diff --git a/client/galaxy/scripts/libs/jquery/jquery.complexify.js b/client/galaxy/scripts/libs/jquery/jquery.complexify.js deleted file mode 100644 index 9d09a8d61de..00000000000 --- a/client/galaxy/scripts/libs/jquery/jquery.complexify.js +++ /dev/null @@ -1,192 +0,0 @@ -/* - http://github.com/danpalmer/jquery.complexify.js - - This code is distributed under the WTFPL v2: -*/ -(function ($) { - - $.fn.extend({ - complexify: function(options, callback) { - - var MIN_COMPLEXITY = 49; // 12 chars with Upper, Lower and Number - var MAX_COMPLEXITY = 120; // 25 chars, all charsets - var CHARSETS = [ - // Commonly Used - //////////////////// - [0x0020, 0x0020], // Space - [0x0030, 0x0039], // Numbers - [0x0041, 0x005A], // Uppercase - [0x0061, 0x007A], // Lowercase - [0x0021, 0x002F], // Punctuation - [0x003A, 0x0040], // Punctuation - [0x005B, 0x0060], // Punctuation - [0x007B, 0x007E], // Punctuation - // Everything Else - //////////////////// - [0x0080, 0x00FF], // Latin-1 Supplement - [0x0100, 0x017F], // Latin Extended-A - [0x0180, 0x024F], // Latin Extended-B - [0x0250, 0x02AF], // IPA Extensions - [0x02B0, 0x02FF], // Spacing Modifier Letters - [0x0300, 0x036F], // Combining Diacritical Marks - [0x0370, 0x03FF], // Greek - [0x0400, 0x04FF], // Cyrillic - [0x0530, 0x058F], // Armenian - [0x0590, 0x05FF], // Hebrew - [0x0600, 0x06FF], // Arabic - [0x0700, 0x074F], // Syriac - [0x0780, 0x07BF], // Thaana - [0x0900, 0x097F], // Devanagari - [0x0980, 0x09FF], // Bengali - [0x0A00, 0x0A7F], // Gurmukhi - [0x0A80, 0x0AFF], // Gujarati - [0x0B00, 0x0B7F], // Oriya - [0x0B80, 0x0BFF], // Tamil - [0x0C00, 0x0C7F], // Telugu - [0x0C80, 0x0CFF], // Kannada - [0x0D00, 0x0D7F], // Malayalam - [0x0D80, 0x0DFF], // Sinhala - [0x0E00, 0x0E7F], // Thai - [0x0E80, 0x0EFF], // Lao - [0x0F00, 0x0FFF], // Tibetan - [0x1000, 0x109F], // Myanmar - [0x10A0, 0x10FF], // Georgian - [0x1100, 0x11FF], // Hangul Jamo - [0x1200, 0x137F], // Ethiopic - [0x13A0, 0x13FF], // Cherokee - [0x1400, 0x167F], // Unified Canadian Aboriginal Syllabics - [0x1680, 0x169F], // Ogham - [0x16A0, 0x16FF], // Runic - [0x1780, 0x17FF], // Khmer - [0x1800, 0x18AF], // Mongolian - [0x1E00, 0x1EFF], // Latin Extended Additional - [0x1F00, 0x1FFF], // Greek Extended - [0x2000, 0x206F], // General Punctuation - [0x2070, 0x209F], // Superscripts and Subscripts - [0x20A0, 0x20CF], // Currency Symbols - [0x20D0, 0x20FF], // Combining Marks for Symbols - [0x2100, 0x214F], // Letterlike Symbols - [0x2150, 0x218F], // Number Forms - [0x2190, 0x21FF], // Arrows - [0x2200, 0x22FF], // Mathematical Operators - [0x2300, 0x23FF], // Miscellaneous Technical - [0x2400, 0x243F], // Control Pictures - [0x2440, 0x245F], // Optical Character Recognition - [0x2460, 0x24FF], // Enclosed Alphanumerics - [0x2500, 0x257F], // Box Drawing - [0x2580, 0x259F], // Block Elements - [0x25A0, 0x25FF], // Geometric Shapes - [0x2600, 0x26FF], // Miscellaneous Symbols - [0x2700, 0x27BF], // Dingbats - [0x2800, 0x28FF], // Braille Patterns - [0x2E80, 0x2EFF], // CJK Radicals Supplement - [0x2F00, 0x2FDF], // Kangxi Radicals - [0x2FF0, 0x2FFF], // Ideographic Description Characters - [0x3000, 0x303F], // CJK Symbols and Punctuation - [0x3040, 0x309F], // Hiragana - [0x30A0, 0x30FF], // Katakana - [0x3100, 0x312F], // Bopomofo - [0x3130, 0x318F], // Hangul Compatibility Jamo - [0x3190, 0x319F], // Kanbun - [0x31A0, 0x31BF], // Bopomofo Extended - [0x3200, 0x32FF], // Enclosed CJK Letters and Months - [0x3300, 0x33FF], // CJK Compatibility - [0x3400, 0x4DB5], // CJK Unified Ideographs Extension A - [0x4E00, 0x9FFF], // CJK Unified Ideographs - [0xA000, 0xA48F], // Yi Syllables - [0xA490, 0xA4CF], // Yi Radicals - [0xAC00, 0xD7A3], // Hangul Syllables - [0xD800, 0xDB7F], // High Surrogates - [0xDB80, 0xDBFF], // High Private Use Surrogates - [0xDC00, 0xDFFF], // Low Surrogates - [0xE000, 0xF8FF], // Private Use - [0xF900, 0xFAFF], // CJK Compatibility Ideographs - [0xFB00, 0xFB4F], // Alphabetic Presentation Forms - [0xFB50, 0xFDFF], // Arabic Presentation Forms-A - [0xFE20, 0xFE2F], // Combining Half Marks - [0xFE30, 0xFE4F], // CJK Compatibility Forms - [0xFE50, 0xFE6F], // Small Form Variants - [0xFE70, 0xFEFE], // Arabic Presentation Forms-B - [0xFEFF, 0xFEFF], // Specials - [0xFF00, 0xFFEF], // Halfwidth and Fullwidth Forms - [0xFFF0, 0xFFFD] // Specials - ]; - - var defaults = { - minimumChars: 8, - strengthScaleFactor: 1, - bannedPasswords: window.COMPLEXIFY_BANLIST || [], - banMode: 'strict' // (strict|loose) - }; - - if($.isFunction(options) && !callback) { - callback = options; - options = {}; - } - - options = $.extend(defaults, options); - - function additionalComplexityForCharset(str, charset) { - for (var i = str.length - 1; i >= 0; i--) { - if (charset[0] <= str.charCodeAt(i) && str.charCodeAt(i) <= charset[1]) { - return charset[1] - charset[0] + 1; - } - } - return 0; - } - - function inBanlist(str) { - if (options.banMode === 'strict') { - for (var i = 0; i < options.bannedPasswords.length; i++) { - if (str.toLowerCase().indexOf(options.bannedPasswords[i].toLowerCase()) !