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Migrate cuffcompare, cuffdiff, cufflinks, and cuffmerge from the distribution to the tool shed. Update the 'Review migration stages' layout.

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Dave Bouvier
2013-10-01 13:54:57 -04:00
parent d99a4bda60
commit 695aa8f44d
11 changed files with 219 additions and 1486 deletions
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scripts/migrate_tools/0008_tools.xml
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@@ -15,6 +15,18 @@
<repository owner="devteam" changeset_revision="4a32700dcaa2" name="ctd_batch" description="Galaxy wrappers for the tool CTD: analysis of chemicals, diseases, or genes">
<tool id="ctdBatch_1" version="1.0.0" file="ctd.xml" />
</repository>
<repository owner="devteam" changeset_revision="9d35cf35634e" name="cuffcompare" description="Galaxy wrappers for the Cuffcompare tool.">
<tool id="cuffcompare" version="0.0.5" file="cuffcompare_wrapper.xml" />
</repository>
<repository owner="devteam" changeset_revision="0dabb2ed6eb1" name="cuffdiff" description="Galaxy wrappers for the Cuffdiff tool.">
<tool id="cuffdiff" version="0.0.6" file="cuffdiff_wrapper.xml" />
</repository>
<repository owner="devteam" changeset_revision="b50aacc8ae49" name="cufflinks" description="Galaxy wrappers for the Cufflinks tool.">
<tool id="cufflinks" version="0.0.6" file="cufflinks_wrapper.xml" />
</repository>
<repository owner="devteam" changeset_revision="dbbd37e013aa" name="cuffmerge" description="Galaxy wrappers for the Cuffmerge tool.">
<tool id="cuffmerge" version="0.0.5" file="cuffmerge_wrapper.xml" />
</repository>
<repository owner="devteam" changeset_revision="f16000dc644b" name="delete_overlapping_indels" description="Galaxy wrappers for the tool Delete Overlapping Indels: from a chromosome indels file">
<tool id="delete_overlapping_indels" version="1.0.0" file="delete_overlapping_indels.xml" />
</repository>