rb' ) - while 1: - try: - chunk = compressed.read( CHUNK_SIZE ) - except IOError: - compressed.close() - log.error( 'Problem decompressing compressed data' ) - exit() - if not chunk: - break - os.write( fd, chunk ) - os.close( fd ) - compressed.close() - elif data_type == 'bzip': - compressed = bz2.BZ2File( transfer.path, mode = 'r' ) - while 1: - try: - chunk = compressed.read( CHUNK_SIZE ) - except IOError: - compressed.close() - log.error( 'Problem decompressing compressed data' ) - exit() - if not chunk: - break - os.write( fd, chunk ) - os.close( fd ) - compressed.close() - elif data_type == 'zip': - uncompressed_name = None - unzipped = False - z = zipfile.ZipFile( transfer.path ) - z.debug = 3 - for name in z.namelist(): - if name.endswith('/'): - continue - zipped_file = z.open( name ) - while 1: - try: - chunk = zipped_file.read( CHUNK_SIZE ) - except IOError: - os.close( fd ) - log.error( 'Problem decompressing zipped data' ) - return self.app.model.DeferredJob.states.INVALID - if not chunk: - break - os.write( fd, chunk ) - zipped_file.close() - os.close( fd ) - z.close() - elif data_type == 'fasta': - uncompressed = transfer.path - else: - job.state = self.app.model.DeferredJob.states.INVALID - log.error( "Unrecognized compression format for file %s." % transfer.path ) - self.sa_session.add( job ) - self.sa_session.flush() - return - shutil.move( uncompressed, destfilepath ) - if os.path.exists( transfer.path ): - os.remove( transfer.path ) - os.chmod( destfilepath, 0644 ) - fastaline = '\t'.join( [ dbkey, dbkey, params[ 'intname' ], os.path.abspath( destfilepath ) ] ) - self._add_line( 'all_fasta', fastaline ) - if params[ 'indexes' ] is not None: - job.state = self.app.model.DeferredJob.states.WAITING - job.params[ 'indexjobs' ] = [] - else: - job.state = self.app.model.DeferredJob.states.OK - job.params[ 'type' ] = 'finish_transfer' - transfer.path = os.path.abspath(destfilepath) - transfer.state = 'done' - self.sa_session.add( job ) - self.sa_session.add( transfer ) - if transfer.state == 'done': - if params[ 'indexes' ] is not None: - for indexer in params[ 'indexes' ]: - incoming = dict(indexer=indexer, dbkey=params[ 'dbkey' ], intname=params[ 'intname' ], path=transfer.path, user=params['user'] ) - deferred = self.tool.execute( self, set_output_hid=False, history=None, incoming=incoming, transfer=transfer, deferred=job ) - job.params[ 'indexjobs' ].append( deferred[0].id ) - else: - job.state = self.app.model.DeferredJob.states.OK - self.sa_session.add( job ) - self.sa_session.flush() - return self.app.model.DeferredJob.states.OK - - def _check_compress( self, filepath ): - retval = '' - if tarfile.is_tarfile( filepath ): - retval = 'tar.' - if check_zip( filepath ): - return 'zip' - is_bzipped, is_valid = check_bz2( filepath ) - if is_bzipped and is_valid: - return retval + 'bzip' - is_gzipped, is_valid = check_gzip( filepath ) - if is_gzipped and is_valid: - return retval + 'gzip' - return None - - def _add_line( self, locfile, newline ): - filepath = self.locations[ locfile ] - origlines = [] - output = [] - comments = [] - with open( filepath, 'r' ) as destfile: - for line in destfile: - if line.startswith( '#' ): - comments.append( line.strip() ) - else: - origlines.append( line.strip() ) - if newline not in origlines: - origlines.append( newline ) - output.extend( comments ) - origlines.sort() - output.extend( origlines ) - with open( filepath, 'w+' ) as destfile: - destfile.write( '\n'.join( output ) ) - diff --git a/lib/galaxy/jobs/deferred/liftover_transfer.py b/lib/galaxy/jobs/deferred/liftover_transfer.py deleted file mode 100644 index 7765c2268e6..00000000000 --- a/lib/galaxy/jobs/deferred/liftover_transfer.py +++ /dev/null @@ -1,158 +0,0 @@ -""" -Module for managing genome transfer jobs. -""" -from __future__ import with_statement - -import logging, shutil, gzip, tempfile, sys - -from galaxy import eggs -from sqlalchemy import and_ - -from galaxy.util.odict import odict -from galaxy.workflow.modules import module_factory -from galaxy.jobs.actions.post import ActionBox - -from galaxy.tools.parameters import visit_input_values -from galaxy.tools.parameters.basic import DataToolParameter - -from galaxy.datatypes.checkers import * - -from data_transfer import * - -log = logging.getLogger( __name__ ) - -__all__ = [ 'LiftOverTransferPlugin' ] - -class LiftOverTransferPlugin( DataTransfer ): - - locations = {} - - def __init__( self, app ): - super( LiftOverTransferPlugin, self ).__init__( app ) - self.app = app - self.sa_session = app.model.context.current - - def create_job( self, trans, url, dbkey, from_genome, to_genome, destfile, parentjob ): - job = trans.app.transfer_manager.new( protocol='http', url=url ) - params = dict( user=trans.user.id, transfer_job_id=job.id, protocol='http', - type='init_transfer', dbkey=dbkey, from_genome=from_genome, - to_genome=to_genome, destfile=destfile, parentjob=parentjob ) - deferred = trans.app.model.DeferredJob( state = self.app.model.DeferredJob.states.NEW, plugin = 'LiftOverTransferPlugin', params = params ) - self.sa_session.add( deferred ) - self.sa_session.flush() - return deferred.id - - def check_job( self, job ): - if job.params['type'] == 'init_transfer': - if not hasattr(job, 'transfer_job'): - job.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( job.params[ 'transfer_job_id' ] ) ) - else: - self.sa_session.refresh( job.transfer_job ) - if job.transfer_job.state == 'done': - transfer = job.transfer_job - transfer.state = 'downloaded' - job.params['type'] = 'extract_transfer' - self.sa_session.add( job ) - self.sa_session.add( transfer ) - self.sa_session.flush() - return self.job_states.READY - elif job.transfer_job.state == 'running': - return self.job_states.WAIT - elif job.transfer_job.state == 'new': - assert job.params[ 'protocol' ] in [ 'http', 'ftp', 'https' ], 'Unknown protocol %s' % job.params[ 'protocol' ] - ready = True - parent = self.sa_session.query( self.app.model.DeferredJob ).get( int( job.params[ 'parentjob' ] ) ) - if not hasattr( parent, 'transfer_job' ): - parent.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( parent.params[ 'transfer_job_id' ] ) ) - if parent.transfer_job.state not in [ 'ok', 'error', 'done' ]: - ready = False - for lo_job in parent.params[ 'liftover' ]: - liftoverjob = self.sa_session.query( self.app.model.TransferJob ).get( int( lo_job ) ) - if liftoverjob: - if liftoverjob.state not in [ 'ok', 'error', 'new', 'done' ]: - ready = False - if ready: - self.app.transfer_manager.run( job.transfer_job ) - self.sa_session.add( job.transfer_job ) - self.sa_session.flush() - return self.job_states.WAIT - else: - log.error( "An error occurred while downloading from %s" % job.transfer_job.params[ 'url' ] ) - return self.job_states.INVALID - elif job.params[ 'type' ] == 'extract_transfer': - return self.job_states.READY - - def get_job_status( self, jobid ): - job = self.sa_session.query( self.app.model.DeferredJob ).get( int( jobid ) ) - return job - - def run_job( self, job ): - params = job.params - dbkey = params[ 'dbkey' ] - source = params[ 'from_genome' ] - target = params[ 'to_genome' ] - if not hasattr( job, 'transfer_job' ): - job.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( job.params[ 'transfer_job_id' ] ) ) - else: - self.sa_session.refresh( job.transfer_job ) - transfer = job.transfer_job - if params[ 'type' ] == 'extract_transfer': - CHUNK_SIZE = 2**20 - destpath = os.path.join( self.app.config.get( 'genome_data_path', 'tool-data/genome' ), source, 'liftOver' ) - if not os.path.exists( destpath ): - os.makedirs( destpath ) - destfile = job.params[ 'destfile' ] - destfilepath = os.path.join( destpath, destfile ) - tmpprefix = '%s_%s_download_unzip_' % ( job.params['dbkey'], job.params[ 'transfer_job_id' ] ) - tmppath = os.path.dirname( os.path.abspath( transfer.path ) ) - if not os.path.exists( destpath ): - os.makedirs( destpath ) - fd, uncompressed = tempfile.mkstemp( prefix=tmpprefix, dir=tmppath, text=False ) - chain = gzip.open( transfer.path, 'rb' ) - while 1: - try: - chunk = chain.read( CHUNK_SIZE ) - except IOError: - os.close( fd ) - log.error( 'Problem decompressing compressed data' ) - exit() - if not chunk: - break - os.write( fd, chunk ) - os.close( fd ) - chain.close() - # Replace the gzipped file with the decompressed file if it's safe to do so - shutil.move( uncompressed, destfilepath ) - os.remove( transfer.path ) - os.chmod( destfilepath, 0644 ) - locline = '\t'.join( [ source, target, os.path.abspath( destfilepath ) ] ) - self._add_line( locline ) - job.state = self.app.model.DeferredJob.states.OK - job.params[ 'type' ] = 'finish_transfer' - transfer.path = os.path.abspath(destfilepath) - transfer.state = 'done' - parentjob = self.sa_session.query( self.app.model.DeferredJob ).get( int( job.params[ 'parentjob' ] ) ) - finished = True - for i in parentjob.params[ 'liftover' ]: - sibling = self.sa_session.query( self.app.model.DeferredJob ).get( int( i ) ) - if sibling.state not in [ 'done', 'ok', 'error' ]: - finished = False - if finished: - parentjob.state = self.app.model.DeferredJob.states.OK - self.sa_session.add( parentjob ) - self.sa_session.add( job ) - self.sa_session.add( transfer ) - self.sa_session.flush() - return self.app.model.DeferredJob.states.OK - - def _add_line( self, newline ): - filepath = 'tool-data/liftOver.loc' - origlines = [] - with open( filepath, 'r' ) as destfile: - for line in destfile: - origlines.append( line.strip() ) - if newline not in origlines: - origlines.append( newline ) - with open( filepath, 'w+' ) as destfile: - destfile.write( '\n'.join( origlines ) ) - diff --git a/lib/galaxy/jobs/mapper.py b/lib/galaxy/jobs/mapper.py index c003c71c214..c7bc3aec1ed 100644 --- a/lib/galaxy/jobs/mapper.py +++ b/lib/galaxy/jobs/mapper.py @@ -83,7 +83,7 @@ class JobRunnerMapper( object ): if "job" in function_arg_names or "user" in function_arg_names or "user_email" in function_arg_names or "resource_params" in function_arg_names: job = self.job_wrapper.get_job() history = job.history - user = history and history.user + user = job.user user_email = user and str(user.email) if "job" in function_arg_names: diff --git a/lib/galaxy/jobs/metrics/formatting.py b/lib/galaxy/jobs/metrics/formatting.py index b3679c3650b..4057b2226e2 100644 --- a/lib/galaxy/jobs/metrics/formatting.py +++ b/lib/galaxy/jobs/metrics/formatting.py @@ -15,4 +15,4 @@ def seconds_to_str( value ): elif value < 3600: return "%s minutes" % ( value / 60 ) else: - return "%s days and %s minutes" % ( value / 3600, ( value % 3600 ) / 60 ) + return "%s hours and %s minutes" % ( value / 3600, ( value % 3600 ) / 60 ) diff --git a/lib/galaxy/managers/__init__.py b/lib/galaxy/managers/__init__.py index 8e1238af995..d5a7ab9252e 100644 --- a/lib/galaxy/managers/__init__.py +++ b/lib/galaxy/managers/__init__.py @@ -1,4 +1,33 @@ -""" 'Business logic' independent of web transactions/user context (trans) -should be pushed into models - but logic that requires the context trans -should be placed under this module. +""" +Classes that manage resources (models, tools, etc.) by using the current +Transaction. + +Encapsulates the intersection of trans (or trans.sa_session), models, +and Controllers. + +Responsibilities: + model operations that involve the trans/sa_session (CRUD) + security: + ownership, accessibility + common aspect-oriented operations via new mixins: + sharable, annotatable, tagable, ratable + +Not responsible for: + encoding/decoding ids + any http gobblygook + formatting of returned data (always python structures) + formatting of raised errors + +The goal is to have Controllers only handle: + query-string/payload parsing and encoding/decoding ids + http + return formatting + +and: + control, improve namespacing in Controllers + DRY for Controller ops (define here - use in both UI/API Controllers) + +In other words, 'Business logic' independent of web transactions/user context +(trans) should be pushed into models - but logic that requires the context +trans should be placed under this module. """ diff --git a/lib/galaxy/managers/base.py b/lib/galaxy/managers/base.py new file mode 100644 index 00000000000..967c568fed1 --- /dev/null +++ b/lib/galaxy/managers/base.py @@ -0,0 +1,7 @@ + + +class ModelManager( object ): + pass + +class ModelSerializer( object ): + pass diff --git a/lib/galaxy/managers/hdas.py b/lib/galaxy/managers/hdas.py index 2ad815fc2d5..849af2539fb 100644 --- a/lib/galaxy/managers/hdas.py +++ b/lib/galaxy/managers/hdas.py @@ -1,16 +1,35 @@ +""" +Manager and Serializer for HDAs. + +HistoryDatasetAssociations (HDAs) are datasets contained or created in a +history. +""" + from galaxy import exceptions -from ..managers import histories +from galaxy.managers import base as manager_base +from galaxy.managers import histories as history_manager -class HDAManager( object ): +import galaxy.web +import galaxy.datatypes.metadata +from galaxy import objectstore + +class HDAManager( manager_base.ModelManager ): + """ + Interface/service object for interacting with HDAs. + """ def __init__( self ): - self.histories_mgr = histories.HistoryManager() + """ + Set up and initialize other managers needed by hdas. + """ + self.histories_mgr = history_manager.HistoryManager() def get( self, trans, unencoded_id, check_ownership=True, check_accessible=True ): """ + Get an HDA by its unencoded db id, checking ownership (via its history) + or accessibility (via dataset shares/permissions). """ - # this is a replacement for UsesHistoryDatasetAssociationMixin because mixins are a bad soln/structure hda = trans.sa_session.query( trans.app.model.HistoryDatasetAssociation ).get( unencoded_id ) if hda is None: raise exceptions.ObjectNotFound() @@ -19,7 +38,8 @@ class HDAManager( object ): def secure( self, trans, hda, check_ownership=True, check_accessible=True ): """ - checks if (a) user owns item or (b) item is accessible to user. + check ownership (via its history) or accessibility (via dataset + shares/permissions). """ # all items are accessible to an admin if trans.user and trans.user_is_admin(): @@ -31,12 +51,18 @@ class HDAManager( object ): return hda def can_access_dataset( self, trans, hda ): + """ + Use security agent to see if current user has access to dataset. + """ current_user_roles = trans.get_current_user_roles() return trans.app.security_agent.can_access_dataset( current_user_roles, hda.dataset ) #TODO: is_owner, is_accessible def check_ownership( self, trans, hda ): + """ + Use history to see if current user owns HDA. + """ if not trans.user: #if hda.history == trans.history: # return hda @@ -51,6 +77,9 @@ class HDAManager( object ): "HistoryDatasetAssociation is not owned by the current user", type='error' ) def check_accessible( self, trans, hda ): + """ + Raise error if HDA is not accessible. + """ if trans.user and trans.user_is_admin(): return hda # check for access of the containing history... @@ -62,6 +91,151 @@ class HDAManager( object ): "HistoryDatasetAssociation is not accessible to the current user", type='error' ) def err_if_uploading( self, trans, hda ): + """ + Raise error if HDA is still uploading. + """ if hda.state == trans.model.Dataset.states.UPLOAD: raise exceptions.Conflict( "Please wait until this dataset finishes uploading" ) return hda + + def get_hda_dict( self, trans, hda ): + """ + Return full details of this HDA in dictionary form. + """ + #precondition: the user's access to this hda has already been checked + #TODO:?? postcondition: all ids are encoded (is this really what we want at this level?) + expose_dataset_path = trans.user_is_admin() or trans.app.config.expose_dataset_path + hda_dict = hda.to_dict( view='element', expose_dataset_path=expose_dataset_path ) + hda_dict[ 'api_type' ] = "file" + + # Add additional attributes that depend on trans must be added here rather than at the model level. + can_access_hda = trans.app.security_agent.can_access_dataset( trans.get_current_user_roles(), hda.dataset ) + can_access_hda = ( trans.user_is_admin() or can_access_hda ) + if not can_access_hda: + return self.get_inaccessible_hda_dict( trans, hda ) + hda_dict[ 'accessible' ] = True + + #TODO: I'm unclear as to which access pattern is right + hda_dict[ 'annotation' ] = hda.get_item_annotation_str( trans.sa_session, hda.history.user, hda ) + #annotation = getattr( hda, 'annotation', hda.get_item_annotation_str( trans.sa_session, trans.user, hda ) ) + + # ---- return here if deleted AND purged OR can't access + purged = ( hda.purged or hda.dataset.purged ) + if ( hda.deleted and purged ): + #TODO: to_dict should really go AFTER this - only summary data + return trans.security.encode_dict_ids( hda_dict ) + + if expose_dataset_path: + try: + hda_dict[ 'file_name' ] = hda.file_name + except objectstore.ObjectNotFound: + log.exception( 'objectstore.ObjectNotFound, HDA %s.', hda.id ) + + hda_dict[ 'download_url' ] = galaxy.web.url_for( 'history_contents_display', + history_id = trans.security.encode_id( hda.history.id ), + history_content_id = trans.security.encode_id( hda.id ) ) + + # indeces, assoc. metadata files, etc. + meta_files = [] + for meta_type in hda.metadata.spec.keys(): + if isinstance( hda.metadata.spec[ meta_type ].param, galaxy.datatypes.metadata.FileParameter ): + meta_files.append( dict( file_type=meta_type ) ) + if meta_files: + hda_dict[ 'meta_files' ] = meta_files + + # currently, the viz reg is optional - handle on/off + if trans.app.visualizations_registry: + hda_dict[ 'visualizations' ] = trans.app.visualizations_registry.get_visualizations( trans, hda ) + else: + hda_dict[ 'visualizations' ] = hda.get_visualizations() + #TODO: it may also be wiser to remove from here and add as API call that loads the visualizations + # when the visualizations button is clicked (instead of preloading/pre-checking) + + # ---- return here if deleted + if hda.deleted and not purged: + return trans.security.encode_dict_ids( hda_dict ) + + return trans.security.encode_dict_ids( hda_dict ) + + def get_inaccessible_hda_dict( self, trans, hda ): + """ + Return truncated serialization of HDA when inaccessible to user. + """ + return trans.security.encode_dict_ids({ + 'id' : hda.id, + 'history_id': hda.history.id, + 'hid' : hda.hid, + 'name' : hda.name, + 'state' : hda.state, + 'deleted' : hda.deleted, + 'visible' : hda.visible, + 'accessible': False + }) + + def get_hda_dict_with_error( self, trans, hda=None, history_id=None, id=None, error_msg='Error' ): + """ + Return truncated serialization of HDA when error raised getting + details. + """ + return trans.security.encode_dict_ids({ + 'id' : hda.id if hda else id, + 'history_id': hda.history.id if hda else history_id, + 'hid' : hda.hid if hda else '(unknown)', + 'name' : hda.name if hda else '(unknown)', + 'error' : error_msg, + 'state' : trans.model.Dataset.states.NEW + }) + + def get_display_apps( self, trans, hda ): + """ + Return dictionary containing new-style display app urls. + """ + display_apps = [] + for display_app in hda.get_display_applications( trans ).itervalues(): + + app_links = [] + for link_app in display_app.links.itervalues(): + app_links.append({ + 'target': link_app.url.get( 'target_frame', '_blank' ), + 'href' : link_app.get_display_url( hda, trans ), + 'text' : gettext( link_app.name ) + }) + if app_links: + display_apps.append( dict( label=display_app.name, links=app_links ) ) + + return display_apps + + def get_old_display_applications( self, trans, hda ): + """ + Return dictionary containing old-style display app urls. + """ + display_apps = [] + if not trans.app.config.enable_old_display_applications: + return display_apps + + for display_app in hda.datatype.get_display_types(): + target_frame, display_links = hda.datatype.get_display_links( hda, + display_app, trans.app, trans.request.base ) + + if len( display_links ) > 0: + display_label = hda.datatype.get_display_label( display_app ) + + app_links = [] + for display_name, display_link in display_links: + app_links.append({ + 'target': target_frame, + 'href' : display_link, + 'text' : gettext( display_name ) + }) + if app_links: + display_apps.append( dict( label=display_label, links=app_links ) ) + + return display_apps + + +# ============================================================================= +class HistorySerializer( manager_base.ModelSerializer ): + """ + Interface/service object for serializing HDAs into dictionaries. + """ + pass diff --git a/lib/galaxy/managers/histories.py b/lib/galaxy/managers/histories.py index 1e710738f15..3a198ac3b94 100644 --- a/lib/galaxy/managers/histories.py +++ b/lib/galaxy/managers/histories.py @@ -1,9 +1,32 @@ +""" +Manager and Serializer for histories. + +Histories are containers for datasets or dataset collections +created (or copied) by users over the course of an analysis. +""" + from galaxy import exceptions from galaxy.model import orm +from galaxy.managers import base as manager_base +import galaxy.managers.hdas + +import galaxy.web +import galaxy.dataset_collections.util + +import logging +log = logging.getLogger( __name__ ) + + +# ============================================================================= +class HistoryManager( manager_base.ModelManager ): + """ + Interface/service object for interacting with HDAs. + """ -class HistoryManager( object ): #TODO: all the following would be more useful if passed the user instead of defaulting to trans.user + def __init__( self, *args, **kwargs ): + super( HistoryManager, self ).__init__( *args, **kwargs ) def get( self, trans, unencoded_id, check_ownership=True, check_accessible=True, deleted=None ): """ @@ -44,7 +67,7 @@ class HistoryManager( object ): def secure( self, trans, history, check_ownership=True, check_accessible=True ): """ - checks if (a) user owns item or (b) item is accessible to user. + Checks if (a) user owns item or (b) item is accessible to user. """ # all items are accessible to an admin if trans.user and trans.user_is_admin(): @@ -56,15 +79,28 @@ class HistoryManager( object ): return history def is_current( self, trans, history ): + """ + True if the given history is the user's current history. + + Returns False if the session has no current history. + """ + if trans.history is None: + return False return trans.history == history def is_owner( self, trans, history ): + """ + True if the current user is the owner of the given history. + """ # anon users are only allowed to view their current history if not trans.user: return self.is_current( trans, history ) return trans.user == history.user def check_ownership( self, trans, history ): + """ + Raises error if the current user is not the owner of the history. + """ if trans.user and trans.user_is_admin(): return history if not trans.user and not self.is_current( trans, history ): @@ -74,6 +110,9 @@ class HistoryManager( object ): raise exceptions.ItemOwnershipException( "History is not owned by the current user", type='error' ) def is_accessible( self, trans, history ): + """ + True if the user can access (read) the current history. + """ # admin always have access if trans.user and trans.user_is_admin(): return True @@ -88,6 +127,103 @@ class HistoryManager( object ): return False def check_accessible( self, trans, history ): + """ + Raises error if the current user can't access the history. + """ if self.is_accessible( trans, history ): return history raise exceptions.ItemAccessibilityException( "History is not accessible to the current user", type='error' ) + + #TODO: bleh... + def _get_history_data( self, trans, history ): + """ + Returns a dictionary containing ``history`` and ``contents``, serialized + history and an array of serialized history contents respectively. + """ + hda_mgr = galaxy.managers.hdas.HDAManager() + collection_dictifier = galaxy.dataset_collections.util.dictify_dataset_collection_instance + + history_dictionary = {} + contents_dictionaries = [] + try: + #for content in history.contents_iter( **contents_kwds ): + for content in history.contents_iter( types=[ 'dataset', 'dataset_collection' ] ): + hda_dict = {} + + if isinstance( content, trans.app.model.HistoryDatasetAssociation ): + try: + hda_dict = hda_mgr.get_hda_dict( trans, content ) + except Exception, exc: + # don't fail entire list if hda err's, record and move on + log.exception( 'Error bootstrapping hda: %s', exc ) + hda_dict = hda_mgr.get_hda_dict_with_error( trans, content, str( exc ) ) + + elif isinstance( content, trans.app.model.HistoryDatasetCollectionAssociation ): + try: + service = trans.app.dataset_collections_service + dataset_collection_instance = service.get_dataset_collection_instance( + trans=trans, + instance_type='history', + id=trans.security.encode_id( content.id ), + ) + hda_dict = collection_dictifier( dataset_collection_instance, + security=trans.security, parent=dataset_collection_instance.history, view="element" ) + + except Exception, exc: + log.exception( "Error in history API at listing dataset collection: %s", exc ) + #TODO: return some dict with the error + + contents_dictionaries.append( hda_dict ) + + # re-use the hdas above to get the history data... + history_dictionary = self.get_history_dict( trans, history, contents_dictionaries=contents_dictionaries ) + + except Exception, exc: + user_id = str( trans.user.id ) if trans.user else '(anonymous)' + log.exception( 'Error bootstrapping history for user %s: %s', user_id, str( exc ) ) + message = ( 'An error occurred getting the history data from the server. ' + + 'Please contact a Galaxy administrator if the problem persists.' ) + history_dictionary[ 'error' ] = message + + return { + 'history' : history_dictionary, + 'contents' : contents_dictionaries + } + + def get_history_dict( self, trans, history, contents_dictionaries=None ): + """ + Returns history data in the form of a dictionary. + """ + #TODO: to serializer + history_dict = history.to_dict( view='element', value_mapper={ 'id':trans.security.encode_id }) + history_dict[ 'user_id' ] = None + if history.user_id: + history_dict[ 'user_id' ] = trans.security.encode_id( history.user_id ) + + history_dict[ 'nice_size' ] = history.get_disk_size( nice_size=True ) + history_dict[ 'annotation' ] = history.get_item_annotation_str( trans.sa_session, history.user, history ) + if not history_dict[ 'annotation' ]: + history_dict[ 'annotation' ] = '' + + #TODO: item_slug url + if history_dict[ 'importable' ] and history_dict[ 'slug' ]: + username_and_slug = ( '/' ).join(( 'u', history.user.username, 'h', history_dict[ 'slug' ] )) + history_dict[ 'username_and_slug' ] = username_and_slug + +#TODO: re-add + #hda_summaries = hda_dictionaries if hda_dictionaries else self.get_hda_summary_dicts( trans, history ) + ##TODO remove the following in v2 + #( state_counts, state_ids ) = self._get_hda_state_summaries( trans, hda_summaries ) + #history_dict[ 'state_details' ] = state_counts + #history_dict[ 'state_ids' ] = state_ids + #history_dict[ 'state' ] = self._get_history_state_from_hdas( trans, history, state_counts ) + + return history_dict + + +# ============================================================================= +class HistorySerializer( manager_base.ModelSerializer ): + """ + Interface/service object for serializing histories into dictionaries. + """ + pass diff --git a/lib/galaxy/model/tool_shed_install/__init__.py b/lib/galaxy/model/tool_shed_install/__init__.py index a37b001d014..475c8bb503a 100644 --- a/lib/galaxy/model/tool_shed_install/__init__.py +++ b/lib/galaxy/model/tool_shed_install/__init__.py @@ -68,7 +68,9 @@ class ToolShedRepository( object ): @property def can_deactivate( self ): - return self.status not in [ self.installation_status.DEACTIVATED, self.installation_status.UNINSTALLED ] + return self.status not in [ self.installation_status.DEACTIVATED, + self.installation_status.ERROR, + self.installation_status.UNINSTALLED ] @property def can_reinstall_or_activate( self ): diff --git a/lib/galaxy/tools/__init__.py b/lib/galaxy/tools/__init__.py index 131294e6a63..2857e14a06e 100755 --- a/lib/galaxy/tools/__init__.py +++ b/lib/galaxy/tools/__init__.py @@ -11,6 +11,7 @@ import pipes import re import shutil import sys +import string import tempfile import threading import traceback @@ -214,8 +215,7 @@ class ToolBox( object, Dictifiable ): config_elems = [] else: parsing_shed_tool_conf = False - # Default to backward compatible config setting. - tool_path = self.tool_root_dir + tool_path = self.__resolve_tool_path(tool_path, config_filename) # Only load the panel_dict under certain conditions. load_panel_dict = not self.integrated_tool_panel_config_has_contents for _, elem in enumerate( root ): @@ -243,6 +243,17 @@ class ToolBox( object, Dictifiable ): return shed_config_dict return default + def __resolve_tool_path(self, tool_path, config_filename): + if not tool_path: + # Default to backward compatible config setting. + tool_path = self.tool_root_dir + else: + # Allow use of __tool_conf_dir__ in toolbox config files. + tool_conf_dir = os.path.dirname(config_filename) + tool_path_vars = {"tool_conf_dir": tool_conf_dir} + tool_path = string.Template(tool_path).safe_substitute(tool_path_vars) + return tool_path + def __add_tool_to_tool_panel( self, tool, panel_component, section=False ): # See if a version of this tool is already loaded into the tool panel. The value of panel_component # will be a ToolSection (if the value of section=True) or self.tool_panel (if section=False). @@ -2496,13 +2507,16 @@ class Tool( object, Dictifiable ): incoming_value = get_incoming_value( incoming, key, None ) value, error = check_param( trans, input, incoming_value, context, source=source ) # If a callback was provided, allow it to process the value + input_name = input.name if item_callback: - old_value = state.get( input.name, None ) + old_value = state.get( input_name, None ) value, error = item_callback( trans, key, input, value, error, old_value, context ) if error: - errors[ input.name ] = error - state[ input.name ] = value - state.update( self.__meta_properties_for_state( key, incoming, incoming_value, value ) ) + errors[ input_name ] = error + + state[ input_name ] = value + meta_properties = self.__meta_properties_for_state( key, incoming, incoming_value, value, input_name ) + state.update( meta_properties ) return errors def __remove_meta_properties( self, incoming ): @@ -2516,12 +2530,17 @@ class Tool( object, Dictifiable ): del result[ key ] return result - def __meta_properties_for_state( self, key, incoming, incoming_val, state_val ): + def __meta_properties_for_state( self, key, incoming, incoming_val, state_val, input_name ): meta_properties = {} - multirun_key = "%s|__multirun__" % key - if multirun_key in incoming: - multi_value = incoming[ multirun_key ] - meta_properties[ multirun_key ] = multi_value + meta_property_suffixes = [ + "__multirun__", + "__collection_multirun__", + ] + for meta_property_suffix in meta_property_suffixes: + multirun_key = "%s|%s" % ( key, meta_property_suffix ) + if multirun_key in incoming: + multi_value = incoming[ multirun_key ] + meta_properties[ "%s|%s" % ( input_name, meta_property_suffix ) ] = multi_value return meta_properties @property @@ -2915,12 +2934,12 @@ class Tool( object, Dictifiable ): self.sa_session.flush() return children - def collect_primary_datasets( self, output, job_working_directory ): + def collect_primary_datasets( self, output, job_working_directory, input_ext ): """ Find any additional datasets generated by a tool and attach (for cases where number of outputs is not known in advance). """ - return output_collect.collect_primary_datatasets( self, output, job_working_directory ) + return output_collect.collect_primary_datasets( self, output, job_working_directory, input_ext ) def to_dict( self, trans, link_details=False, io_details=False ): """ Returns dict of tool. """ @@ -3194,7 +3213,9 @@ class DataManagerTool( OutputParameterJSONTool ): # Populate tool_type to ToolClass mappings tool_types = {} -for tool_class in [ Tool, DataDestinationTool, SetMetadataTool, DataSourceTool, AsyncDataSourceTool, DataManagerTool ]: +for tool_class in [ Tool, SetMetadataTool, OutputParameterJSONTool, + DataManagerTool, DataSourceTool, AsyncDataSourceTool, + DataDestinationTool ]: tool_types[ tool_class.tool_type ] = tool_class diff --git a/lib/galaxy/tools/actions/index_genome.py b/lib/galaxy/tools/actions/index_genome.py deleted file mode 100644 index 7d33b335d15..00000000000 --- a/lib/galaxy/tools/actions/index_genome.py +++ /dev/null @@ -1,67 +0,0 @@ -import tempfile -from __init__ import ToolAction -from galaxy.util.odict import odict -from galaxy.tools.genome_index import * - -import logging -log = logging.getLogger( __name__ ) - -class GenomeIndexToolAction( ToolAction ): - """Tool action used for exporting a history to an archive. """ - - def execute( self, tool, trans, *args, **kwargs ): - # - # Get genome to index. - # - incoming = kwargs['incoming'] - # - # Create the job and output dataset objects - # - job = trans.app.model.Job() - job.tool_id = tool.id - job.user_id = incoming['user'] - start_job_state = job.state # should be job.states.NEW - job.state = job.states.WAITING # we need to set job state to something other than NEW, - # or else when tracking jobs in db it will be picked up - # before we have added input / output parameters - trans.sa_session.add( job ) - - # Create dataset that will serve as archive. - temp_dataset = trans.app.model.Dataset( state=trans.app.model.Dataset.states.NEW ) - trans.sa_session.add( temp_dataset ) - - trans.sa_session.flush() # ensure job.id and archive_dataset.id are available - trans.app.object_store.create( temp_dataset ) # set the object store id, create dataset (because galaxy likes having datasets) - - # - # Setup job and job wrapper. - # - - # Add association for keeping track of index jobs, transfer jobs, and so on. - user = trans.sa_session.query( trans.app.model.User ).get( int( incoming['user'] ) ) - assoc = trans.app.model.GenomeIndexToolData( job=job, dataset=temp_dataset, fasta_path=incoming['path'], \ - indexer=incoming['indexer'], user=user, \ - deferred_job=kwargs['deferred'], transfer_job=kwargs['transfer'] ) - trans.sa_session.add( assoc ) - - job_wrapper = GenomeIndexToolWrapper( job ) - cmd_line = job_wrapper.setup_job( assoc ) - - # - # Add parameters to job_parameter table. - # - incoming[ '__GENOME_INDEX_COMMAND__' ] = cmd_line - for name, value in tool.params_to_strings( incoming, trans.app ).iteritems(): - job.add_parameter( name, value ) - - job.state = start_job_state # job inputs have been configured, restore initial job state - job.set_handler(tool.get_job_handler(None)) - trans.sa_session.flush() - - - # Queue the job for execution - trans.app.job_queue.put( job.id, tool.id ) - log.info( "Added genome index job to the job queue, id: %s" % str( job.id ) ) - - return job, odict() - diff --git a/lib/galaxy/tools/deps/containers.py b/lib/galaxy/tools/deps/containers.py index 0707c0ddea3..3124ec68924 100644 --- a/lib/galaxy/tools/deps/containers.py +++ b/lib/galaxy/tools/deps/containers.py @@ -190,20 +190,32 @@ class DockerContainer(Container): volumes_raw = self.__expand_str(self.destination_info.get("docker_volumes", "$defaults")) # TODO: Remove redundant volumes... volumes = docker_util.DockerVolume.volumes_from_str(volumes_raw) - return docker_util.build_docker_run_command( - command, - self.container_id, - volumes=volumes, - env_directives=env_directives, - working_directory=working_directory, + volumes_from = self.destination_info.get("docker_volumes_from", docker_util.DEFAULT_VOLUMES_FROM) + + docker_host_props = dict( docker_cmd=prop("cmd", docker_util.DEFAULT_DOCKER_COMMAND), sudo=asbool(prop("sudo", docker_util.DEFAULT_SUDO)), sudo_cmd=prop("sudo_cmd", docker_util.DEFAULT_SUDO_COMMAND), host=prop("host", docker_util.DEFAULT_HOST), - net=prop("net", "none") # By default, docker instance has networking disabled ) + cache_command = docker_util.build_docker_cache_command(self.container_id, **docker_host_props) + run_command = docker_util.build_docker_run_command( + command, + self.container_id, + volumes=volumes, + volumes_from=volumes_from, + env_directives=env_directives, + working_directory=working_directory, + net=prop("net", "none"), # By default, docker instance has networking disabled + **docker_host_props + ) + return "%s\n%s" % (cache_command, run_command) + def __expand_str(self, value): + if not value: + return value + template = string.Template(value) variables = dict() diff --git a/lib/galaxy/tools/deps/docker_util.py b/lib/galaxy/tools/deps/docker_util.py index 8117ab13322..a5d9262d640 100644 --- a/lib/galaxy/tools/deps/docker_util.py +++ b/lib/galaxy/tools/deps/docker_util.py @@ -7,6 +7,7 @@ DEFAULT_VOLUME_MOUNT_TYPE = "rw" DEFAULT_WORKING_DIRECTORY = None DEFAULT_NET = None DEFAULT_MEMORY = None +DEFAULT_VOLUMES_FROM = None class DockerVolume(object): @@ -49,32 +50,48 @@ class DockerVolume(object): return ":".join([self.from_path, self.to_path, self.how]) +def build_docker_cache_command( + image, + docker_cmd=DEFAULT_DOCKER_COMMAND, + sudo=DEFAULT_SUDO, + sudo_cmd=DEFAULT_SUDO_COMMAND, + host=DEFAULT_HOST, +): + inspect_command_parts = __docker_prefix(docker_cmd, sudo, sudo_cmd, host) + inspect_command_parts.extend(["inspect", image]) + inspect_image_command = " ".join(inspect_command_parts) + + pull_command_parts = __docker_prefix(docker_cmd, sudo, sudo_cmd, host) + pull_command_parts.extend(["pull", image]) + pull_image_command = " ".join(pull_command_parts) + cache_command = "%s > /dev/null 2>&1\n[ $? -ne 0 ] && %s > /dev/null 2>&1\n" % (inspect_image_command, pull_image_command) + return cache_command + + def build_docker_run_command( container_command, image, tag=None, - docker_cmd=DEFAULT_DOCKER_COMMAND, volumes=[], + volumes_from=DEFAULT_VOLUMES_FROM, memory=DEFAULT_MEMORY, env_directives=[], working_directory=DEFAULT_WORKING_DIRECTORY, + name=None, + net=DEFAULT_NET, + docker_cmd=DEFAULT_DOCKER_COMMAND, sudo=DEFAULT_SUDO, sudo_cmd=DEFAULT_SUDO_COMMAND, - name=None, host=DEFAULT_HOST, - net=DEFAULT_NET, ): - command_parts = [] - if sudo: - command_parts.append(sudo_cmd) - command_parts.append(docker_cmd) - if host: - command_parts.append(["-H", host]) + command_parts = __docker_prefix(docker_cmd, sudo, sudo_cmd, host) command_parts.append("run") for env_directive in env_directives: command_parts.extend(["-e", env_directive]) for volume in volumes: command_parts.extend(["-v", str(volume)]) + if volumes_from: + command_parts.extend(["--volumes-from", str(volumes_from)]) if memory: command_parts.extend(["-m", memory]) if name: @@ -89,3 +106,15 @@ def build_docker_run_command( command_parts.append(full_image) command_parts.append(container_command) return " ".join(command_parts) + + +def __docker_prefix(docker_cmd, sudo, sudo_cmd, host): + """ Prefix to issue a docker command. + """ + command_parts = [] + if sudo: + command_parts.append(sudo_cmd) + command_parts.append(docker_cmd) + if host: + command_parts.append(["-H", host]) + return command_parts diff --git a/lib/galaxy/tools/genome_index/__init__.py b/lib/galaxy/tools/genome_index/__init__.py deleted file mode 100644 index 0fb36f7be4a..00000000000 --- a/lib/galaxy/tools/genome_index/__init__.py +++ /dev/null @@ -1,243 +0,0 @@ -from __future__ import with_statement - -import json -import logging -import os -import shutil -import tarfile -import tempfile - -from galaxy import model, util -from galaxy.web.framework.helpers import to_unicode -from galaxy.model.item_attrs import UsesAnnotations -from galaxy.util.json import * -from galaxy.web.base.controller import UsesHistoryMixin -from galaxy.tools.data import ToolDataTableManager - - -log = logging.getLogger(__name__) - -def load_genome_index_tools( toolbox ): - """ Adds tools for indexing genomes via the main job runner. """ - # Create XML for loading the tool. - tool_xml_text = """ - - - - $__GENOME_INDEX_COMMAND__ $output_file $output_file.files_path "$__app__.config.rsync_url" "$__app__.config.tool_data_path" - - - - - - - - - - - """ - - # Load index tool. - tmp_name = tempfile.NamedTemporaryFile() - tmp_name.write( tool_xml_text ) - tmp_name.flush() - genome_index_tool = toolbox.load_tool( tmp_name.name ) - toolbox.tools_by_id[ genome_index_tool.id ] = genome_index_tool - log.debug( "Loaded genome index tool: %s", genome_index_tool.id ) - -class GenomeIndexToolWrapper( object ): - """ Provides support for performing jobs that index a genome. """ - def __init__( self, job_id ): - self.locations = dict() - self.job_id = job_id - - def setup_job( self, genobj ): - """ Perform setup for job to index a genome and return an archive. Method generates - attribute files, sets the corresponding attributes in the associated database - object, and returns a command line for running the job. The command line - includes the command, inputs, and options; it does not include the output - file because it must be set at runtime. """ - - # - # Create and return command line for running tool. - # - scriptpath = os.path.join( os.path.abspath( os.getcwd() ), "lib/galaxy/tools/genome_index/index_genome.py" ) - return "python %s %s %s" % ( scriptpath, genobj.indexer, genobj.fasta_path ) - - def postprocessing( self, sa_session, app ): - """ Finish the job, move the finished indexes to their final resting place, - and update the .loc files where applicable. """ - gitd = sa_session.query( model.GenomeIndexToolData ).filter_by( job_id=self.job_id ).first() - indexdirs = dict( bfast='bfast_index', bowtie='bowtie_index', bowtie2='bowtie2_index', - bwa='bwa_index', perm='perm_%s_index', picard='srma_index', sam='sam_index' ) - - - if gitd: - fp = open( gitd.dataset.get_file_name(), 'r' ) - deferred = sa_session.query( model.DeferredJob ).filter_by( id=gitd.deferred_job_id ).first() - try: - logloc = json.load( fp ) - except ValueError: - deferred.state = app.model.DeferredJob.states.ERROR - sa_session.add( deferred ) - sa_session.flush() - log.debug( 'Indexing job failed, setting deferred job state to error.' ) - return False - finally: - fp.close() - destination = None - tdtman = ToolDataTableManager( app.config.tool_data_path ) - xmltree = tdtman.load_from_config_file( app.config.tool_data_table_config_path, app.config.tool_data_path ) - for node in xmltree: - table = node.get('name') - location = node.findall('file')[0].get('path') - self.locations[table] = os.path.abspath( location ) - locbase = os.path.abspath( os.path.split( self.locations['all_fasta'] )[0] ) - params = deferred.params - dbkey = params[ 'dbkey' ] - basepath = os.path.join( os.path.abspath( app.config.genome_data_path ), dbkey ) - intname = params[ 'intname' ] - indexer = gitd.indexer - workingdir = os.path.abspath( gitd.dataset.extra_files_path ) - location = [] - indexdata = gitd.dataset.extra_files_path - if indexer == '2bit': - indexdata = os.path.join( workingdir, '%s.2bit' % dbkey ) - destination = os.path.join( basepath, 'seq', '%s.2bit' % dbkey ) - location.append( dict( line='\t'.join( [ 'seq', dbkey, destination ] ), file= os.path.join( locbase, 'alignseq.loc' ) ) ) - elif indexer == 'bowtie': - self._ex_tar( workingdir, 'cs.tar' ) - destination = os.path.join( basepath, 'bowtie_index' ) - for var in [ 'nt', 'cs' ]: - for line in logloc[ var ]: - idx = line - if var == 'nt': - locfile = self.locations[ 'bowtie_indexes' ] - locdir = os.path.join( destination, idx ) - else: - locfile = self.locations[ 'bowtie_indexes_color' ] - locdir = os.path.join( destination, var, idx ) - location.append( dict( line='\t'.join( [ dbkey, dbkey, intname, locdir ] ), file=locfile ) ) - elif indexer == 'bowtie2': - destination = os.path.join( basepath, 'bowtie2_index' ) - for line in logloc[ 'nt' ]: - idx = line - locfile = self.locations[ 'bowtie2_indexes' ] - locdir = os.path.join( destination, idx ) - location.append( dict( line='\t'.join( [ dbkey, dbkey, intname, locdir ] ), file=locfile ) ) - elif indexer == 'bwa': - self._ex_tar( workingdir, 'cs.tar' ) - destination = os.path.join( basepath, 'bwa_index' ) - for var in [ 'nt', 'cs' ]: - for line in logloc[ var ]: - idx = line - if var == 'nt': - locfile = self.locations[ 'bwa_indexes' ] - locdir = os.path.join( destination, idx ) - else: - locfile = self.locations[ 'bwa_indexes_color' ] - locdir = os.path.join( destination, var, idx ) - location.append( dict( line='\t'.join( [ dbkey, dbkey, intname, locdir ] ), file=locfile ) ) - elif indexer == 'perm': - self._ex_tar( workingdir, 'cs.tar' ) - destination = os.path.join( basepath, 'perm_index' ) - for var in [ 'nt', 'cs' ]: - for line in logloc[ var ]: - idx = line.pop() - if var == 'nt': - locfile = self.locations[ 'perm_base_indexes' ] - locdir = os.path.join( destination, idx ) - else: - locfile = self.locations[ 'perm_color_indexes' ] - locdir = os.path.join( destination, var, idx ) - line.append( locdir ) - location.append( dict( line='\t'.join( line ), file=locfile ) ) - elif indexer == 'picard': - destination = os.path.join( basepath, 'srma_index' ) - for var in [ 'nt' ]: - for line in logloc[ var ]: - idx = line - locfile = self.locations[ 'picard_indexes' ] - locdir = os.path.join( destination, idx ) - location.append( dict( line='\t'.join( [ dbkey, dbkey, intname, locdir ] ), file=locfile ) ) - elif indexer == 'sam': - destination = os.path.join( basepath, 'sam_index' ) - for var in [ 'nt' ]: - for line in logloc[ var ]: - locfile = self.locations[ 'sam_fa_indexes' ] - locdir = os.path.join( destination, line ) - location.append( dict( line='\t'.join( [ 'index', dbkey, locdir ] ), file=locfile ) ) - - if destination is not None and os.path.exists( os.path.split( destination )[0] ) and not os.path.exists( destination ): - log.debug( 'Moving %s to %s' % ( indexdata, destination ) ) - shutil.move( indexdata, destination ) - if indexer not in [ '2bit' ]: - genome = '%s.fa' % dbkey - target = os.path.join( destination, genome ) - fasta = os.path.abspath( os.path.join( basepath, 'seq', genome ) ) - self._check_link( fasta, target ) - if os.path.exists( os.path.join( destination, 'cs' ) ): - target = os.path.join( destination, 'cs', genome ) - fasta = os.path.abspath( os.path.join( basepath, 'seq', genome ) ) - self._check_link( fasta, target ) - for line in location: - self._add_line( line[ 'file' ], line[ 'line' ] ) - deferred.state = app.model.DeferredJob.states.OK - sa_session.add( deferred ) - sa_session.flush() - - - def _check_link( self, targetfile, symlink ): - target = os.path.relpath( targetfile, os.path.dirname( symlink ) ) - filename = os.path.basename( targetfile ) - if not os.path.exists( targetfile ): # this should never happen. - raise Exception, "%s not found. Unable to proceed without a FASTA file. Aborting." % targetfile - if os.path.exists( symlink ) and os.path.islink( symlink ): - if os.path.realpath( symlink ) == os.path.abspath( targetfile ): # symlink exists, points to the correct FASTA file. - return - else: # no it doesn't. Make a new one, and this time do it right. - os.remove( symlink ) - os.symlink( target, symlink ) - return - elif not os.path.exists( symlink ): # no symlink to the FASTA file. Create one. - os.symlink( target, symlink ) - return - elif os.path.exists( symlink ) and not os.path.islink( symlink ): - if self._hash_file( targetfile ) == self._hash_file( symlink ): # files are identical. No need to panic. - return - else: - if os.path.getsize( symlink ) == 0: # somehow an empty file got copied instead of the symlink. Delete with extreme prejudice. - os.remove( symlink ) - os.symlink( target, symlink ) - return - else: - raise Exception, "Regular file %s exists, is not empty, contents do not match %s." % ( symlink, targetfile ) - - def _hash_file( self, filename ): - import hashlib - md5 = hashlib.md5() - with open( filename, 'rb' ) as f: - for chunk in iter( lambda: f.read( 8192 ), '' ): - md5.update( chunk ) - return md5.digest() - - - def _ex_tar( self, directory, filename ): - fh = tarfile.open( os.path.join( directory, filename ) ) - fh.extractall( path=directory ) - fh.close() - os.remove( os.path.join( directory, filename ) ) - - def _add_line( self, locfile, newline ): - filepath = locfile - origlines = [] - output = [] - comments = [] - with open( filepath, 'r' ) as destfile: - for line in destfile: - origlines.append( line.strip() ) - if newline not in origlines: - origlines.append( newline ) - with open( filepath, 'w+' ) as destfile: - origlines.append( '' ) - destfile.write( '\n'.join( origlines ) ) diff --git a/lib/galaxy/tools/genome_index/index_genome.py b/lib/galaxy/tools/genome_index/index_genome.py deleted file mode 100644 index fa10450059c..00000000000 --- a/lib/galaxy/tools/genome_index/index_genome.py +++ /dev/null @@ -1,327 +0,0 @@ -#!