From 704f0620f517636f99530fa74a1d5fc75e17941d Mon Sep 17 00:00:00 2001 From: M Bernt Date: Thu, 5 Jun 2025 09:31:28 +0200 Subject: [PATCH] Doc improvements Co-authored-by: Nicola Soranzo --- lib/galaxy/config/sample/job_conf.sample.yml | 18 +++++++++++------- 1 file changed, 11 insertions(+), 7 deletions(-) diff --git a/lib/galaxy/config/sample/job_conf.sample.yml b/lib/galaxy/config/sample/job_conf.sample.yml index 6f4dba5f7d0..2a9a33fd0ef 100644 --- a/lib/galaxy/config/sample/job_conf.sample.yml +++ b/lib/galaxy/config/sample/job_conf.sample.yml @@ -586,18 +586,22 @@ execution: # argument by default. You can turn this off by setting singularity_cleanenv to `false`. #singularity_cleanenv: true - # Singularity by default inherits the IPC namespace, this can give - # issues with multiprocessing, hence galaxy passes the `ipc` argument - # by default to isolate the PID namespace. You can turn this of by setting - # singularity_ipc to `false`. + # Singularity by default inherits the PID namespace, this can give + # issues with multiprocessing, hence galaxy passes the `--pid` argument + # by default to isolate the PID namespace. You can turn this off by setting + # singularity_pid to `false`. #singularity_pid: true + Singularity by default inherits the IPC namespace, this can give + issues with multiprocessing, hence Galaxy passes the `--ipc` argument + by default to isolate the IPC namespace. You can turn this off by setting + singularity_ipc to `false`. #singularity_ipc: true # Singularity mounts some directories, such as $HOME and $PWD by default. - # using --contain disables this behaviour and only allows explicitly - # requested volumes to be mounted. This gives fully full-control over + # Setting singularity_contain to `true` disables this behaviour and only allows explicitly + # requested volumes to be mounted. This gives full control over # the mounting behavior. - #singulartity_contain: true + #singularity_contain: true # Pass extra arguments to the singularity exec command not covered by the # above options.