diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 4c8ffbba7c4..12a4e202e70 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -1,6 +1,6 @@ --extra-index-url https://wheels.galaxyproject.org/simple -aiohttp==3.8.1 ; python_version >= "3.7" and python_version < "3.11" +aiohttp==3.8.3 ; python_version >= "3.7" and python_version < "3.11" aiosignal==1.2.0 ; python_version >= "3.7" and python_version < "3.11" alabaster==0.7.12 ; python_version >= "3.7" and python_version < "3.11" amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.11" @@ -33,7 +33,7 @@ defusedxml==0.7.1 ; python_version >= "3.7" and python_version < "3.11" deprecated==1.2.13 ; python_version >= "3.7" and python_version < "3.11" docutils==0.16 ; python_version >= "3.7" and python_version < "3.11" fluent-logger==0.10.0 ; python_version >= "3.7" and python_version < "3.11" -fonttools==4.37.2 ; python_version >= "3.7" and python_version < "3.11" +fonttools==4.37.3 ; python_version >= "3.7" and python_version < "3.11" frozenlist==1.3.1 ; python_version >= "3.7" and python_version < "3.11" future==0.18.2 ; python_version >= "3.7" and python_version < "3.11" h11==0.12.0 ; python_version >= "3.7" and python_version < "3.11" @@ -77,7 +77,7 @@ py==1.11.0 ; python_version >= "3.7" and python_version < "3.11" pycparser==2.21 ; python_version >= "3.7" and python_version < "3.11" pygithub==1.55 ; python_version >= "3.7" and python_version < "3.11" pygments==2.13.0 ; python_version >= "3.7" and python_version < "3.11" -pyjwt==2.4.0 ; python_version >= "3.7" and python_version < "3.11" +pyjwt==2.5.0 ; python_version >= "3.7" and python_version < "3.11" pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.11" pyparsing==3.0.9 ; python_version >= "3.7" and python_version < "3.11" pysocks==1.7.1 ; python_version >= "3.7" and python_version < "3.11" @@ -92,7 +92,7 @@ pytest-postgresql==4.1.1 ; python_version >= "3.7" and python_version < "3.11" pytest-shard==0.1.2 ; python_version >= "3.7" and python_version < "3.11" pytest==7.1.3 ; python_version >= "3.7" and python_version < "3.11" python-dateutil==2.8.2 ; python_version >= "3.7" and python_version < "3.11" -python-irodsclient==1.1.4 ; python_version >= "3.7" and python_version < "3.11" +python-irodsclient==1.1.5 ; python_version >= "3.7" and python_version < "3.11" pytz==2022.2.1 ; python_version >= "3.7" and python_version < "3.11" rdflib==6.0.2 ; python_version >= "3.7" and python_version < "3.11" recommonmark==0.7.1 ; python_version >= "3.7" and python_version < "3.11" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index 9ed5c04d422..1c9686bb086 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -1,6 +1,6 @@ attrs==22.1.0 flake8==5.0.4 -flake8-bugbear==22.9.11 +flake8-bugbear==22.9.23 importlib-metadata==4.2.0 mccabe==0.7.0 mypy==0.971 @@ -15,12 +15,12 @@ types-contextvars==2.4.7 types-cryptography==3.3.23 types-dataclasses==0.6.6 types-docutils==0.19.1 -types-Markdown==3.4.1 +types-Markdown==3.4.2 types-paramiko==2.11.6 types-pkg-resources==0.1.3 types-python-dateutil==2.8.19 types-PyYAML==6.0.11 -types-requests==2.28.10 +types-requests==2.28.11 types-six==1.16.19 types-urllib3==1.26.24 typing_extensions==4.3.0 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 6f32db7b198..af538c696f1 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -3,7 +3,7 @@ a2wsgi==1.6.0 ; python_version >= "3.7" and python_version < "3.11" adal==1.2.7 ; python_version >= "3.7" and python_version < "3.11" aiofiles==22.1.0 ; python_version >= "3.7" and python_version < "3.11" -aiohttp==3.8.1 ; python_version >= "3.7" and python_version < "3.11" +aiohttp==3.8.3 ; python_version >= "3.7" and python_version < "3.11" aiosignal==1.2.0 ; python_version >= "3.7" and python_version < "3.11" alembic==1.8.1 ; python_version >= "3.7" and python_version < "3.11" amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.11" @@ -66,7 +66,7 @@ galaxy2cwl==0.1.4 ; python_version >= "3.7" and python_version < "3.11" gravity==0.13.5 ; python_version >= "3.7" and python_version < "3.11" greenlet==1.1.3 ; python_version >= "3.7" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") and python_version < "3.11" gunicorn==20.1.0 ; python_version >= "3.7" and python_version < "3.11" -gxformat2==0.15.0 ; python_version >= "3.7" and python_version < "3.11" +gxformat2==0.16.0 ; python_version >= "3.7" and python_version < "3.11" h11==0.12.0 ; python_version >= "3.7" and python_version < "3.11" h5py==3.7.0 ; python_version >= "3.7" and python_version < "3.11" humanfriendly==10.0 ; python_version >= "3.7" and python_version < "3.11" @@ -82,12 +82,12 @@ kombu==5.2.4 ; python_version >= "3.7" and python_version < "3.11" lagom==1.7.1 ; python_version >= "3.7" and python_version < "3.11" lockfile==0.12.2 ; python_version >= "3.7" and python_version < "3.11" lxml==4.9.1 ; python_version >= "3.7" and python_version < "3.11" -mako==1.2.2 ; python_version >= "3.7" and python_version < "3.11" +mako==1.2.3 ; python_version >= "3.7" and python_version < "3.11" markdown==3.4.1 ; python_version >= "3.7" and python_version < "3.11" markupsafe==2.1.1 ; python_version >= "3.7" and python_version < "3.11" mercurial==6.2.2 ; python_version >= "3.7" and python_version < "3.11" mistune==0.8.4 ; python_version >= "3.7" and python_version < "3.11" -mrcfile==1.4.2 ; python_version >= "3.7" and python_version < "3.11" +mrcfile==1.4.3 ; python_version >= "3.7" and python_version < "3.11" msgpack==1.0.4 ; python_version >= "3.7" and python_version < "3.11" multidict==6.0.2 ; python_version >= "3.7" and python_version < "3.11" mypy-extensions==0.4.3 ; python_version >= "3.7" and python_version < "3.11" @@ -118,7 +118,7 @@ pydot==1.4.2 ; python_version >= "3.7" and python_version < "3.11" pyeventsystem==0.1.0 ; python_version >= "3.7" and python_version < "3.11" pyfaidx==0.7.1 ; python_version >= "3.7" and python_version < "3.11" pygments==2.13.0 ; python_version >= "3.7" and python_version < "3.11" -pyjwt==2.4.0 ; python_version >= "3.7" and python_version < "3.11" +pyjwt==2.5.0 ; python_version >= "3.7" and python_version < "3.11" pykwalify==1.8.0 ; python_version >= "3.7" and python_version < "3.11" pylibmagic==0.2.1 ; python_version >= "3.7" and python_version < "3.11" pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.11" @@ -134,7 +134,7 @@ python-multipart==0.0.5 ; python_version >= "3.7" and python_version < "3.11" python3-openid==3.2.0 ; python_version >= "3.7" and python_version < "3.11" pytz==2022.2.1 ; python_version >= "3.7" and python_version < "3.11" pyyaml==6.0 ; python_version >= "3.7" and python_version < "3.11" -pyzmq==24.0.0 ; python_version >= "3.7" and python_version < "3.11" +pyzmq==24.0.1 ; python_version >= "3.7" and python_version < "3.11" rdflib==6.0.2 ; python_version >= "3.7" and python_version < "3.11" refgenconf==0.12.2 ; python_version >= "3.7" and python_version < "3.11" repoze-lru==0.7 ; python_version >= "3.7" and python_version < "3.11" @@ -158,13 +158,13 @@ sortedcontainers==2.4.0 ; python_version >= "3.7" and python_version < "3.11" sqlalchemy-migrate==0.13.0 ; python_version >= "3.7" and python_version < "3.11" sqlalchemy==1.4.41 ; python_version >= "3.7" and python_version < "3.11" sqlitedict==2.0.0 ; python_version >= "3.7" and python_version < "3.11" -sqlparse==0.4.2 ; python_version >= "3.7" and python_version < "3.11" +sqlparse==0.4.3 ; python_version >= "3.7" and python_version < "3.11" starlette-context==0.3.4 ; python_version >= "3.7" and python_version < "3.11" starlette==0.20.4 ; python_version >= "3.7" and python_version < "3.11" supervisor==4.2.4 ; python_version >= "3.7" and python_version < "3.11" svgwrite==1.4.3 ; python_version >= "3.7" and python_version < "3.11" tempita==0.5.2 ; python_version >= "3.7" and python_version < "3.11" -tenacity==8.0.1 ; python_version >= "3.7" and python_version < "3.11" +tenacity==8.1.0 ; python_version >= "3.7" and python_version < "3.11" tifffile==2021.11.2 ; python_version >= "3.7" and python_version < "3.11" tinydb==4.7.0 ; python_version >= "3.7" and python_version < "3.11" tornado==6.2 ; python_version >= "3.7" and python_version < "3.11"