/usr/bin/env python -""" -Export a history to an archive file using attribute files. - -usage: %prog history_attrs dataset_attrs job_attrs out_file - -G, --gzip: gzip archive file -""" -from __future__ import with_statement - -import json -import optparse -import os -import shlex -import shutil -import subprocess -import sys -import tarfile -import tempfile -import time - - -class ManagedIndexer(): - def __init__( self, output_file, infile, workingdir, rsync_url, tooldata ): - self.tooldatapath = os.path.abspath( tooldata ) - self.workingdir = os.path.abspath( workingdir ) - self.outfile = open( os.path.abspath( output_file ), 'w' ) - self.basedir = os.path.split( self.workingdir )[0] - self.fasta = os.path.abspath( infile ) - self.locations = dict( nt=[], cs=[] ) - self.log = [] - self.rsync_opts = '-aclSzq' - self.rsync_url = rsync_url - self.indexers = { - 'bwa': '_bwa', - 'bowtie': '_bowtie', - 'bowtie2': '_bowtie2', - '2bit': '_twobit', - 'perm': '_perm', - 'bfast': '_bfast', - 'picard': '_picard', - 'sam': '_sam' - } - if not os.path.exists( self.workingdir ): - os.makedirs( self.workingdir ) - self.logfile = open( os.path.join( self.workingdir, 'ManagedIndexer.log' ), 'w+' ) - - def run_indexer( self, indexer ): - self.fapath = self.fasta - self.fafile = os.path.basename( self.fapath ) - self.genome = os.path.splitext( self.fafile )[0] - with WithChDir( self.basedir ): - if indexer not in self.indexers: - sys.stderr.write( 'The requested indexing function does not exist' ) - exit(127) - else: - with WithChDir( self.workingdir ): - self._log( 'Running indexer %s.' % indexer ) - result = getattr( self, self.indexers[ indexer ] )() - if result in [ None, False ]: - sys.stderr.write( 'Error running indexer %s, %s' % ( indexer, result ) ) - self._flush_files() - exit(1) - else: - self._log( self.locations ) - self._log( 'Indexer %s completed successfully.' % indexer ) - self._flush_files() - exit(0) - - def _check_link( self ): - self._log( 'Checking symlink to %s' % self.fafile ) - if not os.path.exists( self.fafile ): - self._log( 'Symlink not found, creating' ) - os.symlink( os.path.relpath( self.fapath ), self.fafile ) - - def _do_rsync( self, idxpath ): - self._log( 'Trying rsync at %s/%s%s' % ( self.rsync_url, self.genome, idxpath ) ) - result = subprocess.call( shlex.split( 'rsync %s %s/%s%s .' % ( self.rsync_opts, self.rsync_url, self.genome, idxpath ) ), stderr=self.logfile ) - if result != 0: - self._log( 'Rsync failed or index not found. Generating.' ) - else: - self._log( 'Rsync succeeded.' ) - return result - - def _flush_files( self ): - json.dump( self.locations, self.outfile ) - self.outfile.close() - self.logfile.close() - - def _log( self, stuff ): - timestamp = time.strftime('%Y-%m-%d %H:%M:%S %z') - self.logfile.write( "[%s] %s\n" % (timestamp, stuff) ) - - def _bwa( self ): - result = self._do_rsync( '/bwa_index/' ) - if result == 0: - self.locations[ 'nt' ].append( self.fafile ) - return self._bwa_cs() - else: - self._check_link() - command = shlex.split( 'bwa index -a bwtsw %s' % self.fafile ) - result = subprocess.call( command, stderr=self.logfile, stdout=self.logfile ) - if result != 0: - newcommand = shlex.split( 'bwa index -c %s' % self.fafile ) - result = call( newcommand, stderr=self.logfile, stdout=self.logfile ) - if result == 0: - self.locations[ 'nt' ].append( self.fafile ) - os.remove( self.fafile ) - return self._bwa_cs() - else: - self._log( 'BWA (base) exited with code %s' % result ) - return False - - def _bwa_cs( self ): - if not os.path.exists( os.path.join( self.workingdir, 'cs' ) ): - os.makedirs( 'cs' ) - with WithChDir( 'cs' ): - self._check_link() - command = shlex.split( 'bwa index -a bwtsw -c %s' % self.fafile ) - result = subprocess.call( command, stderr=self.logfile, stdout=self.logfile ) - if result != 0: - newcommand = shlex.split( 'bwa index -c %s' % self.fafile ) - result = call( newcommand, stderr=self.logfile, stdout=self.logfile ) - if result == 0: - self.locations[ 'cs' ].append( self.fafile ) - os.remove( self.fafile ) - else: - self._log( 'BWA (color) exited with code %s' % result ) - return False - else: - self.locations[ 'cs' ].append( self.fafile ) - os.remove( self.fafile ) - else: - self.locations[ 'cs' ].append( self.fafile ) - temptar = tarfile.open( 'cs.tar', 'w' ) - temptar.add( 'cs' ) - temptar.close() - shutil.rmtree( 'cs' ) - return True - - - def _bowtie( self ): - result = self._do_rsync( '/bowtie_index/' ) - if result == 0: - self.locations[ 'nt' ].append( self.genome ) - return self._bowtie_cs() - else: - self._check_link() - command = shlex.split( 'bowtie-build -f %s %s' % ( self.fafile, self.genome ) ) - result = subprocess.call( command, stderr=self.logfile, stdout=self.logfile ) - if result == 0: - self.locations[ 'nt' ].append( self.genome ) - os.remove( self.fafile ) - return self._bowtie_cs() - else: - self._log( 'Bowtie (base) exited with code %s' % result ) - return False - - def _bowtie_cs( self ): - indexdir = os.path.join( os.getcwd(), 'cs' ) - if not ( os.path.exists( indexdir ) ): - os.makedirs( indexdir ) - with WithChDir( indexdir ): - self._check_link() - command = shlex.split( 'bowtie-build -C -f %s %s' % ( self.fafile, self.genome ) ) - result = subprocess.call( command, stderr=self.logfile, stdout=self.logfile ) - if result == 0: - self.locations[ 'cs' ].append( self.genome ) - else: - self._log( 'Bowtie (color) exited with code %s' % result ) - return False - os.remove( os.path.join( indexdir, self.fafile ) ) - else: - self.locations[ 'cs' ].append( self.genome ) - temptar = tarfile.open( 'cs.tar', 'w' ) - temptar.add( 'cs' ) - temptar.close() - shutil.rmtree( 'cs' ) - return True - - - def _bowtie2( self ): - result = self._do_rsync( '/bowtie2_index/' ) - if result == 0: - self.locations[ 'nt' ].append( self.fafile ) - return True - ref_base = os.path.splitext(self.fafile)[0] - self._check_link() - command = shlex.split( 'bowtie2-build %s %s' % ( self.fafile, ref_base ) ) - result = subprocess.call( command, stderr=self.logfile, stdout=self.logfile ) - if result == 0: - self.locations[ 'nt' ].append( ref_base ) - os.remove( self.fafile ) - return True - else: - self._log( 'Bowtie2 exited with code %s' % result ) - return False - - def _twobit( self ): - """Index reference files using 2bit for random access. - """ - result = self._do_rsync( '/seq/%s.2bit' % self.genome ) - if result == 0: - self.locations['nt'].append( "%s.2bit" % self.genome ) - return True - else: - out_file = "%s.2bit" % self.genome - self._check_link() - command = shlex.split( 'faToTwoBit %s %s' % ( self.fafile, out_file ) ) - result = subprocess.call( command, stderr=self.logfile, stdout=self.logfile ) - if result == 0: - self.locations['nt'].append( out_file ) - os.remove( self.fafile ) - return True - else: - self._log( 'faToTwoBit exited with code %s' % result ) - return False - - def _perm( self ): - result = self._do_rsync( '/perm_index/' ) - self._check_link() - genome = self.genome - read_length = 50 - for seed in [ 'F3', 'F4' ]: - key = '%s_%s_%s' % (self.genome, seed, read_length) - desc = '%s: seed=%s, read length=%s' % (self.genome, seed, read_length) - index = "%s_base_%s_%s.index" % (self.genome, seed, read_length) - if not os.path.exists( index ): - command = shlex.split("PerM %s %s --readFormat fastq --seed %s -m -s %s" % (self.fafile, read_length, seed, index)) - result = subprocess.call( command ) - if result != 0: - self._log( 'PerM (base) exited with code %s' % result ) - return False - self.locations[ 'nt' ].append( [ key, desc, index ] ) - os.remove( self.fafile ) - return self._perm_cs() - - def _perm_cs( self ): - genome = self.genome - read_length = 50 - if not os.path.exists( 'cs' ): - os.makedirs( 'cs' ) - with WithChDir( 'cs' ): - self._check_link() - for seed in [ 'F3', 'F4' ]: - key = '%s_%s_%s' % (genome, seed, read_length) - desc = '%s: seed=%s, read length=%s' % (genome, seed, read_length) - index = "%s_color_%s_%s.index" % (genome, seed, read_length) - if not os.path.exists( index ): - command = shlex.split("PerM %s %s --readFormat csfastq --seed %s -m -s %s" % (self.fafile, read_length, seed, index)) - result = subprocess.call( command, stderr=self.logfile, stdout=self.logfile ) - if result != 0: - self._log( 'PerM (color) exited with code %s' % result ) - return False - self.locations[ 'cs' ].append( [ key, desc, index ] ) - os.remove( self.fafile ) - temptar = tarfile.open( 'cs.tar', 'w' ) - temptar.add( 'cs' ) - temptar.close() - shutil.rmtree( 'cs' ) - return True - - def _picard( self ): - result = self._do_rsync( '/srma_index/' ) - if result == 0 and os.path.exists( '%s.dict' % self.genome): - self.locations[ 'nt' ].append( self.fafile ) - return True - local_ref = self.fafile - srma = os.path.abspath( os.path.join( self.tooldatapath, 'shared/jars/picard/CreateSequenceDictionary.jar' ) ) - genome = os.path.splitext( self.fafile )[0] - self._check_link() - if not os.path.exists( '%s.fai' % self.fafile ) and not os.path.exists( '%s.fai' % self.genome ): - command = shlex.split( 'samtools faidx %s' % self.fafile ) - subprocess.call( command, stderr=self.logfile ) - command = shlex.split( "java -jar %s R=%s O=%s.dict URI=%s" \ - % ( srma, local_ref, genome, local_ref ) ) - if not os.path.exists( '%s.dict' % self.genome ): - result = subprocess.call( command, stderr=self.logfile, stdout=self.logfile ) - self._log( ' '.join( command ) ) - if result != 0: - self._log( 'Picard exited with code %s' % result ) - return False - self.locations[ 'nt' ].append( self.fafile ) - os.remove( self.fafile ) - return True - - def _sam( self ): - local_ref = self.fafile - local_file = os.path.splitext( self.fafile )[ 0 ] - print 'Trying rsync' - result = self._do_rsync( '/sam_index/' ) - if result == 0 and ( os.path.exists( '%s.fai' % self.fafile ) or os.path.exists( '%s.fai' % self.genome ) ): - self.locations[ 'nt' ].append( '%s.fai' % local_ref ) - return True - self._check_link() - print 'Trying indexer' - command = shlex.split("samtools faidx %s" % local_ref) - result = subprocess.call( command, stderr=self.logfile, stdout=self.logfile ) - if result != 0: - self._log( 'SAM exited with code %s' % result ) - return False - else: - self.locations[ 'nt' ].append( '%s.fai' % local_ref ) - os.remove( local_ref ) - return True - -class WithChDir(): - def __init__( self, target ): - self.working = target - self.previous = os.getcwd() - def __enter__( self ): - os.chdir( self.working ) - def __exit__( self, *args ): - os.chdir( self.previous ) - - -if __name__ == "__main__": - # Parse command line. - parser = optparse.OptionParser() - (options, args) = parser.parse_args() - indexer, infile, outfile, working_dir, rsync_url, tooldata = args - - # Create archive. - idxobj = ManagedIndexer( outfile, infile, working_dir, rsync_url, tooldata ) - returncode = idxobj.run_indexer( indexer ) - if not returncode: - exit(1) - exit(0) diff --git a/lib/galaxy/tools/parameters/output_collect.py b/lib/galaxy/tools/parameters/output_collect.py index 5fb8a9eeb71..31bb93180d9 100644 --- a/lib/galaxy/tools/parameters/output_collect.py +++ b/lib/galaxy/tools/parameters/output_collect.py @@ -14,7 +14,7 @@ DATASET_ID_TOKEN = "DATASET_ID" DEFAULT_EXTRA_FILENAME_PATTERN = r"primary_DATASET_ID_(?P[^_]+)_(?P[^_]+)_(?P[^_]+)(_(?P[^_]+))?" -def collect_primary_datatasets( tool, output, job_working_directory ): +def collect_primary_datasets( tool, output, job_working_directory, input_ext ): app = tool.app sa_session = tool.sa_session new_primary_datasets = {} @@ -66,6 +66,8 @@ def collect_primary_datatasets( tool, output, job_working_directory ): designation = fields_match.designation visible = fields_match.visible ext = fields_match.ext + if ext == "input": + ext = input_ext dbkey = fields_match.dbkey # Create new primary dataset primary_data = app.model.HistoryDatasetAssociation( extension=ext, @@ -98,13 +100,36 @@ def collect_primary_datatasets( tool, output, job_working_directory ): sa_session.flush() primary_data.state = outdata.state #add tool/metadata provided information - new_primary_datasets_attributes = new_primary_datasets.get( os.path.split( filename )[-1] ) + new_primary_datasets_attributes = new_primary_datasets.get( os.path.split( filename )[-1], {} ) if new_primary_datasets_attributes: dataset_att_by_name = dict( ext='extension' ) for att_set in [ 'name', 'info', 'ext', 'dbkey' ]: dataset_att_name = dataset_att_by_name.get( att_set, att_set ) setattr( primary_data, dataset_att_name, new_primary_datasets_attributes.get( att_set, getattr( primary_data, dataset_att_name ) ) ) - primary_data.set_meta() + extra_files_path = new_primary_datasets_attributes.get( 'extra_files', None ) + if extra_files_path: + extra_files_path_joined = os.path.join( job_working_directory, extra_files_path ) + for root, dirs, files in os.walk( extra_files_path_joined ): + extra_dir = os.path.join( primary_data.extra_files_path, root.replace( extra_files_path_joined, '', 1 ).lstrip( os.path.sep ) ) + for f in files: + app.object_store.update_from_file( primary_data.dataset, + extra_dir=extra_dir, + alt_name=f, + file_name=os.path.join( root, f ), + create=True, + dir_only=True, + preserve_symlinks=True + ) + # FIXME: + # since these are placed into the job working dir, let the standard + # Galaxy cleanup methods handle this (for now?) + # there was an extra_files_path dir, attempt to remove it + #shutil.rmtree( extra_files_path_joined ) + metadata_dict = new_primary_datasets_attributes.get( 'metadata', None ) + if metadata_dict: + primary_data.metadata.from_JSON_dict( json_dict=metadata_dict ) + else: + primary_data.set_meta() primary_data.set_peek() sa_session.add( primary_data ) sa_session.flush() diff --git a/lib/galaxy/util/__init__.py b/lib/galaxy/util/__init__.py index d62f5cd8643..93b2d60ac14 100644 --- a/lib/galaxy/util/__init__.py +++ b/lib/galaxy/util/__init__.py @@ -10,7 +10,6 @@ import binascii import collections import errno import grp -import json import logging import os import pickle @@ -24,6 +23,8 @@ import sys import tempfile import threading +from galaxy.util import json + from email.MIMEText import MIMEText from os.path import relpath @@ -312,8 +313,8 @@ def shrink_string_by_size( value, size, join_by="..", left_larger=True, beginnin def pretty_print_json(json_data, is_json_string=False): if is_json_string: - json_data = json.loads(json_data) - return json.dumps(json_data, sort_keys=True, indent=4 * ' ') + json_data = json.from_json_string(json_data) + return json.to_json_string(json_data, sort_keys=True, indent=4) # characters that are valid valid_chars = set(string.letters + string.digits + " -=_.()/+*^,:?!") diff --git a/lib/galaxy/webapps/galaxy/api/genomes.py b/lib/galaxy/webapps/galaxy/api/genomes.py index 9c2adfa0eec..a81dfe8ffea 100644 --- a/lib/galaxy/webapps/galaxy/api/genomes.py +++ b/lib/galaxy/webapps/galaxy/api/genomes.py @@ -1,7 +1,6 @@ from galaxy import web, util from galaxy.web.base.controller import BaseAPIController from galaxy.web.framework.helpers import is_true -from galaxy.webapps.galaxy.controllers.data_admin import build_param_dict as massage def get_id( base, format ): if format: @@ -41,77 +40,3 @@ class GenomesController( BaseAPIController ): else: rval = self.app.genomes.chroms( trans, dbkey=id, num=num, chrom=chrom, low=low ) return rval - - @web.expose_api - def create( self, trans, payload, **kwd ): - """ - POST /api/genomes - Download and/or index a genome. - - Parameters:: - liftover None or array of liftover url partial paths - dbkey DB key of the build to download - indexers POST array of indexers to run after downloading (indexers[] = first, indexers[] = second, ...) - longname a more descriptive name for the genome - func Allowed values: - 'download' Download and index - 'index' Index only - Returns:: - If no error: - dict( status: 'ok', job: ) - - If error: - dict( status: 'error', error: ) - - """ - #??: Planned? - #Parameters:: - # dbkey DB key of the build to download, ignored unless 'UCSC' is specified as the source - # ncbi_name NCBI's genome identifier, ignored unless NCBI is specified as the source - # ensembl_dbkey Ensembl's genome identifier, ignored unless Ensembl is specified as the source - # url_dbkey DB key to use for this build, ignored unless URL is specified as the source - # source Data source for this build. Can be: UCSC, Ensembl, NCBI, URL - # indexers POST array of indexers to run after downloading (indexers[] = first, indexers[] = second, ...) - # func Allowed values: - # 'download' Download and index - # 'index' Index only - params = util.Params( payload ) - paramdict = massage( params, trans ) - func = params.get( 'func', 'download' ) - if func == 'download': - url = paramdict[ 'url' ] - liftover = paramdict[ 'liftover' ] - dbkey = paramdict[ 'dbkey' ] - indexers = paramdict[ 'indexers' ] - longname = paramdict[ 'longname' ] - jobid = trans.app.job_manager.deferred_job_queue.plugins['GenomeTransferPlugin'].create_job( trans, url, dbkey, longname, indexers ) - chainjob = [] - if liftover is not None: - for chain in liftover: - liftover_url = u'ftp://hgdownload.cse.ucsc.edu%s' % chain[0] - from_genome = chain[1] - to_genome = chain[2] - destfile = liftover_url.split('/')[-1].replace('.gz', '') - lochain = trans.app.job_manager.deferred_job_queue.plugins['LiftOverTransferPlugin'].create_job( trans, liftover_url, dbkey, from_genome, to_genome, destfile, jobid ) - chainjob.append( lochain ) - job = trans.app.job_manager.deferred_job_queue.plugins['GenomeTransferPlugin'].get_job_status( jobid ) - job.params['liftover'] = chainjob - trans.app.model.context.current.flush() - return dict( status='ok', job=jobid ) - elif func == 'index': - dbkey = paramdict[ 'dbkey' ] - indexer = [ params.get( 'indexer', None ) ] - longname = None - path = None - for build in trans.app.tool_data_tables.data_tables[ 'all_fasta' ].data: - if build[0] == dbkey: - longname = build[2] - path = build[3] - break - if longname is not None and indexer is not None and path is not None: - jobid = trans.app.job_manager.deferred_job_queue.plugins['GenomeIndexPlugin'].create_job( trans, path, indexer, dbkey, longname ) - return dict( status='ok', job=jobid ) - else: - return dict( status='error', error='Build not %s found in tool data table.' % dbkey ) - else: - return dict( status='error', error='Unkown function selected.' ) diff --git a/lib/galaxy/webapps/galaxy/api/histories.py b/lib/galaxy/webapps/galaxy/api/histories.py index cd4600b7adb..b39f541475c 100644 --- a/lib/galaxy/webapps/galaxy/api/histories.py +++ b/lib/galaxy/webapps/galaxy/api/histories.py @@ -201,7 +201,7 @@ class HistoriesController( BaseAPIController, UsesHistoryMixin, UsesTagsMixin, delete( self, trans, id, **kwd ) * DELETE /api/histories/{id} delete the history with the given ``id`` - .. note:: Currently does not stop any active jobs in the history. + .. note:: Stops all active jobs in the history if purge is set. :type id: str :param id: the encoded id of the history to delete @@ -235,6 +235,10 @@ class HistoriesController( BaseAPIController, UsesHistoryMixin, UsesTagsMixin, for hda in history.datasets: if hda.purged: continue + if hda.creating_job_associations: + job = hda.creating_job_associations[0].job + job.mark_deleted( self.app.config.track_jobs_in_database ) + self.app.job_manager.job_stop_queue.put( job.id ) hda.purged = True trans.sa_session.add( hda ) trans.sa_session.flush() diff --git a/lib/galaxy/webapps/galaxy/api/history_contents.py b/lib/galaxy/webapps/galaxy/api/history_contents.py index cf8666a7cd1..cc0b4becdb7 100644 --- a/lib/galaxy/webapps/galaxy/api/history_contents.py +++ b/lib/galaxy/webapps/galaxy/api/history_contents.py @@ -92,7 +92,7 @@ class HistoryContentsController( BaseAPIController, UsesHistoryDatasetAssociatio else: types = [ 'dataset', "dataset_collection" ] - contents_kwds = {'types': types} + contents_kwds = { 'types': types } if ids: ids = map( lambda id: trans.security.decode_id( id ), ids.split( ',' ) ) contents_kwds[ 'ids' ] = ids @@ -110,14 +110,14 @@ class HistoryContentsController( BaseAPIController, UsesHistoryDatasetAssociatio details = util.listify( details ) for content in history.contents_iter( **contents_kwds ): - if isinstance(content, trans.app.model.HistoryDatasetAssociation): + if isinstance( content, trans.app.model.HistoryDatasetAssociation ): encoded_content_id = trans.security.encode_id( content.id ) detailed = details == 'all' or ( encoded_content_id in details ) if detailed: rval.append( self._detailed_hda_dict( trans, content ) ) else: rval.append( self._summary_hda_dict( trans, history_id, content ) ) - elif isinstance(content, trans.app.model.HistoryDatasetCollectionAssociation): + elif isinstance( content, trans.app.model.HistoryDatasetCollectionAssociation ): rval.append( self.__collection_dict( trans, content ) ) return rval @@ -149,7 +149,8 @@ class HistoryContentsController( BaseAPIController, UsesHistoryDatasetAssociatio } def __collection_dict( self, trans, dataset_collection_instance, view="collection" ): - return dictify_dataset_collection_instance( dataset_collection_instance, security=trans.security, parent=dataset_collection_instance.history, view=view ) + return dictify_dataset_collection_instance( dataset_collection_instance, + security=trans.security, parent=dataset_collection_instance.history, view=view ) def _detailed_hda_dict( self, trans, hda ): """ @@ -201,8 +202,7 @@ class HistoryContentsController( BaseAPIController, UsesHistoryDatasetAssociatio ) return self.__collection_dict( trans, dataset_collection_instance, view="element" ) except Exception, e: - msg = "Error in history API at listing dataset collection: %s" % ( str(e) ) - log.error( msg, exc_info=True ) + log.exception( "Error in history API at listing dataset collection: %s", e ) trans.response.status = 500 return msg diff --git a/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py b/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py index 1027a6c5cc3..c496c15a35d 100644 --- a/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py +++ b/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py @@ -102,7 +102,6 @@ class AdminToolshed( AdminGalaxy ): action='reset_to_install', **kwd ) ) if operation == "purge": - kwd[ 'purge_repository' ] = True return trans.response.send_redirect( web.url_for( controller='admin_toolshed', action='purge_repository', **kwd ) ) @@ -1270,14 +1269,21 @@ class AdminToolshed( AdminGalaxy ): if repository_id is not None: repository = suc.get_installed_tool_shed_repository( trans.app, repository_id ) if repository: - if kwd.get( 'purge_repository', False ): - irm = install_manager.InstallRepositoryManager( trans.app ) - purge_status, purge_message = irm.purge_repository( trans.app, repository ) - if purge_status == 'ok': - new_kwd[ 'status' ] = "done" + if repository.is_new: + if kwd.get( 'purge_repository_button', False ): + irm = trans.app.installed_repository_manager + purge_status, purge_message = irm.purge_repository( repository ) + if purge_status == 'ok': + new_kwd[ 'status' ] = "done" + else: + new_kwd[ 'status' ] = 'error' + new_kwd[ 'message' ] = purge_message else: - new_kwd[ 'status' ] = 'error' - new_kwd[ 'message' ] = purge_message + return trans.fill_template( 'admin/tool_shed_repository/purge_repository_confirmation.mako', + repository=repository ) + else: + new_kwd[ 'status' ] = 'error' + new_kwd[ 'message' ] = 'Repositories must have a New status in order to be purged.' else: new_kwd[ 'status' ] = 'error' new_kwd[ 'message' ] = 'Cannot locate the database record for the repository with encoded id %s.' % str( repository_id ) diff --git a/lib/galaxy/webapps/galaxy/controllers/data_admin.py b/lib/galaxy/webapps/galaxy/controllers/data_admin.py deleted file mode 100644 index 59f36f2c808..00000000000 --- a/lib/galaxy/webapps/galaxy/controllers/data_admin.py +++ /dev/null @@ -1,299 +0,0 @@ -import ftplib -import json -import sys -from galaxy import model, util -from galaxy.jobs import transfer_manager -from galaxy.model.orm import * -from galaxy.web.base.controller import * -from galaxy.web.framework.helpers import grids, iff, time_ago -from library_common import get_comptypes, lucene_search, whoosh_search - - -# Older py compatibility -try: - set() -except: - from sets import Set as set - -import logging -log = logging.getLogger( __name__ ) - -class DataAdmin( BaseUIController ): - jobstyles = dict( - done='panel-done-message', - waiting='state-color-waiting', - running='state-color-running', - downloaded='state-color-running', - new='state-color-new', - ok='panel-done-message', - error='panel-error-message', - queued='state-color-waiting' - ) - - @web.expose - @web.require_admin - def manage_data( self, trans, **kwd ): - if trans.app.config.get_bool( 'enable_beta_job_managers', False ) == False: - return trans.fill_template( '/admin/data_admin/generic_error.mako', message='This feature requires that enable_beta_job_managers be set to True in your Galaxy configuration.' ) - if 'all_fasta' not in trans.app.tool_data_tables.data_tables: - return trans.fill_template( '/admin/data_admin/generic_error.mako', message='The local data manager requires that an all_fasta entry exists in your tool_data_table_conf.xml.' ) - indextable = {} - dbkeys = [] - labels = { 'bowtie_indexes': 'Bowtie', 'bowtie2_indexes': 'Bowtie 2', 'bwa_indexes': 'BWA', 'srma_indexes': 'Picard', 'sam_fa_indexes': 'SAM', 'perm_base_indexes': 'PerM' } - tablenames = { 'Bowtie': 'bowtie_indexes', 'Bowtie 2': 'bowtie2_indexes', 'BWA': 'bwa_indexes', 'Picard': 'srma_indexes', 'SAM': 'sam_fa_indexes', 'PerM': 'perm_base_indexes' } - indexfuncs = dict( bowtie_indexes='bowtie', bowtie2_indexes='bowtie2', bwa_indexes='bwa', srma_indexes='picard', sam_fa_indexes='sam', perm_base_indexes='perm' ) - for genome in trans.app.tool_data_tables.data_tables[ 'all_fasta' ].data: - dbkey = genome[0] - dbkeys.append( dbkey ) - indextable[ dbkey ] = dict( indexes=dict(), name=genome[2], path=genome[3] ) - for genome in indextable: - for label in labels: - indextable[ genome ][ 'indexes' ][ label ] = 'Generate' - if label not in trans.app.tool_data_tables.data_tables: - indextable[ genome ][ 'indexes' ][ label ] = 'Disabled' - else: - for row in trans.app.tool_data_tables.data_tables[ label ].data: - if genome in row or row[0].startswith( genome ): - indextable[ genome ][ 'indexes' ][ label ] = 'Generated' - jobgrid = [] - sa_session = trans.app.model.context.current - jobs = sa_session.query( model.GenomeIndexToolData ).order_by( model.GenomeIndexToolData.created_time.desc() ).filter_by( user_id=trans.get_user().id ).group_by( model.GenomeIndexToolData.deferred ).limit( 20 ).all() - prevjobid = 0 - for job in jobs: - if prevjobid == job.deferred.id: - continue - prevjobid = job.deferred.id - state = job.deferred.state - params = job.deferred.params - if job.transfer is not None: - jobtype = 'download' - else: - jobtype = 'index' - indexers = ', '.join( params['indexes'] ) - jobgrid.append( dict( jobtype=jobtype, indexers=indexers, rowclass=state, deferred=job.deferred.id, state=state, intname=job.deferred.params[ 'intname' ], dbkey=job.deferred.params[ 'dbkey' ] ) ) - styles = dict( Generate=self.jobstyles['new'], Generated=self.jobstyles['ok'], Disabled=self.jobstyles['error'] ) - return trans.fill_template( '/admin/data_admin/local_data.mako', jobgrid=jobgrid, indextable=indextable, labels=labels, dbkeys=dbkeys, styles=styles, indexfuncs=indexfuncs ) - - @web.expose - @web.require_admin - def add_genome( self, trans, **kwd ): - if trans.app.config.get_bool( 'enable_beta_job_managers', False ) == False: - return trans.fill_template( '/admin/data_admin/generic_error.mako', message='This feature requires that enable_beta_job_managers be set to True in your Galaxy configuration.' ) - dbkeys = trans.ucsc_builds - ensemblkeys = trans.ensembl_builds - ncbikeys = trans.ncbi_builds - return trans.fill_template( '/admin/data_admin/data_form.mako', dbkeys=dbkeys, ensembls=ensemblkeys, ncbi=ncbikeys ) - - @web.expose - @web.require_admin - def genome_search( self, trans, **kwd ): - results = list() - ncbikeys = trans.ncbi_builds - params = util.Params( kwd ) - search = params.get( 'q', None ) - limit = params.get( 'limit', None ) - if search is not None: - query = search.lower() - for row in ncbikeys: - if query in row[ 'name' ].lower() or query in row[ 'dbkey' ].lower(): - result = '|'.join( [ ': '.join( [ row[ 'dbkey' ], row[ 'name' ] ] ), row[ 'dbkey' ] ] ) - results.append( result ) - if len( results ) >= limit: - break - return trans.fill_template( '/admin/data_admin/ajax_status.mako', json='\n'.join( results ) ) - - @web.expose - @web.require_admin - def index_build( self, trans, **kwd ): - """Index a previously downloaded genome.""" - params = util.Params( kwd ) - path = os.path.abspath( params.get( 'path', None ) ) - indexes = [ params.get( 'indexes', None ) ] - dbkey = params.get( 'dbkey', None ) - intname = params.get( 'longname', None ) - indexjob = trans.app.job_manager.deferred_job_queue.plugins['GenomeIndexPlugin'].create_job( trans, path, indexes, dbkey, intname ) - return indexjob - - @web.expose - @web.require_admin - def download_build( self, trans, **kwd ): - """Download a genome from a remote source and add it to the library.""" - params = util.Params( kwd ) - paramdict = build_param_dict( params, trans ) - if paramdict[ 'status' ] == 'error': - return trans.fill_template( '/admin/data_admin/generic_error.mako', message=paramdict[ 'message' ] ) - url = paramdict[ 'url' ] - liftover = paramdict[ 'liftover' ] - dbkey = paramdict[ 'dbkey' ] - indexers = paramdict[ 'indexers' ] - longname = paramdict[ 'longname' ] - dbkeys = dict() - protocol = 'http' - if url is None: - return trans.fill_template( '/admin/data_admin/generic_error.mako', message='Unable to generate a valid URL with the specified parameters.' ) - jobid = trans.app.job_manager.deferred_job_queue.plugins['GenomeTransferPlugin'].create_job( trans, url, dbkey, longname, indexers ) - chainjob = [] - if liftover is not None: - for chain in liftover: - liftover_url = u'ftp://hgdownload.cse.ucsc.edu%s' % chain[0] - from_genome = chain[1] - to_genome = chain[2] - destfile = liftover_url.split('/')[-1].replace('.gz', '') - lochain = trans.app.job_manager.deferred_job_queue.plugins['LiftOverTransferPlugin'].create_job( trans, liftover_url, dbkey, from_genome, to_genome, destfile, jobid ) - chainjob.append( lochain ) - job = trans.app.job_manager.deferred_job_queue.plugins['GenomeTransferPlugin'].get_job_status( jobid ) - job.params['liftover'] = chainjob - trans.app.model.context.current.add( job ) - trans.app.model.context.current.flush() - return trans.response.send_redirect( web.url_for( controller='data_admin', - action='monitor_status', - job=jobid ) ) - - @web.expose - @web.require_admin - def monitor_status( self, trans, **kwd ): - params = util.Params( kwd ) - jobid = params.get( 'job', '' ) - deferred = trans.app.model.context.current.query( model.DeferredJob ).filter_by( id=jobid ).first() - if deferred is None: - return trans.fill_template( '/admin/data_admin/generic_error.mako', message='Invalid genome downloader job specified.' ) - gname = deferred.params[ 'intname' ] - indexers = ', '.join( deferred.params[ 'indexes' ] ) - jobs = self._get_jobs( deferred, trans ) - jsonjobs = json.dumps( jobs ) - return trans.fill_template( '/admin/data_admin/download_status.mako', name=gname, indexers=indexers, mainjob=jobid, jobs=jobs, jsonjobs=jsonjobs ) - - @web.expose - @web.require_admin - def get_jobs( self, trans, **kwd ): - sa_session = trans.app.model.context.current - jobs = [] - params = util.Params( kwd ) - jobid = params.get( 'jobid', '' ) - job = sa_session.query( model.DeferredJob ).filter_by( id=jobid ).first() - jobs = self._get_jobs( job, trans ) - return trans.fill_template( '/admin/data_admin/ajax_status.mako', json=json.dumps( jobs ) ) - - def _get_job( self, jobid, jobtype, trans ): - sa = trans.app.model.context.current - if jobtype == 'liftover': - liftoverjob = sa.query( model.DeferredJob ).filter_by( id=jobid ).first() - job = sa.query( model.TransferJob ).filter_by( id=liftoverjob.params[ 'transfer_job_id' ] ).first() - joblabel = 'Download liftOver (%s to %s)' % ( liftoverjob.params[ 'from_genome' ], liftoverjob.params[ 'to_genome' ] ) - elif jobtype == 'transfer': - job = sa.query( model.TransferJob ).filter_by( id=jobid ).first() - joblabel = 'Download Genome' - elif jobtype == 'deferred': - job = sa.query( model.DeferredJob ).filter_by( id=jobid ).first() - joblabel = 'Main Controller' - elif jobtype == 'index': - job = sa.query( model.Job ).filter_by( id=jobid.job_id ).first() - joblabel = 'Index Genome (%s)' % jobid.indexer - return dict( status=job.state, jobid=job.id, style=self.jobstyles[job.state], type=jobtype, label=joblabel ) - - def _get_jobs( self, deferredjob, trans ): - jobs = [] - idxjobs = [] - sa_session = trans.app.model.context.current - job = sa_session.query( model.GenomeIndexToolData ).filter_by( deferred=deferredjob ).first() - jobs.append( self._get_job( deferredjob.id, 'deferred', trans ) ) - if 'transfer_job_id' in deferredjob.params: #hasattr( job, 'transfer' ) and job.transfer is not None: # This is a transfer job, check for indexers - jobs.append( self._get_job( deferredjob.params[ 'transfer_job_id' ], 'transfer', trans ) ) - if hasattr( job, 'deferred' ): - idxjobs = sa_session.query( model.GenomeIndexToolData ).filter_by( deferred=job.deferred, transfer=job.transfer ).all() - if deferredjob.params.has_key( 'liftover' ) and deferredjob.params[ 'liftover' ] is not None: - for jobid in deferredjob.params[ 'liftover' ]: - jobs.append( self._get_job( jobid, 'liftover', trans ) ) - for idxjob in idxjobs: - jobs.append( self._get_job( idxjob, 'index', trans ) ) - return jobs - -def build_param_dict( params, trans ): - - source = params.get('source', '') - longname = params.get('longname', None) - if not isinstance( params.get( 'indexers', None ), list ): - indexers = [ params.get( 'indexers', None ) ] - else: - indexers = params.get( 'indexers', None ) - if indexers is not None: - if indexers == [None]: - indexers = None - url = None - liftover = None - newlift = [] - dbkey = params.get( 'dbkey', None ) - dbkeys = dict() - protocol = 'http' - - if source == 'NCBI': - build = params.get('ncbi_name', '') - dbkey = build.split( ': ' )[0] - longname = build.split( ': ' )[-1] - url = 'http://togows.dbcls.jp/entry/ncbi-nucleotide/%s.fasta' % dbkey - elif source == 'URL': - dbkey = params.get( 'url_dbkey', '' ) - url = params.get( 'url', None ) - longname = params.get( 'longname', None ) - elif source == 'UCSC': - longname = None - for build in trans.ucsc_builds: - if dbkey == build[0]: - dbkey = build[0] - longname = build[1] - break - if dbkey == '?': - return dict( status='error', message='An invalid build was specified.' ) - ftp = ftplib.FTP('hgdownload.cse.ucsc.edu') - ftp.login('anonymous', trans.get_user().email) - checker = [] - liftover = [] - newlift = [] - ftp.retrlines('NLST /goldenPath/%s/liftOver/*.chain.gz' % dbkey, liftover.append) - try: - for chain in liftover: - lifts = [] - fname = chain.split( '/' )[-1] - organisms = fname.replace( '.over.chain.gz', '' ).split( 'To' ) - lifts.append( [ organisms[0], organisms[1][0].lower() + organisms[1][1:] ] ) - lifts.append( [ organisms[1][0].lower() + organisms[1][1:], organisms[0] ] ) - for organism in lifts: - remotepath = '/goldenPath/%s/liftOver/%sTo%s.over.chain.gz' % ( organism[0], organism[0], organism[1][0].upper() + organism[1][1:] ) - localfile = '%sTo%s.over.chain' % ( organism[0], organism[1][0].upper() + organism[1][1:] ) - localpath = os.path.join( trans.app.config.get( 'genome_data_path', 'tool-data/genome' ), organism[0], 'liftOver', localfile ) - if not os.path.exists( localpath ) or os.path.getsize( localpath ) == 0: - newlift.append( [ remotepath, organism[0], organism[1] ] ) - except: - newlift = None - pass - ftp.retrlines('NLST /goldenPath/%s/bigZips/' % dbkey, checker.append) - ftp.quit() - for filename in [ dbkey, 'chromFa' ]: - for extension in [ '.tar.gz', '.tar.bz2', '.zip', '.fa.gz', '.fa.bz2' ]: - testfile = '/goldenPath/%s/bigZips/%s%s' % ( dbkey, filename, extension ) - if testfile in checker: - url = 'ftp://hgdownload.cse.ucsc.edu%s' % testfile - break; - else: - continue - if url is None: - message = 'The genome %s was not found on the UCSC server.' % dbkey - status = 'error' - return dict( status=status, message=message ) - - elif source == 'Ensembl': - dbkey = params.get( 'ensembl_dbkey', None ) - if dbkey == '?': - return dict( status='error', message='An invalid build was specified.' ) - for build in trans.ensembl_builds: - if build[ 'dbkey' ] == dbkey: - dbkey = build[ 'dbkey' ] - release = build[ 'release' ] - pathname = '_'.join( build[ 'name' ].split(' ')[0:2] ) - longname = build[ 'name' ].replace('_', ' ') - break - url = 'ftp://ftp.ensembl.org/pub/release-%s/fasta/%s/dna/%s.%s.%s.dna.toplevel.fa.gz' % ( release, pathname.lower(), pathname, dbkey, release ) - - params = dict( status='ok', dbkey=dbkey, datatype='fasta', url=url, user=trans.user.id, liftover=newlift, longname=longname, indexers=indexers ) - - return params diff --git a/lib/galaxy/webapps/galaxy/controllers/history.py b/lib/galaxy/webapps/galaxy/controllers/history.py index 43fd6f21bff..f272e050bb5 100644 --- a/lib/galaxy/webapps/galaxy/controllers/history.py +++ b/lib/galaxy/webapps/galaxy/controllers/history.py @@ -4,6 +4,7 @@ from cgi import escape import galaxy.util from galaxy import model from galaxy import web +from galaxy import managers from galaxy.datatypes.data import nice_size from galaxy.model.item_attrs import UsesAnnotations, UsesItemRatings from galaxy.model.orm import and_, eagerload_all, func @@ -194,6 +195,12 @@ class HistoryAllPublishedGrid( grids.Grid ): class HistoryController( BaseUIController, SharableMixin, UsesAnnotations, UsesItemRatings, UsesHistoryMixin, UsesHistoryDatasetAssociationMixin, ExportsHistoryMixin, ImportsHistoryMixin ): + def __init__( self, app ): + super( HistoryController, self ).__init__( app ) + self.mgrs = util.bunch.Bunch( + histories=managers.histories.HistoryManager() + ) + @web.expose def index( self, trans ): return "" @@ -204,6 +211,7 @@ class HistoryController( BaseUIController, SharableMixin, UsesAnnotations, UsesI trans.response.set_content_type( 'text/xml' ) return trans.fill_template( "/history/list_as_xml.mako" ) + # ......................................................................... lists stored_list_grid = HistoryListGrid() shared_list_grid = SharedHistoryListGrid() published_list_grid = HistoryAllPublishedGrid() @@ -437,6 +445,7 @@ class HistoryController( BaseUIController, SharableMixin, UsesAnnotations, UsesI # Render the list view return self.shared_list_grid( trans, status=status, message=message, **kwargs ) + # ......................................................................... html @web.expose def display_structured( self, trans, id=None ): """ @@ -511,333 +520,6 @@ class HistoryController( BaseUIController, SharableMixin, UsesAnnotations, UsesI # return trans.fill_template( "history/display_structured.mako", items=items, history=history ) - @web.expose - def delete_hidden_datasets( self, trans ): - """ - This method deletes all hidden datasets in the current history. - """ - count = 0 - for hda in trans.history.datasets: - if not hda.visible and not hda.deleted and not hda.purged: - hda.mark_deleted() - count += 1 - trans.sa_session.add( hda ) - trans.log_event( "HDA id %s has been deleted" % hda.id ) - trans.sa_session.flush() - return trans.show_ok_message( "%d hidden datasets have been deleted" % count, refresh_frames=['history'] ) - - @web.expose - def purge_deleted_datasets( self, trans ): - count = 0 - if trans.app.config.allow_user_dataset_purge: - for hda in trans.history.datasets: - if not hda.deleted or hda.purged: - continue - if trans.user: - trans.user.total_disk_usage -= hda.quota_amount( trans.user ) - hda.purged = True - trans.sa_session.add( hda ) - trans.log_event( "HDA id %s has been purged" % hda.id ) - trans.sa_session.flush() - if hda.dataset.user_can_purge: - try: - hda.dataset.full_delete() - trans.log_event( "Dataset id %s has been purged upon the the purge of HDA id %s" % ( hda.dataset.id, hda.id ) ) - trans.sa_session.add( hda.dataset ) - except: - log.exception( 'Unable to purge dataset (%s) on purge of hda (%s):' % ( hda.dataset.id, hda.id ) ) - count += 1 - return trans.show_ok_message( "%d datasets have been deleted permanently" % count, refresh_frames=['history'] ) - - #TODO: use api instead - @web.expose - def delete_current( self, trans, purge=False ): - """Delete just the active history -- this does not require a logged in user.""" - history = trans.get_history() - if history.users_shared_with: - return trans.show_error_message( "History (%s) has been shared with others, unshare it before deleting it. " % history.name ) - if not history.deleted: - history.deleted = True - trans.sa_session.add( history ) - trans.sa_session.flush() - trans.log_event( "History id %d marked as deleted" % history.id ) - if purge and trans.app.config.allow_user_dataset_purge: - for hda in history.datasets: - if trans.user: - trans.user.total_disk_usage -= hda.quota_amount( trans.user ) - hda.purged = True - trans.sa_session.add( hda ) - trans.log_event( "HDA id %s has been purged" % hda.id ) - trans.sa_session.flush() - if hda.dataset.user_can_purge: - try: - hda.dataset.full_delete() - trans.log_event( "Dataset id %s has been purged upon the the purge of HDA id %s" % ( hda.dataset.id, hda.id ) ) - trans.sa_session.add( hda.dataset ) - except: - log.exception( 'Unable to purge dataset (%s) on purge of hda (%s):' % ( hda.dataset.id, hda.id ) ) - history.purged = True - self.sa_session.add( history ) - self.sa_session.flush() - for hda in history.datasets: - # Not all datasets have jobs associated with them (e.g., datasets imported from libraries). - if hda.creating_job_associations: - # HDA has associated job, so try marking it deleted. - job = hda.creating_job_associations[0].job - if job.history_id == history.id and job.state in [ trans.app.model.Job.states.QUEUED, trans.app.model.Job.states.RUNNING, trans.app.model.Job.states.NEW ]: - # No need to check other outputs since the job's parent history is this history - job.mark_deleted( trans.app.config.track_jobs_in_database ) - trans.app.job_manager.job_stop_queue.put( job.id ) - # Regardless of whether it was previously deleted, get or create default history. - trans.get_or_create_default_history() - return trans.show_ok_message( "History deleted, a new history is active", refresh_frames=['history'] ) - - @web.expose - def unhide_datasets( self, trans, current=False, ids=None ): - """Unhide the datasets in the active history -- this does not require a logged in user.""" - if not ids and galaxy.util.string_as_bool( current ): - histories = [ trans.get_history() ] - refresh_frames = ['history'] - else: - raise NotImplementedError( "You can currently only unhide all the datasets of the current history." ) - for history in histories: - history.unhide_datasets() - trans.sa_session.add( history ) - trans.sa_session.flush() - return trans.show_ok_message( "Your datasets have been unhidden.", refresh_frames=refresh_frames ) - #TODO: used in index.mako - - @web.expose - def resume_paused_jobs( self, trans, current=False, ids=None ): - """Resume paused jobs the active history -- this does not require a logged in user.""" - if not ids and galaxy.util.string_as_bool( current ): - histories = [ trans.get_history() ] - refresh_frames = ['history'] - else: - raise NotImplementedError( "You can currently only resume all the datasets of the current history." ) - for history in histories: - history.resume_paused_jobs() - trans.sa_session.add( history ) - trans.sa_session.flush() - return trans.show_ok_message( "Your jobs have been resumed.", refresh_frames=refresh_frames ) - #TODO: used in index.mako - - @web.expose - @web.require_login( "rate items" ) - @web.json - def rate_async( self, trans, id, rating ): - """ Rate a history asynchronously and return updated community data. """ - history = self.get_history( trans, id, check_ownership=False, check_accessible=True ) - if not history: - return trans.show_error_message( "The specified history does not exist." ) - # Rate history. - history_rating = self.rate_item( trans.sa_session, trans.get_user(), history, rating ) - return self.get_ave_item_rating_data( trans.sa_session, history ) - #TODO: used in display_base.mako - - @web.expose - # TODO: Remove require_login when users are warned that, if they are not - # logged in, this will remove their current history. - @web.require_login( "use Galaxy histories" ) - def import_archive( self, trans, **kwargs ): - """ Import a history from a file archive. """ - # Set archive source and type. - archive_file = kwargs.get( 'archive_file', None ) - archive_url = kwargs.get( 'archive_url', None ) - archive_source = None - if archive_file: - archive_source = archive_file - archive_type = 'file' - elif archive_url: - archive_source = archive_url - archive_type = 'url' - # If no source to create archive from, show form to upload archive or specify URL. - if not archive_source: - return trans.show_form( - web.FormBuilder( web.url_for(controller='history', action='import_archive'), "Import a History from an Archive", submit_text="Submit" ) \ - .add_input( "text", "Archived History URL", "archive_url", value="", error=None ) - # TODO: add support for importing via a file. - #.add_input( "file", "Archived History File", "archive_file", value=None, error=None ) - ) - self.queue_history_import( trans, archive_type=archive_type, archive_source=archive_source ) - return trans.show_message( "Importing history from '%s'. \ - This history will be visible when the import is complete" % archive_source ) - #TODO: used in this file and index.mako - - @web.expose - def export_archive( self, trans, id=None, gzip=True, include_hidden=False, include_deleted=False ): - """ Export a history to an archive. """ - # - # Get history to export. - # - if id: - history = self.get_history( trans, id, check_ownership=False, check_accessible=True ) - else: - # Use current history. - history = trans.history - id = trans.security.encode_id( history.id ) - - if not history: - return trans.show_error_message( "This history does not exist or you cannot export this history." ) - - # - # If history has already been exported and it has not changed since export, stream it. - # - jeha = history.latest_export - if jeha and jeha.up_to_date: - if jeha.ready: - return self.serve_ready_history_export( trans, jeha ) - elif jeha.preparing: - return trans.show_message( "Still exporting history %(n)s; please check back soon. Link: %(s)s" \ - % ( { 'n' : history.name, 's' : url_for( controller='history', action="export_archive", id=id, qualified=True ) } ) ) - - self.queue_history_export( trans, history, gzip=gzip, include_hidden=include_hidden, include_deleted=include_deleted ) - url = url_for( controller='history', action="export_archive", id=id, qualified=True ) - return trans.show_message( "Exporting History '%(n)s'. Use this link to download \ - the archive or import it to another Galaxy server: \ - %(u)s" % ( { 'n' : history.name, 'u' : url } ) ) - #TODO: used in this file and index.mako - - @web.expose - @web.json - @web.require_login( "get history name and link" ) - def get_name_and_link_async( self, trans, id=None ): - """ Returns history's name and link. """ - history = self.get_history( trans, id, False ) - if self.create_item_slug( trans.sa_session, history ): - trans.sa_session.flush() - return_dict = { - "name" : history.name, - "link" : url_for(controller='history', action="display_by_username_and_slug", - username=history.user.username, slug=history.slug ) } - return return_dict - #TODO: used in page/editor.mako - - @web.expose - @web.require_login( "set history's accessible flag" ) - def set_accessible_async( self, trans, id=None, accessible=False ): - """ Set history's importable attribute and slug. """ - history = self.get_history( trans, id, True ) - # Only set if importable value would change; this prevents a change in the update_time unless attribute really changed. - importable = accessible in ['True', 'true', 't', 'T']; - if history and history.importable != importable: - if importable: - self._make_item_accessible( trans.sa_session, history ) - else: - history.importable = importable - trans.sa_session.flush() - return - #TODO: used in page/editor.mako - - @web.expose - def get_item_content_async( self, trans, id ): - """ Returns item content in HTML format. """ - - history = self.get_history( trans, id, False, True ) - if history is None: - raise web.httpexceptions.HTTPNotFound() - - # Get datasets. - datasets = self.get_history_datasets( trans, history ) - # Get annotations. - history.annotation = self.get_item_annotation_str( trans.sa_session, history.user, history ) - for dataset in datasets: - dataset.annotation = self.get_item_annotation_str( trans.sa_session, history.user, dataset ) - return trans.stream_template_mako( "/history/item_content.mako", item = history, item_data = datasets ) - #TODO: used in embed_base.mako - - @web.expose - def name_autocomplete_data( self, trans, q=None, limit=None, timestamp=None ): - """Return autocomplete data for history names""" - user = trans.get_user() - if not user: - return - - ac_data = "" - for history in ( trans.sa_session.query( model.History ) - .filter_by( user=user ) - .filter( func.lower( model.History.name ).like(q.lower() + "%") ) ): - ac_data = ac_data + history.name + "\n" - return ac_data - #TODO: used in grid_base.mako - - @web.expose - def imp( self, trans, id=None, confirm=False, **kwd ): - """Import another user's history via a shared URL""" - msg = "" - user = trans.get_user() - user_history = trans.get_history() - # Set referer message - if 'referer' in kwd: - referer = kwd['referer'] - else: - referer = trans.request.referer - if referer is not "": - referer_message = "return to the previous page" % referer - else: - referer_message = "go to Galaxy's start page" % url_for( '/' ) - - # include all datasets when copying? - all_datasets = util.string_as_bool( kwd.get( 'all_datasets', False ) ) - - # Do import. - if not id: - return trans.show_error_message( "You must specify a history you want to import.
    You can %s." % referer_message, use_panels=True ) - import_history = self.get_history( trans, id, check_ownership=False, check_accessible=False ) - if not import_history: - return trans.show_error_message( "The specified history does not exist.
    You can %s." % referer_message, use_panels=True ) - # History is importable if user is admin or it's accessible. TODO: probably want to have app setting to enable admin access to histories. - if not trans.user_is_admin() and not self.security_check( trans, import_history, check_ownership=False, check_accessible=True ): - return trans.show_error_message( "You cannot access this history.
    You can %s." % referer_message, use_panels=True ) - if user: - #dan: I can import my own history. - #if import_history.user_id == user.id: - # return trans.show_error_message( "You cannot import your own history.
    You can %s." % referer_message, use_panels=True ) - new_history = import_history.copy( target_user=user, all_datasets=all_datasets ) - new_history.name = "imported: " + new_history.name - new_history.user_id = user.id - galaxy_session = trans.get_galaxy_session() - try: - association = trans.sa_session.query( trans.app.model.GalaxySessionToHistoryAssociation ) \ - .filter_by( session_id=galaxy_session.id, history_id=new_history.id ) \ - .first() - except: - association = None - new_history.add_galaxy_session( galaxy_session, association=association ) - trans.sa_session.add( new_history ) - trans.sa_session.flush() - # Set imported history to be user's current history. - trans.set_history( new_history ) - return trans.show_ok_message( - message="""History "%s" has been imported.
    You can start using this history or %s.""" - % ( new_history.name, web.url_for( '/' ), web.url_for( '/' ), referer_message ), use_panels=True ) - - elif not user_history or not user_history.datasets or confirm: - #TODO:?? should anon-users be allowed to include deleted datasets when importing? - #new_history = import_history.copy( activatable=include_deleted ) - new_history = import_history.copy() - new_history.name = "imported: " + new_history.name - new_history.user_id = None - galaxy_session = trans.get_galaxy_session() - try: - association = trans.sa_session.query( trans.app.model.GalaxySessionToHistoryAssociation ) \ - .filter_by( session_id=galaxy_session.id, history_id=new_history.id ) \ - .first() - except: - association = None - new_history.add_galaxy_session( galaxy_session, association=association ) - trans.sa_session.add( new_history ) - trans.sa_session.flush() - trans.set_history( new_history ) - return trans.show_ok_message( - message="""History "%s" has been imported.
    You can start using this history or %s.""" - % ( new_history.name, web.url_for( '/' ), referer_message ), use_panels=True ) - return trans.show_warn_message( """ - Warning! If you import this history, you will lose your current - history.
