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This commit is contained in:
Greg Von Kuster
2009-01-21 17:06:02 -05:00
parent ba3fd2175d 7e21fb74a3
commit 6dd5b31c0e
6 changed files with 36 additions and 22 deletions
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tools/data_source/biomart.xml
+6 -2
View File
@@ -21,17 +21,21 @@
<param_from_source name="GALAXY_URL" missing="0" />
</add_to_url>
</request_param>
<request_param galaxy_name="data_type" remote_name="exportView_outputformat" missing="tabular" >
<data_type_translation>
<format galaxy_format="tabular" remote_format="TSV" />
</data_type_translation>
</request_param>
<request_param galaxy_name="dbkey" remote_name="dbkey" missing="?" />
<request_param galaxy_name="organism" remote_name="organism" missing="" />
<request_param galaxy_name="table" remote_name="table" missing="" />
<request_param galaxy_name="description" remote_name="description" missing="" />
<request_param galaxy_name="name" remote_name="name" missing="Biomart query" />
<request_param galaxy_name="info" remote_name="info" missing="" />
<request_param galaxy_name="data_type" remote_name="type" missing="txt" />
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="txt" />
<data name="output" format="tabular" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>
tools/data_source/biomart_test.xml
+6 -2
View File
@@ -21,17 +21,21 @@
<param_from_source name="GALAXY_URL" missing="0" />
</add_to_url>
</request_param>
<request_param galaxy_name="data_type" remote_name="exportView_outputformat" missing="tabular" >
<data_type_translation>
<format galaxy_format="tabular" remote_format="TSV" />
</data_type_translation>
</request_param>
<request_param galaxy_name="dbkey" remote_name="dbkey" missing="?" />
<request_param galaxy_name="organism" remote_name="organism" missing="" />
<request_param galaxy_name="table" remote_name="table" missing="" />
<request_param galaxy_name="description" remote_name="description" missing="" />
<request_param galaxy_name="name" remote_name="name" missing="Biomart test query" />
<request_param galaxy_name="info" remote_name="info" missing="" />
<request_param galaxy_name="data_type" remote_name="type" missing="txt" />
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="txt" />
<data name="output" format="tabular" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>
tools/data_source/ucsc_tablebrowser.xml
+6 -2
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@@ -21,16 +21,20 @@
<request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
<request_param galaxy_name="table" remote_name="hgta_track" missing="unknown table" />
<request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" />
<request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="bed" >
<request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="tabular" >
<data_type_translation>
<format galaxy_format="tabular" remote_format="primaryTable" />
<format galaxy_format="tabular" remote_format="selectedFields" />
<format galaxy_format="wig" remote_format="wigdata" />
<format galaxy_format="interval" remote_format="tab" />
<format galaxy_format="html" remote_format="hyperlinks" />
<format galaxy_format="fasta" remote_format="sequence" />
</data_type_translation>
</request_param>
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="bed" />
<data name="output" format="tabular" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>
tools/data_source/ucsc_tablebrowser_archaea.xml
+6 -2
View File
@@ -21,16 +21,20 @@
<request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
<request_param galaxy_name="table" remote_name="hgta_track" missing="" />
<request_param galaxy_name="description" remote_name="hgta_regionType" missing="" />
<request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="bed" >
<request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="tabular" >
<data_type_translation>
<format galaxy_format="tabular" remote_format="primaryTable" />
<format galaxy_format="tabular" remote_format="selectedFields" />
<format galaxy_format="wig" remote_format="wigdata" />
<format galaxy_format="interval" remote_format="tab" />
<format galaxy_format="html" remote_format="hyperlinks" />
<format galaxy_format="fasta" remote_format="sequence" />
</data_type_translation>
</request_param>
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="bed" />
<data name="output" format="tabular" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>
tools/data_source/ucsc_tablebrowser_test.xml
+6 -2
View File
@@ -21,16 +21,20 @@
<request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
<request_param galaxy_name="table" remote_name="hgta_track" missing="" />
<request_param galaxy_name="description" remote_name="hgta_regionType" missing="" />
<request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="bed" >
<request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="tabular" >
<data_type_translation>
<format galaxy_format="tabular" remote_format="primaryTable" />
<format galaxy_format="tabular" remote_format="selectedFields" />
<format galaxy_format="wig" remote_format="wigdata" />
<format galaxy_format="interval" remote_format="tab" />
<format galaxy_format="html" remote_format="hyperlinks" />
<format galaxy_format="fasta" remote_format="sequence" />
</data_type_translation>
</request_param>
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="bed" />
<data name="output" format="tabular" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>