From 693e18cdc24f8b13bb0d80fdf985e0fa3ddbf245 Mon Sep 17 00:00:00 2001 From: Nicola Soranzo Date: Sun, 26 Jun 2016 10:16:51 -0400 Subject: [PATCH] Fix the fix --- lib/galaxy/datatypes/converters/interval_to_coverage.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/galaxy/datatypes/converters/interval_to_coverage.py b/lib/galaxy/datatypes/converters/interval_to_coverage.py index 93042b62bb3..47882f7be6a 100644 --- a/lib/galaxy/datatypes/converters/interval_to_coverage.py +++ b/lib/galaxy/datatypes/converters/interval_to_coverage.py @@ -133,7 +133,7 @@ if __name__ == "__main__": temp_file = tempfile.NamedTemporaryFile(mode="r") environ['LC_ALL'] = 'POSIX' commandline = "sort -f -n -k %d -k %d -k %d -o %s %s" % (chr_col_1 + 1, start_col_1 + 1, end_col_1 + 1, temp_file.name, in_fname) - errorcode, stdout = subprocess.check_call(commandline, shell=True) + subprocess.check_call(commandline, shell=True) coverage = CoverageWriter( out_stream=open(out_fname, "a"), chromCol=chr_col_2, positionCol=position_col_2,