    You can continue and import this history or %s. - """ % ( web.url_for(controller='history', action='imp', id=id, confirm=True, referer=trans.request.referer ), referer_message ), use_panels=True ) - #TODO: used in history/view, display, embed - @web.expose def view( self, trans, id=None, show_deleted=False, show_hidden=False, use_panels=True ): """ @@ -870,22 +552,9 @@ class HistoryController( BaseUIController, SharableMixin, UsesAnnotations, UsesI + " or the owner of this history has not made it accessible." ) # include all datasets: hidden, deleted, and purged - hdas = self.get_history_datasets( trans, history_to_view, - show_deleted=True, show_hidden=True, show_purged=True ) - for hda in hdas: - hda_dict = {} - try: - hda_dict = self.get_hda_dict( trans, hda ) - - except Exception, exc: - # don't fail entire list if hda err's, record and move on - log.error( 'Error bootstrapping hda %d: %s', hda.id, str( exc ), exc_info=True ) - hda_dict = self.get_hda_dict_with_error( trans, hda, str( exc ) ) - - hda_dictionaries.append( hda_dict ) - - # re-use the hdas above to get the history data... - history_dictionary = self.get_history_dict( trans, history_to_view, hda_dictionaries=hda_dictionaries ) + history_data = self.mgrs.histories._get_history_data( trans, history_to_view ) + history_dictionary = history_data[ 'history' ] + hda_dictionaries = history_data[ 'contents' ] except Exception, exc: user_id = str( trans.user.id ) if trans.user else '(anonymous)' @@ -911,12 +580,6 @@ class HistoryController( BaseUIController, SharableMixin, UsesAnnotations, UsesI # Security check raises error if user cannot access history. self.security_check( trans, history, False, True) - # Get datasets and annotations - datasets = self.get_history_datasets( trans, history ) - history.annotation = self.get_item_annotation_str( trans.sa_session, history.user, history ) - for dataset in datasets: - dataset.annotation = self.get_item_annotation_str( trans.sa_session, history.user, dataset ) - # Get rating data. user_item_rating = 0 if trans.get_user(): @@ -928,20 +591,22 @@ class HistoryController( BaseUIController, SharableMixin, UsesAnnotations, UsesI ave_item_rating, num_ratings = self.get_ave_item_rating_data( trans.sa_session, history ) # create ownership flag for template, dictify models - # note: adding original annotation since this is published - get_dict returns user-based annos user_is_owner = trans.user == history.user - hda_dicts = [] - for hda in datasets: - hda_dict = self.get_hda_dict( trans, hda ) - hda_dict[ 'annotation' ] = hda.annotation - hda_dicts.append( hda_dict ) - history_dict = self.get_history_dict( trans, history, hda_dictionaries=hda_dicts ) - history_dict[ 'annotation' ] = history.annotation + history_data = self.mgrs.histories._get_history_data( trans, history ) + history_dict = history_data[ 'history' ] + hda_dicts = history_data[ 'contents' ] - return trans.stream_template_mako( "history/display.mako", item=history, item_data=datasets, + history_dict[ 'annotation' ] = self.get_item_annotation_str( trans.sa_session, history.user, history ) + # note: adding original annotation since this is published - get_dict returns user-based annos + #for hda_dict in hda_dicts: + # hda_dict[ 'annotation' ] = hda.annotation + # dataset.annotation = self.get_item_annotation_str( trans.sa_session, history.user, dataset ) + + return trans.stream_template_mako( "history/display.mako", item=history, item_data=[], user_is_owner=user_is_owner, history_dict=history_dict, hda_dicts=hda_dicts, user_item_rating = user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings ) + # ......................................................................... sharing & publishing @web.expose @web.require_login( "share Galaxy histories" ) def sharing( self, trans, id=None, histories=[], **kwargs ): @@ -1283,6 +948,334 @@ class HistoryController( BaseUIController, SharableMixin, UsesAnnotations, UsesI msg += send_to_err return self.sharing( trans, histories=shared_histories, msg=msg ) + # ......................................................................... actions/orig. async + @web.expose + def delete_hidden_datasets( self, trans ): + """ + This method deletes all hidden datasets in the current history. + """ + count = 0 + for hda in trans.history.datasets: + if not hda.visible and not hda.deleted and not hda.purged: + hda.mark_deleted() + count += 1 + trans.sa_session.add( hda ) + trans.log_event( "HDA id %s has been deleted" % hda.id ) + trans.sa_session.flush() + return trans.show_ok_message( "%d hidden datasets have been deleted" % count, refresh_frames=['history'] ) + + @web.expose + def purge_deleted_datasets( self, trans ): + count = 0 + if trans.app.config.allow_user_dataset_purge: + for hda in trans.history.datasets: + if not hda.deleted or hda.purged: + continue + if trans.user: + trans.user.total_disk_usage -= hda.quota_amount( trans.user ) + hda.purged = True + trans.sa_session.add( hda ) + trans.log_event( "HDA id %s has been purged" % hda.id ) + trans.sa_session.flush() + if hda.dataset.user_can_purge: + try: + hda.dataset.full_delete() + trans.log_event( "Dataset id %s has been purged upon the the purge of HDA id %s" % ( hda.dataset.id, hda.id ) ) + trans.sa_session.add( hda.dataset ) + except: + log.exception( 'Unable to purge dataset (%s) on purge of hda (%s):' % ( hda.dataset.id, hda.id ) ) + count += 1 + return trans.show_ok_message( "%d datasets have been deleted permanently" % count, refresh_frames=['history'] ) + + #TODO: use api instead + @web.expose + def delete_current( self, trans, purge=False ): + """Delete just the active history -- this does not require a logged in user.""" + history = trans.get_history() + if history.users_shared_with: + return trans.show_error_message( "History (%s) has been shared with others, unshare it before deleting it. " % history.name ) + if not history.deleted: + history.deleted = True + trans.sa_session.add( history ) + trans.sa_session.flush() + trans.log_event( "History id %d marked as deleted" % history.id ) + if purge and trans.app.config.allow_user_dataset_purge: + for hda in history.datasets: + if trans.user: + trans.user.total_disk_usage -= hda.quota_amount( trans.user ) + hda.purged = True + trans.sa_session.add( hda ) + trans.log_event( "HDA id %s has been purged" % hda.id ) + trans.sa_session.flush() + if hda.dataset.user_can_purge: + try: + hda.dataset.full_delete() + trans.log_event( "Dataset id %s has been purged upon the the purge of HDA id %s" % ( hda.dataset.id, hda.id ) ) + trans.sa_session.add( hda.dataset ) + except: + log.exception( 'Unable to purge dataset (%s) on purge of hda (%s):' % ( hda.dataset.id, hda.id ) ) + history.purged = True + self.sa_session.add( history ) + self.sa_session.flush() + for hda in history.datasets: + # Not all datasets have jobs associated with them (e.g., datasets imported from libraries). + if hda.creating_job_associations: + # HDA has associated job, so try marking it deleted. + job = hda.creating_job_associations[0].job + if job.history_id == history.id and job.state in [ trans.app.model.Job.states.QUEUED, trans.app.model.Job.states.RUNNING, trans.app.model.Job.states.NEW ]: + # No need to check other outputs since the job's parent history is this history + job.mark_deleted( trans.app.config.track_jobs_in_database ) + trans.app.job_manager.job_stop_queue.put( job.id ) + # Regardless of whether it was previously deleted, get or create default history. + trans.get_or_create_default_history() + return trans.show_ok_message( "History deleted, a new history is active", refresh_frames=['history'] ) + + @web.expose + def unhide_datasets( self, trans, current=False, ids=None ): + """Unhide the datasets in the active history -- this does not require a logged in user.""" + if not ids and galaxy.util.string_as_bool( current ): + histories = [ trans.get_history() ] + refresh_frames = ['history'] + else: + raise NotImplementedError( "You can currently only unhide all the datasets of the current history." ) + for history in histories: + history.unhide_datasets() + trans.sa_session.add( history ) + trans.sa_session.flush() + return trans.show_ok_message( "Your datasets have been unhidden.", refresh_frames=refresh_frames ) + #TODO: used in index.mako + + @web.expose + def resume_paused_jobs( self, trans, current=False, ids=None ): + """Resume paused jobs the active history -- this does not require a logged in user.""" + if not ids and galaxy.util.string_as_bool( current ): + histories = [ trans.get_history() ] + refresh_frames = ['history'] + else: + raise NotImplementedError( "You can currently only resume all the datasets of the current history." ) + for history in histories: + history.resume_paused_jobs() + trans.sa_session.add( history ) + trans.sa_session.flush() + return trans.show_ok_message( "Your jobs have been resumed.", refresh_frames=refresh_frames ) + #TODO: used in index.mako + + @web.expose + @web.require_login( "rate items" ) + @web.json + def rate_async( self, trans, id, rating ): + """ Rate a history asynchronously and return updated community data. """ + history = self.get_history( trans, id, check_ownership=False, check_accessible=True ) + if not history: + return trans.show_error_message( "The specified history does not exist." ) + # Rate history. + history_rating = self.rate_item( trans.sa_session, trans.get_user(), history, rating ) + return self.get_ave_item_rating_data( trans.sa_session, history ) + #TODO: used in display_base.mako + + @web.expose + # TODO: Remove require_login when users are warned that, if they are not + # logged in, this will remove their current history. + @web.require_login( "use Galaxy histories" ) + def import_archive( self, trans, **kwargs ): + """ Import a history from a file archive. """ + # Set archive source and type. + archive_file = kwargs.get( 'archive_file', None ) + archive_url = kwargs.get( 'archive_url', None ) + archive_source = None + if archive_file: + archive_source = archive_file + archive_type = 'file' + elif archive_url: + archive_source = archive_url + archive_type = 'url' + # If no source to create archive from, show form to upload archive or specify URL. + if not archive_source: + return trans.show_form( + web.FormBuilder( web.url_for(controller='history', action='import_archive'), "Import a History from an Archive", submit_text="Submit" ) \ + .add_input( "text", "Archived History URL", "archive_url", value="", error=None ) + # TODO: add support for importing via a file. + #.add_input( "file", "Archived History File", "archive_file", value=None, error=None ) + ) + self.queue_history_import( trans, archive_type=archive_type, archive_source=archive_source ) + return trans.show_message( "Importing history from '%s'. \ + This history will be visible when the import is complete" % archive_source ) + #TODO: used in this file and index.mako + + @web.expose + def export_archive( self, trans, id=None, gzip=True, include_hidden=False, include_deleted=False ): + """ Export a history to an archive. """ + # + # Get history to export. + # + if id: + history = self.get_history( trans, id, check_ownership=False, check_accessible=True ) + else: + # Use current history. + history = trans.history + id = trans.security.encode_id( history.id ) + + if not history: + return trans.show_error_message( "This history does not exist or you cannot export this history." ) + + # + # If history has already been exported and it has not changed since export, stream it. + # + jeha = history.latest_export + if jeha and jeha.up_to_date: + if jeha.ready: + return self.serve_ready_history_export( trans, jeha ) + elif jeha.preparing: + return trans.show_message( "Still exporting history %(n)s; please check back soon. Link: %(s)s" \ + % ( { 'n' : history.name, 's' : url_for( controller='history', action="export_archive", id=id, qualified=True ) } ) ) + + self.queue_history_export( trans, history, gzip=gzip, include_hidden=include_hidden, include_deleted=include_deleted ) + url = url_for( controller='history', action="export_archive", id=id, qualified=True ) + return trans.show_message( "Exporting History '%(n)s'. Use this link to download \ + the archive or import it to another Galaxy server: \ + %(u)s" % ( { 'n' : history.name, 'u' : url } ) ) + #TODO: used in this file and index.mako + + @web.expose + @web.json + @web.require_login( "get history name and link" ) + def get_name_and_link_async( self, trans, id=None ): + """ Returns history's name and link. """ + history = self.get_history( trans, id, False ) + if self.create_item_slug( trans.sa_session, history ): + trans.sa_session.flush() + return_dict = { + "name" : history.name, + "link" : url_for(controller='history', action="display_by_username_and_slug", + username=history.user.username, slug=history.slug ) } + return return_dict + #TODO: used in page/editor.mako + + @web.expose + @web.require_login( "set history's accessible flag" ) + def set_accessible_async( self, trans, id=None, accessible=False ): + """ Set history's importable attribute and slug. """ + history = self.get_history( trans, id, True ) + # Only set if importable value would change; this prevents a change in the update_time unless attribute really changed. + importable = accessible in ['True', 'true', 't', 'T']; + if history and history.importable != importable: + if importable: + self._make_item_accessible( trans.sa_session, history ) + else: + history.importable = importable + trans.sa_session.flush() + return + #TODO: used in page/editor.mako + + @web.expose + def get_item_content_async( self, trans, id ): + """ Returns item content in HTML format. """ + + history = self.get_history( trans, id, False, True ) + if history is None: + raise web.httpexceptions.HTTPNotFound() + + # Get datasets. + datasets = self.get_history_datasets( trans, history ) + # Get annotations. + history.annotation = self.get_item_annotation_str( trans.sa_session, history.user, history ) + for dataset in datasets: + dataset.annotation = self.get_item_annotation_str( trans.sa_session, history.user, dataset ) + return trans.stream_template_mako( "/history/item_content.mako", item = history, item_data = datasets ) + #TODO: used in embed_base.mako + + @web.expose + def name_autocomplete_data( self, trans, q=None, limit=None, timestamp=None ): + """Return autocomplete data for history names""" + user = trans.get_user() + if not user: + return + + ac_data = "" + for history in ( trans.sa_session.query( model.History ) + .filter_by( user=user ) + .filter( func.lower( model.History.name ).like(q.lower() + "%") ) ): + ac_data = ac_data + history.name + "\n" + return ac_data + #TODO: used in grid_base.mako + + @web.expose + def imp( self, trans, id=None, confirm=False, **kwd ): + """Import another user's history via a shared URL""" + msg = "" + user = trans.get_user() + user_history = trans.get_history() + # Set referer message + if 'referer' in kwd: + referer = kwd['referer'] + else: + referer = trans.request.referer + if referer is not "": + referer_message = "return to the previous page" % referer + else: + referer_message = "go to Galaxy's start page" % url_for( '/' ) + + # include all datasets when copying? + all_datasets = util.string_as_bool( kwd.get( 'all_datasets', False ) ) + + # Do import. + if not id: + return trans.show_error_message( "You must specify a history you want to import.
    You can %s." % referer_message, use_panels=True ) + import_history = self.get_history( trans, id, check_ownership=False, check_accessible=False ) + if not import_history: + return trans.show_error_message( "The specified history does not exist.
    You can %s." % referer_message, use_panels=True ) + # History is importable if user is admin or it's accessible. TODO: probably want to have app setting to enable admin access to histories. + if not trans.user_is_admin() and not self.security_check( trans, import_history, check_ownership=False, check_accessible=True ): + return trans.show_error_message( "You cannot access this history.
    You can %s." % referer_message, use_panels=True ) + if user: + #dan: I can import my own history. + #if import_history.user_id == user.id: + # return trans.show_error_message( "You cannot import your own history.
    You can %s." % referer_message, use_panels=True ) + new_history = import_history.copy( target_user=user, all_datasets=all_datasets ) + new_history.name = "imported: " + new_history.name + new_history.user_id = user.id + galaxy_session = trans.get_galaxy_session() + try: + association = trans.sa_session.query( trans.app.model.GalaxySessionToHistoryAssociation ) \ + .filter_by( session_id=galaxy_session.id, history_id=new_history.id ) \ + .first() + except: + association = None + new_history.add_galaxy_session( galaxy_session, association=association ) + trans.sa_session.add( new_history ) + trans.sa_session.flush() + # Set imported history to be user's current history. + trans.set_history( new_history ) + return trans.show_ok_message( + message="""History "%s" has been imported.
    You can start using this history or %s.""" + % ( new_history.name, web.url_for( '/' ), web.url_for( '/' ), referer_message ), use_panels=True ) + + elif not user_history or not user_history.datasets or confirm: + #TODO:?? should anon-users be allowed to include deleted datasets when importing? + #new_history = import_history.copy( activatable=include_deleted ) + new_history = import_history.copy() + new_history.name = "imported: " + new_history.name + new_history.user_id = None + galaxy_session = trans.get_galaxy_session() + try: + association = trans.sa_session.query( trans.app.model.GalaxySessionToHistoryAssociation ) \ + .filter_by( session_id=galaxy_session.id, history_id=new_history.id ) \ + .first() + except: + association = None + new_history.add_galaxy_session( galaxy_session, association=association ) + trans.sa_session.add( new_history ) + trans.sa_session.flush() + trans.set_history( new_history ) + return trans.show_ok_message( + message="""History "%s" has been imported.
    You can start using this history or %s.""" + % ( new_history.name, web.url_for( '/' ), referer_message ), use_panels=True ) + return trans.show_warn_message( """ + Warning! If you import this history, you will lose your current + history.
    You can continue and import this history or %s. + """ % ( web.url_for(controller='history', action='imp', id=id, confirm=True, referer=trans.request.referer ), referer_message ), use_panels=True ) + #TODO: used in history/view, display, embed + @web.expose @web.require_login( "rename histories" ) def rename( self, trans, id=None, name=None, **kwd ): @@ -1361,7 +1354,8 @@ class HistoryController( BaseUIController, SharableMixin, UsesAnnotations, UsesI name += " (active items only)" new_history = history.copy( name=name, target_user=user ) if len( histories ) == 1: - msg = 'New history "%s" has been created.' % ( url_for( controller="history", action="switch_to_history", hist_id=trans.security.encode_id( new_history.id ) ) , new_history.name ) + switch_url = url_for( controller="history", action="switch_to_history", hist_id=trans.security.encode_id( new_history.id ) ) + msg = 'New history "%s" has been created.' % ( switch_url, new_history.name ) else: msg = 'Copied and created %d new histories.' % len( histories ) return trans.show_ok_message( msg ) diff --git a/lib/galaxy/webapps/galaxy/controllers/root.py b/lib/galaxy/webapps/galaxy/controllers/root.py index acd110c9147..375341e22e5 100644 --- a/lib/galaxy/webapps/galaxy/controllers/root.py +++ b/lib/galaxy/webapps/galaxy/controllers/root.py @@ -7,20 +7,28 @@ import urllib from paste.httpexceptions import HTTPNotFound, HTTPBadGateway +from galaxy.web.base.controller import BaseUIController, UsesHistoryDatasetAssociationMixin, UsesHistoryMixin +from galaxy import managers + from galaxy import web from galaxy.web import url_for from galaxy.model.item_attrs import UsesAnnotations +from galaxy import util from galaxy.util import listify, Params, string_as_bool, string_as_bool_or_none -from galaxy.web.base.controller import BaseUIController, UsesHistoryDatasetAssociationMixin, UsesHistoryMixin from galaxy.util.json import to_json_string -from galaxy.util.debugging import SimpleProfiler - import logging log = logging.getLogger( __name__ ) class RootController( BaseUIController, UsesHistoryMixin, UsesHistoryDatasetAssociationMixin, UsesAnnotations ): - """Controller class that maps to the url root of Galaxy (i.e. '/').""" + """ + Controller class that maps to the url root of Galaxy (i.e. '/'). + """ + def __init__( self, app ): + super( RootController, self ).__init__( app ) + self.mgrs = util.bunch.Bunch( + histories=managers.histories.HistoryManager() + ) @web.expose def default(self, trans, target1=None, target2=None, **kwd): @@ -100,42 +108,6 @@ class RootController( BaseUIController, UsesHistoryMixin, UsesHistoryDatasetAsso show_deleted=string_as_bool( show_deleted ), show_hidden=string_as_bool( show_hidden ) ) - def _get_current_history_data( self, trans ): - history_dictionary = {} - hda_dictionaries = [] - - try: - history = trans.get_history( create=True ) - hdas = self.get_history_datasets( trans, history, - show_deleted=True, show_hidden=True, show_purged=True ) - - for hda in hdas: - hda_dict = {} - try: - hda_dict = self.get_hda_dict( trans, hda ) - - except Exception, exc: - # don't fail entire list if hda err's, record and move on - log.error( 'Error bootstrapping hda %d: %s', hda.id, str( exc ), exc_info=True ) - hda_dict = self.get_hda_dict_with_error( trans, hda, str( exc ) ) - - hda_dictionaries.append( hda_dict ) - - # re-use the hdas above to get the history data... - history_dictionary = self.get_history_dict( trans, history, hda_dictionaries=hda_dictionaries ) - - except Exception, exc: - user_id = str( trans.user.id ) if trans.user else '(anonymous)' - log.exception( 'Error bootstrapping history for user %s: %s', user_id, str( exc ) ) - message = ( 'An error occurred getting the history data from the server. ' - + 'Please contact a Galaxy administrator if the problem persists.' ) - history_dictionary[ 'error' ] = message - - return { - 'history' : history_dictionary, - 'hdas' : hda_dictionaries - } - @web.expose def history( self, trans, as_xml=False, show_deleted=None, show_hidden=None, **kwd ): """ @@ -154,11 +126,11 @@ class RootController( BaseUIController, UsesHistoryMixin, UsesHistoryDatasetAsso show_hidden = string_as_bool_or_none( show_hidden ) history_dictionary = {} - hda_dictionaries = [] + hda_dictionaries = [] try: - history_data = self._get_current_history_data( trans ) + history_data = self.mgrs.histories._get_history_data( trans, trans.get_history( create=True ) ) history_dictionary = history_data[ 'history' ] - hda_dictionaries = history_data[ 'hdas' ] + hda_dictionaries = history_data[ 'contents' ] except Exception, exc: user_id = str( trans.user.id ) if trans.user else '(anonymous)' @@ -170,6 +142,7 @@ class RootController( BaseUIController, UsesHistoryMixin, UsesHistoryDatasetAsso history = history_dictionary, hdas = hda_dictionaries, show_deleted=show_deleted, show_hidden=show_hidden ) + ## ---- Dataset display / editing ---------------------------------------- @web.expose def display( self, trans, id=None, hid=None, tofile=None, toext=".txt", encoded_id=None, **kwd ): diff --git a/lib/galaxy/webapps/tool_shed/api/repositories.py b/lib/galaxy/webapps/tool_shed/api/repositories.py index 11da8881392..fbeb43230a1 100644 --- a/lib/galaxy/webapps/tool_shed/api/repositories.py +++ b/lib/galaxy/webapps/tool_shed/api/repositories.py @@ -7,6 +7,7 @@ from time import strftime from galaxy import eggs from galaxy import util from galaxy import web +from galaxy.model.orm import and_ from galaxy.web.base.controller import BaseAPIController from galaxy.web.base.controller import HTTPBadRequest from galaxy.web.framework.helpers import time_ago @@ -297,16 +298,28 @@ class RepositoriesController( BaseAPIController ): return return_dict @web.expose_api_anonymous - def index( self, trans, deleted=False, **kwd ): + def index( self, trans, deleted=False, owner=None, name=None, **kwd ): """ GET /api/repositories + + :param deleted: True/False, displays repositories that are or are not set to deleted. + :param owner: the owner's public username. + :param name: the repository name. + Displays a collection (list) of repositories. """ # Example URL: http://localhost:9009/api/repositories repository_dicts = [] deleted = util.asbool( deleted ) + clause_list = [ and_( trans.app.model.Repository.table.c.deprecated == False, + trans.app.model.Repository.table.c.deleted == deleted ) ] + if owner is not None: + clause_list.append( and_( trans.app.model.User.table.c.username == owner, + trans.app.model.Repository.table.c.user_id == trans.app.model.User.table.c.id ) ) + if name is not None: + clause_list.append( trans.app.model.Repository.table.c.name == name ) for repository in trans.sa_session.query( trans.app.model.Repository ) \ - .filter( trans.app.model.Repository.table.c.deleted == deleted ) \ + .filter( *clause_list ) \ .order_by( trans.app.model.Repository.table.c.name ): repository_dict = repository.to_dict( view='collection', value_mapper=self.__get_value_mapper( trans ) ) diff --git a/lib/galaxy/webapps/tool_shed/config.py b/lib/galaxy/webapps/tool_shed/config.py index f34a2e49d87..d43437d336a 100644 --- a/lib/galaxy/webapps/tool_shed/config.py +++ b/lib/galaxy/webapps/tool_shed/config.py @@ -65,6 +65,8 @@ class Configuration( object ): self.tool_dependency_dir = None self.use_tool_dependencies = False self.update_integrated_tool_panel = False + # Galaxy flavor Docker Image + self.enable_galaxy_flavor_docker_image = string_as_bool( kwargs.get( "enable_galaxy_flavor_docker_image", "False" ) ) self.use_remote_user = string_as_bool( kwargs.get( "use_remote_user", "False" ) ) self.user_activation_on = kwargs.get( 'user_activation_on', None ) self.activation_grace_period = kwargs.get( 'activation_grace_period', None ) diff --git a/lib/galaxy/webapps/tool_shed/controllers/repository.py b/lib/galaxy/webapps/tool_shed/controllers/repository.py index 912606a256e..f74a723da55 100644 --- a/lib/galaxy/webapps/tool_shed/controllers/repository.py +++ b/lib/galaxy/webapps/tool_shed/controllers/repository.py @@ -55,6 +55,7 @@ class RepositoryController( BaseUIController, ratings_util.ItemRatings ): datatypes_grid = repository_grids.DatatypesGrid() deprecated_repositories_i_own_grid = repository_grids.DeprecatedRepositoriesIOwnGrid() email_alerts_repository_grid = repository_grids.EmailAlertsRepositoryGrid() + docker_image_grid = repository_grids.DockerImageGrid() install_matched_repository_grid = repository_grids.InstallMatchedRepositoryGrid() matched_repository_grid = repository_grids.MatchedRepositoryGrid() my_writable_repositories_grid = repository_grids.MyWritableRepositoriesGrid() @@ -985,6 +986,62 @@ class RepositoryController( BaseUIController, ratings_util.ItemRatings ): # Do all we can to eliminate spam. return trans.show_error_message( "You must be logged in to contact the owner of a repository." ) + @web.expose + def create_galaxy_docker_image( self, trans, **kwd ): + message = kwd.get( 'message', '' ) + status = kwd.get( 'status', 'done' ) + repository_ids = util.listify( kwd.get( 'id', '' ) ) + if 'operation' in kwd: + if repository_ids: + operation = kwd[ 'operation' ].lower() + if operation == "include in docker image": + repository_tups = [] + for repository_id in repository_ids: + repository = suc.get_repository_by_id( trans.app, repository_id ) + repository_tups.append( ( str( repository.name ), + str( repository.user.username ), + str( repository.type ) ) ) + return trans.fill_template( "/webapps/tool_shed/repository/docker_image_repositories.mako", + id=','.join( repository_ids ), + repository_tups=repository_tups, + message=message, + status=status ) + else: + # This can only occur when there is a multi-select grid with check boxes and an operation, + # and the user clicked the operation button without checking any of the check boxes. + kwd[ 'message' ] = "No items were selected." + kwd[ 'status' ] = 'error' + elif kwd.get( 'create_docker_image_button', False ): + tmp_image_dir = tempfile.mkdtemp( prefix="tmp-toolshed-cdidir" ) + docker_file_name = 'Dockerfile' + docker_file_path = os.path.join( tmp_image_dir, docker_file_name ) + tool_shed_url = tool_shed_url = web.url_for( '/', qualified=True ) + repository_string = '' + for repository_id in repository_ids: + repository = suc.get_repository_by_id( trans.app, repository_id ) + template = basic_util.SELECTED_REPOSITORIES_TEMPLATE + repository_template = \ + string.Template( template ).safe_substitute( tool_shed_url=tool_shed_url, + repository_owner=str( repository.user.username ) , + repository_name=str( repository.name ) ) + repository_string = '%s\n%s' % ( repository_string, repository_template ) + template = basic_util.DOCKER_IMAGE_TEMPLATE + docker_image_template = \ + string.Template( template ).safe_substitute( selected_repositories=repository_string ) + docker_image_string = docker_image_template + trans.response.set_content_type( 'application/text/plain' ) + trans.response.headers[ "Content-Disposition" ] = 'attachment; filename="%s"' % docker_file_name + opened_file = open( docker_file_path, "w" ) + opened_file.write( docker_image_string ) + opened_file.close() + opened_file = open( docker_file_path, "r" ) + # Make sure the file is removed from disk after the contents have been downloaded. + os.unlink( docker_file_path ) + docker_file_path, docker_file_name = os.path.split( docker_file_path ) + basic_util.remove_dir( docker_file_path ) + return opened_file + return self.docker_image_grid( trans, **kwd ) + @web.expose def create_repository( self, trans, **kwd ): message = kwd.get( 'message', '' ) diff --git a/lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py b/lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py index f621335a029..9da421a8f35 100644 --- a/lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py +++ b/lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py @@ -194,9 +194,7 @@ class InstalledRepositoryGrid( grids.Grid ): grids.GridOperation( label="Deactivate or uninstall", condition=( lambda item: \ not item.deleted and \ - item.status not in \ - [ tool_shed_install.ToolShedRepository.installation_status.ERROR, - tool_shed_install.ToolShedRepository.installation_status.NEW ] ), + item.status != tool_shed_install.ToolShedRepository.installation_status.NEW ), allow_multiple=False, url_args=dict( controller='admin_toolshed', action='browse_repositories', diff --git a/lib/tool_shed/galaxy_install/install_manager.py b/lib/tool_shed/galaxy_install/install_manager.py index 751b9cded3c..e38a97007c0 100644 --- a/lib/tool_shed/galaxy_install/install_manager.py +++ b/lib/tool_shed/galaxy_install/install_manager.py @@ -44,8 +44,9 @@ class InstallToolDependencyManager( object ): def __init__( self, app ): self.app = app - self.INSTALL_ACTIONS = [ 'download_binary', 'download_by_url', 'download_file', 'setup_perl_environmnet', - 'setup_r_environmnet', 'setup_ruby_environmnet', 'shell_command' ] + self.INSTALL_ACTIONS = [ 'download_binary', 'download_by_url', 'download_file', + 'setup_perl_environment', 'setup_python_environment', + 'setup_r_environment', 'setup_ruby_environment', 'shell_command' ] def format_traceback( self ): ex_type, ex, tb = sys.exc_info() diff --git a/lib/tool_shed/galaxy_install/installed_repository_manager.py b/lib/tool_shed/galaxy_install/installed_repository_manager.py index 154e265ceea..5239ae5ab5d 100644 --- a/lib/tool_shed/galaxy_install/installed_repository_manager.py +++ b/lib/tool_shed/galaxy_install/installed_repository_manager.py @@ -718,7 +718,7 @@ class InstalledRepositoryManager( object ): if installed_repository_dict[ 'display_path' ]: datatype_util.load_installed_display_applications( self.app, installed_repository_dict, deactivate=deactivate ) - def purge_repository( self, app, repository ): + def purge_repository( self, repository ): """Purge a repository with status New (a white ghost) from the database.""" sa_session = self.app.model.context.current status = 'ok' @@ -732,24 +732,26 @@ class InstalledRepositoryManager( object ): # Purge this repository's associated tool versions. if repository.tool_versions: for tool_version in repository.tool_versions: - try: - tool_version_association = tool_version.parent_tool_association - sa_session.delete( tool_version_association ) - sa_session.flush() - except Exception, e: - status = 'error' - message = 'Error attempting to purge tool_versions for the repository named %s with status %s: %s.' % \ - ( str( repository.name ), str( repository.status ), str( e ) ) - return status, message - try: - tool_version_association = tool_version.child_tool_association - sa_session.delete( tool_version_association ) - sa_session.flush() - except Exception, e: - status = 'error' - message = 'Error attempting to purge tool_versions for the repository named %s with status %s: %s.' % \ - ( str( repository.name ), str( repository.status ), str( e ) ) - return status, message + if tool_version.parent_tool_association: + for tool_version_association in tool_version.parent_tool_association: + try: + sa_session.delete( tool_version_association ) + sa_session.flush() + except Exception, e: + status = 'error' + message = 'Error attempting to purge tool_versions for the repository named %s with status %s: %s.' % \ + ( str( repository.name ), str( repository.status ), str( e ) ) + return status, message + if tool_version.child_tool_association: + for tool_version_association in tool_version.child_tool_association: + try: + sa_session.delete( tool_version_association ) + sa_session.flush() + except Exception, e: + status = 'error' + message = 'Error attempting to purge tool_versions for the repository named %s with status %s: %s.' % \ + ( str( repository.name ), str( repository.status ), str( e ) ) + return status, message try: sa_session.delete( tool_version ) sa_session.flush() diff --git a/lib/tool_shed/galaxy_install/tool_dependencies/env_manager.py b/lib/tool_shed/galaxy_install/tool_dependencies/env_manager.py index 096cba8404b..c896a57a196 100644 --- a/lib/tool_shed/galaxy_install/tool_dependencies/env_manager.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/env_manager.py @@ -124,7 +124,7 @@ class EnvManager( object ): Parse an XML tag set to discover all child repository dependency tags and define the path to an env.sh file associated with the repository (this requires the repository dependency to be in an installed state). The received action_dict will be updated with these discovered paths and returned to the caller. This method handles tool dependency definition - tag sets , and . + tag sets , , and . """ # An example elem is: # diff --git a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py index 46d691b4324..92216e91df5 100644 --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py @@ -54,6 +54,7 @@ class StepManager( object ): setup_perl_environment=step_handler.SetupPerlEnvironment( self.app ), setup_r_environment=step_handler.SetupREnvironment( self.app ), setup_ruby_environment=step_handler.SetupRubyEnvironment( self.app ), + setup_python_environment=step_handler.SetupPythonEnvironment( self.app ), setup_virtualenv=step_handler.SetupVirtualEnv( self.app ), shell_command=step_handler.ShellCommand( self.app ), template_command=step_handler.TemplateCommand( self.app ) ) diff --git a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py index 0acfd365574..df62967a329 100644 --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -8,6 +8,7 @@ import tarfile import time import urllib2 import zipfile +import hashlib from galaxy.util import asbool from galaxy.util.template import fill_template @@ -139,10 +140,29 @@ class CompressedFile( object ): class Download( object ): def url_download( self, install_dir, downloaded_file_name, download_url, extract=True ): + """ + The given download_url can have an extension like #md5# or #sha256#. + This indicates a checksum which will be chekced after download. + If the checksum does not match an exception is thrown. + + https://pypi.python.org/packages/source/k/khmer/khmer-1.0.tar.gz#md5#b60639a8b2939836f66495b9a88df757 + """ + file_path = os.path.join( install_dir, downloaded_file_name ) src = None dst = None + checksum = None + sha256 = False + md5 = False # Set a timer so we don't sit here forever. + + if '#md5#' in download_url: + md5 = True + download_url, checksum = download_url.split('#md5#') + elif '#sha256#' in download_url: + sha256 = True + download_url, checksum = download_url.split('#sha256#') + start_time = time.time() try: src = urllib2.urlopen( download_url ) @@ -166,6 +186,18 @@ class Download( object ): src.close() if dst: dst.close() + + try: + if sha256: + downloaded_checksum = hashlib.sha256(open(file_path, 'rb').read()).hexdigest() + elif md5: + downloaded_checksum = hashlib.md5(open(file_path, 'rb').read()).hexdigest() + + if checksum and downloaded_checksum != checksum: + raise Exception( 'Given checksum does not match with the one from the downloaded file (%s).' % (downloaded_checksum) ) + except Exception, e: + raise + if extract: if tarfile.is_tarfile( file_path ) or ( zipfile.is_zipfile( file_path ) and not file_path.endswith( '.jar' ) ): archive = CompressedFile( file_path ) @@ -174,6 +206,7 @@ class Download( object ): extraction_path = os.path.abspath( install_dir ) else: extraction_path = os.path.abspath( install_dir ) + return extraction_path @@ -1390,6 +1423,139 @@ class SetupRubyEnvironment( Download, RecipeStep ): return action_dict +class SetupPythonEnvironment( Download, RecipeStep ): + + def __init__( self, app ): + self.app = app + self.type = 'setup_python_environment' + + def execute_step( self, tool_dependency, package_name, actions, action_dict, filtered_actions, env_file_builder, + install_environment, work_dir, current_dir=None, initial_download=False ): + """ + Initialize the environment for installing Python packages. The class is called during the initial + download stage when installing packages, so the value of initial_download will generally be True. + However, the parameter value allows this class to also be used in the second stage of the installation, + although it may never be necessary. If initial_download is True, the recipe steps will be filtered + and returned and the installation directory (i.e., dir) will be defined and returned. If we're not + in the initial download stage, these actions will not occur, and None values will be returned for them. + + Warning: easy_install is configured that it will not be install any dependency, the tool developer needs + to specify every dependency explicitly + """ + # + # + # + # + # + # pysam.tar.gz + # http://url-to-some-python-package.de/pysam.tar.gz + # + dir = None + if initial_download: + filtered_actions = actions[ 1: ] + env_shell_file_paths = action_dict.get( 'env_shell_file_paths', None ) + if env_shell_file_paths is None: + log.debug( 'Missing Python environment, make sure your specified Python installation exists.' ) + if initial_download: + return tool_dependency, filtered_actions, dir + return tool_dependency, None, None + else: + install_environment.add_env_shell_file_paths( env_shell_file_paths ) + log.debug( 'Handling setup_python_environment for tool dependency %s with install_environment.env_shell_file_paths:\n%s' % \ + ( str( tool_dependency.name ), str( install_environment.env_shell_file_paths ) ) ) + dir = os.path.curdir + current_dir = os.path.abspath( os.path.join( work_dir, dir ) ) + with lcd( current_dir ): + with settings( warn_only=True ): + python_package_tups = action_dict.get( 'python_package_tups', [] ) + for python_package_tup in python_package_tups: + package, package_version = python_package_tup + package_path = os.path.join( install_environment.tool_shed_repository_install_dir, package ) + if os.path.isfile( package_path ): + # we assume a local shipped python package + + cmd = r'''PATH=$PATH:$PYTHONHOME/bin; export PATH; + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR; + easy_install --no-deps --install-dir $INSTALL_DIR --script-dir $INSTALL_DIR/bin %s + ''' % ( package_path ) + elif package.find( '://' ) != -1: + # We assume a URL to a python package. + url = package + package_name = url.split( '/' )[ -1 ] + self.url_download( work_dir, package_name, url, extract=False ) + + cmd = r'''PATH=$PATH:$PYTHONHOME/bin; export PATH; + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR; + easy_install --no-deps --install-dir $INSTALL_DIR --script-dir $INSTALL_DIR/bin %s + ''' % ( package_name ) + else: + pass + # pypi can be implemented or for > python3.4 we can use the build-in system + cmd = install_environment.build_command( basic_util.evaluate_template( cmd, install_environment ) ) + return_code = install_environment.handle_command( tool_dependency=tool_dependency, + cmd=cmd, + return_output=False ) + if return_code: + if initial_download: + return tool_dependency, filtered_actions, dir + return tool_dependency, None, None + # Pull in python dependencies (runtime). + env_file_builder.handle_action_shell_file_paths( action_dict ) + env_file_builder.append_line( name="PYTHONPATH", + action="prepend_to", + value= os.path.join( install_environment.install_dir, 'lib', 'python') ) + env_file_builder.append_line( name="PATH", + action="prepend_to", + value=os.path.join( install_environment.install_dir, 'bin' ) ) + return_code = env_file_builder.return_code + if return_code: + if initial_download: + return tool_dependency, filtered_actions, dir + return tool_dependency, None, None + if initial_download: + return tool_dependency, filtered_actions, dir + return tool_dependency, None, None + + def prepare_step( self, tool_dependency, action_elem, action_dict, install_environment, is_binary_download ): + # setup a Python environment. + # + # + # + # + # + # pysam.tar.gz + # http://url-to-some-python-package.de/pysam.tar.gz + # + # Discover all child repository dependency tags and define the path to an env.sh file + # associated with each repository. This will potentially update the value of the + # 'env_shell_file_paths' entry in action_dict. + all_env_shell_file_paths = [] + env_manager = EnvManager( self.app ) + action_dict = env_manager.get_env_shell_file_paths_from_setup_environment_elem( all_env_shell_file_paths, + action_elem, + action_dict ) + python_package_tups = [] + for env_elem in action_elem: + if env_elem.tag == 'package': + #A valid package definitions can be: + # pysam.tar.gz -> locally shipped tarball + # ftp://ftp.gruening.de/pysam.tar.gz -> online tarball + python_token = env_elem.text.strip().split( '=' ) + if len( python_token ) == 2: + # version string + package_name = python_token[ 0 ] + package_version = python_token[ 1 ] + python_package_tups.append( ( package_name, package_version ) ) + else: + # package name for pypi.org without version number + package = env_elem.text.strip() + python_package_tups.append( ( package, None ) ) + if python_package_tups: + action_dict[ 'python_package_tups' ] = python_package_tups + return action_dict + + + class SetupVirtualEnv( Download, RecipeStep ): def __init__( self, app ): diff --git a/lib/tool_shed/galaxy_install/update_repository_manager.py b/lib/tool_shed/galaxy_install/update_repository_manager.py index 7cbdf7a7ba6..5952eb54882 100644 --- a/lib/tool_shed/galaxy_install/update_repository_manager.py +++ b/lib/tool_shed/galaxy_install/update_repository_manager.py @@ -19,6 +19,7 @@ class UpdateRepositoryManager( object ): self.running = True self.sleeper = Sleeper() self.restarter = threading.Thread( target=self.__restarter ) + self.restarter.daemon = True self.restarter.start() self.seconds_to_sleep = int( app.config.hours_between_check * 3600 ) diff --git a/lib/tool_shed/grids/repository_grids.py b/lib/tool_shed/grids/repository_grids.py index 9a5296adadc..d057db038ff 100644 --- a/lib/tool_shed/grids/repository_grids.py +++ b/lib/tool_shed/grids/repository_grids.py @@ -329,6 +329,26 @@ class RepositoryGrid( grids.Grid ): .outerjoin( model.Category.table ) +class DockerImageGrid( RepositoryGrid ): + columns = [ + RepositoryGrid.NameColumn( "Name", + key="name", + link=( lambda item: dict( operation="view_or_manage_repository", id=item.id ) ), + attach_popup=False ), + RepositoryGrid.DescriptionColumn( "Synopsis", + key="description", + attach_popup=False ), + RepositoryGrid.UserColumn( "Owner", + model_class=model.User, + link=( lambda item: dict( operation="repositories_by_user", id=item.id ) ), + attach_popup=False, + key="User.username" ), + RepositoryGrid.EmailAlertsColumn( "Alert", attach_popup=False ), + ] + operations = [ grids.GridOperation( "Include in Docker image", allow_multiple=True ) ] + show_item_checkboxes = True + + class EmailAlertsRepositoryGrid( RepositoryGrid ): columns = [ RepositoryGrid.NameColumn( "Name", diff --git a/lib/tool_shed/util/basic_util.py b/lib/tool_shed/util/basic_util.py index 7d606081ecd..58dbb17e564 100644 --- a/lib/tool_shed/util/basic_util.py +++ b/lib/tool_shed/util/basic_util.py @@ -20,6 +20,33 @@ NO_OUTPUT_TIMEOUT = 1200.0 MAXDIFFSIZE = 8000 MAX_DISPLAY_SIZE = 32768 +DOCKER_IMAGE_TEMPLATE = ''' +# Galaxy Docker image + +FROM bgruening/galaxy-stable + +MAINTAINER Bjoern A. Gruning, bjoern.gruening@gmail.com + +RUN sed -i 's|brand.*|brand = deepTools|g' ~/galaxy-central/universe_wsgi.ini + +WORKDIR /galaxy-central + +${selected_repositories} + +# Mark one folder as imported from the host. +VOLUME ["/export/"] + +# Expose port 80 to the host +EXPOSE :80 + +# Autostart script that is invoked during container start +CMD ["/usr/bin/startup"] +''' + +SELECTED_REPOSITORIES_TEMPLATE = ''' +RUN service postgresql start && service apache2 start && ./run.sh --daemon && sleep 120 && python ./scripts/api/install_tool_shed_repositories.py --api admin -l http://localhost:8080 --url ${tool_shed_url} -o ${repository_owner} --name ${repository_name} --tool-deps --repository-deps --panel-section-name 'Docker' +''' + def evaluate_template( text, install_environment ): """ Substitute variables defined in XML blocks from dependencies file. The value of the received diff --git a/lib/tool_shed/util/metadata_util.py b/lib/tool_shed/util/metadata_util.py index 65f6d3f8b0a..f60b47be577 100644 --- a/lib/tool_shed/util/metadata_util.py +++ b/lib/tool_shed/util/metadata_util.py @@ -868,6 +868,20 @@ def generate_package_dependency_metadata( app, elem, valid_tool_dependencies_dic repository_elem=sub_action_elem, only_if_compiling_contained_td=True, updating_installed_repository=False ) + elif action_elem.tag == 'action': + # + # + # + # + # + for sub_action_elem in action_elem: + if sub_action_elem.tag == 'repository': + # We have a complex repository dependency. + repository_dependency_tup, repository_dependency_is_valid, error_message = \ + handle_repository_elem( app=app, + repository_elem=sub_action_elem, + only_if_compiling_contained_td=True, + updating_installed_repository=False ) if requirements_dict: dependency_key = '%s/%s' % ( package_name, package_version ) if repository_dependency_is_valid: diff --git a/scripts/set_metadata.py b/scripts/set_metadata.py index 0e550f2d645..fae6b1a84fc 100644 --- a/scripts/set_metadata.py +++ b/scripts/set_metadata.py @@ -31,16 +31,27 @@ import pkg_resources import galaxy.model.mapping # need to load this before we unpickle, in order to setup properties assigned by the mappers galaxy.model.Job() # this looks REAL stupid, but it is REQUIRED in order for SA to insert parameters into the classes defined by the mappers --> it appears that instantiating ANY mapper'ed class would suffice here from galaxy.util import stringify_dictionary_keys -from galaxy.util.json import from_json_string from sqlalchemy.orm import clear_mappers from galaxy.objectstore import build_object_store_from_config from galaxy import config import ConfigParser +def set_meta_with_tool_provided( dataset_instance, file_dict, set_meta_kwds ): + # This method is somewhat odd, in that we set the metadata attributes from tool, + # then call set_meta, then set metadata attributes from tool again. + # This is intentional due to interplay of overwrite kwd, the fact that some metadata + # parameters may rely on the values of others, and that we are accepting the + # values provided by the tool as Truth. + for metadata_name, metadata_value in file_dict.get( 'metadata', {} ).iteritems(): + setattr( dataset_instance.metadata, metadata_name, metadata_value ) + dataset_instance.datatype.set_meta( dataset_instance, **set_meta_kwds ) + for metadata_name, metadata_value in file_dict.get( 'metadata', {} ).iteritems(): + setattr( dataset_instance.metadata, metadata_name, metadata_value ) + def __main__(): file_path = sys.argv.pop( 1 ) - tmp_dir = sys.argv.pop( 1 ) + tool_job_working_directory = tmp_dir = sys.argv.pop( 1 ) #this is also the job_working_directory now galaxy.model.Dataset.file_path = file_path galaxy.datatypes.metadata.MetadataTempFile.tmp_dir = tmp_dir @@ -77,15 +88,19 @@ def __main__(): galaxy.model.set_datatypes_registry( datatypes_registry ) job_metadata = sys.argv.pop( 1 ) - ext_override = dict() + existing_job_metadata_dict = {} + new_job_metadata_dict = {} if job_metadata != "None" and os.path.exists( job_metadata ): for line in open( job_metadata, 'r' ): try: - line = stringify_dictionary_keys( from_json_string( line ) ) - assert line['type'] == 'dataset' - ext_override[line['dataset_id']] = line['ext'] + line = stringify_dictionary_keys( json.loads( line ) ) + if line['type'] == 'dataset': + existing_job_metadata_dict[ line['dataset_id'] ] = line + elif line['type'] == 'new_primary_dataset': + new_job_metadata_dict[ line[ 'filename' ] ] = line except: continue + for filenames in sys.argv[1:]: fields = filenames.split( ',' ) filename_in = fields.pop( 0 ) @@ -100,12 +115,13 @@ def __main__(): override_metadata = fields.pop( 0 ) else: override_metadata = None + set_meta_kwds = stringify_dictionary_keys( json.load( open( filename_kwds ) ) ) # load kwds; need to ensure our keywords are not unicode try: dataset = cPickle.load( open( filename_in ) ) # load DatasetInstance if dataset_filename_override: dataset.dataset.external_filename = dataset_filename_override - if ext_override.get( dataset.dataset.id, None ): - dataset.extension = ext_override[ dataset.dataset.id ] + if dataset.dataset.id in existing_job_metadata_dict: + dataset.extension = existing_job_metadata_dict[ dataset.dataset.id ].get( 'ext', dataset.extension ) # Metadata FileParameter types may not be writable on a cluster node, and are therefore temporarily substituted with MetadataTempFiles if override_metadata: override_metadata = json.load( open( override_metadata ) ) @@ -113,12 +129,27 @@ def __main__(): if galaxy.datatypes.metadata.MetadataTempFile.is_JSONified_value( metadata_file_override ): metadata_file_override = galaxy.datatypes.metadata.MetadataTempFile.from_JSON( metadata_file_override ) setattr( dataset.metadata, metadata_name, metadata_file_override ) - kwds = stringify_dictionary_keys( json.load( open( filename_kwds ) ) ) # load kwds; need to ensure our keywords are not unicode - dataset.datatype.set_meta( dataset, **kwds ) + file_dict = existing_job_metadata_dict.get( dataset.dataset.id, {} ) + set_meta_with_tool_provided( dataset, file_dict, set_meta_kwds ) dataset.metadata.to_JSON_dict( filename_out ) # write out results of set_meta json.dump( ( True, 'Metadata has been set successfully' ), open( filename_results_code, 'wb+' ) ) # setting metadata has succeeded except Exception, e: json.dump( ( False, str( e ) ), open( filename_results_code, 'wb+' ) ) # setting metadata has failed somehow + + for i, ( filename, file_dict ) in enumerate( new_job_metadata_dict.iteritems(), start=1 ): + new_dataset = galaxy.model.Dataset( id=-i, external_filename=os.path.join( tool_job_working_directory, file_dict[ 'filename' ] ) ) + extra_files = file_dict.get( 'extra_files', None ) + if extra_files is not None: + new_dataset._extra_files_path = os.path.join( tool_job_working_directory, extra_files ) + new_dataset.state = new_dataset.states.OK + new_dataset_instance = galaxy.model.HistoryDatasetAssociation( id=-i, dataset=new_dataset, extension=file_dict.get( 'ext', 'data' ) ) + set_meta_with_tool_provided( new_dataset_instance, file_dict, set_meta_kwds ) + file_dict[ 'metadata' ] = json.loads( new_dataset_instance.metadata.to_JSON_dict() ) #storing metadata in external form, need to turn back into dict, then later jsonify + if existing_job_metadata_dict or new_job_metadata_dict: + with open( job_metadata, 'wb' ) as job_metadata_fh: + for value in existing_job_metadata_dict.values() + new_job_metadata_dict.values(): + job_metadata_fh.write( "%s\n" % ( json.dumps( value ) ) ) + clear_mappers() # Shut down any additional threads that might have been created via the ObjectStore object_store.shutdown() diff --git a/static/scripts/galaxy.workflow_editor.canvas.js b/static/scripts/galaxy.workflow_editor.canvas.js index 351d56cbc1c..e32b98327da 100644 --- a/static/scripts/galaxy.workflow_editor.canvas.js +++ b/static/scripts/galaxy.workflow_editor.canvas.js @@ -306,7 +306,7 @@ var BaseInputTerminal = Terminal.extend( { inputFilled = false; } else { var firstOutput = this.connectors[ 0 ].handle1; - if( firstOutput === null ){ + if( ! firstOutput ){ inputFilled = false; } else { if( firstOutput.isDataCollectionInput || firstOutput.isMappedOver() || firstOutput.datatypes.indexOf( "input_collection" ) > 0 ) { diff --git a/static/scripts/mvc/collection/dataset-collection-base.js b/static/scripts/mvc/collection/dataset-collection-base.js index b534456183c..26acc5986ce 100644 --- a/static/scripts/mvc/collection/dataset-collection-base.js +++ b/static/scripts/mvc/collection/dataset-collection-base.js @@ -1,7 +1,7 @@ define([ - "mvc/dataset/hda-model", - "mvc/dataset/hda-base" -], function( hdaModel, hdaBase ){ + "mvc/history/history-content-base-view", + "utils/localization" +], function( historyContentBaseView, _l ){ /* global Backbone, LoggableMixin */ //============================================================================== /** @class Read only view for HistoryDatasetCollectionAssociation. @@ -12,10 +12,11 @@ define([ * @borrows LoggableMixin#log as #log * @constructs */ -var DatasetCollectionBaseView = hdaBase.HistoryContentBaseView.extend({ +var DatasetCollectionBaseView = historyContentBaseView.HistoryContentBaseView.extend({ className : "dataset hda history-panel-hda", id : function(){ return 'hdca-' + this.model.get( 'id' ); }, + /** */ initialize : function( attributes ){ if( attributes.logger ){ this.logger = this.model.logger = attributes.logger; } this.log( this + '.initialize:', attributes ); @@ -28,6 +29,7 @@ var DatasetCollectionBaseView = hdaBase.HistoryContentBaseView.extend({ this.expanded = attributes.expanded || false; }, + /** */ render : function( fade ){ var $newRender = this._buildNewRender(); @@ -35,53 +37,47 @@ var DatasetCollectionBaseView = hdaBase.HistoryContentBaseView.extend({ return this; }, - // main template for folder browsing - templateSkeleton : function (){ - return [ - '
