opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00
Code Issues Packages Projects Releases Wiki Activity

Merge branch 'release_22.01' into release_22.05

Browse Source
This commit is contained in:
Nicola Soranzo
2022-09-06 12:12:21 +01:00
parent 2b450df90e 9f1d8d053b
commit 70b2ea429c
4 changed files with 34 additions and 1 deletions
Download Patch File Download Diff File Expand all files Collapse all files
test/functional/tools/metadata_bed.xml
+28
View File
@@ -0,0 +1,28 @@
<tool id="metadata_bed" name="BED metadata test" version="1.0.0">
<command>
<![CDATA[
echo "chromCol $input1.metadata.chromCol" > $out_file1 &&
echo "startCol $input1.metadata.startCol" >> $out_file1 &&
echo "endCol $input1.metadata.endCol" >> $out_file1 &&
echo "strandCol $input1.metadata.strandCol" >> $out_file1
]]>
</command>
<inputs>
<param format="interval" name="input1" type="data" label="Choose intervals"/>
</inputs>
<outputs>
<data format="txt" name="out_file1"/>
</outputs>
<tests>
<test>
<param name="input1" value="1.bed" ftype="bed"/>
<output name="out_file1">
<assert_contents>
<has_text text="strandCol 6"/>
</assert_contents>
</output>
</test>
</tests>
<help>
</help>
</tool>
test/functional/tools/samples_tool_conf.xml
+1
View File
@@ -67,6 +67,7 @@
<tool file="metadata.xml" />
<tool file="metadata_bam.xml" />
<tool file="metadata_bcf.xml" />
<tool file="metadata_bed.xml" />
<tool file="metadata_biom1.xml" />
<tool file="metadata_column_names.xml" />
<tool file="strict_shell.xml" />