From 64fb5d15c136dec9fab58a026a513e0523b39ac7 Mon Sep 17 00:00:00 2001 From: Daniel Blankenberg Date: Mon, 20 Apr 2015 10:17:31 -0400 Subject: [PATCH] Fix for GenomeSpace Exporter no longer allowing filenames to contain slashes. --- tools/genomespace/genomespace_exporter.py | 1 + tools/genomespace/genomespace_exporter.xml | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/tools/genomespace/genomespace_exporter.py b/tools/genomespace/genomespace_exporter.py index ec88fa26af6..b739fff536b 100644 --- a/tools/genomespace/genomespace_exporter.py +++ b/tools/genomespace/genomespace_exporter.py @@ -213,6 +213,7 @@ def galaxy_code_get_genomespace_folders( genomespace_site='prod', trans=None, va def send_file_to_genomespace( genomespace_site, username, token, source_filename, target_directory, target_filename, file_type, content_type, log_filename ): + target_filename = target_filename.replace( '/', '-' ) # Slashes no longer allowed in filenames url_opener = get_cookie_opener( username, token ) genomespace_site_dict = get_genomespace_site_urls()[ genomespace_site ] dm_url = genomespace_site_dict['dmServer'] diff --git a/tools/genomespace/genomespace_exporter.xml b/tools/genomespace/genomespace_exporter.xml index 1f9561e11dc..fb08888efa9 100644 --- a/tools/genomespace/genomespace_exporter.xml +++ b/tools/genomespace/genomespace_exporter.xml @@ -1,5 +1,5 @@ - + - send data to GenomeSpace genomespace_exporter.py --genomespace_site "prod"