    ', - '
    ', - '<% if ( deleted ) { %>', - '
    ', - _l( 'This dataset has been deleted.' ), - '
    ', - '<% } %>', - '<% if ( ! visible ) { %>', - '
    ', - _l( 'This dataset has been hidden.' ), - '
    ', - '<% } %>', - '
    ', - '
    ', - '
    ', - '
    ', - '', - '
    ', - '<%= hid %> ', - '<%= name %>', - '
    ', - '
    ', - '
    ', - '
    ' - ].join( '' ); - }, - - templateBody : function() { - return [ - '
    ', - '
    ', - 'A dataset collection.', - '
    ' - ].join( '' ); - }, - + /** */ _buildNewRender : function(){ - var $newRender = $( _.template(this.templateSkeleton(), this.model.toJSON() ) ); + var $newRender = $( DatasetCollectionBaseView.templates.skeleton( this.model.toJSON() ) ); $newRender.find( '.dataset-primary-actions' ).append( this._render_titleButtons() ); $newRender.children( '.dataset-body' ).replaceWith( this._render_body() ); this._setUpBehaviors( $newRender ); return $newRender; }, + /** */ + _queueNewRender : function( $newRender, fade ) { + fade = ( fade === undefined )?( true ):( fade ); + var view = this; + + // fade the old render out (if desired) + if( fade ){ + $( view ).queue( function( next ){ this.$el.fadeOut( view.fxSpeed, next ); }); + } + // empty the old render, update to any new HDA state, swap in the new render contents, handle multi-select + $( view ).queue( function( next ){ + this.$el.empty() + .attr( 'class', view.className ).addClass( 'state-' + view.model.get( 'state' ) ) + .append( $newRender.children() ); + if( this.selectable ){ this.showSelector( 0 ); } + next(); + }); + // fade the new in + if( fade ){ + $( view ).queue( function( next ){ this.$el.fadeIn( view.fxSpeed, next ); }); + } + // trigger an event to know we're ready + $( view ).queue( function( next ){ + this.trigger( 'rendered', view ); + if( this.model.inReadyState() ){ + this.trigger( 'rendered:ready', view ); + } + if( this.draggable ){ this.draggableOn(); } + next(); + }); + }, + // ................................................................................ titlebar buttons /** Render icon-button group for the common, most easily accessed actions. * @returns {jQuery} rendered DOM @@ -134,6 +130,31 @@ var DatasetCollectionBaseView = hdaBase.HistoryContentBaseView.extend({ 'click .dataset-selector' : 'toggleSelect' }, + /** Show or hide the body/details of history content. + * note: if the model does not have detailed data, fetch that data before showing the body + * @param {Event} event the event that triggered this (@link HDABaseView#events) + * @param {Boolean} expanded if true, expand; if false, collapse + * @fires body-expanded when a body has been expanded + * @fires body-collapsed when a body has been collapsed + */ + toggleBodyVisibility : function( event, expand ){ + // bail (with propagation) if keydown and not space or enter + var KEYCODE_SPACE = 32, KEYCODE_RETURN = 13; + if( event && ( event.type === 'keydown' ) + && !( event.keyCode === KEYCODE_SPACE || event.keyCode === KEYCODE_RETURN ) ){ + return true; + } + + var $body = this.$el.find( '.dataset-body' ); + expand = ( expand === undefined )?( !$body.is( ':visible' ) ):( expand ); + if( expand ){ + this.expandBody(); + } else { + this.collapseBody(); + } + return false; + }, + /** Render and show the full, detailed body of this view including extra data and controls. * @fires body-expanded when a body has been expanded */ @@ -162,13 +183,12 @@ var DatasetCollectionBaseView = hdaBase.HistoryContentBaseView.extend({ }); }, - /** Render an 'ok' collection. * @param {jQuery} parent DOM to which to append this body */ _render_body_ok : function(){ // most common state renderer and the most complicated - var $body = $( _.template( this.templateBody(), this.model.toJSON() ) ); + var $body = $( DatasetCollectionBaseView.templates.body( this.model.toJSON() ) ); // return shortened form if del'd (no display apps or peek?) if( this.model.get( 'deleted' ) ){ @@ -176,13 +196,133 @@ var DatasetCollectionBaseView = hdaBase.HistoryContentBaseView.extend({ } return $body; - } + }, + // ......................................................................... selection + /** display a (fa-icon) checkbox on the left of the hda that fires events when checked + * Note: this also hides the primary actions + */ + showSelector : function(){ + // make sure selected state is represented properly + if( this.selected ){ + this.select( null, true ); + } + + this.selectable = true; + this.trigger( 'selectable', true, this ); + + this.$( '.dataset-primary-actions' ).hide(); + this.$( '.dataset-selector' ).show(); + }, + + /** remove the selection checkbox */ + hideSelector : function(){ + // reverse the process from showSelect + this.selectable = false; + this.trigger( 'selectable', false, this ); + + this.$( '.dataset-selector' ).hide(); + this.$( '.dataset-primary-actions' ).show(); + }, + + toggleSelector : function(){ + if( !this.$el.find( '.dataset-selector' ).is( ':visible' ) ){ + this.showSelector(); + } else { + this.hideSelector(); + } + }, + + /** event handler for selection (also programmatic selection) + */ + select : function( event ){ + // switch icon, set selected, and trigger event + this.$el.find( '.dataset-selector span' ) + .removeClass( 'fa-square-o' ).addClass( 'fa-check-square-o' ); + if( !this.selected ){ + this.trigger( 'selected', this, event ); + this.selected = true; + } + return false; + }, + + /** event handler for clearing selection (also programmatic deselection) + */ + deselect : function( event ){ + // switch icon, set selected, and trigger event + this.$el.find( '.dataset-selector span' ) + .removeClass( 'fa-check-square-o' ).addClass( 'fa-square-o' ); + if( this.selected ){ + this.trigger( 'de-selected', this, event ); + this.selected = false; + } + return false; + }, + + toggleSelect : function( event ){ + if( this.selected ){ + this.deselect( event ); + } else { + this.select( event ); + } + }, + + // ......................................................................... misc + /** String representation */ + toString : function(){ + var modelString = ( this.model )?( this.model + '' ):( '(no model)' ); + return 'HDCABaseView(' + modelString + ')'; + } }); -//============================================================================== -return { - DatasetCollectionBaseView : DatasetCollectionBaseView +//------------------------------------------------------------------------------ TEMPLATES +//TODO: possibly break these out into a sep. module +var skeletonTemplate = _.template([ + '
    ', + '
    ', + '<% if ( collection.deleted ) { %>', + '
    ', + _l( 'This collection has been deleted.' ), + '
    ', + '<% } %>', + '<% if ( !collection.visible ) { %>', + '
    ', + _l( 'This collection has been hidden.' ), + '
    ', + '<% } %>', + '
    ', + '
    ', + '
    ', + '
    ', + '', + '
    ', + '<%= collection.hid %> ', + '<%= collection.name %>', + '
    ', + '
    ', + '
    ', + '
    ' +].join( '' )); + +var bodyTemplate = _.template([ + '
    ', + '
    ', + _l( 'A dataset collection.' ), + '
    ' +].join( '' )); + +DatasetCollectionBaseView.templates = { + // we override here in order to pass the localizer (_L) into the template scope - since we use it as a fn within + skeleton : function( collectionJSON ){ + return skeletonTemplate({ _l: _l, collection: collectionJSON }); + }, + body : function( collectionJSON ){ + return bodyTemplate({ _l: _l, collection: collectionJSON }); + } }; +//============================================================================== + return { + DatasetCollectionBaseView : DatasetCollectionBaseView + }; }); diff --git a/static/scripts/mvc/collection/dataset-collection-edit.js b/static/scripts/mvc/collection/dataset-collection-edit.js index 6619acbf0e7..c8d39cf1d25 100644 --- a/static/scripts/mvc/collection/dataset-collection-edit.js +++ b/static/scripts/mvc/collection/dataset-collection-edit.js @@ -1,7 +1,8 @@ define([ "mvc/dataset/hda-model", "mvc/collection/dataset-collection-base", -], function( hdaModel, datasetCollectionBase ){ + "utils/localization" +], function( hdaModel, datasetCollectionBase, _l ){ //============================================================================== /** @class Editing view for HistoryDatasetCollectionAssociation. * @name DatasetCollectionEditView @@ -57,13 +58,18 @@ var DatasetCollectionEditView = datasetCollectionBase.DatasetCollectionBaseView. } deleteBtnData.faIcon = 'fa-times'; return faIconButton( deleteBtnData ); - } + }, + // ......................................................................... misc + /** string rep */ + toString : function(){ + var modelString = ( this.model )?( this.model + '' ):( '(no model)' ); + return 'HDCAEditView(' + modelString + ')'; + } }); //============================================================================== -return { - DatasetCollectionEditView : DatasetCollectionEditView -}; - + return { + DatasetCollectionEditView : DatasetCollectionEditView + }; }); diff --git a/static/scripts/mvc/collection/hdca-model.js b/static/scripts/mvc/collection/hdca-model.js new file mode 100644 index 00000000000..b0097bfa399 --- /dev/null +++ b/static/scripts/mvc/collection/hdca-model.js @@ -0,0 +1,69 @@ +define([ + "mvc/history/history-content-base", + "utils/localization" +], function( historyContent, _l ){ +//============================================================================== +var HistoryDatasetCollectionAssociation = historyContent.HistoryContent.extend( +/** @lends HistoryDatasetCollectionAssociation.prototype */{ + /** default attributes for a model */ + defaults : { + // parent (containing) history + history_id : null, + // often used with tagging + model_class : 'HistoryDatasetCollectionAssociation', + history_content_type : 'dataset_collection', + hid : 0, + + id : null, + name : '(unnamed dataset collection)', + // one of HistoryDatasetAssociation.STATES, calling them all 'ok' for now. + state : 'ok', + + accessible : true, + deleted : false, + visible : true, + + purged : false, // Purged doesn't make sense for collections - at least right now. + + tags : [], + annotation : '' + }, + urls : function(){ + }, + + inReadyState : function(){ + return true; // TODO + }, + + // ........................................................................ search + /** what attributes of an collection will be used in a text search */ + searchAttributes : [ + 'name' + ], + + /** our attr keys don't often match the labels we display to the user - so, when using + * attribute specifiers ('name="bler"') in a term, allow passing in aliases for the + * following attr keys. + */ + searchAliases : { + title : 'name' + // TODO: Add tag... + }, + + // ........................................................................ misc + /** String representation */ + toString : function(){ + var nameAndId = this.get( 'id' ) || ''; + if( this.get( 'name' ) ){ + nameAndId = this.get( 'hid' ) + ' :"' + this.get( 'name' ) + '",' + nameAndId; + } + return 'HDCA-' + this.get( 'collection_type' ) + '(' + nameAndId + ')'; + } +}); + + +//============================================================================== + return { + HistoryDatasetCollectionAssociation : HistoryDatasetCollectionAssociation + }; +}); diff --git a/static/scripts/mvc/dataset/hda-base.js b/static/scripts/mvc/dataset/hda-base.js index c8d45a98524..477fbf74028 100644 --- a/static/scripts/mvc/dataset/hda-base.js +++ b/static/scripts/mvc/dataset/hda-base.js @@ -1,152 +1,10 @@ define([ "mvc/dataset/hda-model", - "mvc/base-mvc", + "mvc/history/history-content-base-view", "mvc/data", "utils/localization" -], function( hdaModel, baseMVC, dataset, _l ){ +], function( hdaModel, historyContentBaseView, dataset, _l ){ /* global Backbone */ - -/** @class Read only view for history content views to extend. - * @name HistoryContentBaseView - * - * @augments Backbone.View - * @borrows LoggableMixin#logger as #logger - * @borrows LoggableMixin#log as #log - * @constructs - */ -var HistoryContentBaseView = Backbone.View.extend( baseMVC.LoggableMixin ).extend( -/** @lends HistoryContentBaseView.prototype */{ - tagName : "div", - fxSpeed : 'fast', - - _queueNewRender : function( $newRender, fade ) { - fade = ( fade === undefined )?( true ):( fade ); - var view = this; - - // fade the old render out (if desired) - if( fade ){ - $( view ).queue( function( next ){ this.$el.fadeOut( view.fxSpeed, next ); }); - } - // empty the old render, update to any new HDA state, swap in the new render contents, handle multi-select - $( view ).queue( function( next ){ - this.$el.empty() - .attr( 'class', view.className ).addClass( 'state-' + view.model.get( 'state' ) ) - .append( $newRender.children() ); - if( this.selectable ){ this.showSelector( 0 ); } - next(); - }); - // fade the new in - if( fade ){ - $( view ).queue( function( next ){ this.$el.fadeIn( view.fxSpeed, next ); }); - } - // trigger an event to know we're ready - $( view ).queue( function( next ){ - this.trigger( 'rendered', view ); - if( this.model.inReadyState() ){ - this.trigger( 'rendered:ready', view ); - } - if( this.draggable ){ this.draggableOn(); } - next(); - }); - }, - - /** Show or hide the body/details of history content. - * note: if the model does not have detailed data, fetch that data before showing the body - * @param {Event} event the event that triggered this (@link HDABaseView#events) - * @param {Boolean} expanded if true, expand; if false, collapse - * @fires body-expanded when a body has been expanded - * @fires body-collapsed when a body has been collapsed - */ - toggleBodyVisibility : function( event, expand ){ - // bail (with propagation) if keydown and not space or enter - var KEYCODE_SPACE = 32, KEYCODE_RETURN = 13; - if( event && ( event.type === 'keydown' ) - && !( event.keyCode === KEYCODE_SPACE || event.keyCode === KEYCODE_RETURN ) ){ - return true; - } - - var $body = this.$el.find( '.dataset-body' ); - expand = ( expand === undefined )?( !$body.is( ':visible' ) ):( expand ); - if( expand ){ - this.expandBody(); - } else { - this.collapseBody(); - } - return false; - }, - - // ......................................................................... selection - /** display a (fa-icon) checkbox on the left of the hda that fires events when checked - * Note: this also hides the primary actions - */ - showSelector : function(){ - // make sure selected state is represented properly - if( this.selected ){ - this.select( null, true ); - } - - this.selectable = true; - this.trigger( 'selectable', true, this ); - - this.$( '.dataset-primary-actions' ).hide(); - this.$( '.dataset-selector' ).show(); - }, - - /** remove the selection checkbox */ - hideSelector : function(){ - // reverse the process from showSelect - this.selectable = false; - this.trigger( 'selectable', false, this ); - - this.$( '.dataset-selector' ).hide(); - this.$( '.dataset-primary-actions' ).show(); - }, - - toggleSelector : function(){ - if( !this.$el.find( '.dataset-selector' ).is( ':visible' ) ){ - this.showSelector(); - } else { - this.hideSelector(); - } - }, - - /** event handler for selection (also programmatic selection) - */ - select : function( event ){ - // switch icon, set selected, and trigger event - this.$el.find( '.dataset-selector span' ) - .removeClass( 'fa-square-o' ).addClass( 'fa-check-square-o' ); - if( !this.selected ){ - this.trigger( 'selected', this, event ); - this.selected = true; - } - return false; - }, - - /** event handler for clearing selection (also programmatic deselection) - */ - deselect : function( event ){ - // switch icon, set selected, and trigger event - this.$el.find( '.dataset-selector span' ) - .removeClass( 'fa-check-square-o' ).addClass( 'fa-square-o' ); - if( this.selected ){ - this.trigger( 'de-selected', this, event ); - this.selected = false; - } - return false; - }, - - toggleSelect : function( event ){ - if( this.selected ){ - this.deselect( event ); - } else { - this.select( event ); - } - } - -}); - - //============================================================================== /** @class Read only view for HistoryDatasetAssociation. * @name HDABaseView @@ -156,16 +14,19 @@ var HistoryContentBaseView = Backbone.View.extend( baseMVC.LoggableMixin ).exten * @borrows LoggableMixin#log as #log * @constructs */ -var HDABaseView = HistoryContentBaseView.extend( +var HDABaseView = historyContentBaseView.HistoryContentBaseView.extend( /** @lends HDABaseView.prototype */{ ///** logger used to record this.log messages, commonly set to console */ //// comment this out to suppress log output //logger : console, + tagName : "div", className : "dataset hda history-panel-hda", id : function(){ return 'hda-' + this.model.get( 'id' ); }, + fxSpeed : 'fast', + // ......................................................................... set up /** Set up the view, cache url templates, bind listeners * @param {Object} attributes @@ -253,6 +114,37 @@ var HDABaseView = HistoryContentBaseView.extend( return $newRender; }, + _queueNewRender : function( $newRender, fade ) { + fade = ( fade === undefined )?( true ):( fade ); + var view = this; + + // fade the old render out (if desired) + if( fade ){ + $( view ).queue( function( next ){ this.$el.fadeOut( view.fxSpeed, next ); }); + } + // empty the old render, update to any new HDA state, swap in the new render contents, handle multi-select + $( view ).queue( function( next ){ + this.$el.empty() + .attr( 'class', view.className ).addClass( 'state-' + view.model.get( 'state' ) ) + .append( $newRender.children() ); + if( this.selectable ){ this.showSelector( 0 ); } + next(); + }); + // fade the new in + if( fade ){ + $( view ).queue( function( next ){ this.$el.fadeIn( view.fxSpeed, next ); }); + } + // trigger an event to know we're ready + $( view ).queue( function( next ){ + this.trigger( 'rendered', view ); + if( this.model.inReadyState() ){ + this.trigger( 'rendered:ready', view ); + } + if( this.draggable ){ this.draggableOn(); } + next(); + }); + }, + /** set up js behaviors, event handlers for elements within the given container * @param {jQuery} $container jq object that contains the elements to process (defaults to this.$el) */ @@ -316,11 +208,11 @@ var HDABaseView = HistoryContentBaseView.extend( if( Galaxy.frame && Galaxy.frame.active ){ // Create frame with TabularChunkedView. Galaxy.frame.add({ - title : "Data Viewer: " + self.model.get('name'), + title : "Data Viewer: " + self.model.get( 'name' ), type : "other", - content : function(parent_elt) { - var new_dataset = new dataset.TabularDataset({id: self.model.get('id')}); - $.when(new_dataset.fetch()).then(function() { + content : function( parent_elt ){ + var new_dataset = new dataset.TabularDataset({ id: self.model.get( 'id' ) }); + $.when( new_dataset.fetch() ).then( function(){ dataset.createTabularDatasetChunkedView({ model: new_dataset, parent_elt: parent_elt, @@ -558,6 +450,31 @@ var HDABaseView = HistoryContentBaseView.extend( 'click .dataset-selector' : 'toggleSelect' }, + /** Show or hide the body/details of history content. + * note: if the model does not have detailed data, fetch that data before showing the body + * @param {Event} event the event that triggered this (@link HDABaseView#events) + * @param {Boolean} expanded if true, expand; if false, collapse + * @fires body-expanded when a body has been expanded + * @fires body-collapsed when a body has been collapsed + */ + toggleBodyVisibility : function( event, expand ){ + // bail (with propagation) if keydown and not space or enter + var KEYCODE_SPACE = 32, KEYCODE_RETURN = 13; + if( event && ( event.type === 'keydown' ) + && !( event.keyCode === KEYCODE_SPACE || event.keyCode === KEYCODE_RETURN ) ){ + return true; + } + + var $body = this.$el.find( '.dataset-body' ); + expand = ( expand === undefined )?( !$body.is( ':visible' ) ):( expand ); + if( expand ){ + this.expandBody(); + } else { + this.collapseBody(); + } + return false; + }, + /** Render and show the full, detailed body of this view including extra data and controls. * @fires body-expanded when a body has been expanded */ @@ -599,6 +516,75 @@ var HDABaseView = HistoryContentBaseView.extend( }); }, + // ......................................................................... selection + /** display a (fa-icon) checkbox on the left of the hda that fires events when checked + * Note: this also hides the primary actions + */ + showSelector : function(){ + // make sure selected state is represented properly + if( this.selected ){ + this.select( null, true ); + } + + this.selectable = true; + this.trigger( 'selectable', true, this ); + + this.$( '.dataset-primary-actions' ).hide(); + this.$( '.dataset-selector' ).show(); + }, + + /** remove the selection checkbox */ + hideSelector : function(){ + // reverse the process from showSelect + this.selectable = false; + this.trigger( 'selectable', false, this ); + + this.$( '.dataset-selector' ).hide(); + this.$( '.dataset-primary-actions' ).show(); + }, + + toggleSelector : function(){ + if( !this.$el.find( '.dataset-selector' ).is( ':visible' ) ){ + this.showSelector(); + } else { + this.hideSelector(); + } + }, + + /** event handler for selection (also programmatic selection) + */ + select : function( event ){ + // switch icon, set selected, and trigger event + this.$el.find( '.dataset-selector span' ) + .removeClass( 'fa-square-o' ).addClass( 'fa-check-square-o' ); + if( !this.selected ){ + this.trigger( 'selected', this, event ); + this.selected = true; + } + return false; + }, + + /** event handler for clearing selection (also programmatic deselection) + */ + deselect : function( event ){ + // switch icon, set selected, and trigger event + this.$el.find( '.dataset-selector span' ) + .removeClass( 'fa-check-square-o' ).addClass( 'fa-square-o' ); + if( this.selected ){ + this.trigger( 'de-selected', this, event ); + this.selected = false; + } + return false; + }, + + toggleSelect : function( event ){ + if( this.selected ){ + this.deselect( event ); + } else { + this.select( event ); + } + }, + // ......................................................................... drag/drop draggableOn : function(){ this.draggable = true; @@ -824,7 +810,7 @@ HDABaseView.templates = { }; //============================================================================== -return { - HistoryContentBaseView : HistoryContentBaseView, - HDABaseView : HDABaseView -};}); + return { + HDABaseView : HDABaseView + }; +}); diff --git a/static/scripts/mvc/dataset/hda-edit.js b/static/scripts/mvc/dataset/hda-edit.js index a7dcb1d22a6..c24bb9803b6 100644 --- a/static/scripts/mvc/dataset/hda-edit.js +++ b/static/scripts/mvc/dataset/hda-edit.js @@ -423,7 +423,7 @@ var HDAEditView = hdaBase.HDABaseView.extend( /** string rep */ toString : function(){ var modelString = ( this.model )?( this.model + '' ):( '(no model)' ); - return 'HDAView(' + modelString + ')'; + return 'HDAEditView(' + modelString + ')'; } }); @@ -510,6 +510,7 @@ var HDAEditView = hdaBase.HDABaseView.extend( //============================================================================== -return { - HDAEditView : HDAEditView -};}); + return { + HDAEditView : HDAEditView + }; +}); diff --git a/static/scripts/mvc/dataset/hda-model.js b/static/scripts/mvc/dataset/hda-model.js index c491f010788..bc9b351ecd8 100644 --- a/static/scripts/mvc/dataset/hda-model.js +++ b/static/scripts/mvc/dataset/hda-model.js @@ -1,169 +1,7 @@ define([ - "mvc/base-mvc", + "mvc/history/history-content-base", "utils/localization" -], function( baseMVC, _l ){ -//============================================================================== -/** @class model for contents related to a history. - * @name HistoryContent - * - * @augments Backbone.Model - * @borrows LoggableMixin#logger as #logger - * @borrows LoggableMixin#log as #log - * @constructs - */ -var HistoryContent = Backbone.Model.extend( baseMVC.LoggableMixin ).extend( { - idAttribute : 'type_id', - - /** fetch location of this HDA's history in the api */ - urlRoot: galaxy_config.root + 'api/histories/', - - constructor : function( attrs, options ){ - attrs.type_id = HistoryContent.typeIdStr( attrs.history_content_type, attrs.id ); - Backbone.Model.apply( this, arguments ); - }, - - initialize : function( attrs, options ){ - // assumes type won't change - this.on( 'change:id', this._createTypeId ); - //TODO: not sure this covers all the bases... - }, - - /** full url spec. for this HDA */ - url : function(){ - return this.urlRoot + this.get( 'history_id' ) + '/contents/' + this.get('history_content_type') + 's/' + this.get( 'id' ); - }, - - /** the more common alias of visible */ - hidden : function(){ - return !this.get( 'visible' ); - }, - - // ........................................................................ ajax - - /** save this HDA, _Mark_ing it as deleted (just a flag) */ - 'delete' : function _delete( options ){ - if( this.get( 'deleted' ) ){ return jQuery.when(); } - return this.save( { deleted: true }, options ); - }, - /** save this HDA, _Mark_ing it as undeleted */ - undelete : function _undelete( options ){ - if( !this.get( 'deleted' ) || this.get( 'purged' ) ){ return jQuery.when(); } - return this.save( { deleted: false }, options ); - }, - - /** save this HDA as not visible */ - hide : function _hide( options ){ - if( !this.get( 'visible' ) ){ return jQuery.when(); } - return this.save( { visible: false }, options ); - }, - /** save this HDA as visible */ - unhide : function _uhide( options ){ - if( this.get( 'visible' ) ){ return jQuery.when(); } - return this.save( { visible: true }, options ); - }, - - /** based on show_deleted, show_hidden (gen. from the container control), - * would this ds show in the list of ds's? - * @param {Boolean} show_deleted are we showing deleted hdas? - * @param {Boolean} show_hidden are we showing hidden hdas? - */ - isVisible : function( show_deleted, show_hidden ){ - var isVisible = true; - if( ( !show_deleted ) - && ( this.get( 'deleted' ) || this.get( 'purged' ) ) ){ - isVisible = false; - } - if( ( !show_hidden ) - && ( !this.get( 'visible' ) ) ){ - isVisible = false; - } - return isVisible; - }, - - /** search the attribute with key attrKey for the string searchFor; T/F if found */ - searchAttribute : function( attrKey, searchFor ){ - var attrVal = this.get( attrKey ); - //console.debug( 'searchAttribute', attrKey, attrVal, searchFor ); - // bail if empty searchFor or unsearchable values - if( !searchFor - || ( attrVal === undefined || attrVal === null ) ){ - return false; - } - // pass to sep. fn for deep search of array attributes - if( _.isArray( attrVal ) ){ return this._searchArrayAttribute( attrVal, searchFor ); } - return ( attrVal.toString().toLowerCase().indexOf( searchFor.toLowerCase() ) !== -1 ); - }, - - /** deep(er) search for array attributes; T/F if found */ - _searchArrayAttribute : function( array, searchFor ){ - //console.debug( '_searchArrayAttribute', array, searchFor ); - searchFor = searchFor.toLowerCase(); - //precondition: searchFor has already been validated as non-empty string - //precondition: assumes only 1 level array - //TODO: could possibly break up searchFor more (CSV...) - return _.any( array, function( elem ){ - return ( elem.toString().toLowerCase().indexOf( searchFor.toLowerCase() ) !== -1 ); - }); - }, - - /** search all searchAttributes for the string searchFor, - * returning a list of keys of attributes that contain searchFor - */ - search : function( searchFor ){ - var model = this; - return _.filter( this.searchAttributes, function( key ){ - return model.searchAttribute( key, searchFor ); - }); - }, - - /** alias of search, but returns a boolean; accepts attribute specifiers where - * the attributes searched can be narrowed to a single attribute using - * the form: matches( 'genome_build=hg19' ) - * (the attribute keys allowed can also be aliases to the true attribute key; - * see searchAliases above) - * @param {String} term plain text or ATTR_SPECIFIER sep. key=val pair - * @returns {Boolean} was term found in (any) attribute(s) - */ - matches : function( term ){ - var ATTR_SPECIFIER = '=', - split = term.split( ATTR_SPECIFIER ); - // attribute is specified - search only that - if( split.length >= 2 ){ - var attrKey = split[0]; - attrKey = this.searchAliases[ attrKey ] || attrKey; - return this.searchAttribute( attrKey, split[1] ); - } - // no attribute is specified - search all attributes in searchAttributes - return !!this.search( term ).length; - }, - - /** an implicit AND search for all terms; IOW, an hda must match all terms given - * where terms is a whitespace separated value string. - * e.g. given terms of: 'blah bler database=hg19' - * an HDA would have to have attributes containing blah AND bler AND a genome_build == hg19 - * To include whitespace in terms: wrap the term in double quotations. - */ - matchesAll : function( terms ){ - var model = this; - // break the terms up by whitespace and filter out the empty strings - terms = terms.match( /(".*"|\w*=".*"|\S*)/g ).filter( function( s ){ return !!s; }); - return _.all( terms, function( term ){ - term = term.replace( /"/g, '' ); - return model.matches( term ); - }); - }, - - _createTypeId : function(){ - this.set( 'type_id', TypeIdModel.typeIdStr( this.get( 'history_content_type' ), this.get( 'id' ) ) ); - }, - -} ); - -/** create a type + id string for use in mixed collections */ -HistoryContent.typeIdStr = function _typeId( type, id ){ - return [ type, id ].join( '-' ); -}; - +], function( historyContent, _l ){ //============================================================================== /** @class (HDA) model for a Galaxy dataset * related to a history. @@ -174,7 +12,7 @@ HistoryContent.typeIdStr = function _typeId( type, id ){ * @borrows LoggableMixin#log as #log * @constructs */ -var HistoryDatasetAssociation = HistoryContent.extend( +var HistoryDatasetAssociation = historyContent.HistoryContent.extend( /** @lends HistoryDatasetAssociation.prototype */{ ///** logger used to record this.log messages, commonly set to console */ @@ -456,326 +294,9 @@ HistoryDatasetAssociation.NOT_READY_STATES = [ HistoryDatasetAssociation.STATES.NEW ]; -//============================================================================== -/** @class Backbone collection of (HDA) models - * TODO: Rename HistoryContentCollection - * - * @borrows LoggableMixin#logger as #logger - * @borrows LoggableMixin#log as #log - * @constructs - */ -var HDACollection = Backbone.Collection.extend( baseMVC.LoggableMixin ).extend( -/** @lends HDACollection.prototype */{ - model : function( attrs, options ) { - if( attrs.history_content_type == "dataset" ) { - return new HistoryDatasetAssociation( attrs, options ); - } else if( attrs.history_content_type == "dataset_collection" ) { - return new HistoryDatasetCollectionAssociation( attrs, options ); - } else { - // TODO: Handle unknown history_content_type... - } - }, - - ///** logger used to record this.log messages, commonly set to console */ - //// comment this out to suppress log output - //logger : console, - - /** root api url */ - urlRoot : galaxy_config.root + 'api/histories', - /** complete api url */ - url : function(){ - return this.urlRoot + '/' + this.historyId + '/contents'; - }, - - /** Set up. - * @see Backbone.Collection#initialize - */ - initialize : function( models, options ){ - options = options || {}; - this.historyId = options.historyId; - //this._setUpListeners(); - }, - - //_setUpListeners : function(){ - //}, - - // ........................................................................ common queries - /** Get the ids of every hda in this collection - * @returns array of encoded ids - */ - ids : function(){ - return this.map( function( hda ){ return hda.get('id'); }); - }, - - /** Get hdas that are not ready - * @returns array of HDAs - */ - notReady : function(){ - return this.filter( function( hda ){ - return !hda.inReadyState(); - }); - }, - - /** Get the id of every hda in this collection not in a 'ready' state (running). - * @returns an array of hda ids - * @see HistoryDatasetAssociation#inReadyState - */ - running : function(){ - var idList = []; - this.each( function( item ){ - if( !item.inReadyState() ){ - idList.push( item.get( 'id' ) ); - } - }); - return idList; - }, - - /** Get the hda with the given hid - * @param {Int} hid the hid to search for - * @returns {HistoryDatasetAssociation} the hda with the given hid or undefined if not found - */ - getByHid : function( hid ){ - return _.first( this.filter( function( hda ){ return hda.get( 'hid' ) === hid; }) ); - }, - - /** Get every 'shown' hda in this collection based on show_deleted/hidden - * @param {Boolean} show_deleted are we showing deleted hdas? - * @param {Boolean} show_hidden are we showing hidden hdas? - * @returns array of hda models - * @see HistoryDatasetAssociation#isVisible - */ - getVisible : function( show_deleted, show_hidden, filters ){ - filters = filters || []; - //console.debug( 'filters:', filters ); - //TODO:?? why doesn't this return a collection? - // always filter by show deleted/hidden first - var filteredHdas = new HDACollection( this.filter( function( item ){ - return item.isVisible( show_deleted, show_hidden ); - })); - - _.each( filters, function( filter_fn ){ - if( !_.isFunction( filter_fn ) ){ return; } - filteredHdas = new HDACollection( filteredHdas.filter( filter_fn ) ); - }); - //if( filteredHdas.length ){ - // console.debug( 'filteredHdas:' ); - // filteredHdas.each( function( hda ){ - // console.debug( '\t', hda ); - // }); - //} else { - // console.warn( 'no visible hdas' ); - //} - return filteredHdas; - }, - - /** return true if any hdas don't have details */ - haveDetails : function(){ - return this.all( function( hda ){ return hda.hasDetails(); }); - }, - - // ........................................................................ ajax - /** fetch detailed model data for all HDAs in this collection */ - fetchAllDetails : function( options ){ - options = options || {}; - var detailsFlag = { details: 'all' }; - options.data = ( options.data )?( _.extend( options.data, detailsFlag ) ):( detailsFlag ); - return this.fetch( options ); - }, - - /** using a queue, perform hdaModelAjaxFn on each of the hdas in this collection */ - ajaxQueue : function( hdaAjaxFn, options ){ - var deferred = jQuery.Deferred(), - startingLength = this.length, - responses = []; - - if( !startingLength ){ - deferred.resolve([]); - return deferred; - } - - // use reverse order (stylistic choice) - var ajaxFns = this.chain().reverse().map( function( hda, i ){ - return function(){ - var xhr = hdaAjaxFn.call( hda, options ); - // if successful, notify using the deferred to allow tracking progress - xhr.done( function( response ){ - deferred.notify({ curr: i, total: startingLength, response: response, model: hda }); - }); - // (regardless of previous error or success) if not last ajax call, shift and call the next - // if last fn, resolve deferred - xhr.always( function( response ){ - responses.push( response ); - if( ajaxFns.length ){ - ajaxFns.shift()(); - } else { - deferred.resolve( responses ); - } - }); - }; - }).value(); - // start the queue - ajaxFns.shift()(); - - return deferred; - }, - - // ........................................................................ sorting/filtering - /** return a new collection of HDAs whose attributes contain the substring matchesWhat */ - matches : function( matchesWhat ){ - return this.filter( function( hda ){ - return hda.matches( matchesWhat ); - }); - }, - - // ........................................................................ misc - set : function( models, options ){ - // arrrrrrrrrrrrrrrrrg... - // override to get a correct/smarter merge when incoming data is partial (e.g. stupid backbone) - // w/o this partial models from the server will fill in missing data with model defaults - // and overwrite existing data on the client - // see Backbone.Collection.set and _prepareModel - var collection = this; - models = _.map( models, function( model ){ - var attrs = model.attributes || model; // Handle raw json or Backbone model. - var typeId = HistoryContent.typeIdStr( attrs.history_content_type, attrs.id ); - var existing = collection.get( typeId ); - if( !existing ){ return model; } - - // merge the models _BEFORE_ calling the superclass version - var merged = existing.toJSON(); - _.extend( merged, model ); - return merged; - }); - // now call superclass when the data is filled - Backbone.Collection.prototype.set.call( this, models, options ); - }, - - /** Convert this ad-hoc collection of HDAs to a formal collection tracked - by the server. - **/ - promoteToHistoryDatasetCollection : function _promote( history, collection_type, options ){ - options = options || {}; - options.url = this.url(); - options.type = "POST"; - var full_collection_type = collection_type; - var element_identifiers = [], - name = null; - - // This mechanism is rough - no error handling, allows invalid selections, no way - // for user to pick/override element identifiers. This is only really meant - if( collection_type == "list" ) { - this.chain().each( function( hda ) { - // TODO: Handle duplicate names. - var name = hda.attributes.name; - var id = hda.get('id'); - var content_type = hda.attributes.history_content_type; - if( content_type == "dataset" ) { - if( full_collection_type != "list" ) { - console.log( "Invalid collection type" ); - } - element_identifiers.push( { name: name, src: "hda", id: id } ); - } else { - if( full_collection_type == "list" ) { - full_collection_type = "list:" + hda.attributes.collection_type; - } else { - if( full_collection_type != "list:" + hda.attributes.collection_type ) { - console.log( "Invalid collection type" ); - } - } - element_identifiers.push( { name: name, src: "hdca", id: id } ); - } - }); - name = "New Dataset List"; - } else if( collection_type == "paired" ) { - var ids = this.ids(); - if( ids.length != 2 ){ - // TODO: Do something... - } - element_identifiers.push( { name: "forward", src: "hda", id: ids[ 0 ] } ); - element_identifiers.push( { name: "reverse", src: "hda", id: ids[ 1 ] } ); - name = "New Dataset Pair"; - } - options.data = {type: "dataset_collection", - name: name, - collection_type: full_collection_type, - element_identifiers: JSON.stringify(element_identifiers), - }; - - var xhr = jQuery.ajax( options ); - xhr.done( function( message, status, responseObj ){ - history.refresh( ); - }); - xhr.fail( function( xhr, status, message ){ - if( xhr.responseJSON && xhr.responseJSON.error ){ - error = xhr.responseJSON.error; - } else { - error = xhr.responseJSON; - } - xhr.responseText = error; - // Do something? - }); - return xhr; - }, - - /** String representation. */ - toString : function(){ - return ([ 'HDACollection(', [ this.historyId, this.length ].join(), ')' ].join( '' )); - } -}); - -var HistoryDatasetCollectionAssociation = HistoryContent.extend( -/** @lends HistoryDatasetCollectionAssociation.prototype */{ - /** default attributes for a model */ - defaults : { - // parent (containing) history - history_id : null, - // often used with tagging - model_class : 'HistoryDatasetCollectionAssociation', - history_content_type : 'dataset_collection', - hid : 0, - - id : null, - name : '(unnamed dataset collection)', - // one of HistoryDatasetAssociation.STATES, calling them all 'ok' for now. - state : 'ok', - - accessible : true, - deleted : false, - visible : true, - - purged : false, // Purged doesn't make sense for collections - at least right now. - - tags : [], - annotation : '' - }, - urls : function(){ - }, - - inReadyState : function(){ - return true; // TODO - }, - - // ........................................................................ search - /** what attributes of an collection will be used in a text search */ - searchAttributes : [ - 'name' - ], - - /** our attr keys don't often match the labels we display to the user - so, when using - * attribute specifiers ('name="bler"') in a term, allow passing in aliases for the - * following attr keys. - */ - searchAliases : { - title : 'name' - // TODO: Add tag... - }, - -}); - - //============================================================================== -return { - HistoryDatasetAssociation : HistoryDatasetAssociation, - HDACollection : HDACollection -};}); + return { + HistoryDatasetAssociation : HistoryDatasetAssociation + }; +}); diff --git a/static/scripts/mvc/grid/grid-view.js b/static/scripts/mvc/grid/grid-view.js index 4b593b507dd..34d433e7d3b 100644 --- a/static/scripts/mvc/grid/grid-view.js +++ b/static/scripts/mvc/grid/grid-view.js @@ -560,25 +560,24 @@ return Backbone.View.extend({ if (this.grid.can_async_op(operation)) { this.update_grid(); } else { - this.go_to(inbound, ''); + this.go_to(inbound, href); } // done return false; } - // check for href details - if (href) - { + // refresh grid + if (href) { this.go_to(inbound, href); return false; } - + // refresh grid if (this.grid.get('async')) { this.update_grid(); } else { - this.go_to(inbound, ''); + this.go_to(inbound, href); } // done @@ -596,9 +595,10 @@ return Backbone.View.extend({ this.grid.set('advanced_search', advanced_search); // get default url - if(!href) + if(!href) { href = this.grid.get('url_base') + '?' + $.param(this.grid.get_url_data()); - + } + // clear grid of transient request attributes. this.grid.set({ operation: undefined, diff --git a/static/scripts/mvc/history/current-history-panel.js b/static/scripts/mvc/history/current-history-panel.js index 72499772519..d16addeff46 100644 --- a/static/scripts/mvc/history/current-history-panel.js +++ b/static/scripts/mvc/history/current-history-panel.js @@ -53,7 +53,7 @@ var CurrentHistoryPanel = hpanel.HistoryPanel.extend( noneFoundMsg : _l( "No matching datasets found" ), // ......................................................................... SET UP - /** Set up the view, set up storage, bind listeners to HDACollection events + /** Set up the view, set up storage, bind listeners to HistoryContents events * @param {Object} attributes */ initialize : function( attributes ){ diff --git a/static/scripts/mvc/history/history-content-base-view.js b/static/scripts/mvc/history/history-content-base-view.js new file mode 100644 index 00000000000..edef1b5a999 --- /dev/null +++ b/static/scripts/mvc/history/history-content-base-view.js @@ -0,0 +1,26 @@ +define([ + "mvc/base-mvc", + "utils/localization" +], function( baseMVC, _l ){ +/* global Backbone */ +//============================================================================== +/** @class Read only view for history content views to extend. + * @name HistoryContentBaseView + * + * @augments Backbone.View + * @borrows LoggableMixin#logger as #logger + * @borrows LoggableMixin#log as #log + * @constructs + */ +var HistoryContentBaseView = Backbone.View.extend( baseMVC.LoggableMixin ).extend( +/** @lends HistoryContentBaseView.prototype */{ +}); + +//TODO: not sure base view class is warranted or even wise + + +//============================================================================== + return { + HistoryContentBaseView : HistoryContentBaseView + }; +}); diff --git a/static/scripts/mvc/history/history-content-base.js b/static/scripts/mvc/history/history-content-base.js new file mode 100644 index 00000000000..fabb7b5bd60 --- /dev/null +++ b/static/scripts/mvc/history/history-content-base.js @@ -0,0 +1,181 @@ +define([ + "mvc/base-mvc", + "utils/localization" +], function( baseMVC, _l ){ +//============================================================================== +/** @class base model for content items contained in a history or hdca. + * @name HistoryContent + * + * @augments Backbone.Model + * @borrows LoggableMixin#logger as #logger + * @borrows LoggableMixin#log as #log + * @constructs + */ +var HistoryContent = Backbone.Model.extend( baseMVC.LoggableMixin ).extend( { + idAttribute : 'type_id', + + constructor : function( attrs, options ){ + attrs.type_id = HistoryContent.typeIdStr( attrs.history_content_type, attrs.id ); + Backbone.Model.apply( this, arguments ); + }, + + initialize : function( attrs, options ){ + // assumes type won't change + this.on( 'change:id', this._createTypeId ); + //TODO: not sure this covers all the bases... + }, + _createTypeId : function(){ + this.set( 'type_id', TypeIdModel.typeIdStr( this.get( 'history_content_type' ), this.get( 'id' ) ) ); + }, + + // ........................................................................ common queries + /** the more common alias of visible */ + hidden : function(){ + return !this.get( 'visible' ); + }, + + /** based on show_deleted, show_hidden (gen. from the container control), + * would this ds show in the list of ds's? + * @param {Boolean} show_deleted are we showing deleted hdas? + * @param {Boolean} show_hidden are we showing hidden hdas? + */ + isVisible : function( show_deleted, show_hidden ){ + var isVisible = true; + if( ( !show_deleted ) + && ( this.get( 'deleted' ) || this.get( 'purged' ) ) ){ + isVisible = false; + } + if( ( !show_hidden ) + && ( !this.get( 'visible' ) ) ){ + isVisible = false; + } + return isVisible; + }, + + // ........................................................................ ajax + /** */ + urlRoot: galaxy_config.root + 'api/histories/', + + /** full url spec. for this HDA */ + url : function(){ + return this.urlRoot + this.get( 'history_id' ) + '/contents/' + + this.get('history_content_type') + 's/' + this.get( 'id' ); + }, + + /** save this HDA, _Mark_ing it as deleted (just a flag) */ + 'delete' : function _delete( options ){ + if( this.get( 'deleted' ) ){ return jQuery.when(); } + return this.save( { deleted: true }, options ); + }, + /** save this HDA, _Mark_ing it as undeleted */ + undelete : function _undelete( options ){ + if( !this.get( 'deleted' ) || this.get( 'purged' ) ){ return jQuery.when(); } + return this.save( { deleted: false }, options ); + }, + + /** save this HDA as not visible */ + hide : function _hide( options ){ + if( !this.get( 'visible' ) ){ return jQuery.when(); } + return this.save( { visible: false }, options ); + }, + /** save this HDA as visible */ + unhide : function _uhide( options ){ + if( this.get( 'visible' ) ){ return jQuery.when(); } + return this.save( { visible: true }, options ); + }, + + // ........................................................................ searching + /** search the attribute with key attrKey for the string searchFor; T/F if found */ + searchAttribute : function( attrKey, searchFor ){ + var attrVal = this.get( attrKey ); + //console.debug( 'searchAttribute', attrKey, attrVal, searchFor ); + // bail if empty searchFor or unsearchable values + if( !searchFor + || ( attrVal === undefined || attrVal === null ) ){ + return false; + } + // pass to sep. fn for deep search of array attributes + if( _.isArray( attrVal ) ){ return this._searchArrayAttribute( attrVal, searchFor ); } + return ( attrVal.toString().toLowerCase().indexOf( searchFor.toLowerCase() ) !== -1 ); + }, + + /** deep(er) search for array attributes; T/F if found */ + _searchArrayAttribute : function( array, searchFor ){ + //console.debug( '_searchArrayAttribute', array, searchFor ); + searchFor = searchFor.toLowerCase(); + //precondition: searchFor has already been validated as non-empty string + //precondition: assumes only 1 level array + //TODO: could possibly break up searchFor more (CSV...) + return _.any( array, function( elem ){ + return ( elem.toString().toLowerCase().indexOf( searchFor.toLowerCase() ) !== -1 ); + }); + }, + + /** search all searchAttributes for the string searchFor, + * returning a list of keys of attributes that contain searchFor + */ + search : function( searchFor ){ + var model = this; + return _.filter( this.searchAttributes, function( key ){ + return model.searchAttribute( key, searchFor ); + }); + }, + + /** alias of search, but returns a boolean; accepts attribute specifiers where + * the attributes searched can be narrowed to a single attribute using + * the form: matches( 'genome_build=hg19' ) + * (the attribute keys allowed can also be aliases to the true attribute key; + * see searchAliases above) + * @param {String} term plain text or ATTR_SPECIFIER sep. key=val pair + * @returns {Boolean} was term found in (any) attribute(s) + */ + matches : function( term ){ + var ATTR_SPECIFIER = '=', + split = term.split( ATTR_SPECIFIER ); + // attribute is specified - search only that + if( split.length >= 2 ){ + var attrKey = split[0]; + attrKey = this.searchAliases[ attrKey ] || attrKey; + return this.searchAttribute( attrKey, split[1] ); + } + // no attribute is specified - search all attributes in searchAttributes + return !!this.search( term ).length; + }, + + /** an implicit AND search for all terms; IOW, an hda must match all terms given + * where terms is a whitespace separated value string. + * e.g. given terms of: 'blah bler database=hg19' + * an HDA would have to have attributes containing blah AND bler AND a genome_build == hg19 + * To include whitespace in terms: wrap the term in double quotations. + */ + matchesAll : function( terms ){ + var model = this; + // break the terms up by whitespace and filter out the empty strings + terms = terms.match( /(".*"|\w*=".*"|\S*)/g ).filter( function( s ){ return !!s; }); + return _.all( terms, function( term ){ + term = term.replace( /"/g, '' ); + return model.matches( term ); + }); + }, + + // ........................................................................ misc + /** String representation */ + toString : function(){ + var nameAndId = this.get( 'id' ) || ''; + if( this.get( 'name' ) ){ + nameAndId = this.get( 'hid' ) + ' :"' + this.get( 'name' ) + '",' + nameAndId; + } + return 'HistoryContent(' + nameAndId + ')'; + } +}); + +/** create a type + id string for use in mixed collections */ +HistoryContent.typeIdStr = function _typeId( type, id ){ + return [ type, id ].join( '-' ); +}; + + +//============================================================================== +return { + HistoryContent : HistoryContent +};}); diff --git a/static/scripts/mvc/history/history-contents.js b/static/scripts/mvc/history/history-contents.js new file mode 100644 index 00000000000..973b9a90fec --- /dev/null +++ b/static/scripts/mvc/history/history-contents.js @@ -0,0 +1,277 @@ +define([ + "mvc/history/history-content-base", + "mvc/dataset/hda-model", + "mvc/collection/hdca-model", + "mvc/base-mvc", + "utils/localization" +], function( historyContent, hdaModel, hdcaModel, baseMVC, _l ){ +//============================================================================== +/** @class Backbone collection for history content. + * NOTE: history content seems like a dataset collection, but differs in that it is mixed: + * each element can be either an HDA (dataset) or a DatasetCollection and co-exist on + * the same level. + * Dataset collections on the other hand are not mixed and (so far) can only contain either + * HDAs or child dataset collections on one level. + * This is why this does not inherit from any of the DatasetCollections (currently). + * + * @borrows LoggableMixin#logger as #logger + * @borrows LoggableMixin#log as #log + * @constructs + */ +var HistoryContents = Backbone.Collection.extend( baseMVC.LoggableMixin ).extend( +/** @lends HistoryContents.prototype */{ + + ///** logger used to record this.log messages, commonly set to console */ + //// comment this out to suppress log output + //logger : console, + + /** since history content is a mix, override model fn into a factory, creating based on history_content_type */ + model : function( attrs, options ) { + if( attrs.history_content_type === "dataset" ) { + return new hdaModel.HistoryDatasetAssociation( attrs, options ); + } else if( attrs.history_content_type === "dataset_collection" ) { + return new hdcaModel.HistoryDatasetCollectionAssociation( attrs, options ); + } + // TODO: Handle unknown history_content_type... + throw new TypeError( 'Unknown history_content_type:' + attrs.history_content_type ); + }, + + /** Set up. + * @see Backbone.Collection#initialize + */ + initialize : function( models, options ){ + options = options || {}; + this.historyId = options.historyId; + //this._setUpListeners(); + }, + + /** root api url */ + urlRoot : galaxy_config.root + 'api/histories', + /** complete api url */ + url : function(){ + return this.urlRoot + '/' + this.historyId + '/contents'; + }, + + // ........................................................................ common queries + /** Get the ids of every hda in this collection + * @returns array of encoded ids + */ + ids : function(){ + return this.map( function( hda ){ return hda.get('id'); }); + }, + + /** Get hdas that are not ready + * @returns array of HDAs + */ + notReady : function(){ + return this.filter( function( hda ){ + return !hda.inReadyState(); + }); + }, + + /** Get the id of every hda in this collection not in a 'ready' state (running). + * @returns an array of hda ids + * @see HistoryDatasetAssociation#inReadyState + */ + running : function(){ + var idList = []; + this.each( function( item ){ + if( !item.inReadyState() ){ + idList.push( item.get( 'id' ) ); + } + }); + return idList; + }, + + /** Get the hda with the given hid + * @param {Int} hid the hid to search for + * @returns {HistoryDatasetAssociation} the hda with the given hid or undefined if not found + */ + getByHid : function( hid ){ + return _.first( this.filter( function( hda ){ return hda.get( 'hid' ) === hid; }) ); + }, + + /** Get every 'shown' hda in this collection based on show_deleted/hidden + * @param {Boolean} show_deleted are we showing deleted hdas? + * @param {Boolean} show_hidden are we showing hidden hdas? + * @returns array of hda models + * @see HistoryDatasetAssociation#isVisible + */ + getVisible : function( show_deleted, show_hidden, filters ){ + filters = filters || []; + //console.debug( 'filters:', filters ); + //TODO:?? why doesn't this return a collection? + // always filter by show deleted/hidden first + var filteredHdas = new HistoryContents( this.filter( function( item ){ + return item.isVisible( show_deleted, show_hidden ); + })); + + _.each( filters, function( filter_fn ){ + if( !_.isFunction( filter_fn ) ){ return; } + filteredHdas = new HistoryContents( filteredHdas.filter( filter_fn ) ); + }); + return filteredHdas; + }, + + /** return true if any hdas don't have details */ + haveDetails : function(){ + return this.all( function( hda ){ return hda.hasDetails(); }); + }, + + // ........................................................................ ajax + /** fetch detailed model data for all HDAs in this collection */ + fetchAllDetails : function( options ){ + options = options || {}; + var detailsFlag = { details: 'all' }; + options.data = ( options.data )?( _.extend( options.data, detailsFlag ) ):( detailsFlag ); + return this.fetch( options ); + }, + + /** using a queue, perform hdaModelAjaxFn on each of the hdas in this collection */ + ajaxQueue : function( hdaAjaxFn, options ){ + var deferred = jQuery.Deferred(), + startingLength = this.length, + responses = []; + + if( !startingLength ){ + deferred.resolve([]); + return deferred; + } + + // use reverse order (stylistic choice) + var ajaxFns = this.chain().reverse().map( function( hda, i ){ + return function(){ + var xhr = hdaAjaxFn.call( hda, options ); + // if successful, notify using the deferred to allow tracking progress + xhr.done( function( response ){ + deferred.notify({ curr: i, total: startingLength, response: response, model: hda }); + }); + // (regardless of previous error or success) if not last ajax call, shift and call the next + // if last fn, resolve deferred + xhr.always( function( response ){ + responses.push( response ); + if( ajaxFns.length ){ + ajaxFns.shift()(); + } else { + deferred.resolve( responses ); + } + }); + }; + }).value(); + // start the queue + ajaxFns.shift()(); + + return deferred; + }, + + // ........................................................................ sorting/filtering + /** return a new collection of HDAs whose attributes contain the substring matchesWhat */ + matches : function( matchesWhat ){ + return this.filter( function( hda ){ + return hda.matches( matchesWhat ); + }); + }, + + // ........................................................................ misc + set : function( models, options ){ + // arrrrrrrrrrrrrrrrrg... + // override to get a correct/smarter merge when incoming data is partial (e.g. stupid backbone) + // w/o this partial models from the server will fill in missing data with model defaults + // and overwrite existing data on the client + // see Backbone.Collection.set and _prepareModel + var collection = this; + models = _.map( models, function( model ){ + var attrs = model.attributes || model; // Handle raw json or Backbone model. + var typeId = historyContent.HistoryContent.typeIdStr( attrs.history_content_type, attrs.id ); + var existing = collection.get( typeId ); + if( !existing ){ return model; } + + // merge the models _BEFORE_ calling the superclass version + var merged = existing.toJSON(); + _.extend( merged, model ); + return merged; + }); + // now call superclass when the data is filled + Backbone.Collection.prototype.set.call( this, models, options ); + }, + + /** Convert this ad-hoc collection of HDAs to a formal collection tracked + by the server. + **/ + promoteToHistoryDatasetCollection : function _promote( history, collection_type, options ){ + options = options || {}; + options.url = this.url(); + options.type = "POST"; + var full_collection_type = collection_type; + var element_identifiers = [], + name = null; + + // This mechanism is rough - no error handling, allows invalid selections, no way + // for user to pick/override element identifiers. This is only really meant + if( collection_type === "list" ) { + this.chain().each( function( hda ) { + // TODO: Handle duplicate names. + var name = hda.attributes.name; + var id = hda.get('id'); + var content_type = hda.attributes.history_content_type; + if( content_type === "dataset" ) { + if( full_collection_type !== "list" ) { + console.log( "Invalid collection type" ); + } + element_identifiers.push( { name: name, src: "hda", id: id } ); + } else { + if( full_collection_type === "list" ) { + full_collection_type = "list:" + hda.attributes.collection_type; + } else { + if( full_collection_type !== "list:" + hda.attributes.collection_type ) { + console.log( "Invalid collection type" ); + } + } + element_identifiers.push( { name: name, src: "hdca", id: id } ); + } + }); + name = "New Dataset List"; + } else if( collection_type === "paired" ) { + var ids = this.ids(); + if( ids.length !== 2 ){ + // TODO: Do something... + } + element_identifiers.push( { name: "forward", src: "hda", id: ids[ 0 ] } ); + element_identifiers.push( { name: "reverse", src: "hda", id: ids[ 1 ] } ); + name = "New Dataset Pair"; + } + options.data = { + type: "dataset_collection", + name: name, + collection_type: full_collection_type, + element_identifiers: JSON.stringify( element_identifiers ) + }; + + var xhr = jQuery.ajax( options ); + xhr.done( function( message, status, responseObj ){ + history.refresh( ); + }); + xhr.fail( function( xhr, status, message ){ + if( xhr.responseJSON && xhr.responseJSON.error ){ + error = xhr.responseJSON.error; + } else { + error = xhr.responseJSON; + } + xhr.responseText = error; + // Do something? + }); + return xhr; + }, + + /** String representation. */ + toString : function(){ + return ([ 'HistoryContents(', [ this.parentId, this.length ].join(), ')' ].join( '' )); + } +}); + + +//============================================================================== + return { + HistoryContents : HistoryContents + }; +}); diff --git a/static/scripts/mvc/history/history-model.js b/static/scripts/mvc/history/history-model.js index 1d1d3faf112..7bbd622706f 100644 --- a/static/scripts/mvc/history/history-model.js +++ b/static/scripts/mvc/history/history-model.js @@ -1,8 +1,8 @@ define([ - "mvc/dataset/hda-model", + "mvc/history/history-contents", "mvc/base-mvc", "utils/localization" -], function( hdaModel, baseMVC, _l ){ +], function( historyContents, baseMVC, _l ){ //============================================================================== /** @class Model for a Galaxy history resource - both a record of user * tool use and a collection of the datasets those tools produced. @@ -45,8 +45,8 @@ var History = Backbone.Model.extend( baseMVC.LoggableMixin ).extend( this.logger = options.logger || null; this.log( this + ".initialize:", historyJSON, hdaJSON, options ); - /** HDACollection of the HDAs contained in this history. */ - this.hdas = new hdaModel.HDACollection( hdaJSON || [], { historyId: this.get( 'id' )}); + /** HistoryContents collection of the HDAs contained in this history. */ + this.hdas = new historyContents.HistoryContents( hdaJSON || [], { historyId: this.get( 'id' )}); // if we've got hdas passed in the constructor, load them if( hdaJSON && _.isArray( hdaJSON ) ){ this.hdas.reset( hdaJSON ); @@ -230,12 +230,12 @@ History.getHistoryData = function getHistoryData( historyId, options ){ } var data = {}; if( hdaDetailIds.length ) { - data[ "dataset_details" ] = hdaDetailIds.join( ',' ); + data.dataset_details = hdaDetailIds.join( ',' ); } if( hdcaDetailIds.length ) { // for symmetry, not actually used by backend of consumed // by frontend. - data[ "dataset_collection_details" ] = hdcaDetailIds.join( ',' ); + data.dataset_collection_details = hdcaDetailIds.join( ',' ); } return jQuery.ajax( galaxy_config.root + 'api/histories/' + historyData.id + '/contents', { data: data }); } diff --git a/static/scripts/mvc/history/history-panel.js b/static/scripts/mvc/history/history-panel.js index e418ceefe33..63d1bcdb232 100644 --- a/static/scripts/mvc/history/history-panel.js +++ b/static/scripts/mvc/history/history-panel.js @@ -2,11 +2,12 @@ define([ "mvc/dataset/hda-model", "mvc/dataset/hda-edit", "mvc/collection/dataset-collection-edit", + "mvc/history/history-contents", "mvc/history/readonly-history-panel", "mvc/tags", "mvc/annotations", "utils/localization" -], function( hdaModel, hdaEdit, datasetCollectionEdit, readonlyPanel, tagsMod, annotationsMod, _l ){ +], function( hdaModel, hdaEdit, datasetCollectionEdit, historyContents, readonlyPanel, tagsMod, annotationsMod, _l ){ /* ============================================================================= TODO: @@ -36,7 +37,7 @@ var HistoryPanel = readonlyPanel.ReadOnlyHistoryPanel.extend( HDAViewClass : hdaEdit.HDAEditView, // ......................................................................... SET UP - /** Set up the view, set up storage, bind listeners to HDACollection events + /** Set up the view, set up storage, bind listeners to HistoryContents events * @param {Object} attributes */ initialize : function( attributes ){ @@ -493,7 +494,7 @@ var HistoryPanel = readonlyPanel.ReadOnlyHistoryPanel.extend( /** return an HdaCollection of the models of all currenly selected hdas */ getSelectedHdaCollection : function(){ - return new hdaModel.HDACollection( _.map( this.getSelectedHdaViews(), function( hdaView ){ + return new historyContents.HistoryContents( _.map( this.getSelectedHdaViews(), function( hdaView ){ return hdaView.model; }), { historyId: this.model.id }); }, diff --git a/static/scripts/mvc/history/readonly-history-panel.js b/static/scripts/mvc/history/readonly-history-panel.js index 601ef6de51f..a9bcbff886f 100644 --- a/static/scripts/mvc/history/readonly-history-panel.js +++ b/static/scripts/mvc/history/readonly-history-panel.js @@ -97,7 +97,7 @@ var ReadOnlyHistoryPanel = Backbone.View.extend( baseMVC.LoggableMixin ).extend( noneFoundMsg : _l( 'No matching datasets found' ), // ......................................................................... SET UP - /** Set up the view, set up storage, bind listeners to HDACollection events + /** Set up the view, set up storage, bind listeners to HistoryContents events * @param {Object} attributes optional settings for the panel */ initialize : function( attributes ){ diff --git a/static/scripts/mvc/ui/ui-frames.js b/static/scripts/mvc/ui/ui-frames.js index d6583207d40..e04f632243d 100644 --- a/static/scripts/mvc/ui/ui-frames.js +++ b/static/scripts/mvc/ui/ui-frames.js @@ -196,7 +196,6 @@ var View = Backbone.View.extend( // Load content into frame. var content_elt = $frame_el.find('.f-content'); - console.log(content_elt); if (_.isFunction(options.content)) { options.content(content_elt); } diff --git a/static/scripts/packed/galaxy.workflow_editor.canvas.js b/static/scripts/packed/galaxy.workflow_editor.canvas.js index 64268193240..85c8cc9345f 100644 --- a/static/scripts/packed/galaxy.workflow_editor.canvas.js +++ b/static/scripts/packed/galaxy.workflow_editor.canvas.js @@ -1 +1 @@ -function CollectionTypeDescription(a){this.collectionType=a;this.isCollection=true;this.rank=a.split(":").length}$.extend(CollectionTypeDescription.prototype,{append:function(a){if(a===NULL_COLLECTION_TYPE_DESCRIPTION){return this}if(a===ANY_COLLECTION_TYPE_DESCRIPTION){return otherCollectionType}return new CollectionTypeDescription(this.collectionType+":"+a.collectionType)},canMatch:function(a){if(a===NULL_COLLECTION_TYPE_DESCRIPTION){return false}if(a===ANY_COLLECTION_TYPE_DESCRIPTION){return true}return a.collectionType==this.collectionType},canMapOver:function(b){if(b===NULL_COLLECTION_TYPE_DESCRIPTION){return false}if(b===ANY_COLLECTION_TYPE_DESCRIPTION){return false}if(this.rank<=b.rank){return false}var a=b.collectionType;return this._endsWith(this.collectionType,a)},effectiveMapOver:function(a){var c=a.collectionType;var b=this.collectionType.substring(0,this.collectionType.length-c.length-1);return new CollectionTypeDescription(b)},equal:function(a){return a.collectionType==this.collectionType},toString:function(){return"CollectionType["+this.collectionType+"]"},_endsWith:function(b,a){return b.indexOf(a,b.length-a.length)!==-1}});NULL_COLLECTION_TYPE_DESCRIPTION={isCollection:false,canMatch:function(a){return false},canMapOver:function(a){return false},toString:function(){return"NullCollectionType[]"},append:function(a){return a},equal:function(a){return a===this}};ANY_COLLECTION_TYPE_DESCRIPTION={isCollection:true,canMatch:function(a){return NULL_COLLECTION_TYPE_DESCRIPTION!==a},canMapOver:function(a){return false},toString:function(){return"AnyCollectionType[]"},append:function(a){throw"Cannot append to ANY_COLLECTION_TYPE_DESCRIPTION"},equal:function(a){return a===this}};var TerminalMapping=Backbone.Model.extend({initialize:function(a){this.mapOver=a.mapOver||NULL_COLLECTION_TYPE_DESCRIPTION;this.terminal=a.terminal;this.terminal.terminalMapping=this},disableMapOver:function(){this.setMapOver(NULL_COLLECTION_TYPE_DESCRIPTION)},setMapOver:function(a){this.mapOver=a;this.trigger("change")}});var TerminalMappingView=Backbone.View.extend({tagName:"div",className:"fa-icon-button fa fa-folder-o",initialize:function(b){var a="Run tool in parallel over collection";this.$el.tooltip({delay:500,title:a});this.model.bind("change",_.bind(this.render,this))},render:function(){if(this.model.mapOver.isCollection){this.$el.show()}else{this.$el.hide()}},});var InputTerminalMappingView=TerminalMappingView.extend({events:{click:"onClick",mouseenter:"onMouseEnter",mouseleave:"onMouseLeave",},onMouseEnter:function(b){var a=this.model;if(!a.terminal.connected()&&a.mapOver.isCollection){this.$el.css("color","red")}},onMouseLeave:function(a){this.$el.css("color","black")},onClick:function(b){var a=this.model;if(!a.terminal.connected()&&a.mapOver.isCollection){a.terminal.resetMapping()}},});var InputTerminalMapping=TerminalMapping;var InputCollectionTerminalMapping=TerminalMapping;var OutputTerminalMapping=TerminalMapping;var OutputTerminalMappingView=TerminalMappingView;var InputCollectionTerminalMappingView=InputTerminalMappingView;var OutputCollectionTerminalMapping=TerminalMapping;var OutputCollectionTerminalMappingView=TerminalMappingView;var Terminal=Backbone.Model.extend({initialize:function(a){this.element=a.element;this.connectors=[]},connect:function(a){this.connectors.push(a);if(this.node){this.node.markChanged()}},disconnect:function(a){this.connectors.splice($.inArray(a,this.connectors),1);if(this.node){this.node.markChanged();this.resetMappingIfNeeded()}},redraw:function(){$.each(this.connectors,function(a,b){b.redraw()})},destroy:function(){$.each(this.connectors.slice(),function(a,b){b.destroy()})},destroyInvalidConnections:function(){_.each(this.connectors,function(a){a.destroyIfInvalid()})},setMapOver:function(a){if(this.multiple){return}if(!this.mapOver().equal(a)){this.terminalMapping.setMapOver(a);_.each(this.node.output_terminals,function(b){b.setMapOver(a)})}},mapOver:function(){if(!this.terminalMapping){return NULL_COLLECTION_TYPE_DESCRIPTION}else{return this.terminalMapping.mapOver}},isMappedOver:function(){return this.terminalMapping&&this.terminalMapping.mapOver.isCollection},resetMapping:function(){this.terminalMapping.disableMapOver()},resetMappingIfNeeded:function(){},});var OutputTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.datatypes=a.datatypes},resetMappingIfNeeded:function(){if(!this.node.hasConnectedOutputTerminals()&&!this.node.hasConnectedMappedInputTerminals()){_.each(this.node.mappedInputTerminals(),function(b){b.resetMappingIfNeeded()})}var a=!this.node.hasMappedOverInputTerminals();if(a){this.resetMapping()}},resetMapping:function(){this.terminalMapping.disableMapOver();_.each(this.connectors,function(a){var b=a.handle2;if(b){b.resetMappingIfNeeded();a.destroyIfInvalid()}})}});var BaseInputTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.update(a.input)},canAccept:function(a){if(this._inputFilled()){return false}else{return this.attachable(a)}},resetMappingIfNeeded:function(){var b=this.mapOver();if(!b.isCollection){return}var a=this.node.hasConnectedMappedInputTerminals()||(!this.node.hasConnectedOutputTerminals());if(a){this.resetMapping()}},resetMapping:function(){this.terminalMapping.disableMapOver();if(!this.node.hasMappedOverInputTerminals()){_.each(this.node.output_terminals,function(a){a.resetMapping()})}},connected:function(){return this.connectors.length!==0},_inputFilled:function(){var a;if(!this.connected()){a=false}else{if(this.multiple){if(!this.connected()){a=false}else{var b=this.connectors[0].handle1;if(b===null){a=false}else{if(b.isDataCollectionInput||b.isMappedOver()||b.datatypes.indexOf("input_collection")>0){a=true}else{a=false}}}}else{a=true}}return a},_mappingConstraints:function(){if(!this.node){return[]}var b=this.mapOver();if(b.isCollection){return[b]}var a=[];if(!this.node.hasConnectedOutputTerminals()){_.each(this.node.connectedMappedInputTerminals(),function(c){a.push(c.mapOver())})}else{a.push(_.first(_.values(this.node.output_terminals)).mapOver())}return a},_producesAcceptableDatatype:function(a){for(var c in this.datatypes){var f=new Array();f=f.concat(a.datatypes);if(a.node.post_job_actions){for(var d in a.node.post_job_actions){var g=a.node.post_job_actions[d];if(g.action_type=="ChangeDatatypeAction"&&(g.output_name==""||g.output_name==a.name)&&g.action_arguments){f.push(g.action_arguments.newtype)}}}for(var b in f){var h=f[b];if(h=="input"||h=="input_collection"||issubtype(f[b],this.datatypes[c])){return true}}}return false},_otherCollectionType:function(a){var c=NULL_COLLECTION_TYPE_DESCRIPTION;if(a.isDataCollectionInput){c=a.collectionType}else{var b=a.mapOver();if(b.isCollection){c=b}}return c},});var InputTerminal=BaseInputTerminal.extend({update:function(a){this.datatypes=a.extensions;this.multiple=a.multiple;this.collection=false},connect:function(a){BaseInputTerminal.prototype.connect.call(this,a);var b=a.handle1;if(!b){return}var c=this._otherCollectionType(b);if(c.isCollection){this.setMapOver(c)}},attachable:function(b){var d=this._otherCollectionType(b);var a=this.mapOver();if(d.isCollection){if(this.multiple){if(this.connected()){return false}if(d.rank==1){return this._producesAcceptableDatatype(b)}else{return false}}if(a.isCollection&&a.canMatch(d)){return this._producesAcceptableDatatype(b)}else{var c=this._mappingConstraints();if(c.every(_.bind(d.canMatch,d))){return this._producesAcceptableDatatype(b)}else{return false}}}else{if(a.isCollection){return false}}return this._producesAcceptableDatatype(b)}});var InputCollectionTerminal=BaseInputTerminal.extend({update:function(a){this.multiple=false;this.collection=true;this.datatypes=a.extensions;if(a.collection_type){this.collectionType=new CollectionTypeDescription(a.collection_type)}else{this.collectionType=ANY_COLLECTION_TYPE_DESCRIPTION}},connect:function(b){BaseInputTerminal.prototype.connect.call(this,b);var a=b.handle1;if(!a){return}var c=this._effectiveMapOver(a);this.setMapOver(c)},_effectiveMapOver:function(a){var b=this.collectionType;var c=this._otherCollectionType(a);if(!b.canMatch(c)){return c.effectiveMapOver(b)}else{return NULL_COLLECTION_TYPE_DESCRIPTION}},_effectiveCollectionType:function(){var b=this.collectionType;var a=this.mapOver();return a.append(b)},attachable:function(b){var g=this._otherCollectionType(b);if(g.isCollection){var f=this._effectiveCollectionType();var a=this.mapOver();if(f.canMatch(g)){return this._producesAcceptableDatatype(b)}else{if(a.isCollection){return false}else{if(g.canMapOver(this.collectionType)){var d=this._effectiveMapOver(b);if(!d.isCollection){return false}var c=this._mappingConstraints();if(c.every(d.canMatch)){return this._producesAcceptableDatatype(b)}}}}}return false}});var OutputCollectionTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.datatypes=a.datatypes;this.collectionType=new CollectionTypeDescription(a.collection_type);this.isDataCollectionInput=true},update:function(a){var b=new CollectionTypeDescription(a.collection_type);if(b.collectionType!=this.collectionType.collectionType){_.each(this.connectors,function(c){c.destroy()})}this.collectionType=b}});function Connector(b,a){this.canvas=null;this.dragging=false;this.inner_color="#FFFFFF";this.outer_color="#D8B365";if(b&&a){this.connect(b,a)}}$.extend(Connector.prototype,{connect:function(b,a){this.handle1=b;if(this.handle1){this.handle1.connect(this)}this.handle2=a;if(this.handle2){this.handle2.connect(this)}},destroy:function(){if(this.handle1){this.handle1.disconnect(this)}if(this.handle2){this.handle2.disconnect(this)}$(this.canvas).remove()},destroyIfInvalid:function(){if(this.handle1&&this.handle2&&!this.handle2.attachable(this.handle1)){this.destroy()}},redraw:function(){var f=$("#canvas-container");if(!this.canvas){this.canvas=document.createElement("canvas");if(window.G_vmlCanvasManager){G_vmlCanvasManager.initElement(this.canvas)}f.append($(this.canvas));if(this.dragging){this.canvas.style.zIndex="300"}}var v=function(c){return $(c).offset().left-f.offset().left};var p=function(c){return $(c).offset().top-f.offset().top};if(!this.handle1||!this.handle2){return}var o=v(this.handle1.element)+5;var n=p(this.handle1.element)+5;var x=v(this.handle2.element)+5;var u=p(this.handle2.element)+5;var k=100;var r=Math.min(o,x);var a=Math.max(o,x);var q=Math.min(n,u);var B=Math.max(n,u);var d=Math.min(Math.max(Math.abs(B-q)/2,100),300);var w=r-k;var A=q-k;var y=a-r+2*k;var s=B-q+2*k;this.canvas.style.left=w+"px";this.canvas.style.top=A+"px";this.canvas.setAttribute("width",y);this.canvas.setAttribute("height",s);o-=w;n-=A;x-=w;u-=A;var z=this.canvas.getContext("2d"),h=null,l=null;var g=1;if(this.handle1&&this.handle1.isMappedOver()){var h=[-6,-3,0,3,6];g=5}else{var h=[0]}if(this.handle2&&this.handle2.isMappedOver()){var l=[-6,-3,0,3,6];g=5}else{var l=[0]}var b=this;for(var t=0;t1||l.length>1){m=1;j=3}b.draw_outlined_curve(o,n,x,u,d,m,j,h[t%h.length],l[t%l.length])}},draw_outlined_curve:function(j,i,l,k,a,b,f,g,d){var g=g||0;var d=d||0;var h=this.canvas.getContext("2d");h.lineCap="round";h.strokeStyle=this.outer_color;h.lineWidth=f;h.beginPath();h.moveTo(j,i+g);h.bezierCurveTo(j+a,i+g,l-a,k+d,l,k+d);h.stroke();h.strokeStyle=this.inner_color;h.lineWidth=b;h.beginPath();h.moveTo(j,i+g);h.bezierCurveTo(j+a,i+g,l-a,k+d,l,k+d);h.stroke()}});var Node=Backbone.Model.extend({initialize:function(a){this.element=a.element;this.input_terminals={};this.output_terminals={};this.tool_errors={}},connectedOutputTerminals:function(){return this._connectedTerminals(this.output_terminals)},_connectedTerminals:function(b){var a=[];$.each(b,function(c,d){if(d.connectors.length>0){a.push(d)}});return a},hasConnectedOutputTerminals:function(){var a=this.output_terminals;for(var b in a){if(a[b].connectors.length>0){return true}}return false},connectedMappedInputTerminals:function(){return this._connectedMappedTerminals(this.input_terminals)},hasConnectedMappedInputTerminals:function(){var c=this.input_terminals;for(var b in c){var a=c[b];if(a.connectors.length>0&&a.isMappedOver()){return true}}return false},_connectedMappedTerminals:function(b){var a=[];$.each(b,function(c,d){var f=d.mapOver();if(f.isCollection){if(d.connectors.length>0){a.push(d)}}});return a},mappedInputTerminals:function(){return this._mappedTerminals(this.input_terminals)},_mappedTerminals:function(b){var a=[];$.each(b,function(c,d){var f=d.mapOver();if(f.isCollection){a.push(d)}});return a},hasMappedOverInputTerminals:function(){var a=false;_.each(this.input_terminals,function(b){var c=b.mapOver();if(c.isCollection){a=true}});return a},redraw:function(){$.each(this.input_terminals,function(a,b){b.redraw()});$.each(this.output_terminals,function(a,b){b.redraw()})},destroy:function(){$.each(this.input_terminals,function(a,b){b.destroy()});$.each(this.output_terminals,function(a,b){b.destroy()});workflow.remove_node(this);$(this.element).remove()},make_active:function(){$(this.element).addClass("toolForm-active")},make_inactive:function(){var a=this.element.get(0);(function(b){b.removeChild(a);b.appendChild(a)})(a.parentNode);$(a).removeClass("toolForm-active")},init_field_data:function(b){if(b.type){this.type=b.type}this.name=b.name;this.form_html=b.form_html;this.tool_state=b.tool_state;this.tool_errors=b.tool_errors;this.tooltip=b.tooltip?b.tooltip:"";this.annotation=b.annotation;this.post_job_actions=b.post_job_actions?b.post_job_actions:{};this.workflow_outputs=b.workflow_outputs?b.workflow_outputs:[];var a=this;var c=new NodeView({el:this.element[0],node:a,});a.nodeView=c;$.each(b.data_inputs,function(f,d){c.addDataInput(d)});if((b.data_inputs.length>0)&&(b.data_outputs.length>0)){c.addRule()}$.each(b.data_outputs,function(f,d){c.addDataOutput(d)});c.render();workflow.node_changed(this)},update_field_data:function(d){var c=this;nodeView=c.nodeView;this.tool_state=d.tool_state;this.form_html=d.form_html;this.tool_errors=d.tool_errors;this.annotation=d.annotation;if("post_job_actions" in d){var f=$.parseJSON(d.post_job_actions);this.post_job_actions=f?f:{}}c.nodeView.renderToolErrors();var g=nodeView.$("div.inputs");var a=nodeView.newInputsDiv();var b={};_.each(d.data_inputs,function(h){var i=c.nodeView.addDataInput(h,a);b[h.name]=i});_.each(_.difference(_.values(nodeView.terminalViews),_.values(b)),function(h){h.el.terminal.destroy()});nodeView.terminalViews=b;if(d.data_outputs.length==1&&"collection_type" in d.data_outputs[0]){nodeView.updateDataOutput(d.data_outputs[0])}g.replaceWith(a);this.markChanged();this.redraw()},error:function(d){var a=$(this.element).find(".toolFormBody");a.find("div").remove();var c="
    "+d+"
    ";this.form_html=c;a.html(c);workflow.node_changed(this)},markChanged:function(){workflow.node_changed(this)}});function Workflow(a){this.canvas_container=a;this.id_counter=0;this.nodes={};this.name=null;this.has_changes=false;this.active_form_has_changes=false}$.extend(Workflow.prototype,{add_node:function(a){a.id=this.id_counter;a.element.attr("id","wf-node-step-"+a.id);this.id_counter++;this.nodes[a.id]=a;this.has_changes=true;a.workflow=this},remove_node:function(a){if(this.active_node==a){this.clear_active_node()}delete this.nodes[a.id];this.has_changes=true},remove_all:function(){wf=this;$.each(this.nodes,function(b,a){a.destroy();wf.remove_node(a)})},rectify_workflow_outputs:function(){var b=false;var a=false;$.each(this.nodes,function(c,d){if(d.workflow_outputs&&d.workflow_outputs.length>0){b=true}$.each(d.post_job_actions,function(g,f){if(f.action_type==="HideDatasetAction"){a=true}})});if(b!==false||a!==false){$.each(this.nodes,function(c,g){if(g.type==="tool"){var f=false;if(g.post_job_actions==null){g.post_job_actions={};f=true}var d=[];$.each(g.post_job_actions,function(i,h){if(h.action_type=="HideDatasetAction"){d.push(i)}});if(d.length>0){$.each(d,function(h,j){f=true;delete g.post_job_actions[j]})}if(b){$.each(g.output_terminals,function(i,j){var h=true;$.each(g.workflow_outputs,function(l,m){if(j.name===m){h=false}});if(h===true){f=true;var k={action_type:"HideDatasetAction",output_name:j.name,action_arguments:{}};g.post_job_actions["HideDatasetAction"+j.name]=null;g.post_job_actions["HideDatasetAction"+j.name]=k}})}if(workflow.active_node==g&&f===true){workflow.reload_active_node()}}})}},to_simple:function(){var a={};$.each(this.nodes,function(c,f){var g={};$.each(f.input_terminals,function(i,j){g[j.name]=null;var h=[];$.each(j.connectors,function(k,l){h[k]={id:l.handle1.node.id,output_name:l.handle1.name};g[j.name]=h})});var b={};if(f.post_job_actions){$.each(f.post_job_actions,function(j,h){var k={action_type:h.action_type,output_name:h.output_name,action_arguments:h.action_arguments};b[h.action_type+h.output_name]=null;b[h.action_type+h.output_name]=k})}if(!f.workflow_outputs){f.workflow_outputs=[]}var d={id:f.id,type:f.type,tool_id:f.tool_id,tool_state:f.tool_state,tool_errors:f.tool_errors,input_connections:g,position:$(f.element).position(),annotation:f.annotation,post_job_actions:f.post_job_actions,workflow_outputs:f.workflow_outputs};a[f.id]=d});return{steps:a}},from_simple:function(b){wf=this;var c=0;wf.name=b.name;var a=false;$.each(b.steps,function(g,f){var d=prebuild_node(f.type,f.name,f.tool_id);d.init_field_data(f);if(f.position){d.element.css({top:f.position.top,left:f.position.left})}d.id=f.id;wf.nodes[d.id]=d;c=Math.max(c,parseInt(g));if(!a&&d.type==="tool"){if(d.workflow_outputs.length>0){a=true}else{$.each(d.post_job_actions,function(i,h){if(h.action_type==="HideDatasetAction"){a=true}})}}});wf.id_counter=c+1;$.each(b.steps,function(g,f){var d=wf.nodes[g];$.each(f.input_connections,function(i,h){if(h){if(!$.isArray(h)){h=[h]}$.each(h,function(k,j){var m=wf.nodes[j.id];var n=new Connector();n.connect(m.output_terminals[j.output_name],d.input_terminals[i]);n.redraw()})}});if(a&&d.type==="tool"){$.each(d.output_terminals,function(h,i){if(d.post_job_actions["HideDatasetAction"+i.name]===undefined){d.workflow_outputs.push(i.name);callout=$(d.element).find(".callout."+i.name);callout.find("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png");workflow.has_changes=true}})}})},check_changes_in_active_form:function(){if(this.active_form_has_changes){this.has_changes=true;$("#right-content").find("form").submit();this.active_form_has_changes=false}},reload_active_node:function(){if(this.active_node){var a=this.active_node;this.clear_active_node();this.activate_node(a)}},clear_active_node:function(){if(this.active_node){this.active_node.make_inactive();this.active_node=null}parent.show_form_for_tool("
    No node selected
    ")},activate_node:function(a){if(this.active_node!=a){this.check_changes_in_active_form();this.clear_active_node();parent.show_form_for_tool(a.form_html+a.tooltip,a);a.make_active();this.active_node=a}},node_changed:function(a){this.has_changes=true;if(this.active_node==a){this.check_changes_in_active_form();parent.show_form_for_tool(a.form_html+a.tooltip,a)}},layout:function(){this.check_changes_in_active_form();this.has_changes=true;var i={};var b={};$.each(this.nodes,function(l,k){if(i[l]===undefined){i[l]=0}if(b[l]===undefined){b[l]=[]}});$.each(this.nodes,function(l,k){$.each(k.input_terminals,function(m,n){$.each(n.connectors,function(p,q){var o=q.handle1.node;i[k.id]+=1;b[o.id].push(k.id)})})});node_ids_by_level=[];while(true){level_parents=[];for(var a in i){if(i[a]==0){level_parents.push(a)}}if(level_parents.length==0){break}node_ids_by_level.push(level_parents);for(var f in level_parents){var j=level_parents[f];delete i[j];for(var g in b[j]){i[b[j][g]]-=1}}}if(i.length){return}var d=this.nodes;var h=80;v_pad=30;var c=h;$.each(node_ids_by_level,function(k,l){l.sort(function(p,o){return $(d[p].element).position().top-$(d[o].element).position().top});var m=0;var n=v_pad;$.each(l,function(o,r){var q=d[r];var p=$(q.element);$(p).css({top:n,left:c});m=Math.max(m,$(p).width());n+=$(p).height()+v_pad});c+=m+h});$.each(d,function(k,l){l.redraw()})},bounds_for_all_nodes:function(){var d=Infinity,b=-Infinity,c=Infinity,a=-Infinity,f;$.each(this.nodes,function(h,g){e=$(g.element);f=e.position();d=Math.min(d,f.left);b=Math.max(b,f.left+e.width());c=Math.min(c,f.top);a=Math.max(a,f.top+e.width())});return{xmin:d,xmax:b,ymin:c,ymax:a}},fit_canvas_to_nodes:function(){var a=this.bounds_for_all_nodes();var f=this.canvas_container.position();var i=this.canvas_container.parent();var d=fix_delta(a.xmin,100);var h=fix_delta(a.ymin,100);d=Math.max(d,f.left);h=Math.max(h,f.top);var c=f.left-d;var g=f.top-h;var b=round_up(a.xmax+100,100)+d;var j=round_up(a.ymax+100,100)+h;b=Math.max(b,-c+i.width());j=Math.max(j,-g+i.height());this.canvas_container.css({left:c,top:g,width:b,height:j});this.canvas_container.children().each(function(){var k=$(this).position();$(this).css("left",k.left+d);$(this).css("top",k.top+h)})}});function fix_delta(a,b){if(a3*b){new_pos=(Math.ceil(((a%b))/b)+1)*b;return(-(a-new_pos))}return 0}function round_up(a,b){return Math.ceil(a/b)*b}function prebuild_node(l,j,r){var i=$("
    ");var g=new Node({element:i});g.type=l;if(l=="tool"){g.tool_id=r}var n=$("
    "+j+"
    ");i.append(n);i.css("left",$(window).scrollLeft()+20);i.css("top",$(window).scrollTop()+20);var m=$("
    ");var h="
    loading tool info...
    ";m.append(h);g.form_html=h;i.append(m);var k=$("
    ");k.append($("
    ").addClass("fa-icon-button fa fa-times").click(function(b){g.destroy()}));i.appendTo("#canvas-container");var d=$("#canvas-container").position();var c=$("#canvas-container").parent();var a=i.width();var q=i.height();i.css({left:(-d.left)+(c.width()/2)-(a/2),top:(-d.top)+(c.height()/2)-(q/2)});k.prependTo(n);a+=(k.width()+10);i.css("width",a);$(i).bind("dragstart",function(){workflow.activate_node(g)}).bind("dragend",function(){workflow.node_changed(this);workflow.fit_canvas_to_nodes();canvas_manager.draw_overview()}).bind("dragclickonly",function(){workflow.activate_node(g)}).bind("drag",function(o,p){var f=$(this).offsetParent().offset(),b=p.offsetX-f.left,s=p.offsetY-f.top;$(this).css({left:b,top:s});$(this).find(".terminal").each(function(){this.terminal.redraw()})});return g}function add_node(b,d,a){var c=prebuild_node(b,d,a);workflow.add_node(c);workflow.fit_canvas_to_nodes();canvas_manager.draw_overview();workflow.activate_node(c);return c}var ext_to_type=null;var type_to_type=null;function issubtype(b,a){b=ext_to_type[b];a=ext_to_type[a];return(type_to_type[b])&&(a in type_to_type[b])}function populate_datatype_info(a){ext_to_type=a.ext_to_class_name;type_to_type=a.class_to_classes}var NodeView=Backbone.View.extend({initialize:function(a){this.node=a.node;this.output_width=Math.max(150,this.$el.width());this.tool_body=this.$el.find(".toolFormBody");this.tool_body.find("div").remove();this.newInputsDiv().appendTo(this.tool_body);this.terminalViews={};this.outputTerminlViews={}},render:function(){this.renderToolErrors();this.$el.css("width",Math.min(250,Math.max(this.$el.width(),this.output_width)))},renderToolErrors:function(){if(this.node.tool_errors){this.$el.addClass("tool-node-error")}else{this.$el.removeClass("tool-node-error")}},newInputsDiv:function(){return $("
    ")},updateMaxWidth:function(a){this.output_width=Math.max(this.output_width,a)},addRule:function(){this.tool_body.append($("
    "))},addDataInput:function(i,d){var j=true;if(!d){d=this.$(".inputs");j=false}var f=this.terminalViews[i.name];var h=(i.input_type=="dataset_collection")?InputCollectionTerminalView:InputTerminalView;if(f&&!(f instanceof h)){f.el.terminal.destroy();f=null}if(!f){f=new h({node:this.node,input:i})}else{var g=f.el.terminal;g.update(i);g.destroyInvalidConnections()}this.terminalViews[i.name]=f;var c=f.el;var b=new DataInputView({terminalElement:c,input:i,nodeView:this,skipResize:j});var a=b.$el;d.append(a.prepend(f.terminalElements()));return f},addDataOutput:function(a){var d=(a.collection_type)?OutputCollectionTerminalView:OutputTerminalView;var c=new d({node:this.node,output:a});var b=new DataOutputView({output:a,terminalElement:c.el,nodeView:this,});this.tool_body.append(b.$el.append(c.terminalElements()))},updateDataOutput:function(b){var a=this.node.output_terminals[b.name];a.update(b)}});var DataInputView=Backbone.View.extend({className:"form-row dataRow input-data-row",initialize:function(a){this.input=a.input;this.nodeView=a.nodeView;this.terminalElement=a.terminalElement;this.$el.attr("name",this.input.name).html(this.input.label);if(!a.skipResize){this.$el.css({position:"absolute",left:-1000,top:-1000,display:"none"});$("body").append(this.el);this.nodeView.updateMaxWidth(this.$el.outerWidth());this.$el.css({position:"",left:"",top:"",display:""});this.$el.remove()}},});var OutputCalloutView=Backbone.View.extend({tagName:"div",initialize:function(b){this.label=b.label;this.node=b.node;this.output=b.output;var a=this;this.$el.attr("class","callout "+this.label).css({display:"none"}).append($("
    ").append($("").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png").click(function(){if($.inArray(a.output.name,a.node.workflow_outputs)!=-1){a.node.workflow_outputs.splice($.inArray(a.output.name,a.node.workflow_outputs),1);a.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png")}else{a.node.workflow_outputs.push(a.output.name);a.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png")}workflow.has_changes=true;canvas_manager.draw_overview()}))).tooltip({delay:500,title:"Mark dataset as a workflow output. All unmarked datasets will be hidden."});this.$el.css({top:"50%",margin:"-8px 0px 0px 0px",right:8});this.$el.show();this.resetImage()},resetImage:function(){if($.inArray(this.output.name,this.node.workflow_outputs)===-1){this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png")}else{this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png")}},hoverImage:function(){this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-yellow.png")}});var DataOutputView=Backbone.View.extend({className:"form-row dataRow",initialize:function(c){this.output=c.output;this.terminalElement=c.terminalElement;this.nodeView=c.nodeView;var a=this.output;var b=a.name;var f=this.nodeView.node;var d=a.extensions.indexOf("input")>=0||a.extensions.indexOf("input_collection")>=0;if(!d){b=b+" ("+a.extensions.join(", ")+")"}this.$el.html(b);if(f.type=="tool"){var g=new OutputCalloutView({label:b,output:a,node:f,});this.$el.append(g.el);this.$el.hover(function(){g.hoverImage()},function(){g.resetImage()})}this.$el.css({position:"absolute",left:-1000,top:-1000,display:"none"});$("body").append(this.el);this.nodeView.updateMaxWidth(this.$el.outerWidth()+17);this.$el.css({position:"",left:"",top:"",display:""}).detach()}});var TerminalView=Backbone.View.extend({setupMappingView:function(b){var c=new this.terminalMappingClass({terminal:b});var a=new this.terminalMappingViewClass({model:c});a.render();b.terminalMappingView=a;this.terminalMappingView=a},terminalElements:function(){if(this.terminalMappingView){return[this.terminalMappingView.el,this.el]}else{return[this.el]}}});var BaseInputTerminalView=TerminalView.extend({className:"terminal input-terminal",initialize:function(c){var f=c.node;var a=c.input;var b=a.name;var d=this.terminalForInput(a);if(!d.multiple){this.setupMappingView(d)}this.el.terminal=d;d.node=f;d.name=b;f.input_terminals[b]=d},events:{dropinit:"onDropInit",dropstart:"onDropStart",dropend:"onDropEnd",drop:"onDrop",hover:"onHover",},onDropInit:function(b,c){var a=this.el.terminal;return $(c.drag).hasClass("output-terminal")&&a.canAccept(c.drag.terminal)},onDropStart:function(a,b){if(b.proxy.terminal){b.proxy.terminal.connectors[0].inner_color="#BBFFBB"}},onDropEnd:function(a,b){if(b.proxy.terminal){b.proxy.terminal.connectors[0].inner_color="#FFFFFF"}},onDrop:function(b,c){var a=this.el.terminal;new Connector(c.drag.terminal,a).redraw()},onHover:function(){var c=this.el;var b=c.terminal;if(b.connectors.length>0){var a=$("
    ").css({display:"none"}).appendTo("body").append($("
    ").append($("
    ").addClass("fa-icon-button fa fa-times").click(function(){$.each(b.connectors,function(f,d){if(d){d.destroy()}});a.remove()}))).bind("mouseleave",function(){$(this).remove()});a.css({top:$(c).offset().top-2,left:$(c).offset().left-a.width(),"padding-right":$(c).width()}).show()}},});var InputTerminalView=BaseInputTerminalView.extend({terminalMappingClass:InputTerminalMapping,terminalMappingViewClass:InputTerminalMappingView,terminalForInput:function(a){return new InputTerminal({element:this.el,input:a})},});var InputCollectionTerminalView=BaseInputTerminalView.extend({terminalMappingClass:InputCollectionTerminalMapping,terminalMappingViewClass:InputCollectionTerminalMappingView,terminalForInput:function(a){return new InputCollectionTerminal({element:this.el,input:a})},});var BaseOutputTerminalView=TerminalView.extend({className:"terminal output-terminal",initialize:function(c){var f=c.node;var a=c.output;var b=a.name;var d=this.terminalForOutput(a);this.setupMappingView(d);this.el.terminal=d;d.node=f;d.name=b;f.output_terminals[b]=d},events:{drag:"onDrag",dragstart:"onDragStart",dragend:"onDragEnd",},onDrag:function(b,c){var a=function(){var f=$(c.proxy).offsetParent().offset(),d=c.offsetX-f.left,g=c.offsetY-f.top;$(c.proxy).css({left:d,top:g});c.proxy.terminal.redraw();canvas_manager.update_viewport_overlay()};a();$("#canvas-container").get(0).scroll_panel.test(b,a)},onDragStart:function(b,f){$(f.available).addClass("input-terminal-active");workflow.check_changes_in_active_form();var a=$('
    ').appendTo("#canvas-container").get(0);a.terminal=new OutputTerminal({element:a});var g=new Connector();g.dragging=true;g.connect(this.el.terminal,a.terminal);return a},onDragEnd:function(a,b){b.proxy.terminal.connectors[0].destroy();$(b.proxy).remove();$(b.available).removeClass("input-terminal-active");$("#canvas-container").get(0).scroll_panel.stop()}});var OutputTerminalView=BaseOutputTerminalView.extend({terminalMappingClass:OutputTerminalMapping,terminalMappingViewClass:OutputTerminalMappingView,terminalForOutput:function(a){var c=a.extensions;var b=new OutputTerminal({element:this.el,datatypes:c});return b},});var OutputCollectionTerminalView=BaseOutputTerminalView.extend({terminalMappingClass:OutputCollectionTerminalMapping,terminalMappingViewClass:OutputCollectionTerminalMappingView,terminalForOutput:function(a){var c=a.collection_type;var b=new OutputCollectionTerminal({element:this.el,collection_type:c,datatypes:a.extensions});return b},});function ScrollPanel(a){this.panel=a}$.extend(ScrollPanel.prototype,{test:function(v,d){clearTimeout(this.timeout);var k=v.pageX,j=v.pageY,l=$(this.panel),c=l.position(),b=l.width(),i=l.height(),w=l.parent(),s=w.width(),a=w.height(),r=w.offset(),p=r.left,m=r.top,A=p+w.width(),u=m+w.height(),B=-(b-(s/2)),z=-(i-(a/2)),g=(s/2),f=(a/2),h=false,q=5,o=23;if(k-qA){if(c.left>B){var n=Math.min(o,c.left-B);l.css("left",c.left-n);h=true}}else{if(j-qu){if(c.top>z){var n=Math.min(o,c.top-B);l.css("top",(c.top-n)+"px");h=true}}}}}if(h){d();var l=this;this.timeout=setTimeout(function(){l.test(v,d)},50)}},stop:function(b,a){clearTimeout(this.timeout)}});function CanvasManager(b,a){this.cv=b;this.cc=this.cv.find("#canvas-container");this.oc=a.find("#overview-canvas");this.ov=a.find("#overview-viewport");this.init_drag()}$.extend(CanvasManager.prototype,{init_drag:function(){var b=this;var a=function(f,g){f=Math.min(f,b.cv.width()/2);f=Math.max(f,-b.cc.width()+b.cv.width()/2);g=Math.min(g,b.cv.height()/2);g=Math.max(g,-b.cc.height()+b.cv.height()/2);b.cc.css({left:f,top:g});b.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new ScrollPanel(this)});var d,c;this.cv.bind("dragstart",function(){var g=$(this).offset();var f=b.cc.position();c=f.top-g.top;d=f.left-g.left}).bind("drag",function(f,g){a(g.offsetX+d,g.offsetY+c)}).bind("dragend",function(){workflow.fit_canvas_to_nodes();b.draw_overview()});this.ov.bind("drag",function(k,l){var h=b.cc.width(),n=b.cc.height(),m=b.oc.width(),j=b.oc.height(),f=$(this).offsetParent().offset(),i=l.offsetX-f.left,g=l.offsetY-f.top;a(-(i/m*h),-(g/j*n))}).bind("dragend",function(){workflow.fit_canvas_to_nodes();b.draw_overview()});$("#overview-border").bind("drag",function(g,i){var j=$(this).offsetParent();var h=j.offset();var f=Math.max(j.width()-(i.offsetX-h.left),j.height()-(i.offsetY-h.top));$(this).css({width:f,height:f});b.draw_overview()});$("#overview-border div").bind("drag",function(){})},update_viewport_overlay:function(){var b=this.cc,f=this.cv,a=this.oc,c=this.ov,d=b.width(),j=b.height(),i=a.width(),g=a.height(),h=b.position();c.css({left:-(h.left/d*i),top:-(h.top/j*g),width:(f.width()/d*i)-2,height:(f.height()/j*g)-2})},draw_overview:function(){var j=$("#overview-canvas"),m=j.parent().parent().width(),i=j.get(0).getContext("2d"),d=$("#canvas-container").width(),l=$("#canvas-container").height();var g,a,k,f;var h=this.cv.width();var b=this.cv.height();if(d0){i.fillStyle="#E8A92D";i.strokeStyle="#E8A92D"}}i.fillRect(c,r,o,p);i.strokeRect(c,r,o,p)});this.update_viewport_overlay()}}); \ No newline at end of file +function CollectionTypeDescription(a){this.collectionType=a;this.isCollection=true;this.rank=a.split(":").length}$.extend(CollectionTypeDescription.prototype,{append:function(a){if(a===NULL_COLLECTION_TYPE_DESCRIPTION){return this}if(a===ANY_COLLECTION_TYPE_DESCRIPTION){return otherCollectionType}return new CollectionTypeDescription(this.collectionType+":"+a.collectionType)},canMatch:function(a){if(a===NULL_COLLECTION_TYPE_DESCRIPTION){return false}if(a===ANY_COLLECTION_TYPE_DESCRIPTION){return true}return a.collectionType==this.collectionType},canMapOver:function(b){if(b===NULL_COLLECTION_TYPE_DESCRIPTION){return false}if(b===ANY_COLLECTION_TYPE_DESCRIPTION){return false}if(this.rank<=b.rank){return false}var a=b.collectionType;return this._endsWith(this.collectionType,a)},effectiveMapOver:function(a){var c=a.collectionType;var b=this.collectionType.substring(0,this.collectionType.length-c.length-1);return new CollectionTypeDescription(b)},equal:function(a){return a.collectionType==this.collectionType},toString:function(){return"CollectionType["+this.collectionType+"]"},_endsWith:function(b,a){return b.indexOf(a,b.length-a.length)!==-1}});NULL_COLLECTION_TYPE_DESCRIPTION={isCollection:false,canMatch:function(a){return false},canMapOver:function(a){return false},toString:function(){return"NullCollectionType[]"},append:function(a){return a},equal:function(a){return a===this}};ANY_COLLECTION_TYPE_DESCRIPTION={isCollection:true,canMatch:function(a){return NULL_COLLECTION_TYPE_DESCRIPTION!==a},canMapOver:function(a){return false},toString:function(){return"AnyCollectionType[]"},append:function(a){throw"Cannot append to ANY_COLLECTION_TYPE_DESCRIPTION"},equal:function(a){return a===this}};var TerminalMapping=Backbone.Model.extend({initialize:function(a){this.mapOver=a.mapOver||NULL_COLLECTION_TYPE_DESCRIPTION;this.terminal=a.terminal;this.terminal.terminalMapping=this},disableMapOver:function(){this.setMapOver(NULL_COLLECTION_TYPE_DESCRIPTION)},setMapOver:function(a){this.mapOver=a;this.trigger("change")}});var TerminalMappingView=Backbone.View.extend({tagName:"div",className:"fa-icon-button fa fa-folder-o",initialize:function(b){var a="Run tool in parallel over collection";this.$el.tooltip({delay:500,title:a});this.model.bind("change",_.bind(this.render,this))},render:function(){if(this.model.mapOver.isCollection){this.$el.show()}else{this.$el.hide()}},});var InputTerminalMappingView=TerminalMappingView.extend({events:{click:"onClick",mouseenter:"onMouseEnter",mouseleave:"onMouseLeave",},onMouseEnter:function(b){var a=this.model;if(!a.terminal.connected()&&a.mapOver.isCollection){this.$el.css("color","red")}},onMouseLeave:function(a){this.$el.css("color","black")},onClick:function(b){var a=this.model;if(!a.terminal.connected()&&a.mapOver.isCollection){a.terminal.resetMapping()}},});var InputTerminalMapping=TerminalMapping;var InputCollectionTerminalMapping=TerminalMapping;var OutputTerminalMapping=TerminalMapping;var OutputTerminalMappingView=TerminalMappingView;var InputCollectionTerminalMappingView=InputTerminalMappingView;var OutputCollectionTerminalMapping=TerminalMapping;var OutputCollectionTerminalMappingView=TerminalMappingView;var Terminal=Backbone.Model.extend({initialize:function(a){this.element=a.element;this.connectors=[]},connect:function(a){this.connectors.push(a);if(this.node){this.node.markChanged()}},disconnect:function(a){this.connectors.splice($.inArray(a,this.connectors),1);if(this.node){this.node.markChanged();this.resetMappingIfNeeded()}},redraw:function(){$.each(this.connectors,function(a,b){b.redraw()})},destroy:function(){$.each(this.connectors.slice(),function(a,b){b.destroy()})},destroyInvalidConnections:function(){_.each(this.connectors,function(a){a.destroyIfInvalid()})},setMapOver:function(a){if(this.multiple){return}if(!this.mapOver().equal(a)){this.terminalMapping.setMapOver(a);_.each(this.node.output_terminals,function(b){b.setMapOver(a)})}},mapOver:function(){if(!this.terminalMapping){return NULL_COLLECTION_TYPE_DESCRIPTION}else{return this.terminalMapping.mapOver}},isMappedOver:function(){return this.terminalMapping&&this.terminalMapping.mapOver.isCollection},resetMapping:function(){this.terminalMapping.disableMapOver()},resetMappingIfNeeded:function(){},});var OutputTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.datatypes=a.datatypes},resetMappingIfNeeded:function(){if(!this.node.hasConnectedOutputTerminals()&&!this.node.hasConnectedMappedInputTerminals()){_.each(this.node.mappedInputTerminals(),function(b){b.resetMappingIfNeeded()})}var a=!this.node.hasMappedOverInputTerminals();if(a){this.resetMapping()}},resetMapping:function(){this.terminalMapping.disableMapOver();_.each(this.connectors,function(a){var b=a.handle2;if(b){b.resetMappingIfNeeded();a.destroyIfInvalid()}})}});var BaseInputTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.update(a.input)},canAccept:function(a){if(this._inputFilled()){return false}else{return this.attachable(a)}},resetMappingIfNeeded:function(){var b=this.mapOver();if(!b.isCollection){return}var a=this.node.hasConnectedMappedInputTerminals()||(!this.node.hasConnectedOutputTerminals());if(a){this.resetMapping()}},resetMapping:function(){this.terminalMapping.disableMapOver();if(!this.node.hasMappedOverInputTerminals()){_.each(this.node.output_terminals,function(a){a.resetMapping()})}},connected:function(){return this.connectors.length!