== -1) { - return true; - } - } - return false; - } else { - return $.inArray(str, options.bannedPasswords) > -1 ? true : false; - } - } - - function evaluateSecurity() { - var password = $(this).val(); - var complexity = 0, valid = false; - - // Reset complexity to 0 when banned password is found - if (!inBanlist(password)) { - - // Add character complexity - for (var i = CHARSETS.length - 1; i >= 0; i--) { - complexity += additionalComplexityForCharset(password, CHARSETS[i]); - } - - } else { - complexity = 1; - } - - // Use natural log to produce linear scale - complexity = Math.log(Math.pow(complexity, password.length)) * (1/options.strengthScaleFactor); - - valid = (complexity > MIN_COMPLEXITY && password.length >= options.minimumChars); - - // Scale to percentage, so it can be used for a progress bar - complexity = (complexity / MAX_COMPLEXITY) * 100; - complexity = (complexity > 100) ? 100 : complexity; - - callback.call(this, valid, complexity); - } - - this.each(function () { - if($(this).val()) { - evaluateSecurity.apply(this); - } - }); - - return this.each(function () { - $(this).bind('keyup focus input propertychange mouseup', evaluateSecurity); - }); - - } - }); - -})(jQuery); diff --git a/doc/source/api/api.rst b/doc/source/api/api.rst deleted file mode 100644 index d7ae13cc564..00000000000 --- a/doc/source/api/api.rst +++ /dev/null @@ -1,348 +0,0 @@ -Galaxy API -========== - -annotations module ------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.annotations - :members: - :undoc-members: - :show-inheritance: - -authenticate module -------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.authenticate - :members: - :undoc-members: - :show-inheritance: - -configuration module --------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.configuration - :members: - :undoc-members: - :show-inheritance: - -dataset\_collections module ---------------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.dataset_collections - :members: - :undoc-members: - :show-inheritance: - -datasets module ---------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.datasets - :members: - :undoc-members: - :show-inheritance: - -datatypes module ----------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.datatypes - :members: - :undoc-members: - :show-inheritance: - -extended\_metadata module -------------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.extended_metadata - :members: - :undoc-members: - :show-inheritance: - -folder\_contents module ------------------------------------------------------ - -.. automodule:: galaxy.webapps.galaxy.api.folder_contents - :members: - :undoc-members: - :show-inheritance: - -folders module --------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.folders - :members: - :undoc-members: - :show-inheritance: - -forms module ------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.forms - :members: - :undoc-members: - :show-inheritance: - -genomes module --------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.genomes - :members: - :undoc-members: - :show-inheritance: - -group\_roles module -------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.group_roles - :members: - :undoc-members: - :show-inheritance: - -group\_users module -------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.group_users - :members: - :undoc-members: - :show-inheritance: - -groups module -------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.groups - :members: - :undoc-members: - :show-inheritance: - -histories module ----------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.histories - :members: - :undoc-members: - :show-inheritance: - -history\_contents module ------------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.history_contents - :members: - :undoc-members: - :show-inheritance: - -item\_tags module ------------------------------------------------ - -.. automodule:: galaxy.webapps.galaxy.api.item_tags - :members: - :undoc-members: - :show-inheritance: - -job\_files module ------------------------------------------------ - -.. automodule:: galaxy.webapps.galaxy.api.job_files - :members: - :undoc-members: - :show-inheritance: - -jobs module ------------------------------------------ - -.. automodule:: galaxy.webapps.galaxy.api.jobs - :members: - :undoc-members: - :show-inheritance: - -lda\_datasets module --------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.lda_datasets - :members: - :undoc-members: - :show-inheritance: - -libraries module ----------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.libraries - :members: - :undoc-members: - :show-inheritance: - -library\_contents module ------------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.library_contents - :members: - :undoc-members: - :show-inheritance: - -metrics module --------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.metrics - :members: - :undoc-members: - :show-inheritance: - -page\_revisions module ----------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.page_revisions - :members: - :undoc-members: - :show-inheritance: - -pages module ------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.pages - :members: - :undoc-members: - :show-inheritance: - -provenance module ------------------------------------------------ - -.. automodule:: galaxy.webapps.galaxy.api.provenance - :members: - :undoc-members: - :show-inheritance: - -quotas module -------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.quotas - :members: - :undoc-members: - :show-inheritance: - -remote\_files module --------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.remote_files - :members: - :undoc-members: - :show-inheritance: - -request\_types module ---------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.request_types - :members: - :undoc-members: - :show-inheritance: - -requests module ---------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.requests - :members: - :undoc-members: - :show-inheritance: - -roles module ------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.roles - :members: - :undoc-members: - :show-inheritance: - -samples module --------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.samples - :members: - :undoc-members: - :show-inheritance: - -search module -------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.search - :members: - :undoc-members: - :show-inheritance: - -tool\_data module ------------------------------------------------ - -.. automodule:: galaxy.webapps.galaxy.api.tool_data - :members: - :undoc-members: - :show-inheritance: - -tool\_dependencies module -------------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.tool_dependencies - :members: - :undoc-members: - :show-inheritance: - -tool\_shed\_repositories module -------------------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.tool_shed_repositories - :members: - :undoc-members: - :show-inheritance: - -tools module ------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.tools - :members: - :undoc-members: - :show-inheritance: - -toolshed module ---------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.toolshed - :members: - :undoc-members: - :show-inheritance: - -tours module ------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.tours - :members: - :undoc-members: - :show-inheritance: - -users module ------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.users - :members: - :undoc-members: - :show-inheritance: - -visualizations module ---------------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.visualizations - :members: - :undoc-members: - :show-inheritance: - -webhooks module ---------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.webhooks - :members: - :undoc-members: - :show-inheritance: - -workflows module ----------------------------------------------- - -.. automodule:: galaxy.webapps.galaxy.api.workflows - :members: - :undoc-members: - :show-inheritance: - - diff --git a/doc/source/api/ts_api.rst b/doc/source/api/ts_api.rst deleted file mode 100644 index c8257587a17..00000000000 --- a/doc/source/api/ts_api.rst +++ /dev/null @@ -1,68 +0,0 @@ -Tool Shed API -============= - -authenticate module ------------------------------------------------------ - -.. automodule:: galaxy.webapps.tool_shed.api.authenticate - :members: - :undoc-members: - :show-inheritance: - -categories module ---------------------------------------------------- - -.. automodule:: galaxy.webapps.tool_shed.api.categories - :members: - :undoc-members: - :show-inheritance: - -configuration module ------------------------------------------------------- - -.. automodule:: galaxy.webapps.tool_shed.api.configuration - :members: - :undoc-members: - :show-inheritance: - -groups module ------------------------------------------------ - -.. automodule:: galaxy.webapps.tool_shed.api.groups - :members: - :undoc-members: - :show-inheritance: - -repositories module ------------------------------------------------------ - -.. automodule:: galaxy.webapps.tool_shed.api.repositories - :members: - :undoc-members: - :show-inheritance: - -repository\_revisions module --------------------------------------------------------------- - -.. automodule:: galaxy.webapps.tool_shed.api.repository_revisions - :members: - :undoc-members: - :show-inheritance: - -tools module ----------------------------------------------- - -.. automodule:: galaxy.webapps.tool_shed.api.tools - :members: - :undoc-members: - :show-inheritance: - -users module ----------------------------------------------- - -.. automodule:: galaxy.webapps.tool_shed.api.users - :members: - :undoc-members: - :show-inheritance: - -