==0},_inputFilled:function(){var a;if(!this.connected()){a=false}else{if(this.multiple){if(!this.connected()){a=false}else{var b=this.connectors[0].handle1;if(!b){a=false}else{if(b.isDataCollectionInput||b.isMappedOver()||b.datatypes.indexOf("input_collection")>0){a=true}else{a=false}}}}else{a=true}}return a},_mappingConstraints:function(){if(!this.node){return[]}var b=this.mapOver();if(b.isCollection){return[b]}var a=[];if(!this.node.hasConnectedOutputTerminals()){_.each(this.node.connectedMappedInputTerminals(),function(c){a.push(c.mapOver())})}else{a.push(_.first(_.values(this.node.output_terminals)).mapOver())}return a},_producesAcceptableDatatype:function(a){for(var c in this.datatypes){var f=new Array();f=f.concat(a.datatypes);if(a.node.post_job_actions){for(var d in a.node.post_job_actions){var g=a.node.post_job_actions[d];if(g.action_type=="ChangeDatatypeAction"&&(g.output_name==""||g.output_name==a.name)&&g.action_arguments){f.push(g.action_arguments.newtype)}}}for(var b in f){var h=f[b];if(h=="input"||h=="input_collection"||issubtype(f[b],this.datatypes[c])){return true}}}return false},_otherCollectionType:function(a){var c=NULL_COLLECTION_TYPE_DESCRIPTION;if(a.isDataCollectionInput){c=a.collectionType}else{var b=a.mapOver();if(b.isCollection){c=b}}return c},});var InputTerminal=BaseInputTerminal.extend({update:function(a){this.datatypes=a.extensions;this.multiple=a.multiple;this.collection=false},connect:function(a){BaseInputTerminal.prototype.connect.call(this,a);var b=a.handle1;if(!b){return}var c=this._otherCollectionType(b);if(c.isCollection){this.setMapOver(c)}},attachable:function(b){var d=this._otherCollectionType(b);var a=this.mapOver();if(d.isCollection){if(this.multiple){if(this.connected()){return false}if(d.rank==1){return this._producesAcceptableDatatype(b)}else{return false}}if(a.isCollection&&a.canMatch(d)){return this._producesAcceptableDatatype(b)}else{var c=this._mappingConstraints();if(c.every(_.bind(d.canMatch,d))){return this._producesAcceptableDatatype(b)}else{return false}}}else{if(a.isCollection){return false}}return this._producesAcceptableDatatype(b)}});var InputCollectionTerminal=BaseInputTerminal.extend({update:function(a){this.multiple=false;this.collection=true;this.datatypes=a.extensions;if(a.collection_type){this.collectionType=new CollectionTypeDescription(a.collection_type)}else{this.collectionType=ANY_COLLECTION_TYPE_DESCRIPTION}},connect:function(b){BaseInputTerminal.prototype.connect.call(this,b);var a=b.handle1;if(!a){return}var c=this._effectiveMapOver(a);this.setMapOver(c)},_effectiveMapOver:function(a){var b=this.collectionType;var c=this._otherCollectionType(a);if(!b.canMatch(c)){return c.effectiveMapOver(b)}else{return NULL_COLLECTION_TYPE_DESCRIPTION}},_effectiveCollectionType:function(){var b=this.collectionType;var a=this.mapOver();return a.append(b)},attachable:function(b){var g=this._otherCollectionType(b);if(g.isCollection){var f=this._effectiveCollectionType();var a=this.mapOver();if(f.canMatch(g)){return this._producesAcceptableDatatype(b)}else{if(a.isCollection){return false}else{if(g.canMapOver(this.collectionType)){var d=this._effectiveMapOver(b);if(!d.isCollection){return false}var c=this._mappingConstraints();if(c.every(d.canMatch)){return this._producesAcceptableDatatype(b)}}}}}return false}});var OutputCollectionTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.datatypes=a.datatypes;this.collectionType=new CollectionTypeDescription(a.collection_type);this.isDataCollectionInput=true},update:function(a){var b=new CollectionTypeDescription(a.collection_type);if(b.collectionType!=this.collectionType.collectionType){_.each(this.connectors,function(c){c.destroy()})}this.collectionType=b}});function Connector(b,a){this.canvas=null;this.dragging=false;this.inner_color="#FFFFFF";this.outer_color="#D8B365";if(b&&a){this.connect(b,a)}}$.extend(Connector.prototype,{connect:function(b,a){this.handle1=b;if(this.handle1){this.handle1.connect(this)}this.handle2=a;if(this.handle2){this.handle2.connect(this)}},destroy:function(){if(this.handle1){this.handle1.disconnect(this)}if(this.handle2){this.handle2.disconnect(this)}$(this.canvas).remove()},destroyIfInvalid:function(){if(this.handle1&&this.handle2&&!this.handle2.attachable(this.handle1)){this.destroy()}},redraw:function(){var f=$("#canvas-container");if(!this.canvas){this.canvas=document.createElement("canvas");if(window.G_vmlCanvasManager){G_vmlCanvasManager.initElement(this.canvas)}f.append($(this.canvas));if(this.dragging){this.canvas.style.zIndex="300"}}var v=function(c){return $(c).offset().left-f.offset().left};var p=function(c){return $(c).offset().top-f.offset().top};if(!this.handle1||!this.handle2){return}var o=v(this.handle1.element)+5;var n=p(this.handle1.element)+5;var x=v(this.handle2.element)+5;var u=p(this.handle2.element)+5;var k=100;var r=Math.min(o,x);var a=Math.max(o,x);var q=Math.min(n,u);var B=Math.max(n,u);var d=Math.min(Math.max(Math.abs(B-q)/2,100),300);var w=r-k;var A=q-k;var y=a-r+2*k;var s=B-q+2*k;this.canvas.style.left=w+"px";this.canvas.style.top=A+"px";this.canvas.setAttribute("width",y);this.canvas.setAttribute("height",s);o-=w;n-=A;x-=w;u-=A;var z=this.canvas.getContext("2d"),h=null,l=null;var g=1;if(this.handle1&&this.handle1.isMappedOver()){var h=[-6,-3,0,3,6];g=5}else{var h=[0]}if(this.handle2&&this.handle2.isMappedOver()){var l=[-6,-3,0,3,6];g=5}else{var l=[0]}var b=this;for(var t=0;t1||l.length>1){m=1;j=3}b.draw_outlined_curve(o,n,x,u,d,m,j,h[t%h.length],l[t%l.length])}},draw_outlined_curve:function(j,i,l,k,a,b,f,g,d){var g=g||0;var d=d||0;var h=this.canvas.getContext("2d");h.lineCap="round";h.strokeStyle=this.outer_color;h.lineWidth=f;h.beginPath();h.moveTo(j,i+g);h.bezierCurveTo(j+a,i+g,l-a,k+d,l,k+d);h.stroke();h.strokeStyle=this.inner_color;h.lineWidth=b;h.beginPath();h.moveTo(j,i+g);h.bezierCurveTo(j+a,i+g,l-a,k+d,l,k+d);h.stroke()}});var Node=Backbone.Model.extend({initialize:function(a){this.element=a.element;this.input_terminals={};this.output_terminals={};this.tool_errors={}},connectedOutputTerminals:function(){return this._connectedTerminals(this.output_terminals)},_connectedTerminals:function(b){var a=[];$.each(b,function(c,d){if(d.connectors.length>0){a.push(d)}});return a},hasConnectedOutputTerminals:function(){var a=this.output_terminals;for(var b in a){if(a[b].connectors.length>0){return true}}return false},connectedMappedInputTerminals:function(){return this._connectedMappedTerminals(this.input_terminals)},hasConnectedMappedInputTerminals:function(){var c=this.input_terminals;for(var b in c){var a=c[b];if(a.connectors.length>0&&a.isMappedOver()){return true}}return false},_connectedMappedTerminals:function(b){var a=[];$.each(b,function(c,d){var f=d.mapOver();if(f.isCollection){if(d.connectors.length>0){a.push(d)}}});return a},mappedInputTerminals:function(){return this._mappedTerminals(this.input_terminals)},_mappedTerminals:function(b){var a=[];$.each(b,function(c,d){var f=d.mapOver();if(f.isCollection){a.push(d)}});return a},hasMappedOverInputTerminals:function(){var a=false;_.each(this.input_terminals,function(b){var c=b.mapOver();if(c.isCollection){a=true}});return a},redraw:function(){$.each(this.input_terminals,function(a,b){b.redraw()});$.each(this.output_terminals,function(a,b){b.redraw()})},destroy:function(){$.each(this.input_terminals,function(a,b){b.destroy()});$.each(this.output_terminals,function(a,b){b.destroy()});workflow.remove_node(this);$(this.element).remove()},make_active:function(){$(this.element).addClass("toolForm-active")},make_inactive:function(){var a=this.element.get(0);(function(b){b.removeChild(a);b.appendChild(a)})(a.parentNode);$(a).removeClass("toolForm-active")},init_field_data:function(b){if(b.type){this.type=b.type}this.name=b.name;this.form_html=b.form_html;this.tool_state=b.tool_state;this.tool_errors=b.tool_errors;this.tooltip=b.tooltip?b.tooltip:"";this.annotation=b.annotation;this.post_job_actions=b.post_job_actions?b.post_job_actions:{};this.workflow_outputs=b.workflow_outputs?b.workflow_outputs:[];var a=this;var c=new NodeView({el:this.element[0],node:a,});a.nodeView=c;$.each(b.data_inputs,function(f,d){c.addDataInput(d)});if((b.data_inputs.length>0)&&(b.data_outputs.length>0)){c.addRule()}$.each(b.data_outputs,function(f,d){c.addDataOutput(d)});c.render();workflow.node_changed(this)},update_field_data:function(d){var c=this;nodeView=c.nodeView;this.tool_state=d.tool_state;this.form_html=d.form_html;this.tool_errors=d.tool_errors;this.annotation=d.annotation;if("post_job_actions" in d){var f=$.parseJSON(d.post_job_actions);this.post_job_actions=f?f:{}}c.nodeView.renderToolErrors();var g=nodeView.$("div.inputs");var a=nodeView.newInputsDiv();var b={};_.each(d.data_inputs,function(h){var i=c.nodeView.addDataInput(h,a);b[h.name]=i});_.each(_.difference(_.values(nodeView.terminalViews),_.values(b)),function(h){h.el.terminal.destroy()});nodeView.terminalViews=b;if(d.data_outputs.length==1&&"collection_type" in d.data_outputs[0]){nodeView.updateDataOutput(d.data_outputs[0])}g.replaceWith(a);this.markChanged();this.redraw()},error:function(d){var a=$(this.element).find(".toolFormBody");a.find("div").remove();var c="
    "+d+"
    ";this.form_html=c;a.html(c);workflow.node_changed(this)},markChanged:function(){workflow.node_changed(this)}});function Workflow(a){this.canvas_container=a;this.id_counter=0;this.nodes={};this.name=null;this.has_changes=false;this.active_form_has_changes=false}$.extend(Workflow.prototype,{add_node:function(a){a.id=this.id_counter;a.element.attr("id","wf-node-step-"+a.id);this.id_counter++;this.nodes[a.id]=a;this.has_changes=true;a.workflow=this},remove_node:function(a){if(this.active_node==a){this.clear_active_node()}delete this.nodes[a.id];this.has_changes=true},remove_all:function(){wf=this;$.each(this.nodes,function(b,a){a.destroy();wf.remove_node(a)})},rectify_workflow_outputs:function(){var b=false;var a=false;$.each(this.nodes,function(c,d){if(d.workflow_outputs&&d.workflow_outputs.length>0){b=true}$.each(d.post_job_actions,function(g,f){if(f.action_type==="HideDatasetAction"){a=true}})});if(b!==false||a!==false){$.each(this.nodes,function(c,g){if(g.type==="tool"){var f=false;if(g.post_job_actions==null){g.post_job_actions={};f=true}var d=[];$.each(g.post_job_actions,function(i,h){if(h.action_type=="HideDatasetAction"){d.push(i)}});if(d.length>0){$.each(d,function(h,j){f=true;delete g.post_job_actions[j]})}if(b){$.each(g.output_terminals,function(i,j){var h=true;$.each(g.workflow_outputs,function(l,m){if(j.name===m){h=false}});if(h===true){f=true;var k={action_type:"HideDatasetAction",output_name:j.name,action_arguments:{}};g.post_job_actions["HideDatasetAction"+j.name]=null;g.post_job_actions["HideDatasetAction"+j.name]=k}})}if(workflow.active_node==g&&f===true){workflow.reload_active_node()}}})}},to_simple:function(){var a={};$.each(this.nodes,function(c,f){var g={};$.each(f.input_terminals,function(i,j){g[j.name]=null;var h=[];$.each(j.connectors,function(k,l){h[k]={id:l.handle1.node.id,output_name:l.handle1.name};g[j.name]=h})});var b={};if(f.post_job_actions){$.each(f.post_job_actions,function(j,h){var k={action_type:h.action_type,output_name:h.output_name,action_arguments:h.action_arguments};b[h.action_type+h.output_name]=null;b[h.action_type+h.output_name]=k})}if(!f.workflow_outputs){f.workflow_outputs=[]}var d={id:f.id,type:f.type,tool_id:f.tool_id,tool_state:f.tool_state,tool_errors:f.tool_errors,input_connections:g,position:$(f.element).position(),annotation:f.annotation,post_job_actions:f.post_job_actions,workflow_outputs:f.workflow_outputs};a[f.id]=d});return{steps:a}},from_simple:function(b){wf=this;var c=0;wf.name=b.name;var a=false;$.each(b.steps,function(g,f){var d=prebuild_node(f.type,f.name,f.tool_id);d.init_field_data(f);if(f.position){d.element.css({top:f.position.top,left:f.position.left})}d.id=f.id;wf.nodes[d.id]=d;c=Math.max(c,parseInt(g));if(!a&&d.type==="tool"){if(d.workflow_outputs.length>0){a=true}else{$.each(d.post_job_actions,function(i,h){if(h.action_type==="HideDatasetAction"){a=true}})}}});wf.id_counter=c+1;$.each(b.steps,function(g,f){var d=wf.nodes[g];$.each(f.input_connections,function(i,h){if(h){if(!$.isArray(h)){h=[h]}$.each(h,function(k,j){var m=wf.nodes[j.id];var n=new Connector();n.connect(m.output_terminals[j.output_name],d.input_terminals[i]);n.redraw()})}});if(a&&d.type==="tool"){$.each(d.output_terminals,function(h,i){if(d.post_job_actions["HideDatasetAction"+i.name]===undefined){d.workflow_outputs.push(i.name);callout=$(d.element).find(".callout."+i.name);callout.find("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png");workflow.has_changes=true}})}})},check_changes_in_active_form:function(){if(this.active_form_has_changes){this.has_changes=true;$("#right-content").find("form").submit();this.active_form_has_changes=false}},reload_active_node:function(){if(this.active_node){var a=this.active_node;this.clear_active_node();this.activate_node(a)}},clear_active_node:function(){if(this.active_node){this.active_node.make_inactive();this.active_node=null}parent.show_form_for_tool("
    No node selected
    ")},activate_node:function(a){if(this.active_node!=a){this.check_changes_in_active_form();this.clear_active_node();parent.show_form_for_tool(a.form_html+a.tooltip,a);a.make_active();this.active_node=a}},node_changed:function(a){this.has_changes=true;if(this.active_node==a){this.check_changes_in_active_form();parent.show_form_for_tool(a.form_html+a.tooltip,a)}},layout:function(){this.check_changes_in_active_form();this.has_changes=true;var i={};var b={};$.each(this.nodes,function(l,k){if(i[l]===undefined){i[l]=0}if(b[l]===undefined){b[l]=[]}});$.each(this.nodes,function(l,k){$.each(k.input_terminals,function(m,n){$.each(n.connectors,function(p,q){var o=q.handle1.node;i[k.id]+=1;b[o.id].push(k.id)})})});node_ids_by_level=[];while(true){level_parents=[];for(var a in i){if(i[a]==0){level_parents.push(a)}}if(level_parents.length==0){break}node_ids_by_level.push(level_parents);for(var f in level_parents){var j=level_parents[f];delete i[j];for(var g in b[j]){i[b[j][g]]-=1}}}if(i.length){return}var d=this.nodes;var h=80;v_pad=30;var c=h;$.each(node_ids_by_level,function(k,l){l.sort(function(p,o){return $(d[p].element).position().top-$(d[o].element).position().top});var m=0;var n=v_pad;$.each(l,function(o,r){var q=d[r];var p=$(q.element);$(p).css({top:n,left:c});m=Math.max(m,$(p).width());n+=$(p).height()+v_pad});c+=m+h});$.each(d,function(k,l){l.redraw()})},bounds_for_all_nodes:function(){var d=Infinity,b=-Infinity,c=Infinity,a=-Infinity,f;$.each(this.nodes,function(h,g){e=$(g.element);f=e.position();d=Math.min(d,f.left);b=Math.max(b,f.left+e.width());c=Math.min(c,f.top);a=Math.max(a,f.top+e.width())});return{xmin:d,xmax:b,ymin:c,ymax:a}},fit_canvas_to_nodes:function(){var a=this.bounds_for_all_nodes();var f=this.canvas_container.position();var i=this.canvas_container.parent();var d=fix_delta(a.xmin,100);var h=fix_delta(a.ymin,100);d=Math.max(d,f.left);h=Math.max(h,f.top);var c=f.left-d;var g=f.top-h;var b=round_up(a.xmax+100,100)+d;var j=round_up(a.ymax+100,100)+h;b=Math.max(b,-c+i.width());j=Math.max(j,-g+i.height());this.canvas_container.css({left:c,top:g,width:b,height:j});this.canvas_container.children().each(function(){var k=$(this).position();$(this).css("left",k.left+d);$(this).css("top",k.top+h)})}});function fix_delta(a,b){if(a3*b){new_pos=(Math.ceil(((a%b))/b)+1)*b;return(-(a-new_pos))}return 0}function round_up(a,b){return Math.ceil(a/b)*b}function prebuild_node(l,j,r){var i=$("
    ");var g=new Node({element:i});g.type=l;if(l=="tool"){g.tool_id=r}var n=$("
    "+j+"
    ");i.append(n);i.css("left",$(window).scrollLeft()+20);i.css("top",$(window).scrollTop()+20);var m=$("
    ");var h="
    loading tool info...
    ";m.append(h);g.form_html=h;i.append(m);var k=$("
    ");k.append($("
    ").addClass("fa-icon-button fa fa-times").click(function(b){g.destroy()}));i.appendTo("#canvas-container");var d=$("#canvas-container").position();var c=$("#canvas-container").parent();var a=i.width();var q=i.height();i.css({left:(-d.left)+(c.width()/2)-(a/2),top:(-d.top)+(c.height()/2)-(q/2)});k.prependTo(n);a+=(k.width()+10);i.css("width",a);$(i).bind("dragstart",function(){workflow.activate_node(g)}).bind("dragend",function(){workflow.node_changed(this);workflow.fit_canvas_to_nodes();canvas_manager.draw_overview()}).bind("dragclickonly",function(){workflow.activate_node(g)}).bind("drag",function(o,p){var f=$(this).offsetParent().offset(),b=p.offsetX-f.left,s=p.offsetY-f.top;$(this).css({left:b,top:s});$(this).find(".terminal").each(function(){this.terminal.redraw()})});return g}function add_node(b,d,a){var c=prebuild_node(b,d,a);workflow.add_node(c);workflow.fit_canvas_to_nodes();canvas_manager.draw_overview();workflow.activate_node(c);return c}var ext_to_type=null;var type_to_type=null;function issubtype(b,a){b=ext_to_type[b];a=ext_to_type[a];return(type_to_type[b])&&(a in type_to_type[b])}function populate_datatype_info(a){ext_to_type=a.ext_to_class_name;type_to_type=a.class_to_classes}var NodeView=Backbone.View.extend({initialize:function(a){this.node=a.node;this.output_width=Math.max(150,this.$el.width());this.tool_body=this.$el.find(".toolFormBody");this.tool_body.find("div").remove();this.newInputsDiv().appendTo(this.tool_body);this.terminalViews={};this.outputTerminlViews={}},render:function(){this.renderToolErrors();this.$el.css("width",Math.min(250,Math.max(this.$el.width(),this.output_width)))},renderToolErrors:function(){if(this.node.tool_errors){this.$el.addClass("tool-node-error")}else{this.$el.removeClass("tool-node-error")}},newInputsDiv:function(){return $("
    ")},updateMaxWidth:function(a){this.output_width=Math.max(this.output_width,a)},addRule:function(){this.tool_body.append($("
    "))},addDataInput:function(i,d){var j=true;if(!d){d=this.$(".inputs");j=false}var f=this.terminalViews[i.name];var h=(i.input_type=="dataset_collection")?InputCollectionTerminalView:InputTerminalView;if(f&&!(f instanceof h)){f.el.terminal.destroy();f=null}if(!f){f=new h({node:this.node,input:i})}else{var g=f.el.terminal;g.update(i);g.destroyInvalidConnections()}this.terminalViews[i.name]=f;var c=f.el;var b=new DataInputView({terminalElement:c,input:i,nodeView:this,skipResize:j});var a=b.$el;d.append(a.prepend(f.terminalElements()));return f},addDataOutput:function(a){var d=(a.collection_type)?OutputCollectionTerminalView:OutputTerminalView;var c=new d({node:this.node,output:a});var b=new DataOutputView({output:a,terminalElement:c.el,nodeView:this,});this.tool_body.append(b.$el.append(c.terminalElements()))},updateDataOutput:function(b){var a=this.node.output_terminals[b.name];a.update(b)}});var DataInputView=Backbone.View.extend({className:"form-row dataRow input-data-row",initialize:function(a){this.input=a.input;this.nodeView=a.nodeView;this.terminalElement=a.terminalElement;this.$el.attr("name",this.input.name).html(this.input.label);if(!a.skipResize){this.$el.css({position:"absolute",left:-1000,top:-1000,display:"none"});$("body").append(this.el);this.nodeView.updateMaxWidth(this.$el.outerWidth());this.$el.css({position:"",left:"",top:"",display:""});this.$el.remove()}},});var OutputCalloutView=Backbone.View.extend({tagName:"div",initialize:function(b){this.label=b.label;this.node=b.node;this.output=b.output;var a=this;this.$el.attr("class","callout "+this.label).css({display:"none"}).append($("
    ").append($("").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png").click(function(){if($.inArray(a.output.name,a.node.workflow_outputs)!=-1){a.node.workflow_outputs.splice($.inArray(a.output.name,a.node.workflow_outputs),1);a.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png")}else{a.node.workflow_outputs.push(a.output.name);a.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png")}workflow.has_changes=true;canvas_manager.draw_overview()}))).tooltip({delay:500,title:"Mark dataset as a workflow output. All unmarked datasets will be hidden."});this.$el.css({top:"50%",margin:"-8px 0px 0px 0px",right:8});this.$el.show();this.resetImage()},resetImage:function(){if($.inArray(this.output.name,this.node.workflow_outputs)===-1){this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png")}else{this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png")}},hoverImage:function(){this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-yellow.png")}});var DataOutputView=Backbone.View.extend({className:"form-row dataRow",initialize:function(c){this.output=c.output;this.terminalElement=c.terminalElement;this.nodeView=c.nodeView;var a=this.output;var b=a.name;var f=this.nodeView.node;var d=a.extensions.indexOf("input")>=0||a.extensions.indexOf("input_collection")>=0;if(!d){b=b+" ("+a.extensions.join(", ")+")"}this.$el.html(b);if(f.type=="tool"){var g=new OutputCalloutView({label:b,output:a,node:f,});this.$el.append(g.el);this.$el.hover(function(){g.hoverImage()},function(){g.resetImage()})}this.$el.css({position:"absolute",left:-1000,top:-1000,display:"none"});$("body").append(this.el);this.nodeView.updateMaxWidth(this.$el.outerWidth()+17);this.$el.css({position:"",left:"",top:"",display:""}).detach()}});var TerminalView=Backbone.View.extend({setupMappingView:function(b){var c=new this.terminalMappingClass({terminal:b});var a=new this.terminalMappingViewClass({model:c});a.render();b.terminalMappingView=a;this.terminalMappingView=a},terminalElements:function(){if(this.terminalMappingView){return[this.terminalMappingView.el,this.el]}else{return[this.el]}}});var BaseInputTerminalView=TerminalView.extend({className:"terminal input-terminal",initialize:function(c){var f=c.node;var a=c.input;var b=a.name;var d=this.terminalForInput(a);if(!d.multiple){this.setupMappingView(d)}this.el.terminal=d;d.node=f;d.name=b;f.input_terminals[b]=d},events:{dropinit:"onDropInit",dropstart:"onDropStart",dropend:"onDropEnd",drop:"onDrop",hover:"onHover",},onDropInit:function(b,c){var a=this.el.terminal;return $(c.drag).hasClass("output-terminal")&&a.canAccept(c.drag.terminal)},onDropStart:function(a,b){if(b.proxy.terminal){b.proxy.terminal.connectors[0].inner_color="#BBFFBB"}},onDropEnd:function(a,b){if(b.proxy.terminal){b.proxy.terminal.connectors[0].inner_color="#FFFFFF"}},onDrop:function(b,c){var a=this.el.terminal;new Connector(c.drag.terminal,a).redraw()},onHover:function(){var c=this.el;var b=c.terminal;if(b.connectors.length>0){var a=$("
    ").css({display:"none"}).appendTo("body").append($("
    ").append($("
    ").addClass("fa-icon-button fa fa-times").click(function(){$.each(b.connectors,function(f,d){if(d){d.destroy()}});a.remove()}))).bind("mouseleave",function(){$(this).remove()});a.css({top:$(c).offset().top-2,left:$(c).offset().left-a.width(),"padding-right":$(c).width()}).show()}},});var InputTerminalView=BaseInputTerminalView.extend({terminalMappingClass:InputTerminalMapping,terminalMappingViewClass:InputTerminalMappingView,terminalForInput:function(a){return new InputTerminal({element:this.el,input:a})},});var InputCollectionTerminalView=BaseInputTerminalView.extend({terminalMappingClass:InputCollectionTerminalMapping,terminalMappingViewClass:InputCollectionTerminalMappingView,terminalForInput:function(a){return new InputCollectionTerminal({element:this.el,input:a})},});var BaseOutputTerminalView=TerminalView.extend({className:"terminal output-terminal",initialize:function(c){var f=c.node;var a=c.output;var b=a.name;var d=this.terminalForOutput(a);this.setupMappingView(d);this.el.terminal=d;d.node=f;d.name=b;f.output_terminals[b]=d},events:{drag:"onDrag",dragstart:"onDragStart",dragend:"onDragEnd",},onDrag:function(b,c){var a=function(){var f=$(c.proxy).offsetParent().offset(),d=c.offsetX-f.left,g=c.offsetY-f.top;$(c.proxy).css({left:d,top:g});c.proxy.terminal.redraw();canvas_manager.update_viewport_overlay()};a();$("#canvas-container").get(0).scroll_panel.test(b,a)},onDragStart:function(b,f){$(f.available).addClass("input-terminal-active");workflow.check_changes_in_active_form();var a=$('
    ').appendTo("#canvas-container").get(0);a.terminal=new OutputTerminal({element:a});var g=new Connector();g.dragging=true;g.connect(this.el.terminal,a.terminal);return a},onDragEnd:function(a,b){b.proxy.terminal.connectors[0].destroy();$(b.proxy).remove();$(b.available).removeClass("input-terminal-active");$("#canvas-container").get(0).scroll_panel.stop()}});var OutputTerminalView=BaseOutputTerminalView.extend({terminalMappingClass:OutputTerminalMapping,terminalMappingViewClass:OutputTerminalMappingView,terminalForOutput:function(a){var c=a.extensions;var b=new OutputTerminal({element:this.el,datatypes:c});return b},});var OutputCollectionTerminalView=BaseOutputTerminalView.extend({terminalMappingClass:OutputCollectionTerminalMapping,terminalMappingViewClass:OutputCollectionTerminalMappingView,terminalForOutput:function(a){var c=a.collection_type;var b=new OutputCollectionTerminal({element:this.el,collection_type:c,datatypes:a.extensions});return b},});function ScrollPanel(a){this.panel=a}$.extend(ScrollPanel.prototype,{test:function(v,d){clearTimeout(this.timeout);var k=v.pageX,j=v.pageY,l=$(this.panel),c=l.position(),b=l.width(),i=l.height(),w=l.parent(),s=w.width(),a=w.height(),r=w.offset(),p=r.left,m=r.top,A=p+w.width(),u=m+w.height(),B=-(b-(s/2)),z=-(i-(a/2)),g=(s/2),f=(a/2),h=false,q=5,o=23;if(k-qA){if(c.left>B){var n=Math.min(o,c.left-B);l.css("left",c.left-n);h=true}}else{if(j-qu){if(c.top>z){var n=Math.min(o,c.top-B);l.css("top",(c.top-n)+"px");h=true}}}}}if(h){d();var l=this;this.timeout=setTimeout(function(){l.test(v,d)},50)}},stop:function(b,a){clearTimeout(this.timeout)}});function CanvasManager(b,a){this.cv=b;this.cc=this.cv.find("#canvas-container");this.oc=a.find("#overview-canvas");this.ov=a.find("#overview-viewport");this.init_drag()}$.extend(CanvasManager.prototype,{init_drag:function(){var b=this;var a=function(f,g){f=Math.min(f,b.cv.width()/2);f=Math.max(f,-b.cc.width()+b.cv.width()/2);g=Math.min(g,b.cv.height()/2);g=Math.max(g,-b.cc.height()+b.cv.height()/2);b.cc.css({left:f,top:g});b.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new ScrollPanel(this)});var d,c;this.cv.bind("dragstart",function(){var g=$(this).offset();var f=b.cc.position();c=f.top-g.top;d=f.left-g.left}).bind("drag",function(f,g){a(g.offsetX+d,g.offsetY+c)}).bind("dragend",function(){workflow.fit_canvas_to_nodes();b.draw_overview()});this.ov.bind("drag",function(k,l){var h=b.cc.width(),n=b.cc.height(),m=b.oc.width(),j=b.oc.height(),f=$(this).offsetParent().offset(),i=l.offsetX-f.left,g=l.offsetY-f.top;a(-(i/m*h),-(g/j*n))}).bind("dragend",function(){workflow.fit_canvas_to_nodes();b.draw_overview()});$("#overview-border").bind("drag",function(g,i){var j=$(this).offsetParent();var h=j.offset();var f=Math.max(j.width()-(i.offsetX-h.left),j.height()-(i.offsetY-h.top));$(this).css({width:f,height:f});b.draw_overview()});$("#overview-border div").bind("drag",function(){})},update_viewport_overlay:function(){var b=this.cc,f=this.cv,a=this.oc,c=this.ov,d=b.width(),j=b.height(),i=a.width(),g=a.height(),h=b.position();c.css({left:-(h.left/d*i),top:-(h.top/j*g),width:(f.width()/d*i)-2,height:(f.height()/j*g)-2})},draw_overview:function(){var j=$("#overview-canvas"),m=j.parent().parent().width(),i=j.get(0).getContext("2d"),d=$("#canvas-container").width(),l=$("#canvas-container").height();var g,a,k,f;var h=this.cv.width();var b=this.cv.height();if(d0){i.fillStyle="#E8A92D";i.strokeStyle="#E8A92D"}}i.fillRect(c,r,o,p);i.strokeRect(c,r,o,p)});this.update_viewport_overlay()}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/collection/dataset-collection-base.js b/static/scripts/packed/mvc/collection/dataset-collection-base.js index b51587bd291..f7cb2d2c6bd 100644 --- a/static/scripts/packed/mvc/collection/dataset-collection-base.js +++ b/static/scripts/packed/mvc/collection/dataset-collection-base.js @@ -1 +1 @@ -define(["mvc/dataset/hda-model","mvc/dataset/hda-base"],function(b,a){var c=a.HistoryContentBaseView.extend({className:"dataset hda history-panel-hda",id:function(){return"hdca-"+this.model.get("id")},initialize:function(d){if(d.logger){this.logger=this.model.logger=d.logger}this.log(this+".initialize:",d);this.selectable=d.selectable||false;this.selected=d.selected||false;this.expanded=d.expanded||false},render:function(e){var d=this._buildNewRender();this._queueNewRender(d,e);return this},templateSkeleton:function(){return['
    ','
    ',"<% if ( deleted ) { %>",'
    ',_l("This dataset has been deleted."),"
    ","<% } %>","<% if ( ! visible ) { %>",'
    ',_l("This dataset has been hidden."),"
    ","<% } %>","
    ",'
    ','
    ','
    ','','
    ','<%= hid %> ','<%= name %>',"
    ","
    ",'
    ',"
    "].join("")},templateBody:function(){return['
    ','
    ',"A dataset collection.","
    "].join("")},_buildNewRender:function(){var d=$(_.template(this.templateSkeleton(),this.model.toJSON()));d.find(".dataset-primary-actions").append(this._render_titleButtons());d.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(d);return d},_render_titleButtons:function(){return[]},_render_body:function(){var e=$('
    Error: unknown state "'+this.model.get("state")+'".
    '),d=this["_render_body_"+this.model.get("state")];if(_.isFunction(d)){e=d.call(this)}this._setUpBehaviors(e);if(this.expanded){e.show()}return e},_setUpBehaviors:function(d){d=d||this.$el;make_popup_menus(d);d.find("[title]").tooltip({placement:"bottom"})},events:{"click .dataset-title-bar":"toggleBodyVisibility","keydown .dataset-title-bar":"toggleBodyVisibility","click .dataset-selector":"toggleSelect"},expandBody:function(){var d=this;function e(){d.$el.children(".dataset-body").replaceWith(d._render_body());d.$el.children(".dataset-body").slideDown(d.fxSpeed,function(){d.expanded=true;d.trigger("body-expanded",d.model)})}e()},collapseBody:function(){var d=this;this.$el.children(".dataset-body").slideUp(d.fxSpeed,function(){d.expanded=false;d.trigger("body-collapsed",d.model.id)})},_render_body_ok:function(){var d=$(_.template(this.templateBody(),this.model.toJSON()));if(this.model.get("deleted")){return d}return d}});return{DatasetCollectionBaseView:c}}); \ No newline at end of file +define(["mvc/history/history-content-base-view","utils/localization"],function(e,b){var c=e.HistoryContentBaseView.extend({className:"dataset hda history-panel-hda",id:function(){return"hdca-"+this.model.get("id")},initialize:function(f){if(f.logger){this.logger=this.model.logger=f.logger}this.log(this+".initialize:",f);this.selectable=f.selectable||false;this.selected=f.selected||false;this.expanded=f.expanded||false},render:function(g){var f=this._buildNewRender();this._queueNewRender(f,g);return this},_buildNewRender:function(){var f=$(c.templates.skeleton(this.model.toJSON()));f.find(".dataset-primary-actions").append(this._render_titleButtons());f.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(f);return f},_queueNewRender:function(g,h){h=(h===undefined)?(true):(h);var f=this;if(h){$(f).queue(function(i){this.$el.fadeOut(f.fxSpeed,i)})}$(f).queue(function(i){this.$el.empty().attr("class",f.className).addClass("state-"+f.model.get("state")).append(g.children());if(this.selectable){this.showSelector(0)}i()});if(h){$(f).queue(function(i){this.$el.fadeIn(f.fxSpeed,i)})}$(f).queue(function(i){this.trigger("rendered",f);if(this.model.inReadyState()){this.trigger("rendered:ready",f)}if(this.draggable){this.draggableOn()}i()})},_render_titleButtons:function(){return[]},_render_body:function(){var g=$('
    Error: unknown state "'+this.model.get("state")+'".
    '),f=this["_render_body_"+this.model.get("state")];if(_.isFunction(f)){g=f.call(this)}this._setUpBehaviors(g);if(this.expanded){g.show()}return g},_setUpBehaviors:function(f){f=f||this.$el;make_popup_menus(f);f.find("[title]").tooltip({placement:"bottom"})},events:{"click .dataset-title-bar":"toggleBodyVisibility","keydown .dataset-title-bar":"toggleBodyVisibility","click .dataset-selector":"toggleSelect"},toggleBodyVisibility:function(i,g){var f=32,h=13;if(i&&(i.type==="keydown")&&!(i.keyCode===f||i.keyCode===h)){return true}var j=this.$el.find(".dataset-body");g=(g===undefined)?(!j.is(":visible")):(g);if(g){this.expandBody()}else{this.collapseBody()}return false},expandBody:function(){var f=this;function g(){f.$el.children(".dataset-body").replaceWith(f._render_body());f.$el.children(".dataset-body").slideDown(f.fxSpeed,function(){f.expanded=true;f.trigger("body-expanded",f.model)})}g()},collapseBody:function(){var f=this;this.$el.children(".dataset-body").slideUp(f.fxSpeed,function(){f.expanded=false;f.trigger("body-collapsed",f.model.id)})},_render_body_ok:function(){var f=$(c.templates.body(this.model.toJSON()));if(this.model.get("deleted")){return f}return f},showSelector:function(){if(this.selected){this.select(null,true)}this.selectable=true;this.trigger("selectable",true,this);this.$(".dataset-primary-actions").hide();this.$(".dataset-selector").show()},hideSelector:function(){this.selectable=false;this.trigger("selectable",false,this);this.$(".dataset-selector").hide();this.$(".dataset-primary-actions").show()},toggleSelector:function(){if(!this.$el.find(".dataset-selector").is(":visible")){this.showSelector()}else{this.hideSelector()}},select:function(f){this.$el.find(".dataset-selector span").removeClass("fa-square-o").addClass("fa-check-square-o");if(!this.selected){this.trigger("selected",this,f);this.selected=true}return false},deselect:function(f){this.$el.find(".dataset-selector span").removeClass("fa-check-square-o").addClass("fa-square-o");if(this.selected){this.trigger("de-selected",this,f);this.selected=false}return false},toggleSelect:function(f){if(this.selected){this.deselect(f)}else{this.select(f)}},toString:function(){var f=(this.model)?(this.model+""):("(no model)");return"HDCABaseView("+f+")"}});var a=_.template(['
    ','
    ',"<% if ( collection.deleted ) { %>",'
    ',b("This collection has been deleted."),"
    ","<% } %>","<% if ( !collection.visible ) { %>",'
    ',b("This collection has been hidden."),"
    ","<% } %>","
    ",'
    ','
    ','
    ','','
    ','<%= collection.hid %> ','<%= collection.name %>',"
    ","
    ",'
    ',"
    "].join(""));var d=_.template(['
    ','
    ',b("A dataset collection."),"
    "].join(""));c.templates={skeleton:function(f){return a({_l:b,collection:f})},body:function(f){return d({_l:b,collection:f})}};return{DatasetCollectionBaseView:c}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/collection/dataset-collection-edit.js b/static/scripts/packed/mvc/collection/dataset-collection-edit.js index 7d0a5173cdf..123091b886f 100644 --- a/static/scripts/packed/mvc/collection/dataset-collection-edit.js +++ b/static/scripts/packed/mvc/collection/dataset-collection-edit.js @@ -1 +1 @@ -define(["mvc/dataset/hda-model","mvc/collection/dataset-collection-base",],function(b,c){var a=c.DatasetCollectionBaseView.extend({initialize:function(d){c.DatasetCollectionBaseView.prototype.initialize.call(this,d)},_render_titleButtons:function(){return c.DatasetCollectionBaseView.prototype._render_titleButtons.call(this).concat([this._render_deleteButton()])},_render_deleteButton:function(){if((this.model.get("state")===b.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===b.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var d=this,e={title:_l("Delete"),classes:"dataset-delete",onclick:function(){d.$el.find(".icon-btn.dataset-delete").trigger("mouseout");d.model["delete"]()}};if(this.model.get("deleted")){e={title:_l("Dataset collection is already deleted"),disabled:true}}e.faIcon="fa-times";return faIconButton(e)}});return{DatasetCollectionEditView:a}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/collection/dataset-collection-base","utils/localization"],function(c,d,b){var a=d.DatasetCollectionBaseView.extend({initialize:function(e){d.DatasetCollectionBaseView.prototype.initialize.call(this,e)},_render_titleButtons:function(){return d.DatasetCollectionBaseView.prototype._render_titleButtons.call(this).concat([this._render_deleteButton()])},_render_deleteButton:function(){if((this.model.get("state")===c.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===c.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var e=this,f={title:b("Delete"),classes:"dataset-delete",onclick:function(){e.$el.find(".icon-btn.dataset-delete").trigger("mouseout");e.model["delete"]()}};if(this.model.get("deleted")){f={title:b("Dataset collection is already deleted"),disabled:true}}f.faIcon="fa-times";return faIconButton(f)},toString:function(){var e=(this.model)?(this.model+""):("(no model)");return"HDCAEditView("+e+")"}});return{DatasetCollectionEditView:a}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/collection/hdca-model.js b/static/scripts/packed/mvc/collection/hdca-model.js new file mode 100644 index 00000000000..fc5e0b6299c --- /dev/null +++ b/static/scripts/packed/mvc/collection/hdca-model.js @@ -0,0 +1 @@ +define(["mvc/history/history-content-base","utils/localization"],function(b,c){var a=b.HistoryContent.extend({defaults:{history_id:null,model_class:"HistoryDatasetCollectionAssociation",history_content_type:"dataset_collection",hid:0,id:null,name:"(unnamed dataset collection)",state:"ok",accessible:true,deleted:false,visible:true,purged:false,tags:[],annotation:""},urls:function(){},inReadyState:function(){return true},searchAttributes:["name"],searchAliases:{title:"name"},toString:function(){var d=this.get("id")||"";if(this.get("name")){d=this.get("hid")+' :"'+this.get("name")+'",'+d}return"HDCA-"+this.get("collection_type")+"("+d+")"}});return{HistoryDatasetCollectionAssociation:a}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/dataset/hda-base.js b/static/scripts/packed/mvc/dataset/hda-base.js index 63be0b182be..db2fb387b44 100644 --- a/static/scripts/packed/mvc/dataset/hda-base.js +++ b/static/scripts/packed/mvc/dataset/hda-base.js @@ -1 +1 @@ -define(["mvc/dataset/hda-model","mvc/base-mvc","mvc/data","utils/localization"],function(e,b,g,d){var h=Backbone.View.extend(b.LoggableMixin).extend({tagName:"div",fxSpeed:"fast",_queueNewRender:function(j,k){k=(k===undefined)?(true):(k);var i=this;if(k){$(i).queue(function(l){this.$el.fadeOut(i.fxSpeed,l)})}$(i).queue(function(l){this.$el.empty().attr("class",i.className).addClass("state-"+i.model.get("state")).append(j.children());if(this.selectable){this.showSelector(0)}l()});if(k){$(i).queue(function(l){this.$el.fadeIn(i.fxSpeed,l)})}$(i).queue(function(l){this.trigger("rendered",i);if(this.model.inReadyState()){this.trigger("rendered:ready",i)}if(this.draggable){this.draggableOn()}l()})},toggleBodyVisibility:function(l,j){var i=32,k=13;if(l&&(l.type==="keydown")&&!(l.keyCode===i||l.keyCode===k)){return true}var m=this.$el.find(".dataset-body");j=(j===undefined)?(!m.is(":visible")):(j);if(j){this.expandBody()}else{this.collapseBody()}return false},showSelector:function(){if(this.selected){this.select(null,true)}this.selectable=true;this.trigger("selectable",true,this);this.$(".dataset-primary-actions").hide();this.$(".dataset-selector").show()},hideSelector:function(){this.selectable=false;this.trigger("selectable",false,this);this.$(".dataset-selector").hide();this.$(".dataset-primary-actions").show()},toggleSelector:function(){if(!this.$el.find(".dataset-selector").is(":visible")){this.showSelector()}else{this.hideSelector()}},select:function(i){this.$el.find(".dataset-selector span").removeClass("fa-square-o").addClass("fa-check-square-o");if(!this.selected){this.trigger("selected",this,i);this.selected=true}return false},deselect:function(i){this.$el.find(".dataset-selector span").removeClass("fa-check-square-o").addClass("fa-square-o");if(this.selected){this.trigger("de-selected",this,i);this.selected=false}return false},toggleSelect:function(i){if(this.selected){this.deselect(i)}else{this.select(i)}}});var c=h.extend({className:"dataset hda history-panel-hda",id:function(){return"hda-"+this.model.get("id")},initialize:function(i){if(i.logger){this.logger=this.model.logger=i.logger}this.log(this+".initialize:",i);this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton];this.linkTarget=i.linkTarget||"_blank";this.selectable=i.selectable||false;this.selected=i.selected||false;this.expanded=i.expanded||false;this.draggable=i.draggable||false;this._setUpListeners()},_setUpListeners:function(){this.model.on("change",function(j,i){if(this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()){this.model.fetch()}else{this.render()}},this)},render:function(j){this.$el.find("[title]").tooltip("destroy");this.urls=this.model.urls();var i=this._buildNewRender();this._queueNewRender(i,j);return this},_buildNewRender:function(){var i=$(c.templates.skeleton(this.model.toJSON()));i.find(".dataset-primary-actions").append(this._render_titleButtons());i.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(i);return i},_setUpBehaviors:function(i){i=i||this.$el;make_popup_menus(i);i.find("[title]").tooltip({placement:"bottom"})},_render_titleButtons:function(){return[this._render_displayButton()]},_render_displayButton:function(){if((this.model.get("state")===e.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(this.model.get("state")===e.HistoryDatasetAssociation.STATES.DISCARDED)||(!this.model.get("accessible"))){return null}var j={target:this.linkTarget,classes:"dataset-display"};if(this.model.get("purged")){j.disabled=true;j.title=d("Cannot display datasets removed from disk")}else{if(this.model.get("state")===e.HistoryDatasetAssociation.STATES.UPLOAD){j.disabled=true;j.title=d("This dataset must finish uploading before it can be viewed")}else{if(this.model.get("state")===e.HistoryDatasetAssociation.STATES.NEW){j.disabled=true;j.title=d("This dataset is not yet viewable")}else{j.title=d("View data");j.href=this.urls.display;var i=this;j.onclick=function(k){if(Galaxy.frame&&Galaxy.frame.active){Galaxy.frame.add({title:"Data Viewer: "+i.model.get("name"),type:"other",content:function(l){var m=new g.TabularDataset({id:i.model.get("id")});$.when(m.fetch()).then(function(){g.createTabularDatasetChunkedView({model:m,parent_elt:l,embedded:true,height:"100%"})})}});k.preventDefault()}}}}}j.faIcon="fa-eye";return faIconButton(j)},_render_downloadButton:function(){if(this.model.get("purged")||!this.model.hasData()){return null}var j=this.urls,k=this.model.get("meta_files");if(_.isEmpty(k)){return $(['','',""].join(""))}var l="dataset-"+this.model.get("id")+"-popup",i=['
    ','',d("Download dataset"),"",""+d("Additional files")+"",_.map(k,function(m){return['',d("Download")," ",m.file_type,""].join("")}).join("\n"),"
    ",'
    ','','','','',"","
    "].join("\n");return $(i)},_render_showParamsButton:function(){return faIconButton({title:d("View details"),classes:"dataset-params-btn",href:this.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle"})},_render_body:function(){var j=$('
    Error: unknown dataset state "'+this.model.get("state")+'".
    '),i=this["_render_body_"+this.model.get("state")];if(_.isFunction(i)){j=i.call(this)}this._setUpBehaviors(j);if(this.expanded){j.show()}return j},_render_stateBodyHelper:function(i,l){l=l||[];var j=this,k=$(c.templates.body(_.extend(this.model.toJSON(),{body:i})));k.find(".dataset-actions .left").append(_.map(l,function(m){return m.call(j)}));return k},_render_body_new:function(){return this._render_stateBodyHelper("
    "+d("This is a new dataset and not all of its data are available yet")+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_noPermission:function(){return this._render_stateBodyHelper("
    "+d("You do not have permission to view this dataset")+"
    ")},_render_body_discarded:function(){return this._render_stateBodyHelper("
    "+d("The job creating this dataset was cancelled before completion")+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_queued:function(){return this._render_stateBodyHelper("
    "+d("This job is waiting to run")+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_upload:function(){return this._render_stateBodyHelper("
    "+d("This dataset is currently uploading")+"
    ")},_render_body_setting_metadata:function(){return this._render_stateBodyHelper("
    "+d("Metadata is being auto-detected")+"
    ")},_render_body_running:function(){return this._render_stateBodyHelper("
    "+d("This job is currently running")+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_paused:function(){return this._render_stateBodyHelper("
    "+d('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume')+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_error:function(){var i=['',d("An error occurred with this dataset"),":",'
    ',$.trim(this.model.get("misc_info")),"
    "].join("");if(!this.model.get("purged")){i="
    "+this.model.get("misc_blurb")+"
    "+i}return this._render_stateBodyHelper(i,[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers))},_render_body_empty:function(){return this._render_stateBodyHelper("
    "+d("No data")+": "+this.model.get("misc_blurb")+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_failed_metadata:function(){var i=$('
    ').append($("").text(d("An error occurred setting the metadata for this dataset"))),j=this._render_body_ok();j.prepend(i);return j},_render_body_ok:function(){var i=this,k=$(c.templates.body(this.model.toJSON())),j=[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers);k.find(".dataset-actions .left").append(_.map(j,function(l){return l.call(i)}));if(this.model.isDeletedOrPurged()){return k}return k},events:{"click .dataset-title-bar":"toggleBodyVisibility","keydown .dataset-title-bar":"toggleBodyVisibility","click .dataset-selector":"toggleSelect"},expandBody:function(){var i=this;function j(){i.$el.children(".dataset-body").replaceWith(i._render_body());i.$el.children(".dataset-body").slideDown(i.fxSpeed,function(){i.expanded=true;i.trigger("body-expanded",i.model)})}if(this.model.inReadyState()&&!this.model.hasDetails()){this.model.fetch({silent:true}).always(function(k){i.urls=i.model.urls();j()})}else{j()}},collapseBody:function(){var i=this;this.$el.children(".dataset-body").slideUp(i.fxSpeed,function(){i.expanded=false;i.trigger("body-collapsed",i.model.id)})},draggableOn:function(){this.draggable=true;this.dragStartHandler=_.bind(this._dragStartHandler,this);this.dragEndHandler=_.bind(this._dragEndHandler,this);var i=this.$el.find(".dataset-title-bar").attr("draggable",true).get(0);i.addEventListener("dragstart",this.dragStartHandler,false);i.addEventListener("dragend",this.dragEndHandler,false)},draggableOff:function(){this.draggable=false;var i=this.$el.find(".dataset-title-bar").attr("draggable",false).get(0);i.removeEventListener("dragstart",this.dragStartHandler,false);i.removeEventListener("dragend",this.dragEndHandler,false)},toggleDraggable:function(){if(this.draggable){this.draggableOff()}else{this.draggableOn()}},_dragStartHandler:function(i){this.trigger("dragstart",this);i.dataTransfer.effectAllowed="move";i.dataTransfer.setData("text",JSON.stringify(this.model.toJSON()));return false},_dragEndHandler:function(i){this.trigger("dragend",this);return false},remove:function(j){var i=this;this.$el.fadeOut(i.fxSpeed,function(){i.$el.remove();i.off();if(j){j()}})},toString:function(){var i=(this.model)?(this.model+""):("(no model)");return"HDABaseView("+i+")"}});var a=_.template(['
    ','
    ',"<% if( hda.error ){ %>",'
    ',d("There was an error getting the data for this dataset"),":<%- hda.error %>","
    ","<% } %>","<% if( hda.deleted ){ %>","<% if( hda.purged ){ %>",'
    ',d("This dataset has been deleted and removed from disk")+".","
    ","<% } else { %>",'
    ',d("This dataset has been deleted")+".","
    ","<% } %>","<% } %>","<% if( !hda.visible ){ %>",'
    ',d("This dataset has been hidden")+".","
    ","<% } %>","
    ",'
    ','',"
    ",'
    ','
    ','','
    ','<%- hda.hid %> ','<%- hda.name %>',"
    ","
    ",'
    ',"
    "].join(""));var f=_.template(['
    ',"<% if( hda.body ){ %>",'
    ',"<%= hda.body %>","
    ",'
    ','
    ','
    ',"
    ","<% } else { %>",'
    ',"<% if( hda.misc_blurb ){ %>",'
    ','<%- hda.misc_blurb %>',"
    ","<% } %>","<% if( hda.data_type ){ %>",'
    ','",'<%- hda.data_type %>',"
    ","<% } %>","<% if( hda.metadata_dbkey ){ %>",'
    ','",'',"<%- hda.metadata_dbkey %>","","
    ","<% } %>","<% if( hda.misc_info ){ %>",'
    ','<%- hda.misc_info %>',"
    ","<% } %>","
    ",'
    ','
    ','
    ',"
    ","<% if( !hda.deleted ){ %>",'
    ','
    ','
    ',"<% _.each( hda.display_apps, function( app ){ %>",'
    ','<%- app.label %> ','',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>","","
    ","<% }); %>","<% _.each( hda.display_types, function( app ){ %>",'
    ','<%- app.label %> ','',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>","","
    ","<% }); %>","
    ",'
    ',"<% if( hda.peek ){ %>",'
    <%= hda.peek %>
    ',"<% } %>","
    ","<% } %>","<% } %>","
    "].join(""));c.templates={skeleton:function(i){return a({_l:d,hda:i})},body:function(i){return f({_l:d,hda:i})}};return{HistoryContentBaseView:h,HDABaseView:c}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/history/history-content-base-view","mvc/data","utils/localization"],function(d,g,f,c){var b=g.HistoryContentBaseView.extend({tagName:"div",className:"dataset hda history-panel-hda",id:function(){return"hda-"+this.model.get("id")},fxSpeed:"fast",initialize:function(h){if(h.logger){this.logger=this.model.logger=h.logger}this.log(this+".initialize:",h);this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton];this.linkTarget=h.linkTarget||"_blank";this.selectable=h.selectable||false;this.selected=h.selected||false;this.expanded=h.expanded||false;this.draggable=h.draggable||false;this._setUpListeners()},_setUpListeners:function(){this.model.on("change",function(i,h){if(this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()){this.model.fetch()}else{this.render()}},this)},render:function(i){this.$el.find("[title]").tooltip("destroy");this.urls=this.model.urls();var h=this._buildNewRender();this._queueNewRender(h,i);return this},_buildNewRender:function(){var h=$(b.templates.skeleton(this.model.toJSON()));h.find(".dataset-primary-actions").append(this._render_titleButtons());h.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(h);return h},_queueNewRender:function(i,j){j=(j===undefined)?(true):(j);var h=this;if(j){$(h).queue(function(k){this.$el.fadeOut(h.fxSpeed,k)})}$(h).queue(function(k){this.$el.empty().attr("class",h.className).addClass("state-"+h.model.get("state")).append(i.children());if(this.selectable){this.showSelector(0)}k()});if(j){$(h).queue(function(k){this.$el.fadeIn(h.fxSpeed,k)})}$(h).queue(function(k){this.trigger("rendered",h);if(this.model.inReadyState()){this.trigger("rendered:ready",h)}if(this.draggable){this.draggableOn()}k()})},_setUpBehaviors:function(h){h=h||this.$el;make_popup_menus(h);h.find("[title]").tooltip({placement:"bottom"})},_render_titleButtons:function(){return[this._render_displayButton()]},_render_displayButton:function(){if((this.model.get("state")===d.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(this.model.get("state")===d.HistoryDatasetAssociation.STATES.DISCARDED)||(!this.model.get("accessible"))){return null}var i={target:this.linkTarget,classes:"dataset-display"};if(this.model.get("purged")){i.disabled=true;i.title=c("Cannot display datasets removed from disk")}else{if(this.model.get("state")===d.HistoryDatasetAssociation.STATES.UPLOAD){i.disabled=true;i.title=c("This dataset must finish uploading before it can be viewed")}else{if(this.model.get("state")===d.HistoryDatasetAssociation.STATES.NEW){i.disabled=true;i.title=c("This dataset is not yet viewable")}else{i.title=c("View data");i.href=this.urls.display;var h=this;i.onclick=function(j){if(Galaxy.frame&&Galaxy.frame.active){Galaxy.frame.add({title:"Data Viewer: "+h.model.get("name"),type:"other",content:function(k){var l=new f.TabularDataset({id:h.model.get("id")});$.when(l.fetch()).then(function(){f.createTabularDatasetChunkedView({model:l,parent_elt:k,embedded:true,height:"100%"})})}});j.preventDefault()}}}}}i.faIcon="fa-eye";return faIconButton(i)},_render_downloadButton:function(){if(this.model.get("purged")||!this.model.hasData()){return null}var i=this.urls,j=this.model.get("meta_files");if(_.isEmpty(j)){return $(['','',""].join(""))}var k="dataset-"+this.model.get("id")+"-popup",h=['
    ','',c("Download dataset"),"",""+c("Additional files")+"",_.map(j,function(l){return['',c("Download")," ",l.file_type,""].join("")}).join("\n"),"
    ",'
    ','','','','',"","
    "].join("\n");return $(h)},_render_showParamsButton:function(){return faIconButton({title:c("View details"),classes:"dataset-params-btn",href:this.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle"})},_render_body:function(){var i=$('
    Error: unknown dataset state "'+this.model.get("state")+'".
    '),h=this["_render_body_"+this.model.get("state")];if(_.isFunction(h)){i=h.call(this)}this._setUpBehaviors(i);if(this.expanded){i.show()}return i},_render_stateBodyHelper:function(h,k){k=k||[];var i=this,j=$(b.templates.body(_.extend(this.model.toJSON(),{body:h})));j.find(".dataset-actions .left").append(_.map(k,function(l){return l.call(i)}));return j},_render_body_new:function(){return this._render_stateBodyHelper("
    "+c("This is a new dataset and not all of its data are available yet")+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_noPermission:function(){return this._render_stateBodyHelper("
    "+c("You do not have permission to view this dataset")+"
    ")},_render_body_discarded:function(){return this._render_stateBodyHelper("
    "+c("The job creating this dataset was cancelled before completion")+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_queued:function(){return this._render_stateBodyHelper("
    "+c("This job is waiting to run")+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_upload:function(){return this._render_stateBodyHelper("
    "+c("This dataset is currently uploading")+"
    ")},_render_body_setting_metadata:function(){return this._render_stateBodyHelper("
    "+c("Metadata is being auto-detected")+"
    ")},_render_body_running:function(){return this._render_stateBodyHelper("
    "+c("This job is currently running")+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_paused:function(){return this._render_stateBodyHelper("
    "+c('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume')+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_error:function(){var h=['',c("An error occurred with this dataset"),":",'
    ',$.trim(this.model.get("misc_info")),"
    "].join("");if(!this.model.get("purged")){h="
    "+this.model.get("misc_blurb")+"
    "+h}return this._render_stateBodyHelper(h,[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers))},_render_body_empty:function(){return this._render_stateBodyHelper("
    "+c("No data")+": "+this.model.get("misc_blurb")+"
    ",this.defaultPrimaryActionButtonRenderers)},_render_body_failed_metadata:function(){var h=$('
    ').append($("").text(c("An error occurred setting the metadata for this dataset"))),i=this._render_body_ok();i.prepend(h);return i},_render_body_ok:function(){var h=this,j=$(b.templates.body(this.model.toJSON())),i=[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers);j.find(".dataset-actions .left").append(_.map(i,function(k){return k.call(h)}));if(this.model.isDeletedOrPurged()){return j}return j},events:{"click .dataset-title-bar":"toggleBodyVisibility","keydown .dataset-title-bar":"toggleBodyVisibility","click .dataset-selector":"toggleSelect"},toggleBodyVisibility:function(k,i){var h=32,j=13;if(k&&(k.type==="keydown")&&!(k.keyCode===h||k.keyCode===j)){return true}var l=this.$el.find(".dataset-body");i=(i===undefined)?(!l.is(":visible")):(i);if(i){this.expandBody()}else{this.collapseBody()}return false},expandBody:function(){var h=this;function i(){h.$el.children(".dataset-body").replaceWith(h._render_body());h.$el.children(".dataset-body").slideDown(h.fxSpeed,function(){h.expanded=true;h.trigger("body-expanded",h.model)})}if(this.model.inReadyState()&&!this.model.hasDetails()){this.model.fetch({silent:true}).always(function(j){h.urls=h.model.urls();i()})}else{i()}},collapseBody:function(){var h=this;this.$el.children(".dataset-body").slideUp(h.fxSpeed,function(){h.expanded=false;h.trigger("body-collapsed",h.model.id)})},showSelector:function(){if(this.selected){this.select(null,true)}this.selectable=true;this.trigger("selectable",true,this);this.$(".dataset-primary-actions").hide();this.$(".dataset-selector").show()},hideSelector:function(){this.selectable=false;this.trigger("selectable",false,this);this.$(".dataset-selector").hide();this.$(".dataset-primary-actions").show()},toggleSelector:function(){if(!this.$el.find(".dataset-selector").is(":visible")){this.showSelector()}else{this.hideSelector()}},select:function(h){this.$el.find(".dataset-selector span").removeClass("fa-square-o").addClass("fa-check-square-o");if(!this.selected){this.trigger("selected",this,h);this.selected=true}return false},deselect:function(h){this.$el.find(".dataset-selector span").removeClass("fa-check-square-o").addClass("fa-square-o");if(this.selected){this.trigger("de-selected",this,h);this.selected=false}return false},toggleSelect:function(h){if(this.selected){this.deselect(h)}else{this.select(h)}},draggableOn:function(){this.draggable=true;this.dragStartHandler=_.bind(this._dragStartHandler,this);this.dragEndHandler=_.bind(this._dragEndHandler,this);var h=this.$el.find(".dataset-title-bar").attr("draggable",true).get(0);h.addEventListener("dragstart",this.dragStartHandler,false);h.addEventListener("dragend",this.dragEndHandler,false)},draggableOff:function(){this.draggable=false;var h=this.$el.find(".dataset-title-bar").attr("draggable",false).get(0);h.removeEventListener("dragstart",this.dragStartHandler,false);h.removeEventListener("dragend",this.dragEndHandler,false)},toggleDraggable:function(){if(this.draggable){this.draggableOff()}else{this.draggableOn()}},_dragStartHandler:function(h){this.trigger("dragstart",this);h.dataTransfer.effectAllowed="move";h.dataTransfer.setData("text",JSON.stringify(this.model.toJSON()));return false},_dragEndHandler:function(h){this.trigger("dragend",this);return false},remove:function(i){var h=this;this.$el.fadeOut(h.fxSpeed,function(){h.$el.remove();h.off();if(i){i()}})},toString:function(){var h=(this.model)?(this.model+""):("(no model)");return"HDABaseView("+h+")"}});var a=_.template(['
    ','
    ',"<% if( hda.error ){ %>",'
    ',c("There was an error getting the data for this dataset"),":<%- hda.error %>","
    ","<% } %>","<% if( hda.deleted ){ %>","<% if( hda.purged ){ %>",'
    ',c("This dataset has been deleted and removed from disk")+".","
    ","<% } else { %>",'
    ',c("This dataset has been deleted")+".","
    ","<% } %>","<% } %>","<% if( !hda.visible ){ %>",'
    ',c("This dataset has been hidden")+".","
    ","<% } %>","
    ",'
    ','',"
    ",'
    ','
    ','','
    ','<%- hda.hid %> ','<%- hda.name %>',"
    ","
    ",'
    ',"
    "].join(""));var e=_.template(['
    ',"<% if( hda.body ){ %>",'
    ',"<%= hda.body %>","
    ",'
    ','
    ','
    ',"
    ","<% } else { %>",'
    ',"<% if( hda.misc_blurb ){ %>",'
    ','<%- hda.misc_blurb %>',"
    ","<% } %>","<% if( hda.data_type ){ %>",'
    ','",'<%- hda.data_type %>',"
    ","<% } %>","<% if( hda.metadata_dbkey ){ %>",'
    ','",'',"<%- hda.metadata_dbkey %>","","
    ","<% } %>","<% if( hda.misc_info ){ %>",'
    ','<%- hda.misc_info %>',"
    ","<% } %>","
    ",'
    ','
    ','
    ',"
    ","<% if( !hda.deleted ){ %>",'
    ','
    ','
    ',"<% _.each( hda.display_apps, function( app ){ %>",'
    ','<%- app.label %> ','',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>","","
    ","<% }); %>","<% _.each( hda.display_types, function( app ){ %>",'
    ','<%- app.label %> ','',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>","","
    ","<% }); %>","
    ",'
    ',"<% if( hda.peek ){ %>",'
    <%= hda.peek %>
    ',"<% } %>","
    ","<% } %>","<% } %>","
    "].join(""));b.templates={skeleton:function(h){return a({_l:c,hda:h})},body:function(h){return e({_l:c,hda:h})}};return{HDABaseView:b}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/dataset/hda-edit.js b/static/scripts/packed/mvc/dataset/hda-edit.js index c84be81f74c..525b4b0155d 100644 --- a/static/scripts/packed/mvc/dataset/hda-edit.js +++ b/static/scripts/packed/mvc/dataset/hda-edit.js @@ -1 +1 @@ -define(["mvc/dataset/hda-model","mvc/dataset/hda-base","mvc/tags","mvc/annotations","utils/localization"],function(g,b,a,e,f){var h=b.HDABaseView.extend({initialize:function(i){b.HDABaseView.prototype.initialize.call(this,i);this.hasUser=i.hasUser;this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton,this._render_rerunButton];this.purgeAllowed=i.purgeAllowed||false;this.tagsEditorShown=i.tagsEditorShown||false;this.annotationEditorShown=i.annotationEditorShown||false},_render_titleButtons:function(){return b.HDABaseView.prototype._render_titleButtons.call(this).concat([this._render_editButton(),this._render_deleteButton()])},_render_editButton:function(){if((this.model.get("state")===g.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===g.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var k=this.model.get("purged"),i=this.model.get("deleted"),j={title:f("Edit attributes"),href:this.urls.edit,target:this.linkTarget,classes:"dataset-edit"};if(i||k){j.disabled=true;if(k){j.title=f("Cannot edit attributes of datasets removed from disk")}else{if(i){j.title=f("Undelete dataset to edit attributes")}}}else{if(this.model.get("state")===g.HistoryDatasetAssociation.STATES.UPLOAD){j.disabled=true;j.title=f("This dataset must finish uploading before it can be edited")}else{if(this.model.get("state")===g.HistoryDatasetAssociation.STATES.NEW){j.disabled=true;j.title=f("This dataset is not yet editable")}}}j.faIcon="fa-pencil";return faIconButton(j)},_render_deleteButton:function(){if((this.model.get("state")===g.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var i=this,j={title:f("Delete"),classes:"dataset-delete",onclick:function(){i.$el.find(".icon-btn.dataset-delete").trigger("mouseout");i.model["delete"]()}};if(this.model.get("deleted")||this.model.get("purged")){j={title:f("Dataset is already deleted"),disabled:true}}j.faIcon="fa-times";return faIconButton(j)},_render_errButton:function(){if(this.model.get("state")!==g.HistoryDatasetAssociation.STATES.ERROR){return null}return faIconButton({title:f("View or report this error"),href:this.urls.report_error,classes:"dataset-report-error-btn",target:this.linkTarget,faIcon:"fa-bug"})},_render_rerunButton:function(){return faIconButton({title:f("Run this job again"),href:this.urls.rerun,classes:"dataset-rerun-btn",target:this.linkTarget,faIcon:"fa-refresh"})},_render_visualizationsButton:function(){var i=this.model.get("visualizations");if((!this.hasUser)||(!this.model.hasData())||(_.isEmpty(i))){return null}if(_.isObject(i[0])){return this._render_visualizationsFrameworkButton(i)}if(!this.urls.visualization){return null}var k=this.model.get("dbkey"),o=this.urls.visualization,l={},p={dataset_id:this.model.get("id"),hda_ldda:"hda"};if(k){p.dbkey=k}var j=faIconButton({title:f("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});function m(q){if(q==="trackster"){return c(o,p,k)}return function(){Galaxy.frame.add({title:"Visualization",type:"url",content:o+"/"+q+"?"+$.param(p)})}}function n(q){return q.charAt(0).toUpperCase()+q.slice(1)}if(i.length===1){j.attr("data-original-title",f("Visualize in")+" "+f(n(i[0])));j.click(m(i[0]))}else{_.each(i,function(q){l[f(n(q))]=m(q)});make_popupmenu(j,l)}return j},_render_visualizationsFrameworkButton:function(i){if(!(this.model.hasData())||!(i&&!_.isEmpty(i))){return null}var k=faIconButton({title:f("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});if(i.length===1){var j=i[0];k.attr("data-original-title",f("Visualize in")+" "+j.html);k.attr("href",j.href)}else{var l=[];_.each(i,function(m){m.func=function(n){if(Galaxy.frame&&Galaxy.frame.active){Galaxy.frame.add({title:"Visualization",type:"url",content:m.href});n.preventDefault();return false}return true};l.push(m);return false});PopupMenu.create(k,l)}return k},_buildNewRender:function(){var i=b.HDABaseView.prototype._buildNewRender.call(this);var j="
    ",l=".",k=function(m,n){return['',m,""].join("")};i.find(".dataset-deleted-msg").append([j,k(f("Undelete it"),"dataset-undelete"),l].join(""));if(this.purgeAllowed){i.find(".dataset-deleted-msg").append([j,k(f("Permanently remove it from disk"),"dataset-purge"),l].join(""))}i.find(".dataset-hidden-msg").append([j,k(f("Unhide it"),"dataset-unhide"),l].join(""));return i},_render_body_failed_metadata:function(){var j=$("").attr({href:this.urls.edit,target:this.linkTarget}).text(f("set it manually or retry auto-detection")),i=$("").text(". "+f("You may be able to")+" ").append(j),k=b.HDABaseView.prototype._render_body_failed_metadata.call(this);k.find(".warningmessagesmall strong").append(i);return k},_render_body_error:function(){var i=b.HDABaseView.prototype._render_body_error.call(this);i.find(".dataset-actions .left").prepend(this._render_errButton());return i},_render_body_ok:function(){var i=b.HDABaseView.prototype._render_body_ok.call(this);if(this.model.isDeletedOrPurged()){return i}this.makeDbkeyEditLink(i);if(this.hasUser){i.find(".dataset-actions .left").append(this._render_visualizationsButton());this._renderTags(i);this._renderAnnotation(i)}return i},_renderTags:function(i){var j=this;this.tagsEditor=new a.TagsEditor({model:this.model,el:i.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.tagsEditorShown=true},onhide:function(){j.tagsEditorShown=false},$activator:faIconButton({title:f("Edit dataset tags"),classes:"dataset-tag-btn",faIcon:"fa-tags"}).appendTo(i.find(".dataset-actions .right"))});if(this.tagsEditorShown){this.tagsEditor.toggle(true)}},_renderAnnotation:function(i){var j=this;this.annotationEditor=new e.AnnotationEditor({model:this.model,el:i.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.annotationEditorShown=true},onhide:function(){j.annotationEditorShown=false},$activator:faIconButton({title:f("Edit dataset annotation"),classes:"dataset-annotate-btn",faIcon:"fa-comment"}).appendTo(i.find(".dataset-actions .right"))});if(this.annotationEditorShown){this.annotationEditor.toggle(true)}},makeDbkeyEditLink:function(j){if(this.model.get("metadata_dbkey")==="?"&&!this.model.isDeletedOrPurged()){var i=$('?').attr("href",this.urls.edit).attr("target",this.linkTarget);j.find(".dataset-dbkey .value").replaceWith(i)}},events:_.extend(_.clone(b.HDABaseView.prototype.events),{"click .dataset-undelete":function(i){this.model.undelete();return false},"click .dataset-unhide":function(i){this.model.unhide();return false},"click .dataset-purge":"confirmPurge"}),confirmPurge:function d(i){this.model.purge();return false},toString:function(){var i=(this.model)?(this.model+""):("(no model)");return"HDAView("+i+")"}});function c(i,k,j){return function(){var l={};if(j){l["f-dbkey"]=j}$.ajax({url:i+"/list_tracks?"+$.param(l),dataType:"html",error:function(){alert(("Could not add this dataset to browser")+".")},success:function(m){var n=window.parent;n.Galaxy.modal.show({title:"View Data in a New or Saved Visualization",buttons:{Cancel:function(){n.Galaxy.modal.hide()},"View in saved visualization":function(){n.Galaxy.modal.show({title:"Add Data to Saved Visualization",body:m,buttons:{Cancel:function(){n.Galaxy.modal.hide()},"Add to visualization":function(){$(n.document).find("input[name=id]:checked").each(function(){n.Galaxy.modal.hide();var o=$(this).val();k.id=o;n.Galaxy.frame.add({title:"Trackster",type:"url",content:i+"/trackster?"+$.param(k)})})}}})},"View in new visualization":function(){n.Galaxy.modal.hide();var o=i+"/trackster?"+$.param(k);n.Galaxy.frame.add({title:"Trackster",type:"url",content:o})}}})}});return false}}return{HDAEditView:h}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/dataset/hda-base","mvc/tags","mvc/annotations","utils/localization"],function(g,b,a,e,f){var h=b.HDABaseView.extend({initialize:function(i){b.HDABaseView.prototype.initialize.call(this,i);this.hasUser=i.hasUser;this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton,this._render_rerunButton];this.purgeAllowed=i.purgeAllowed||false;this.tagsEditorShown=i.tagsEditorShown||false;this.annotationEditorShown=i.annotationEditorShown||false},_render_titleButtons:function(){return b.HDABaseView.prototype._render_titleButtons.call(this).concat([this._render_editButton(),this._render_deleteButton()])},_render_editButton:function(){if((this.model.get("state")===g.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===g.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var k=this.model.get("purged"),i=this.model.get("deleted"),j={title:f("Edit attributes"),href:this.urls.edit,target:this.linkTarget,classes:"dataset-edit"};if(i||k){j.disabled=true;if(k){j.title=f("Cannot edit attributes of datasets removed from disk")}else{if(i){j.title=f("Undelete dataset to edit attributes")}}}else{if(this.model.get("state")===g.HistoryDatasetAssociation.STATES.UPLOAD){j.disabled=true;j.title=f("This dataset must finish uploading before it can be edited")}else{if(this.model.get("state")===g.HistoryDatasetAssociation.STATES.NEW){j.disabled=true;j.title=f("This dataset is not yet editable")}}}j.faIcon="fa-pencil";return faIconButton(j)},_render_deleteButton:function(){if((this.model.get("state")===g.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var i=this,j={title:f("Delete"),classes:"dataset-delete",onclick:function(){i.$el.find(".icon-btn.dataset-delete").trigger("mouseout");i.model["delete"]()}};if(this.model.get("deleted")||this.model.get("purged")){j={title:f("Dataset is already deleted"),disabled:true}}j.faIcon="fa-times";return faIconButton(j)},_render_errButton:function(){if(this.model.get("state")!==g.HistoryDatasetAssociation.STATES.ERROR){return null}return faIconButton({title:f("View or report this error"),href:this.urls.report_error,classes:"dataset-report-error-btn",target:this.linkTarget,faIcon:"fa-bug"})},_render_rerunButton:function(){return faIconButton({title:f("Run this job again"),href:this.urls.rerun,classes:"dataset-rerun-btn",target:this.linkTarget,faIcon:"fa-refresh"})},_render_visualizationsButton:function(){var i=this.model.get("visualizations");if((!this.hasUser)||(!this.model.hasData())||(_.isEmpty(i))){return null}if(_.isObject(i[0])){return this._render_visualizationsFrameworkButton(i)}if(!this.urls.visualization){return null}var k=this.model.get("dbkey"),o=this.urls.visualization,l={},p={dataset_id:this.model.get("id"),hda_ldda:"hda"};if(k){p.dbkey=k}var j=faIconButton({title:f("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});function m(q){if(q==="trackster"){return c(o,p,k)}return function(){Galaxy.frame.add({title:"Visualization",type:"url",content:o+"/"+q+"?"+$.param(p)})}}function n(q){return q.charAt(0).toUpperCase()+q.slice(1)}if(i.length===1){j.attr("data-original-title",f("Visualize in")+" "+f(n(i[0])));j.click(m(i[0]))}else{_.each(i,function(q){l[f(n(q))]=m(q)});make_popupmenu(j,l)}return j},_render_visualizationsFrameworkButton:function(i){if(!(this.model.hasData())||!(i&&!_.isEmpty(i))){return null}var k=faIconButton({title:f("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});if(i.length===1){var j=i[0];k.attr("data-original-title",f("Visualize in")+" "+j.html);k.attr("href",j.href)}else{var l=[];_.each(i,function(m){m.func=function(n){if(Galaxy.frame&&Galaxy.frame.active){Galaxy.frame.add({title:"Visualization",type:"url",content:m.href});n.preventDefault();return false}return true};l.push(m);return false});PopupMenu.create(k,l)}return k},_buildNewRender:function(){var i=b.HDABaseView.prototype._buildNewRender.call(this);var j="
    ",l=".",k=function(m,n){return['',m,""].join("")};i.find(".dataset-deleted-msg").append([j,k(f("Undelete it"),"dataset-undelete"),l].join(""));if(this.purgeAllowed){i.find(".dataset-deleted-msg").append([j,k(f("Permanently remove it from disk"),"dataset-purge"),l].join(""))}i.find(".dataset-hidden-msg").append([j,k(f("Unhide it"),"dataset-unhide"),l].join(""));return i},_render_body_failed_metadata:function(){var j=$("").attr({href:this.urls.edit,target:this.linkTarget}).text(f("set it manually or retry auto-detection")),i=$("").text(". "+f("You may be able to")+" ").append(j),k=b.HDABaseView.prototype._render_body_failed_metadata.call(this);k.find(".warningmessagesmall strong").append(i);return k},_render_body_error:function(){var i=b.HDABaseView.prototype._render_body_error.call(this);i.find(".dataset-actions .left").prepend(this._render_errButton());return i},_render_body_ok:function(){var i=b.HDABaseView.prototype._render_body_ok.call(this);if(this.model.isDeletedOrPurged()){return i}this.makeDbkeyEditLink(i);if(this.hasUser){i.find(".dataset-actions .left").append(this._render_visualizationsButton());this._renderTags(i);this._renderAnnotation(i)}return i},_renderTags:function(i){var j=this;this.tagsEditor=new a.TagsEditor({model:this.model,el:i.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.tagsEditorShown=true},onhide:function(){j.tagsEditorShown=false},$activator:faIconButton({title:f("Edit dataset tags"),classes:"dataset-tag-btn",faIcon:"fa-tags"}).appendTo(i.find(".dataset-actions .right"))});if(this.tagsEditorShown){this.tagsEditor.toggle(true)}},_renderAnnotation:function(i){var j=this;this.annotationEditor=new e.AnnotationEditor({model:this.model,el:i.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.annotationEditorShown=true},onhide:function(){j.annotationEditorShown=false},$activator:faIconButton({title:f("Edit dataset annotation"),classes:"dataset-annotate-btn",faIcon:"fa-comment"}).appendTo(i.find(".dataset-actions .right"))});if(this.annotationEditorShown){this.annotationEditor.toggle(true)}},makeDbkeyEditLink:function(j){if(this.model.get("metadata_dbkey")==="?"&&!this.model.isDeletedOrPurged()){var i=$('?').attr("href",this.urls.edit).attr("target",this.linkTarget);j.find(".dataset-dbkey .value").replaceWith(i)}},events:_.extend(_.clone(b.HDABaseView.prototype.events),{"click .dataset-undelete":function(i){this.model.undelete();return false},"click .dataset-unhide":function(i){this.model.unhide();return false},"click .dataset-purge":"confirmPurge"}),confirmPurge:function d(i){this.model.purge();return false},toString:function(){var i=(this.model)?(this.model+""):("(no model)");return"HDAEditView("+i+")"}});function c(i,k,j){return function(){var l={};if(j){l["f-dbkey"]=j}$.ajax({url:i+"/list_tracks?"+$.param(l),dataType:"html",error:function(){alert(("Could not add this dataset to browser")+".")},success:function(m){var n=window.parent;n.Galaxy.modal.show({title:"View Data in a New or Saved Visualization",buttons:{Cancel:function(){n.Galaxy.modal.hide()},"View in saved visualization":function(){n.Galaxy.modal.show({title:"Add Data to Saved Visualization",body:m,buttons:{Cancel:function(){n.Galaxy.modal.hide()},"Add to visualization":function(){$(n.document).find("input[name=id]:checked").each(function(){n.Galaxy.modal.hide();var o=$(this).val();k.id=o;n.Galaxy.frame.add({title:"Trackster",type:"url",content:i+"/trackster?"+$.param(k)})})}}})},"View in new visualization":function(){n.Galaxy.modal.hide();var o=i+"/trackster?"+$.param(k);n.Galaxy.frame.add({title:"Trackster",type:"url",content:o})}}})}});return false}}return{HDAEditView:h}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/dataset/hda-model.js b/static/scripts/packed/mvc/dataset/hda-model.js index 44500b2b663..42b144ca648 100644 --- a/static/scripts/packed/mvc/dataset/hda-model.js +++ b/static/scripts/packed/mvc/dataset/hda-model.js @@ -1 +1 @@ -define(["mvc/base-mvc","utils/localization"],function(e,c){var a=Backbone.Model.extend(e.LoggableMixin).extend({idAttribute:"type_id",urlRoot:galaxy_config.root+"api/histories/",constructor:function(o,n){o.type_id=a.typeIdStr(o.history_content_type,o.id);Backbone.Model.apply(this,arguments)},initialize:function(o,n){this.on("change:id",this._createTypeId)},url:function(){return this.urlRoot+this.get("history_id")+"/contents/"+this.get("history_content_type")+"s/"+this.get("id")},hidden:function(){return !this.get("visible")},"delete":function f(n){if(this.get("deleted")){return jQuery.when()}return this.save({deleted:true},n)},undelete:function j(n){if(!this.get("deleted")||this.get("purged")){return jQuery.when()}return this.save({deleted:false},n)},hide:function d(n){if(!this.get("visible")){return jQuery.when()}return this.save({visible:false},n)},unhide:function i(n){if(this.get("visible")){return jQuery.when()}return this.save({visible:true},n)},isVisible:function(o,p){var n=true;if((!o)&&(this.get("deleted")||this.get("purged"))){n=false}if((!p)&&(!this.get("visible"))){n=false}return n},searchAttribute:function(p,n){var o=this.get(p);if(!n||(o===undefined||o===null)){return false}if(_.isArray(o)){return this._searchArrayAttribute(o,n)}return(o.toString().toLowerCase().indexOf(n.toLowerCase())!==-1)},_searchArrayAttribute:function(o,n){n=n.toLowerCase();return _.any(o,function(p){return(p.toString().toLowerCase().indexOf(n.toLowerCase())!==-1)})},search:function(n){var o=this;return _.filter(this.searchAttributes,function(p){return o.searchAttribute(p,n)})},matches:function(o){var q="=",n=o.split(q);if(n.length>=2){var p=n[0];p=this.searchAliases[p]||p;return this.searchAttribute(p,n[1])}return !!this.search(o).length},matchesAll:function(o){var n=this;o=o.match(/(".*"|\w*=".*"|\S*)/g).filter(function(p){return !!p});return _.all(o,function(p){p=p.replace(/"/g,"");return n.matches(p)})},_createTypeId:function(){this.set("type_id",TypeIdModel.typeIdStr(this.get("history_content_type"),this.get("id")))},});a.typeIdStr=function h(n,o){return[n,o].join("-")};var m=a.extend({defaults:{history_id:null,model_class:"HistoryDatasetAssociation",history_content_type:"dataset",hid:0,id:null,name:"(unnamed dataset)",state:"new",deleted:false,visible:true,accessible:true,purged:false,data_type:"",file_size:0,file_ext:"",meta_files:[],misc_blurb:"",misc_info:"",tags:[],annotation:""},urls:function(){var o=this.get("id");if(!o){return{}}var n={purge:galaxy_config.root+"datasets/"+o+"/purge_async",display:galaxy_config.root+"datasets/"+o+"/display/?preview=True",edit:galaxy_config.root+"datasets/"+o+"/edit",download:galaxy_config.root+"datasets/"+o+"/display?to_ext="+this.get("file_ext"),report_error:galaxy_config.root+"dataset/errors?id="+o,rerun:galaxy_config.root+"tool_runner/rerun?id="+o,show_params:galaxy_config.root+"datasets/"+o+"/show_params",visualization:galaxy_config.root+"visualization",annotation:{get:galaxy_config.root+"dataset/get_annotation_async?id="+o,set:galaxy_config.root+"dataset/annotate_async?id="+o},meta_download:galaxy_config.root+"dataset/get_metadata_file?hda_id="+o+"&metadata_name="};return n},initialize:function(n){this.log(this+".initialize",this.attributes);this.log("\tparent history_id: "+this.get("history_id"));if(!this.get("accessible")){this.set("state",m.STATES.NOT_VIEWABLE)}this._setUpListeners()},_setUpListeners:function(){this.on("change:state",function(o,n){this.log(this+" has changed state:",o,n);if(this.inReadyState()){this.trigger("state:ready",o,n,this.previous("state"))}})},isDeletedOrPurged:function(){return(this.get("deleted")||this.get("purged"))},inReadyState:function(){var n=_.contains(m.READY_STATES,this.get("state"));return(this.isDeletedOrPurged()||n)},hasDetails:function(){return _.has(this.attributes,"genome_build")},hasData:function(){return(this.get("file_size")>0)},"delete":function f(n){if(this.get("deleted")){return jQuery.when()}return this.save({deleted:true},n)},undelete:function j(n){if(!this.get("deleted")||this.get("purged")){return jQuery.when()}return this.save({deleted:false},n)},hide:function d(n){if(!this.get("visible")){return jQuery.when()}return this.save({visible:false},n)},unhide:function i(n){if(this.get("visible")){return jQuery.when()}return this.save({visible:true},n)},purge:function g(n){if(this.get("purged")){return jQuery.when()}n=n||{};n.url=galaxy_config.root+"datasets/"+this.get("id")+"/purge_async";var o=this,p=jQuery.ajax(n);p.done(function(s,q,r){o.set({deleted:true,purged:true})});p.fail(function(u,q,t){var r=c("Unable to purge dataset");var s=("Removal of datasets by users is not allowed in this Galaxy instance");if(u.responseJSON&&u.responseJSON.error){r=u.responseJSON.error}else{if(u.responseText.indexOf(s)!==-1){r=s}}u.responseText=r;o.trigger("error",o,u,n,c(r),{error:r})});return p},searchAttributes:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],searchAliases:{title:"name",format:"file_ext",database:"genome_build",blurb:"misc_blurb",description:"misc_blurb",info:"misc_info",tag:"tags"},toString:function(){var n=this.get("id")||"";if(this.get("name")){n=this.get("hid")+' :"'+this.get("name")+'",'+n}return"HDA("+n+")"}});m.STATES={UPLOAD:"upload",QUEUED:"queued",RUNNING:"running",SETTING_METADATA:"setting_metadata",NEW:"new",EMPTY:"empty",OK:"ok",PAUSED:"paused",FAILED_METADATA:"failed_metadata",NOT_VIEWABLE:"noPermission",DISCARDED:"discarded",ERROR:"error"};m.READY_STATES=[m.STATES.OK,m.STATES.EMPTY,m.STATES.PAUSED,m.STATES.FAILED_METADATA,m.STATES.NOT_VIEWABLE,m.STATES.DISCARDED,m.STATES.ERROR];m.NOT_READY_STATES=[m.STATES.UPLOAD,m.STATES.QUEUED,m.STATES.RUNNING,m.STATES.SETTING_METADATA,m.STATES.NEW];var b=Backbone.Collection.extend(e.LoggableMixin).extend({model:function(o,n){if(o.history_content_type=="dataset"){return new m(o,n)}else{if(o.history_content_type=="dataset_collection"){return new k(o,n)}else{}}},urlRoot:galaxy_config.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},initialize:function(o,n){n=n||{};this.historyId=n.historyId},ids:function(){return this.map(function(n){return n.get("id")})},notReady:function(){return this.filter(function(n){return !n.inReadyState()})},running:function(){var n=[];this.each(function(o){if(!o.inReadyState()){n.push(o.get("id"))}});return n},getByHid:function(n){return _.first(this.filter(function(o){return o.get("hid")===n}))},getVisible:function(n,q,p){p=p||[];var o=new b(this.filter(function(r){return r.isVisible(n,q)}));_.each(p,function(r){if(!_.isFunction(r)){return}o=new b(o.filter(r))});return o},haveDetails:function(){return this.all(function(n){return n.hasDetails()})},fetchAllDetails:function(o){o=o||{};var n={details:"all"};o.data=(o.data)?(_.extend(o.data,n)):(n);return this.fetch(o)},ajaxQueue:function(q,p){var o=jQuery.Deferred(),n=this.length,s=[];if(!n){o.resolve([]);return o}var r=this.chain().reverse().map(function(u,t){return function(){var v=q.call(u,p);v.done(function(w){o.notify({curr:t,total:n,response:w,model:u})});v.always(function(w){s.push(w);if(r.length){r.shift()()}else{o.resolve(s)}})}}).value();r.shift()();return o},matches:function(n){return this.filter(function(o){return o.matches(n)})},set:function(p,n){var o=this;p=_.map(p,function(s){var r=s.attributes||s;var t=a.typeIdStr(r.history_content_type,r.id);var u=o.get(t);if(!u){return s}var q=u.toJSON();_.extend(q,s);return q});Backbone.Collection.prototype.set.call(this,p,n)},promoteToHistoryDatasetCollection:function l(s,q,o){o=o||{};o.url=this.url();o.type="POST";var u=q;var r=[],n=null;if(q=="list"){this.chain().each(function(x){var v=x.attributes.name;var y=x.get("id");var w=x.attributes.history_content_type;if(w=="dataset"){if(u!="list"){console.log("Invalid collection type")}r.push({name:v,src:"hda",id:y})}else{if(u=="list"){u="list:"+x.attributes.collection_type}else{if(u!="list:"+x.attributes.collection_type){console.log("Invalid collection type")}}r.push({name:v,src:"hdca",id:y})}});n="New Dataset List"}else{if(q=="paired"){var p=this.ids();if(p.length!=2){}r.push({name:"forward",src:"hda",id:p[0]});r.push({name:"reverse",src:"hda",id:p[1]});n="New Dataset Pair"}}o.data={type:"dataset_collection",name:n,collection_type:u,element_identifiers:JSON.stringify(r),};var t=jQuery.ajax(o);t.done(function(x,v,w){s.refresh()});t.fail(function(x,v,w){if(x.responseJSON&&x.responseJSON.error){error=x.responseJSON.error}else{error=x.responseJSON}x.responseText=error});return t},toString:function(){return(["HDACollection(",[this.historyId,this.length].join(),")"].join(""))}});var k=a.extend({defaults:{history_id:null,model_class:"HistoryDatasetCollectionAssociation",history_content_type:"dataset_collection",hid:0,id:null,name:"(unnamed dataset collection)",state:"ok",accessible:true,deleted:false,visible:true,purged:false,tags:[],annotation:""},urls:function(){},inReadyState:function(){return true},searchAttributes:["name"],searchAliases:{title:"name"},});return{HistoryDatasetAssociation:m,HDACollection:b}}); \ No newline at end of file +define(["mvc/history/history-content-base","utils/localization"],function(e,f){var d=e.HistoryContent.extend({defaults:{history_id:null,model_class:"HistoryDatasetAssociation",history_content_type:"dataset",hid:0,id:null,name:"(unnamed dataset)",state:"new",deleted:false,visible:true,accessible:true,purged:false,data_type:"",file_size:0,file_ext:"",meta_files:[],misc_blurb:"",misc_info:"",tags:[],annotation:""},urls:function(){var j=this.get("id");if(!j){return{}}var i={purge:galaxy_config.root+"datasets/"+j+"/purge_async",display:galaxy_config.root+"datasets/"+j+"/display/?preview=True",edit:galaxy_config.root+"datasets/"+j+"/edit",download:galaxy_config.root+"datasets/"+j+"/display?to_ext="+this.get("file_ext"),report_error:galaxy_config.root+"dataset/errors?id="+j,rerun:galaxy_config.root+"tool_runner/rerun?id="+j,show_params:galaxy_config.root+"datasets/"+j+"/show_params",visualization:galaxy_config.root+"visualization",annotation:{get:galaxy_config.root+"dataset/get_annotation_async?id="+j,set:galaxy_config.root+"dataset/annotate_async?id="+j},meta_download:galaxy_config.root+"dataset/get_metadata_file?hda_id="+j+"&metadata_name="};return i},initialize:function(i){this.log(this+".initialize",this.attributes);this.log("\tparent history_id: "+this.get("history_id"));if(!this.get("accessible")){this.set("state",d.STATES.NOT_VIEWABLE)}this._setUpListeners()},_setUpListeners:function(){this.on("change:state",function(j,i){this.log(this+" has changed state:",j,i);if(this.inReadyState()){this.trigger("state:ready",j,i,this.previous("state"))}})},isDeletedOrPurged:function(){return(this.get("deleted")||this.get("purged"))},inReadyState:function(){var i=_.contains(d.READY_STATES,this.get("state"));return(this.isDeletedOrPurged()||i)},hasDetails:function(){return _.has(this.attributes,"genome_build")},hasData:function(){return(this.get("file_size")>0)},"delete":function c(i){if(this.get("deleted")){return jQuery.when()}return this.save({deleted:true},i)},undelete:function a(i){if(!this.get("deleted")||this.get("purged")){return jQuery.when()}return this.save({deleted:false},i)},hide:function b(i){if(!this.get("visible")){return jQuery.when()}return this.save({visible:false},i)},unhide:function h(i){if(this.get("visible")){return jQuery.when()}return this.save({visible:true},i)},purge:function g(i){if(this.get("purged")){return jQuery.when()}i=i||{};i.url=galaxy_config.root+"datasets/"+this.get("id")+"/purge_async";var j=this,k=jQuery.ajax(i);k.done(function(n,l,m){j.set({deleted:true,purged:true})});k.fail(function(p,l,o){var m=f("Unable to purge dataset");var n=("Removal of datasets by users is not allowed in this Galaxy instance");if(p.responseJSON&&p.responseJSON.error){m=p.responseJSON.error}else{if(p.responseText.indexOf(n)!==-1){m=n}}p.responseText=m;j.trigger("error",j,p,i,f(m),{error:m})});return k},searchAttributes:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],searchAliases:{title:"name",format:"file_ext",database:"genome_build",blurb:"misc_blurb",description:"misc_blurb",info:"misc_info",tag:"tags"},toString:function(){var i=this.get("id")||"";if(this.get("name")){i=this.get("hid")+' :"'+this.get("name")+'",'+i}return"HDA("+i+")"}});d.STATES={UPLOAD:"upload",QUEUED:"queued",RUNNING:"running",SETTING_METADATA:"setting_metadata",NEW:"new",EMPTY:"empty",OK:"ok",PAUSED:"paused",FAILED_METADATA:"failed_metadata",NOT_VIEWABLE:"noPermission",DISCARDED:"discarded",ERROR:"error"};d.READY_STATES=[d.STATES.OK,d.STATES.EMPTY,d.STATES.PAUSED,d.STATES.FAILED_METADATA,d.STATES.NOT_VIEWABLE,d.STATES.DISCARDED,d.STATES.ERROR];d.NOT_READY_STATES=[d.STATES.UPLOAD,d.STATES.QUEUED,d.STATES.RUNNING,d.STATES.SETTING_METADATA,d.STATES.NEW];return{HistoryDatasetAssociation:d}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/grid/grid-view.js b/static/scripts/packed/mvc/grid/grid-view.js index 87d63c6c28d..2ae987a3985 100644 --- a/static/scripts/packed/mvc/grid/grid-view.js +++ b/static/scripts/packed/mvc/grid/grid-view.js @@ -1 +1 @@ -jQuery.ajaxSettings.traditional=true;define(["mvc/grid/grid-model","mvc/grid/grid-template","mvc/ui"],function(b,a){return Backbone.View.extend({grid:null,initialize:function(c){this.setElement("#grid-container");if(c.use_panels){$("#center").css({padding:"10px",overflow:"auto"})}this.init_grid(c)},handle_refresh:function(c){if(c){if($.inArray("history",c)>-1){if(top.Galaxy&&top.Galaxy.currHistoryPanel){top.Galaxy.currHistoryPanel.loadCurrentHistory()}}}},init_grid:function(f){this.grid=new b(f);var e=this.grid.attributes;this.handle_refresh(e.refresh_frames);var d=this.grid.get("url_base");d=d.replace(/^.*\/\/[^\/]+/,"");this.grid.set("url_base",d);this.$el.html(a.grid(e));this.$el.find("#grid-table-header").html(a.header(e));this.$el.find("#grid-table-body").html(a.body(e));this.$el.find("#grid-table-footer").html(a.footer(e));if(e.message){this.$el.find("#grid-message").html(a.message(e));var c=this;if(e.use_hide_message){setTimeout(function(){c.$el.find("#grid-message").html("")},5000)}}this.init_grid_elements();this.init_grid_controls();init_refresh_on_change()},init_grid_controls:function(){var c=this;this.$el.find(".operation-button").each(function(){$(this).off();$(this).click(function(){c.submit_operation(this,operation.confirm);return false})});this.$el.find("input[type=text]").each(function(){$(this).off();$(this).click(function(){$(this).select()}).keyup(function(){$(this).css("font-style","normal")})});this.$el.find(".sort-link").each(function(){$(this).off();$(this).click(function(){c.set_sort_condition($(this).attr("sort_key"));return false})});this.$el.find(".text-filter-form").each(function(){$(this).off();$(this).submit(function(){var g=$(this).attr("column_key");var f=$("#input-"+g+"-filter");var h=f.val();f.val("");c.add_filter_condition(g,h);return false})});this.$el.find(".text-filter-val > a").each(function(){$(this).off();$(this).click(function(){$(this).parent().remove();c.remove_filter_condition($(this).attr("filter_key"),$(this).attr("filter_val"));return false})});this.$el.find(".categorical-filter > a").each(function(){$(this).off();$(this).click(function(){c.set_categorical_filter($(this).attr("filter_key"),$(this).attr("filter_val"));return false})});var e=this.$el.find("#input-tags-filter");if(e.length){e.autocomplete(this.grid.history_tag_autocomplete_url,{selectFirst:false,autoFill:false,highlight:false,mustMatch:false})}var d=this.$el.find("#input-name-filter");if(d.length){d.autocomplete(this.grid.history_name_autocomplete_url,{selectFirst:false,autoFill:false,highlight:false,mustMatch:false})}this.$el.find(".advanced-search-toggle").each(function(){$(this).off();$(this).click(function(){c.$el.find("#standard-search").slideToggle("fast");c.$el.find("#advanced-search").slideToggle("fast");return false})});this.$el.find("#check_all").off();this.$el.find("#check_all").on("click",function(){c.check_all_items()})},init_grid_elements:function(){this.$el.find(".grid").each(function(){var j=$(this).find("input.grid-row-select-checkbox");var i=$(this).find("span.grid-selected-count");var r=function(){i.text($(j).filter(":checked").length)};$(j).each(function(){$(this).change(r)});r()});if(this.$el.find(".community_rating_star").length!==0){this.$el.find(".community_rating_star").rating({})}var q=this.grid.attributes;var p=this;this.$el.find(".page-link > a").each(function(){$(this).click(function(){p.set_page($(this).attr("page_num"));return false})});this.$el.find(".use-inbound").each(function(){$(this).click(function(i){p.execute({href:$(this).attr("href"),inbound:true});return false})});this.$el.find(".use-outbound").each(function(){$(this).click(function(i){p.execute({href:$(this).attr("href")});return false})});var f=q.items.length;if(f==0){return}for(var k in q.items){var o=q.items[k];var l=this.$el.find("#grid-"+k+"-popup");l.off();var d=new PopupMenu(l);for(var h in q.operations){var e=q.operations[h];var m=e.label;var c=o.operation_config[m];var g=o.encode_id;if(c.allowed&&e.allow_popup){var n={html:e.label,href:c.url_args,target:c.target,confirmation_text:e.confirm,inbound:e.inbound};n.func=function(r){r.preventDefault();var j=$(r.target).html();var i=this.findItemByHtml(j);p.execute(i)};d.addItem(n)}}}},add_filter_condition:function(e,g){if(g===""){return false}this.grid.add_filter(e,g,true);var f=$(a.filter_element(e,g));var d=this;f.click(function(){$(this).remove();d.remove_filter_condition(e,g)});var c=this.$el.find("#"+e+"-filtering-criteria");c.append(f);this.go_page_one();this.execute()},remove_filter_condition:function(c,d){this.grid.remove_filter(c,d);this.go_page_one();this.execute()},set_sort_condition:function(g){var f=this.grid.get("sort_key");var e=g;if(f.indexOf(g)!==-1){if(f.substring(0,1)!=="-"){e="-"+g}}this.$el.find(".sort-arrow").remove();var d=(e.substring(0,1)=="-")?"↑":"↓";var c=$(""+d+"").addClass("sort-arrow");this.$el.find("#"+g+"-header").append(c);this.grid.set("sort_key",e);this.go_page_one();this.execute()},set_categorical_filter:function(e,g){var d=this.grid.get("categorical_filters")[e],f=this.grid.get("filters")[e];var c=this;this.$el.find("."+e+"-filter").each(function(){var k=$.trim($(this).text());var i=d[k];var j=i[e];if(j==g){$(this).empty();$(this).addClass("current-filter");$(this).append(k)}else{if(j==f){$(this).empty();var h=$(''+k+"");h.click(function(){c.set_categorical_filter(e,j)});$(this).removeClass("current-filter");$(this).append(h)}}});this.grid.add_filter(e,g);this.go_page_one();this.execute()},set_page:function(c){var d=this;this.$el.find(".page-link").each(function(){var i=$(this).attr("id"),g=parseInt(i.split("-")[2],10),e=d.grid.get("cur_page"),h;if(g===c){h=$(this).children().text();$(this).empty();$(this).addClass("inactive-link");$(this).text(h)}else{if(g===e){h=$(this).text();$(this).empty();$(this).removeClass("inactive-link");var f=$(''+h+"");f.click(function(){d.set_page(g)});$(this).append(f)}}});if(c==="all"){this.grid.set("cur_page",c)}else{this.grid.set("cur_page",parseInt(c,10))}this.execute()},submit_operation:function(d,g){var e=$(d).val();var f=this.$el.find('input[name="id"]:checked').length;if(!f>0){return false}var c=[];this.$el.find("input[name=id]:checked").each(function(){c.push($(this).val())});this.execute({operation:e,id:c,confirmation_text:g});return true},check_all_items:function(){var c=document.getElementById("check_all"),d=document.getElementsByTagName("input"),f=0,e;if(c.checked===true){for(e=0;e1){var i=j[1];var d=i.split("&");for(var h=0;h-1){if(top.Galaxy&&top.Galaxy.currHistoryPanel){top.Galaxy.currHistoryPanel.loadCurrentHistory()}}}},init_grid:function(f){this.grid=new b(f);var e=this.grid.attributes;this.handle_refresh(e.refresh_frames);var d=this.grid.get("url_base");d=d.replace(/^.*\/\/[^\/]+/,"");this.grid.set("url_base",d);this.$el.html(a.grid(e));this.$el.find("#grid-table-header").html(a.header(e));this.$el.find("#grid-table-body").html(a.body(e));this.$el.find("#grid-table-footer").html(a.footer(e));if(e.message){this.$el.find("#grid-message").html(a.message(e));var c=this;if(e.use_hide_message){setTimeout(function(){c.$el.find("#grid-message").html("")},5000)}}this.init_grid_elements();this.init_grid_controls();init_refresh_on_change()},init_grid_controls:function(){var c=this;this.$el.find(".operation-button").each(function(){$(this).off();$(this).click(function(){c.submit_operation(this,operation.confirm);return false})});this.$el.find("input[type=text]").each(function(){$(this).off();$(this).click(function(){$(this).select()}).keyup(function(){$(this).css("font-style","normal")})});this.$el.find(".sort-link").each(function(){$(this).off();$(this).click(function(){c.set_sort_condition($(this).attr("sort_key"));return false})});this.$el.find(".text-filter-form").each(function(){$(this).off();$(this).submit(function(){var g=$(this).attr("column_key");var f=$("#input-"+g+"-filter");var h=f.val();f.val("");c.add_filter_condition(g,h);return false})});this.$el.find(".text-filter-val > a").each(function(){$(this).off();$(this).click(function(){$(this).parent().remove();c.remove_filter_condition($(this).attr("filter_key"),$(this).attr("filter_val"));return false})});this.$el.find(".categorical-filter > a").each(function(){$(this).off();$(this).click(function(){c.set_categorical_filter($(this).attr("filter_key"),$(this).attr("filter_val"));return false})});var e=this.$el.find("#input-tags-filter");if(e.length){e.autocomplete(this.grid.history_tag_autocomplete_url,{selectFirst:false,autoFill:false,highlight:false,mustMatch:false})}var d=this.$el.find("#input-name-filter");if(d.length){d.autocomplete(this.grid.history_name_autocomplete_url,{selectFirst:false,autoFill:false,highlight:false,mustMatch:false})}this.$el.find(".advanced-search-toggle").each(function(){$(this).off();$(this).click(function(){c.$el.find("#standard-search").slideToggle("fast");c.$el.find("#advanced-search").slideToggle("fast");return false})});this.$el.find("#check_all").off();this.$el.find("#check_all").on("click",function(){c.check_all_items()})},init_grid_elements:function(){this.$el.find(".grid").each(function(){var j=$(this).find("input.grid-row-select-checkbox");var i=$(this).find("span.grid-selected-count");var r=function(){i.text($(j).filter(":checked").length)};$(j).each(function(){$(this).change(r)});r()});if(this.$el.find(".community_rating_star").length!==0){this.$el.find(".community_rating_star").rating({})}var q=this.grid.attributes;var p=this;this.$el.find(".page-link > a").each(function(){$(this).click(function(){p.set_page($(this).attr("page_num"));return false})});this.$el.find(".use-inbound").each(function(){$(this).click(function(i){p.execute({href:$(this).attr("href"),inbound:true});return false})});this.$el.find(".use-outbound").each(function(){$(this).click(function(i){p.execute({href:$(this).attr("href")});return false})});var f=q.items.length;if(f==0){return}for(var k in q.items){var o=q.items[k];var l=this.$el.find("#grid-"+k+"-popup");l.off();var d=new PopupMenu(l);for(var h in q.operations){var e=q.operations[h];var m=e.label;var c=o.operation_config[m];var g=o.encode_id;if(c.allowed&&e.allow_popup){var n={html:e.label,href:c.url_args,target:c.target,confirmation_text:e.confirm,inbound:e.inbound};n.func=function(r){r.preventDefault();var j=$(r.target).html();var i=this.findItemByHtml(j);p.execute(i)};d.addItem(n)}}}},add_filter_condition:function(e,g){if(g===""){return false}this.grid.add_filter(e,g,true);var f=$(a.filter_element(e,g));var d=this;f.click(function(){$(this).remove();d.remove_filter_condition(e,g)});var c=this.$el.find("#"+e+"-filtering-criteria");c.append(f);this.go_page_one();this.execute()},remove_filter_condition:function(c,d){this.grid.remove_filter(c,d);this.go_page_one();this.execute()},set_sort_condition:function(g){var f=this.grid.get("sort_key");var e=g;if(f.indexOf(g)!==-1){if(f.substring(0,1)!=="-"){e="-"+g}}this.$el.find(".sort-arrow").remove();var d=(e.substring(0,1)=="-")?"↑":"↓";var c=$(""+d+"").addClass("sort-arrow");this.$el.find("#"+g+"-header").append(c);this.grid.set("sort_key",e);this.go_page_one();this.execute()},set_categorical_filter:function(e,g){var d=this.grid.get("categorical_filters")[e],f=this.grid.get("filters")[e];var c=this;this.$el.find("."+e+"-filter").each(function(){var k=$.trim($(this).text());var i=d[k];var j=i[e];if(j==g){$(this).empty();$(this).addClass("current-filter");$(this).append(k)}else{if(j==f){$(this).empty();var h=$(''+k+"");h.click(function(){c.set_categorical_filter(e,j)});$(this).removeClass("current-filter");$(this).append(h)}}});this.grid.add_filter(e,g);this.go_page_one();this.execute()},set_page:function(c){var d=this;this.$el.find(".page-link").each(function(){var i=$(this).attr("id"),g=parseInt(i.split("-")[2],10),e=d.grid.get("cur_page"),h;if(g===c){h=$(this).children().text();$(this).empty();$(this).addClass("inactive-link");$(this).text(h)}else{if(g===e){h=$(this).text();$(this).empty();$(this).removeClass("inactive-link");var f=$(''+h+"");f.click(function(){d.set_page(g)});$(this).append(f)}}});if(c==="all"){this.grid.set("cur_page",c)}else{this.grid.set("cur_page",parseInt(c,10))}this.execute()},submit_operation:function(d,g){var e=$(d).val();var f=this.$el.find('input[name="id"]:checked').length;if(!f>0){return false}var c=[];this.$el.find("input[name=id]:checked").each(function(){c.push($(this).val())});this.execute({operation:e,id:c,confirmation_text:g});return true},check_all_items:function(){var c=document.getElementById("check_all"),d=document.getElementsByTagName("input"),f=0,e;if(c.checked===true){for(e=0;e1){var i=j[1];var d=i.split("&");for(var h=0;h=2){var k=i[0];k=this.searchAliases[k]||k;return this.searchAttribute(k,i[1])}return !!this.search(j).length},matchesAll:function(j){var i=this;j=j.match(/(".*"|\w*=".*"|\S*)/g).filter(function(k){return !!k});return _.all(j,function(k){k=k.replace(/"/g,"");return i.matches(k)})},toString:function(){var i=this.get("id")||"";if(this.get("name")){i=this.get("hid")+' :"'+this.get("name")+'",'+i}return"HistoryContent("+i+")"}});f.typeIdStr=function h(i,j){return[i,j].join("-")};return{HistoryContent:f}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/history/history-contents.js b/static/scripts/packed/mvc/history/history-contents.js new file mode 100644 index 00000000000..9abd8878051 --- /dev/null +++ b/static/scripts/packed/mvc/history/history-contents.js @@ -0,0 +1 @@ +define(["mvc/history/history-content-base","mvc/dataset/hda-model","mvc/collection/hdca-model","mvc/base-mvc","utils/localization"],function(b,d,f,a,c){var g=Backbone.Collection.extend(a.LoggableMixin).extend({model:function(i,h){if(i.history_content_type==="dataset"){return new d.HistoryDatasetAssociation(i,h)}else{if(i.history_content_type==="dataset_collection"){return new f.HistoryDatasetCollectionAssociation(i,h)}}throw new TypeError("Unknown history_content_type:"+i.history_content_type)},initialize:function(i,h){h=h||{};this.historyId=h.historyId},urlRoot:galaxy_config.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},ids:function(){return this.map(function(h){return h.get("id")})},notReady:function(){return this.filter(function(h){return !h.inReadyState()})},running:function(){var h=[];this.each(function(i){if(!i.inReadyState()){h.push(i.get("id"))}});return h},getByHid:function(h){return _.first(this.filter(function(i){return i.get("hid")===h}))},getVisible:function(h,k,j){j=j||[];var i=new g(this.filter(function(l){return l.isVisible(h,k)}));_.each(j,function(l){if(!_.isFunction(l)){return}i=new g(i.filter(l))});return i},haveDetails:function(){return this.all(function(h){return h.hasDetails()})},fetchAllDetails:function(i){i=i||{};var h={details:"all"};i.data=(i.data)?(_.extend(i.data,h)):(h);return this.fetch(i)},ajaxQueue:function(k,j){var i=jQuery.Deferred(),h=this.length,m=[];if(!h){i.resolve([]);return i}var l=this.chain().reverse().map(function(o,n){return function(){var p=k.call(o,j);p.done(function(q){i.notify({curr:n,total:h,response:q,model:o})});p.always(function(q){m.push(q);if(l.length){l.shift()()}else{i.resolve(m)}})}}).value();l.shift()();return i},matches:function(h){return this.filter(function(i){return i.matches(h)})},set:function(j,h){var i=this;j=_.map(j,function(m){var l=m.attributes||m;var n=b.HistoryContent.typeIdStr(l.history_content_type,l.id);var o=i.get(n);if(!o){return m}var k=o.toJSON();_.extend(k,m);return k});Backbone.Collection.prototype.set.call(this,j,h)},promoteToHistoryDatasetCollection:function e(m,k,i){i=i||{};i.url=this.url();i.type="POST";var o=k;var l=[],h=null;if(k==="list"){this.chain().each(function(r){var p=r.attributes.name;var s=r.get("id");var q=r.attributes.history_content_type;if(q==="dataset"){if(o!=="list"){console.log("Invalid collection type")}l.push({name:p,src:"hda",id:s})}else{if(o==="list"){o="list:"+r.attributes.collection_type}else{if(o!=="list:"+r.attributes.collection_type){console.log("Invalid collection type")}}l.push({name:p,src:"hdca",id:s})}});h="New Dataset List"}else{if(k==="paired"){var j=this.ids();if(j.length!==2){}l.push({name:"forward",src:"hda",id:j[0]});l.push({name:"reverse",src:"hda",id:j[1]});h="New Dataset Pair"}}i.data={type:"dataset_collection",name:h,collection_type:o,element_identifiers:JSON.stringify(l)};var n=jQuery.ajax(i);n.done(function(r,p,q){m.refresh()});n.fail(function(r,p,q){if(r.responseJSON&&r.responseJSON.error){error=r.responseJSON.error}else{error=r.responseJSON}r.responseText=error});return n},toString:function(){return(["HistoryContents(",[this.parentId,this.length].join(),")"].join(""))}});return{HistoryContents:g}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/history/history-model.js b/static/scripts/packed/mvc/history/history-model.js index 7854ddea780..6a356d28c17 100644 --- a/static/scripts/packed/mvc/history/history-model.js +++ b/static/scripts/packed/mvc/history/history-model.js @@ -1 +1 @@ -define(["mvc/dataset/hda-model","mvc/base-mvc","utils/localization"],function(c,a,b){var e=Backbone.Model.extend(a.LoggableMixin).extend({defaults:{model_class:"History",id:null,name:"Unnamed History",state:"new",diskSize:0,deleted:false},urlRoot:galaxy_config.root+"api/histories",initialize:function(h,i,g){g=g||{};this.logger=g.logger||null;this.log(this+".initialize:",h,i,g);this.hdas=new c.HDACollection(i||[],{historyId:this.get("id")});if(i&&_.isArray(i)){this.hdas.reset(i)}this._setUpListeners();this.updateTimeoutId=null},_setUpListeners:function(){this.on("error",function(h,k,g,j,i){this.errorHandler(h,k,g,j,i)});if(this.hdas){this.listenTo(this.hdas,"error",function(){this.trigger.apply(this,["error:hdas"].concat(jQuery.makeArray(arguments)))})}this.on("change:id",function(h,g){if(this.hdas){this.hdas.historyId=g}},this)},errorHandler:function(h,k,g,j,i){this.clearUpdateTimeout()},ownedByCurrUser:function(){if(!Galaxy||!Galaxy.currUser){return false}if(Galaxy.currUser.isAnonymous()||Galaxy.currUser.id!==this.get("user_id")){return false}return true},hdaCount:function(){return _.reduce(_.values(this.get("state_details")),function(g,h){return g+h},0)},checkForUpdates:function(g){if(this.hdas.running().length){this.setUpdateTimeout()}else{this.trigger("ready");if(_.isFunction(g)){g.call(this)}}return this},setUpdateTimeout:function(g){g=g||e.UPDATE_DELAY;var h=this;this.clearUpdateTimeout();this.updateTimeoutId=setTimeout(function(){h.refresh()},g);return this.updateTimeoutId},clearUpdateTimeout:function(){if(this.updateTimeoutId){clearTimeout(this.updateTimeoutId);this.updateTimeoutId=null}},refresh:function(h,g){h=h||[];g=g||{};var i=this;g.data=g.data||{};if(h.length){g.data.details=h.join(",")}var j=this.hdas.fetch(g);j.done(function(k){i.checkForUpdates(function(){this.fetch()})});return j},toString:function(){return"History("+this.get("id")+","+this.get("name")+")"}});e.UPDATE_DELAY=4000;e.getHistoryData=function f(h,s){s=s||{};var m=s.hdaDetailIds||[];var j=s.hdcaDetailIds||[];var o=jQuery.Deferred(),n=null;function i(t){return jQuery.ajax(galaxy_config.root+"api/histories/"+h)}function g(t){if(!t||!t.state_ids){return 0}return _.reduce(t.state_ids,function(u,w,v){return u+w.length},0)}function r(u){if(!g(u)){return[]}if(_.isFunction(m)){m=m(u)}if(_.isFunction(j)){j=j(u)}var t={};if(m.length){t.dataset_details=m.join(",")}if(j.length){t.dataset_collection_details=j.join(",")}return jQuery.ajax(galaxy_config.root+"api/histories/"+u.id+"/contents",{data:t})}var q=s.historyFn||i,p=s.hdaFn||r;var l=q(h);l.done(function(t){n=t;o.notify({status:"history data retrieved",historyJSON:n})});l.fail(function(v,t,u){o.reject(v,"loading the history")});var k=l.then(p);k.then(function(t){o.notify({status:"dataset data retrieved",historyJSON:n,hdaJSON:t});o.resolve(n,t)});k.fail(function(v,t,u){o.reject(v,"loading the datasets",{history:n})});return o};var d=Backbone.Collection.extend(a.LoggableMixin).extend({model:e,urlRoot:galaxy_config.root+"api/histories"});return{History:e,HistoryCollection:d}}); \ No newline at end of file +define(["mvc/history/history-contents","mvc/base-mvc","utils/localization"],function(e,a,b){var d=Backbone.Model.extend(a.LoggableMixin).extend({defaults:{model_class:"History",id:null,name:"Unnamed History",state:"new",diskSize:0,deleted:false},urlRoot:galaxy_config.root+"api/histories",initialize:function(h,i,g){g=g||{};this.logger=g.logger||null;this.log(this+".initialize:",h,i,g);this.hdas=new e.HistoryContents(i||[],{historyId:this.get("id")});if(i&&_.isArray(i)){this.hdas.reset(i)}this._setUpListeners();this.updateTimeoutId=null},_setUpListeners:function(){this.on("error",function(h,k,g,j,i){this.errorHandler(h,k,g,j,i)});if(this.hdas){this.listenTo(this.hdas,"error",function(){this.trigger.apply(this,["error:hdas"].concat(jQuery.makeArray(arguments)))})}this.on("change:id",function(h,g){if(this.hdas){this.hdas.historyId=g}},this)},errorHandler:function(h,k,g,j,i){this.clearUpdateTimeout()},ownedByCurrUser:function(){if(!Galaxy||!Galaxy.currUser){return false}if(Galaxy.currUser.isAnonymous()||Galaxy.currUser.id!==this.get("user_id")){return false}return true},hdaCount:function(){return _.reduce(_.values(this.get("state_details")),function(g,h){return g+h},0)},checkForUpdates:function(g){if(this.hdas.running().length){this.setUpdateTimeout()}else{this.trigger("ready");if(_.isFunction(g)){g.call(this)}}return this},setUpdateTimeout:function(g){g=g||d.UPDATE_DELAY;var h=this;this.clearUpdateTimeout();this.updateTimeoutId=setTimeout(function(){h.refresh()},g);return this.updateTimeoutId},clearUpdateTimeout:function(){if(this.updateTimeoutId){clearTimeout(this.updateTimeoutId);this.updateTimeoutId=null}},refresh:function(h,g){h=h||[];g=g||{};var i=this;g.data=g.data||{};if(h.length){g.data.details=h.join(",")}var j=this.hdas.fetch(g);j.done(function(k){i.checkForUpdates(function(){this.fetch()})});return j},toString:function(){return"History("+this.get("id")+","+this.get("name")+")"}});d.UPDATE_DELAY=4000;d.getHistoryData=function f(h,s){s=s||{};var m=s.hdaDetailIds||[];var j=s.hdcaDetailIds||[];var o=jQuery.Deferred(),n=null;function i(t){return jQuery.ajax(galaxy_config.root+"api/histories/"+h)}function g(t){if(!t||!t.state_ids){return 0}return _.reduce(t.state_ids,function(u,w,v){return u+w.length},0)}function r(u){if(!g(u)){return[]}if(_.isFunction(m)){m=m(u)}if(_.isFunction(j)){j=j(u)}var t={};if(m.length){t.dataset_details=m.join(",")}if(j.length){t.dataset_collection_details=j.join(",")}return jQuery.ajax(galaxy_config.root+"api/histories/"+u.id+"/contents",{data:t})}var q=s.historyFn||i,p=s.hdaFn||r;var l=q(h);l.done(function(t){n=t;o.notify({status:"history data retrieved",historyJSON:n})});l.fail(function(v,t,u){o.reject(v,"loading the history")});var k=l.then(p);k.then(function(t){o.notify({status:"dataset data retrieved",historyJSON:n,hdaJSON:t});o.resolve(n,t)});k.fail(function(v,t,u){o.reject(v,"loading the datasets",{history:n})});return o};var c=Backbone.Collection.extend(a.LoggableMixin).extend({model:d,urlRoot:galaxy_config.root+"api/histories"});return{History:d,HistoryCollection:c}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/history/history-panel.js b/static/scripts/packed/mvc/history/history-panel.js index bd857ec8c46..d6204642bfd 100644 --- a/static/scripts/packed/mvc/history/history-panel.js +++ b/static/scripts/packed/mvc/history/history-panel.js @@ -1 +1 @@ -define(["mvc/dataset/hda-model","mvc/dataset/hda-edit","mvc/collection/dataset-collection-edit","mvc/history/readonly-history-panel","mvc/tags","mvc/annotations","utils/localization"],function(f,b,h,d,a,c,e){var g=d.ReadOnlyHistoryPanel.extend({HDAViewClass:b.HDAEditView,initialize:function(i){i=i||{};this.selectedHdaIds=[];this.lastSelectedViewId=null;this.tagsEditor=null;this.annotationEditor=null;this.purgeAllowed=i.purgeAllowed||false;this.selecting=i.selecting||false;this.annotationEditorShown=i.annotationEditorShown||false;this.tagsEditorShown=i.tagsEditorShown||false;d.ReadOnlyHistoryPanel.prototype.initialize.call(this,i)},_setUpModelEventHandlers:function(){d.ReadOnlyHistoryPanel.prototype._setUpModelEventHandlers.call(this);this.model.on("change:nice_size",this.updateHistoryDiskSize,this);this.model.hdas.on("change:deleted",this._handleHdaDeletionChange,this);this.model.hdas.on("change:visible",this._handleHdaVisibleChange,this);this.model.hdas.on("change:purged",function(i){this.model.fetch()},this)},renderModel:function(){var i=$("
    ");i.append(g.templates.historyPanel(this.model.toJSON()));this.$emptyMessage(i).text(this.emptyMsg);if(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")){this._renderTags(i);this._renderAnnotation(i)}i.find(".history-secondary-actions").prepend(this._renderSelectButton());i.find(".history-dataset-actions").toggle(this.selecting);i.find(".history-secondary-actions").prepend(this._renderSearchButton());this._setUpBehaviours(i);this.renderHdas(i);return i},_renderTags:function(i){var j=this;this.tagsEditor=new a.TagsEditor({model:this.model,el:i.find(".history-controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.toggleHDATagEditors(true,j.fxSpeed)},onhide:function(){j.toggleHDATagEditors(false,j.fxSpeed)},$activator:faIconButton({title:e("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(i.find(".history-secondary-actions"))})},_renderAnnotation:function(i){var j=this;this.annotationEditor=new c.AnnotationEditor({model:this.model,el:i.find(".history-controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.toggleHDAAnnotationEditors(true,j.fxSpeed)},onhide:function(){j.toggleHDAAnnotationEditors(false,j.fxSpeed)},$activator:faIconButton({title:e("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(i.find(".history-secondary-actions"))})},_renderSelectButton:function(i){return faIconButton({title:e("Operations on multiple datasets"),classes:"history-select-btn",faIcon:"fa-check-square-o"})},_setUpBehaviours:function(i){i=i||this.$el;d.ReadOnlyHistoryPanel.prototype._setUpBehaviours.call(this,i);if(!this.model){return}this._setUpDatasetActionsPopup(i);if((!Galaxy.currUser||Galaxy.currUser.isAnonymous())||(Galaxy.currUser.id!==this.model.get("user_id"))){return}var j=this;i.find(".history-name").attr("title",e("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(k){var l=j.model.get("name");if(k&&k!==l){j.$el.find(".history-name").text(k);j.model.save({name:k}).fail(function(){j.$el.find(".history-name").text(j.model.previous("name"))})}else{j.$el.find(".history-name").text(l)}}})},_setUpDatasetActionsPopup:function(i){var j=this,k=[{html:e("Hide datasets"),func:function(){var l=f.HistoryDatasetAssociation.prototype.hide;j.getSelectedHdaCollection().ajaxQueue(l)}},{html:e("Unhide datasets"),func:function(){var l=f.HistoryDatasetAssociation.prototype.unhide;j.getSelectedHdaCollection().ajaxQueue(l)}},{html:e("Delete datasets"),func:function(){var l=f.HistoryDatasetAssociation.prototype["delete"];j.getSelectedHdaCollection().ajaxQueue(l)}},{html:e("Undelete datasets"),func:function(){var l=f.HistoryDatasetAssociation.prototype.undelete;j.getSelectedHdaCollection().ajaxQueue(l)}}];if(j.purgeAllowed){k.push({html:e("Permanently delete datasets"),func:function(){if(confirm(e("This will permanently remove the data in your datasets. Are you sure?"))){var l=f.HistoryDatasetAssociation.prototype.purge;j.getSelectedHdaCollection().ajaxQueue(l)}}})}k.push({html:e("Build Dataset List (Experimental)"),func:function(){j.getSelectedHdaCollection().promoteToHistoryDatasetCollection(j.model,"list")}});k.push({html:e("Build Dataset Pair (Experimental)"),func:function(){j.getSelectedHdaCollection().promoteToHistoryDatasetCollection(j.model,"paired")}});k.push({html:e("Build List of Dataset Pairs (Experimental)"),func:j._showPairedCollectionModal.bind(j)});return new PopupMenu(i.find(".history-dataset-action-popup-btn"),k)},_showPairedCollectionModal:function(){var i=this,j=i.getSelectedHdaCollection().toJSON().filter(function(k){return k.history_content_type==="dataset"&&k.state===f.HistoryDatasetAssociation.STATES.OK});if(j.length){require(["mvc/collection/paired-collection-creator"],function(k){window.creator=k.pairedCollectionCreatorModal(j,{historyId:i.model.id})})}else{}},_handleHdaDeletionChange:function(i){if(i.get("deleted")&&!this.storage.get("show_deleted")){this.removeHdaView(this.hdaViews[i.id])}},_handleHdaVisibleChange:function(i){if(i.hidden()&&!this.storage.get("show_hidden")){this.removeHdaView(this.hdaViews[i.id])}},_createContentView:function(j){var i=j.id,l=j.get("history_content_type"),k=null;if(l==="dataset"){k=new this.HDAViewClass({model:j,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[i],selectable:this.selecting,purgeAllowed:this.purgeAllowed,hasUser:this.model.ownedByCurrUser(),logger:this.logger,tagsEditorShown:(this.tagsEditor&&!this.tagsEditor.hidden),annotationEditorShown:(this.annotationEditor&&!this.annotationEditor.hidden)})}else{if(l==="dataset_collection"){k=new h.DatasetCollectionEditView({model:j,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[i],hasUser:this.model.ownedByCurrUser(),logger:this.logger})}}this._setUpHdaListeners(k);return k},_setUpHdaListeners:function(j){var i=this;d.ReadOnlyHistoryPanel.prototype._setUpHdaListeners.call(this,j);j.on("selected",function(m,l){if(!l){return}var k=[];if((l.shiftKey)&&(i.lastSelectedViewId&&_.has(i.hdaViews,i.lastSelectedViewId))){var o=i.hdaViews[i.lastSelectedViewId];k=i.selectDatasetRange(m,o).map(function(p){return p.model.id})}else{var n=m.model.id;i.lastSelectedViewId=n;k=[n]}i.selectedHdaIds=_.union(i.selectedHdaIds,k)});j.on("de-selected",function(l,k){var m=l.model.id;i.selectedHdaIds=_.without(i.selectedHdaIds,m)})},toggleHDATagEditors:function(i){var j=arguments;_.each(this.hdaViews,function(k){if(k.tagsEditor){k.tagsEditor.toggle.apply(k.tagsEditor,j)}})},toggleHDAAnnotationEditors:function(i){var j=arguments;_.each(this.hdaViews,function(k){if(k.annotationEditor){k.annotationEditor.toggle.apply(k.annotationEditor,j)}})},removeHdaView:function(j){if(!j){return}var i=this;j.$el.fadeOut(i.fxSpeed,function(){j.off();j.remove();delete i.hdaViews[j.model.id];if(_.isEmpty(i.hdaViews)){i.trigger("empty-history",i);i._renderEmptyMsg()}})},events:_.extend(_.clone(d.ReadOnlyHistoryPanel.prototype.events),{"click .history-select-btn":"toggleSelectors","click .history-select-all-datasets-btn":"selectAllDatasets","click .history-deselect-all-datasets-btn":"deselectAllDatasets"}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},showSelectors:function(i){i=(i!==undefined)?(i):(this.fxSpeed);this.selecting=true;this.$(".history-dataset-actions").slideDown(i);_.each(this.hdaViews,function(j){j.showSelector()});this.selectedHdaIds=[];this.lastSelectedViewId=null},hideSelectors:function(i){i=(i!==undefined)?(i):(this.fxSpeed);this.selecting=false;this.$(".history-dataset-actions").slideUp(i);_.each(this.hdaViews,function(j){j.hideSelector()});this.selectedHdaIds=[];this.lastSelectedViewId=null},toggleSelectors:function(){if(!this.selecting){this.showSelectors()}else{this.hideSelectors()}},selectAllDatasets:function(i){_.each(this.hdaViews,function(j){j.select(i)})},deselectAllDatasets:function(i){this.lastSelectedViewId=null;_.each(this.hdaViews,function(j){j.deselect(i)})},selectDatasetRange:function(k,j){var i=this.hdaViewRange(k,j);_.each(i,function(l){l.select()});return i},getSelectedHdaViews:function(){return _.filter(this.hdaViews,function(i){return i.selected})},getSelectedHdaCollection:function(){return new f.HDACollection(_.map(this.getSelectedHdaViews(),function(i){return i.model}),{historyId:this.model.id})},toString:function(){return"HistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});return{HistoryPanel:g}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/dataset/hda-edit","mvc/collection/dataset-collection-edit","mvc/history/history-contents","mvc/history/readonly-history-panel","mvc/tags","mvc/annotations","utils/localization"],function(f,h,b,g,c,d,i,a){var e=c.ReadOnlyHistoryPanel.extend({HDAViewClass:h.HDAEditView,initialize:function(j){j=j||{};this.selectedHdaIds=[];this.lastSelectedViewId=null;this.tagsEditor=null;this.annotationEditor=null;this.purgeAllowed=j.purgeAllowed||false;this.selecting=j.selecting||false;this.annotationEditorShown=j.annotationEditorShown||false;this.tagsEditorShown=j.tagsEditorShown||false;c.ReadOnlyHistoryPanel.prototype.initialize.call(this,j)},_setUpModelEventHandlers:function(){c.ReadOnlyHistoryPanel.prototype._setUpModelEventHandlers.call(this);this.model.on("change:nice_size",this.updateHistoryDiskSize,this);this.model.hdas.on("change:deleted",this._handleHdaDeletionChange,this);this.model.hdas.on("change:visible",this._handleHdaVisibleChange,this);this.model.hdas.on("change:purged",function(j){this.model.fetch()},this)},renderModel:function(){var j=$("
    ");j.append(e.templates.historyPanel(this.model.toJSON()));this.$emptyMessage(j).text(this.emptyMsg);if(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")){this._renderTags(j);this._renderAnnotation(j)}j.find(".history-secondary-actions").prepend(this._renderSelectButton());j.find(".history-dataset-actions").toggle(this.selecting);j.find(".history-secondary-actions").prepend(this._renderSearchButton());this._setUpBehaviours(j);this.renderHdas(j);return j},_renderTags:function(j){var k=this;this.tagsEditor=new d.TagsEditor({model:this.model,el:j.find(".history-controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){k.toggleHDATagEditors(true,k.fxSpeed)},onhide:function(){k.toggleHDATagEditors(false,k.fxSpeed)},$activator:faIconButton({title:a("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(j.find(".history-secondary-actions"))})},_renderAnnotation:function(j){var k=this;this.annotationEditor=new i.AnnotationEditor({model:this.model,el:j.find(".history-controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){k.toggleHDAAnnotationEditors(true,k.fxSpeed)},onhide:function(){k.toggleHDAAnnotationEditors(false,k.fxSpeed)},$activator:faIconButton({title:a("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(j.find(".history-secondary-actions"))})},_renderSelectButton:function(j){return faIconButton({title:a("Operations on multiple datasets"),classes:"history-select-btn",faIcon:"fa-check-square-o"})},_setUpBehaviours:function(j){j=j||this.$el;c.ReadOnlyHistoryPanel.prototype._setUpBehaviours.call(this,j);if(!this.model){return}this._setUpDatasetActionsPopup(j);if((!Galaxy.currUser||Galaxy.currUser.isAnonymous())||(Galaxy.currUser.id!==this.model.get("user_id"))){return}var k=this;j.find(".history-name").attr("title",a("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(l){var m=k.model.get("name");if(l&&l!==m){k.$el.find(".history-name").text(l);k.model.save({name:l}).fail(function(){k.$el.find(".history-name").text(k.model.previous("name"))})}else{k.$el.find(".history-name").text(m)}}})},_setUpDatasetActionsPopup:function(j){var k=this,l=[{html:a("Hide datasets"),func:function(){var m=f.HistoryDatasetAssociation.prototype.hide;k.getSelectedHdaCollection().ajaxQueue(m)}},{html:a("Unhide datasets"),func:function(){var m=f.HistoryDatasetAssociation.prototype.unhide;k.getSelectedHdaCollection().ajaxQueue(m)}},{html:a("Delete datasets"),func:function(){var m=f.HistoryDatasetAssociation.prototype["delete"];k.getSelectedHdaCollection().ajaxQueue(m)}},{html:a("Undelete datasets"),func:function(){var m=f.HistoryDatasetAssociation.prototype.undelete;k.getSelectedHdaCollection().ajaxQueue(m)}}];if(k.purgeAllowed){l.push({html:a("Permanently delete datasets"),func:function(){if(confirm(a("This will permanently remove the data in your datasets. Are you sure?"))){var m=f.HistoryDatasetAssociation.prototype.purge;k.getSelectedHdaCollection().ajaxQueue(m)}}})}l.push({html:a("Build Dataset List (Experimental)"),func:function(){k.getSelectedHdaCollection().promoteToHistoryDatasetCollection(k.model,"list")}});l.push({html:a("Build Dataset Pair (Experimental)"),func:function(){k.getSelectedHdaCollection().promoteToHistoryDatasetCollection(k.model,"paired")}});l.push({html:a("Build List of Dataset Pairs (Experimental)"),func:_.bind(k._showPairedCollectionModal,k)});return new PopupMenu(j.find(".history-dataset-action-popup-btn"),l)},_showPairedCollectionModal:function(){var j=this,k=j.getSelectedHdaCollection().toJSON().filter(function(l){return l.history_content_type==="dataset"&&l.state===f.HistoryDatasetAssociation.STATES.OK});if(k.length){require(["mvc/collection/paired-collection-creator"],function(l){window.creator=l.pairedCollectionCreatorModal(k,{historyId:j.model.id})})}else{}},_handleHdaDeletionChange:function(j){if(j.get("deleted")&&!this.storage.get("show_deleted")){this.removeHdaView(this.hdaViews[j.id])}},_handleHdaVisibleChange:function(j){if(j.hidden()&&!this.storage.get("show_hidden")){this.removeHdaView(this.hdaViews[j.id])}},_createContentView:function(k){var j=k.id,m=k.get("history_content_type"),l=null;if(m==="dataset"){l=new this.HDAViewClass({model:k,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[j],selectable:this.selecting,purgeAllowed:this.purgeAllowed,hasUser:this.model.ownedByCurrUser(),logger:this.logger,tagsEditorShown:(this.tagsEditor&&!this.tagsEditor.hidden),annotationEditorShown:(this.annotationEditor&&!this.annotationEditor.hidden)})}else{if(m==="dataset_collection"){l=new b.DatasetCollectionEditView({model:k,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[j],hasUser:this.model.ownedByCurrUser(),logger:this.logger})}}this._setUpHdaListeners(l);return l},_setUpHdaListeners:function(k){var j=this;c.ReadOnlyHistoryPanel.prototype._setUpHdaListeners.call(this,k);k.on("selected",function(n,m){if(!m){return}var l=[];if((m.shiftKey)&&(j.lastSelectedViewId&&_.has(j.hdaViews,j.lastSelectedViewId))){var p=j.hdaViews[j.lastSelectedViewId];l=j.selectDatasetRange(n,p).map(function(q){return q.model.id})}else{var o=n.model.id;j.lastSelectedViewId=o;l=[o]}j.selectedHdaIds=_.union(j.selectedHdaIds,l)});k.on("de-selected",function(m,l){var n=m.model.id;j.selectedHdaIds=_.without(j.selectedHdaIds,n)})},toggleHDATagEditors:function(j){var k=arguments;_.each(this.hdaViews,function(l){if(l.tagsEditor){l.tagsEditor.toggle.apply(l.tagsEditor,k)}})},toggleHDAAnnotationEditors:function(j){var k=arguments;_.each(this.hdaViews,function(l){if(l.annotationEditor){l.annotationEditor.toggle.apply(l.annotationEditor,k)}})},removeHdaView:function(k){if(!k){return}var j=this;k.$el.fadeOut(j.fxSpeed,function(){k.off();k.remove();delete j.hdaViews[k.model.id];if(_.isEmpty(j.hdaViews)){j.trigger("empty-history",j);j._renderEmptyMsg()}})},events:_.extend(_.clone(c.ReadOnlyHistoryPanel.prototype.events),{"click .history-select-btn":"toggleSelectors","click .history-select-all-datasets-btn":"selectAllDatasets","click .history-deselect-all-datasets-btn":"deselectAllDatasets"}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},showSelectors:function(j){j=(j!==undefined)?(j):(this.fxSpeed);this.selecting=true;this.$(".history-dataset-actions").slideDown(j);_.each(this.hdaViews,function(k){k.showSelector()});this.selectedHdaIds=[];this.lastSelectedViewId=null},hideSelectors:function(j){j=(j!==undefined)?(j):(this.fxSpeed);this.selecting=false;this.$(".history-dataset-actions").slideUp(j);_.each(this.hdaViews,function(k){k.hideSelector()});this.selectedHdaIds=[];this.lastSelectedViewId=null},toggleSelectors:function(){if(!this.selecting){this.showSelectors()}else{this.hideSelectors()}},selectAllDatasets:function(j){_.each(this.hdaViews,function(k){k.select(j)})},deselectAllDatasets:function(j){this.lastSelectedViewId=null;_.each(this.hdaViews,function(k){k.deselect(j)})},selectDatasetRange:function(l,k){var j=this.hdaViewRange(l,k);_.each(j,function(m){m.select()});return j},getSelectedHdaViews:function(){return _.filter(this.hdaViews,function(j){return j.selected})},getSelectedHdaCollection:function(){return new g.HistoryContents(_.map(this.getSelectedHdaViews(),function(j){return j.model}),{historyId:this.model.id})},toString:function(){return"HistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});return{HistoryPanel:e}}); \ No newline at end of file diff --git a/static/scripts/packed/mvc/ui/ui-frames.js b/static/scripts/packed/mvc/ui/ui-frames.js index 310ab84a4c6..150088ec8f7 100644 --- a/static/scripts/packed/mvc/ui/ui-frames.js +++ b/static/scripts/packed/mvc/ui/ui-frames.js @@ -1 +1 @@ -define([],function(){var a=Backbone.View.extend({options:{frame:{cols:6,rows:3},rows:1000,cell:130,margin:5,scroll:5,top_min:40,frame_max:9,visible:true,onchange:null},cols:0,top:0,top_max:0,frame_z:0,frame_counter:0,frame_counter_id:0,frame_list:[],frame_shadow:null,visible:null,initialize:function(c){var b=this;if(c){this.options=_.defaults(c,this.options)}this.visible=this.options.visible;this.top=this.top_max=this.options.top_min;this.setElement(this._template());$(this.el).append(this._template_background());$(this.el).append(this._template_menu());$(this.el_main).append($(this.el));var d="#frame-shadow";$(this.el).append(this._template_shadow(d.substring(1)));this.frame_shadow={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};this._frame_resize(this.frame_shadow,{width:0,height:0});this.frame_list[d]=this.frame_shadow;this._panel_refresh();if(!this.visible){this.hide()}else{this.show()}var b=this;$(window).resize(function(){if(b.visible){b._panel_refresh()}})},add:function(c){var f={title:"",content:null,target:"",type:null};if(c){c=_.defaults(c,f)}else{c=f}if(!c.content){return}if(this.frame_counter>=this.options.frame_max){alert("You have reached the maximum number of allowed frames ("+this.options.frame_max+").");return}var d="#frame-"+(this.frame_counter_id++);if($(d).length!==0){alert("This frame already exists. This page might contain multiple frame managers.");return}this.top=this.options.top_min;var e=null;if(c.type==="url"){e=$(this._template_frame_url(d.substring(1),c.title,c.content))}else{if(c.type==="other"){e=$(this._template_frame(d.substring(1),c.title));var b=e.find(".f-content");console.log(b);if(_.isFunction(c.content)){c.content(b)}else{b.append(c.content)}}}$(this.el).append(e);var g={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};c.width=this._to_pixel_coord("width",this.options.frame.cols);c.height=this._to_pixel_coord("height",this.options.frame.rows);this.frame_z=parseInt($(g.id).css("z-index"));this.frame_list[d]=g;this.frame_counter++;this._frame_resize(g,{width:c.width,height:c.height});this._frame_insert(g,{top:0,left:0},true);if(!this.visible){this.show()}},show:function(){this.visible=true;this.$el.find(".frame").fadeIn("fast");this.$el.find(this.frame_shadow.id).hide();this.$el.find(".frame-background").show();this._panel_refresh();this._menu_refresh()},hide:function(){if(this.event.type!==null){return}this.visible=false;this.$el.find(".frame").fadeOut("fast");this.$el.find(".frame-background").hide();this.$el.find(".frame-menu").hide();this._menu_refresh()},length:function(){return this.frame_counter},setOnChange:function(b){this.options.onchange=b},event:{type:null,target:null,xy:null},events:{mousemove:"_event_frame_mouse_move",mouseup:"_event_frame_mouse_up",mouseleave:"_event_frame_mouse_up",mousewheel:"_event_panel_scroll",DOMMouseScroll:"_event_panel_scroll","mousedown .frame":"_event_frame_mouse_down","mousedown .frame-background":"_event_hide","mousedown .frame-scroll-up":"_event_panel_scroll_up","mousedown .frame-scroll-down":"_event_panel_scroll_down","mousedown .f-close":"_event_frame_close","mousedown .f-pin":"_event_frame_lock"},_event_frame_mouse_down:function(b){if(this.event.type!==null){return}if($(b.target).hasClass("f-header")||$(b.target).hasClass("f-title")){this.event.type="drag"}if($(b.target).hasClass("f-resize")){this.event.type="resize"}if(this.event.type===null){return}b.preventDefault();this.event.target=this._frame_identify(b.target);if(this.event.target.grid_lock){this.event.type=null;return}this.event.xy={x:b.originalEvent.pageX,y:b.originalEvent.pageY};this._frame_drag_start(this.event.target)},_event_frame_mouse_move:function(h){if(this.event.type!="drag"&&this.event.type!="resize"){return}var f={x:h.originalEvent.pageX,y:h.originalEvent.pageY};var c={x:f.x-this.event.xy.x,y:f.y-this.event.xy.y};this.event.xy=f;var g=this._frame_screen(this.event.target);if(this.event.type=="resize"){g.width+=c.x;g.height+=c.y;var d=this.options.cell-this.options.margin-1;g.width=Math.max(g.width,d);g.height=Math.max(g.height,d);this._frame_resize(this.event.target,g);g.width=this._to_grid_coord("width",g.width)+1;g.height=this._to_grid_coord("height",g.height)+1;g.width=this._to_pixel_coord("width",g.width);g.height=this._to_pixel_coord("height",g.height);this._frame_resize(this.frame_shadow,g);this._frame_insert(this.frame_shadow,{top:this._to_grid_coord("top",g.top),left:this._to_grid_coord("left",g.left)})}if(this.event.type=="drag"){g.left+=c.x;g.top+=c.y;this._frame_offset(this.event.target,g);var b={top:this._to_grid_coord("top",g.top),left:this._to_grid_coord("left",g.left)};if(b.left!==0){b.left++}this._frame_insert(this.frame_shadow,b)}},_event_frame_mouse_up:function(b){if(this.event.type!="drag"&&this.event.type!="resize"){return}this._frame_drag_stop(this.event.target);this.event.type=null},_event_frame_close:function(c){if(this.event.type!==null){return}c.preventDefault();var d=this._frame_identify(c.target);var b=this;$(d.id).fadeOut("fast",function(){$(d.id).remove();delete b.frame_list[d.id];b.frame_counter--;b._panel_refresh(true);b._panel_animation_complete();if(b.visible&&b.frame_counter==0){b.hide()}})},_event_frame_lock:function(b){if(this.event.type!==null){return}b.preventDefault();var c=this._frame_identify(b.target);if(c.grid_lock){c.grid_lock=false;$(c.id).find(".f-pin").removeClass("toggle");$(c.id).find(".f-header").removeClass("f-not-allowed");$(c.id).find(".f-title").removeClass("f-not-allowed");$(c.id).find(".f-resize").show();$(c.id).find(".f-close").show()}else{c.grid_lock=true;$(c.id).find(".f-pin").addClass("toggle");$(c.id).find(".f-header").addClass("f-not-allowed");$(c.id).find(".f-title").addClass("f-not-allowed");$(c.id).find(".f-resize").hide();$(c.id).find(".f-close").hide()}},_event_hide:function(b){if(this.event.type!==null){return}this.hide()},_event_panel_scroll:function(b){if(this.event.type!==null||!this.visible){return}var c=$(b.srcElement).parents(".frame");if(c.length!==0){b.stopPropagation();return}b.preventDefault();var d=b.originalEvent.detail?b.originalEvent.detail:b.originalEvent.wheelDelta/-3;this._panel_scroll(d)},_event_panel_scroll_up:function(b){if(this.event.type!==null){return}b.preventDefault();this._panel_scroll(-this.options.scroll)},_event_panel_scroll_down:function(b){if(this.event.type!==null){return}b.preventDefault();this._panel_scroll(this.options.scroll)},_frame_identify:function(b){return this.frame_list["#"+$(b).closest(".frame").attr("id")]},_frame_drag_start:function(c){this._frame_focus(c,true);var b=this._frame_screen(c);this._frame_resize(this.frame_shadow,b);this._frame_grid(this.frame_shadow,c.grid_location);c.grid_location=null;$(this.frame_shadow.id).show();$(".f-cover").show()},_frame_drag_stop:function(c){this._frame_focus(c,false);var b=this._frame_screen(this.frame_shadow);this._frame_resize(c,b);this._frame_grid(c,this.frame_shadow.grid_location,true);this.frame_shadow.grid_location=null;$(this.frame_shadow.id).hide();$(".f-cover").hide();this._panel_animation_complete()},_to_grid_coord:function(d,c){var b=(d=="width"||d=="height")?1:-1;if(d=="top"){c-=this.top}return parseInt((c+b*this.options.margin)/this.options.cell,10)},_to_pixel_coord:function(d,e){var b=(d=="width"||d=="height")?1:-1;var c=(e*this.options.cell)-b*this.options.margin;if(d=="top"){c+=this.top}return c},_to_grid:function(b){return{top:this._to_grid_coord("top",b.top),left:this._to_grid_coord("left",b.left),width:this._to_grid_coord("width",b.width),height:this._to_grid_coord("height",b.height)}},_to_pixel:function(b){return{top:this._to_pixel_coord("top",b.top),left:this._to_pixel_coord("left",b.left),width:this._to_pixel_coord("width",b.width),height:this._to_pixel_coord("height",b.height)}},_is_collision:function(d){function b(g,f){return !(g.left>f.left+f.width-1||g.left+g.width-1f.top+f.height-1||g.top+g.height-1l?1:0)});for(e=0;e
    '},_template_frame:function(c,b){if(!b){b=""}return'
    '+b+'
    '},_template_frame_url:function(e,d,b){if(b.indexOf("?")==-1){b+="?"}else{b+="&"}b+="widget=True";var c=$(this._template_frame(e,d));c.find(".f-content").append('');return c},_template_shadow:function(b){return'
    '},_template_background:function(){return'
    '},_template_menu:function(){return'
    '}});return{View:a}}); \ No newline at end of file +define([],function(){var a=Backbone.View.extend({options:{frame:{cols:6,rows:3},rows:1000,cell:130,margin:5,scroll:5,top_min:40,frame_max:9,visible:true,onchange:null},cols:0,top:0,top_max:0,frame_z:0,frame_counter:0,frame_counter_id:0,frame_list:[],frame_shadow:null,visible:null,initialize:function(c){var b=this;if(c){this.options=_.defaults(c,this.options)}this.visible=this.options.visible;this.top=this.top_max=this.options.top_min;this.setElement(this._template());$(this.el).append(this._template_background());$(this.el).append(this._template_menu());$(this.el_main).append($(this.el));var d="#frame-shadow";$(this.el).append(this._template_shadow(d.substring(1)));this.frame_shadow={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};this._frame_resize(this.frame_shadow,{width:0,height:0});this.frame_list[d]=this.frame_shadow;this._panel_refresh();if(!this.visible){this.hide()}else{this.show()}var b=this;$(window).resize(function(){if(b.visible){b._panel_refresh()}})},add:function(c){var f={title:"",content:null,target:"",type:null};if(c){c=_.defaults(c,f)}else{c=f}if(!c.content){return}if(this.frame_counter>=this.options.frame_max){alert("You have reached the maximum number of allowed frames ("+this.options.frame_max+").");return}var d="#frame-"+(this.frame_counter_id++);if($(d).length!==0){alert("This frame already exists. This page might contain multiple frame managers.");return}this.top=this.options.top_min;var e=null;if(c.type==="url"){e=$(this._template_frame_url(d.substring(1),c.title,c.content))}else{if(c.type==="other"){e=$(this._template_frame(d.substring(1),c.title));var b=e.find(".f-content");if(_.isFunction(c.content)){c.content(b)}else{b.append(c.content)}}}$(this.el).append(e);var g={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};c.width=this._to_pixel_coord("width",this.options.frame.cols);c.height=this._to_pixel_coord("height",this.options.frame.rows);this.frame_z=parseInt($(g.id).css("z-index"));this.frame_list[d]=g;this.frame_counter++;this._frame_resize(g,{width:c.width,height:c.height});this._frame_insert(g,{top:0,left:0},true);if(!this.visible){this.show()}},show:function(){this.visible=true;this.$el.find(".frame").fadeIn("fast");this.$el.find(this.frame_shadow.id).hide();this.$el.find(".frame-background").show();this._panel_refresh();this._menu_refresh()},hide:function(){if(this.event.type!==null){return}this.visible=false;this.$el.find(".frame").fadeOut("fast");this.$el.find(".frame-background").hide();this.$el.find(".frame-menu").hide();this._menu_refresh()},length:function(){return this.frame_counter},setOnChange:function(b){this.options.onchange=b},event:{type:null,target:null,xy:null},events:{mousemove:"_event_frame_mouse_move",mouseup:"_event_frame_mouse_up",mouseleave:"_event_frame_mouse_up",mousewheel:"_event_panel_scroll",DOMMouseScroll:"_event_panel_scroll","mousedown .frame":"_event_frame_mouse_down","mousedown .frame-background":"_event_hide","mousedown .frame-scroll-up":"_event_panel_scroll_up","mousedown .frame-scroll-down":"_event_panel_scroll_down","mousedown .f-close":"_event_frame_close","mousedown .f-pin":"_event_frame_lock"},_event_frame_mouse_down:function(b){if(this.event.type!==null){return}if($(b.target).hasClass("f-header")||$(b.target).hasClass("f-title")){this.event.type="drag"}if($(b.target).hasClass("f-resize")){this.event.type="resize"}if(this.event.type===null){return}b.preventDefault();this.event.target=this._frame_identify(b.target);if(this.event.target.grid_lock){this.event.type=null;return}this.event.xy={x:b.originalEvent.pageX,y:b.originalEvent.pageY};this._frame_drag_start(this.event.target)},_event_frame_mouse_move:function(h){if(this.event.type!="drag"&&this.event.type!="resize"){return}var f={x:h.originalEvent.pageX,y:h.originalEvent.pageY};var c={x:f.x-this.event.xy.x,y:f.y-this.event.xy.y};this.event.xy=f;var g=this._frame_screen(this.event.target);if(this.event.type=="resize"){g.width+=c.x;g.height+=c.y;var d=this.options.cell-this.options.margin-1;g.width=Math.max(g.width,d);g.height=Math.max(g.height,d);this._frame_resize(this.event.target,g);g.width=this._to_grid_coord("width",g.width)+1;g.height=this._to_grid_coord("height",g.height)+1;g.width=this._to_pixel_coord("width",g.width);g.height=this._to_pixel_coord("height",g.height);this._frame_resize(this.frame_shadow,g);this._frame_insert(this.frame_shadow,{top:this._to_grid_coord("top",g.top),left:this._to_grid_coord("left",g.left)})}if(this.event.type=="drag"){g.left+=c.x;g.top+=c.y;this._frame_offset(this.event.target,g);var b={top:this._to_grid_coord("top",g.top),left:this._to_grid_coord("left",g.left)};if(b.left!==0){b.left++}this._frame_insert(this.frame_shadow,b)}},_event_frame_mouse_up:function(b){if(this.event.type!="drag"&&this.event.type!="resize"){return}this._frame_drag_stop(this.event.target);this.event.type=null},_event_frame_close:function(c){if(this.event.type!==null){return}c.preventDefault();var d=this._frame_identify(c.target);var b=this;$(d.id).fadeOut("fast",function(){$(d.id).remove();delete b.frame_list[d.id];b.frame_counter--;b._panel_refresh(true);b._panel_animation_complete();if(b.visible&&b.frame_counter==0){b.hide()}})},_event_frame_lock:function(b){if(this.event.type!==null){return}b.preventDefault();var c=this._frame_identify(b.target);if(c.grid_lock){c.grid_lock=false;$(c.id).find(".f-pin").removeClass("toggle");$(c.id).find(".f-header").removeClass("f-not-allowed");$(c.id).find(".f-title").removeClass("f-not-allowed");$(c.id).find(".f-resize").show();$(c.id).find(".f-close").show()}else{c.grid_lock=true;$(c.id).find(".f-pin").addClass("toggle");$(c.id).find(".f-header").addClass("f-not-allowed");$(c.id).find(".f-title").addClass("f-not-allowed");$(c.id).find(".f-resize").hide();$(c.id).find(".f-close").hide()}},_event_hide:function(b){if(this.event.type!==null){return}this.hide()},_event_panel_scroll:function(b){if(this.event.type!==null||!this.visible){return}var c=$(b.srcElement).parents(".frame");if(c.length!==0){b.stopPropagation();return}b.preventDefault();var d=b.originalEvent.detail?b.originalEvent.detail:b.originalEvent.wheelDelta/-3;this._panel_scroll(d)},_event_panel_scroll_up:function(b){if(this.event.type!==null){return}b.preventDefault();this._panel_scroll(-this.options.scroll)},_event_panel_scroll_down:function(b){if(this.event.type!==null){return}b.preventDefault();this._panel_scroll(this.options.scroll)},_frame_identify:function(b){return this.frame_list["#"+$(b).closest(".frame").attr("id")]},_frame_drag_start:function(c){this._frame_focus(c,true);var b=this._frame_screen(c);this._frame_resize(this.frame_shadow,b);this._frame_grid(this.frame_shadow,c.grid_location);c.grid_location=null;$(this.frame_shadow.id).show();$(".f-cover").show()},_frame_drag_stop:function(c){this._frame_focus(c,false);var b=this._frame_screen(this.frame_shadow);this._frame_resize(c,b);this._frame_grid(c,this.frame_shadow.grid_location,true);this.frame_shadow.grid_location=null;$(this.frame_shadow.id).hide();$(".f-cover").hide();this._panel_animation_complete()},_to_grid_coord:function(d,c){var b=(d=="width"||d=="height")?1:-1;if(d=="top"){c-=this.top}return parseInt((c+b*this.options.margin)/this.options.cell,10)},_to_pixel_coord:function(d,e){var b=(d=="width"||d=="height")?1:-1;var c=(e*this.options.cell)-b*this.options.margin;if(d=="top"){c+=this.top}return c},_to_grid:function(b){return{top:this._to_grid_coord("top",b.top),left:this._to_grid_coord("left",b.left),width:this._to_grid_coord("width",b.width),height:this._to_grid_coord("height",b.height)}},_to_pixel:function(b){return{top:this._to_pixel_coord("top",b.top),left:this._to_pixel_coord("left",b.left),width:this._to_pixel_coord("width",b.width),height:this._to_pixel_coord("height",b.height)}},_is_collision:function(d){function b(g,f){return !(g.left>f.left+f.width-1||g.left+g.width-1f.top+f.height-1||g.top+g.height-1l?1:0)});for(e=0;e
    '},_template_frame:function(c,b){if(!b){b=""}return'
    '+b+'
    '},_template_frame_url:function(e,d,b){if(b.indexOf("?")==-1){b+="?"}else{b+="&"}b+="widget=True";var c=$(this._template_frame(e,d));c.find(".f-content").append('');return c},_template_shadow:function(b){return'
    '},_template_background:function(){return'
    '},_template_menu:function(){return'
    '}});return{View:a}}); \ No newline at end of file diff --git a/static/scripts/packed/utils/config.js b/static/scripts/packed/utils/config.js index 628535f4948..186bfeae6cd 100644 --- a/static/scripts/packed/utils/config.js +++ b/static/scripts/packed/utils/config.js @@ -1 +1 @@ -define(["libs/underscore","viz/trackster/util","utils/config"],function(c,f,b){var d=Backbone.Model.extend({initialize:function(g){var h=this.get("key");this.set("id",h);var i=c.find(d.known_settings_defaults,function(j){return j.key===h});if(i){this.set(c.extend({},i,g))}if(this.get("value")===undefined){this.set_value(this.get("default_value"));if(!this.get("value")&&this.get("type")==="color"){this.set("value",f.get_random_color())}}},set_value:function(h){var g=this.get("type");if(g==="float"){h=parseFloat(h)}else{if(g==="int"){h=parseInt(h,10)}}this.set("value",h)}},{known_settings_defaults:[{key:"name",label:"Name",type:"text",default_value:""},{key:"color",label:"Color",type:"color",default_value:null},{key:"min_value",label:"Min Value",type:"float",default_value:null},{key:"max_value",label:"Max Value",type:"float",default_value:null},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:32,hidden:true},{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"block_color",label:"Block color",type:"color",default_value:null},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:false},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"reverse_strand_color",label:"Antisense strand color",type:"color",default_value:null},{key:"show_differences",label:"Show differences only",type:"bool",default_value:true},{key:"mode",type:"string",default_value:this.mode,hidden:true}]});var e=Backbone.Collection.extend({model:d,to_key_value_dict:function(){var g={};this.each(function(h){g[h.get("key")]=h.get("value")});return g},get_value:function(g){var h=this.get(g);if(h){return h.get("value")}return undefined},set_value:function(g,i){var h=this.get(g);if(h){return h.set_value(i)}return undefined},set_default_value:function(h,g){var i=this.get(h);if(i){return i.set("default_value",g)}return undefined}},{from_models_and_saved_values:function(h,g){if(g){h=c.map(h,function(i){return c.extend({},i,{value:g[i.key]})})}return new e(h)}});var a=Backbone.View.extend({className:"config-settings-view",render:function(){var g=this.$el;this.collection.each(function(j,n){if(j.get("hidden")){return}var i="param_"+n,o=j.get("type"),s=j.get("value");var t=$("
    ").appendTo(g);t.append($("