From 854b24bb009c46c8e48eb799aef3bf142610bcad Mon Sep 17 00:00:00 2001 From: John Chilton Date: Fri, 16 Dec 2016 08:24:05 -0500 Subject: [PATCH] Fix linting of gff_filter_by_attribute. Broken during security patching - Travis tests are failing now against dev. --- tools/filters/gff/gff_filter_by_attribute.py | 4 +++- tools/filters/gff/gff_filter_by_feature_count.py | 3 ++- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/tools/filters/gff/gff_filter_by_attribute.py b/tools/filters/gff/gff_filter_by_attribute.py index 605add34023..85d9359662e 100644 --- a/tools/filters/gff/gff_filter_by_attribute.py +++ b/tools/filters/gff/gff_filter_by_attribute.py @@ -6,8 +6,9 @@ from __future__ import division, print_function import sys -from json import loads + from ast import Module, parse, walk +from json import loads AST_NODE_TYPE_WHITELIST = [ 'Expr', 'Load', 'Str', 'Num', 'BoolOp', 'Compare', 'And', 'Eq', 'NotEq', @@ -152,6 +153,7 @@ def check_expression( text ): return True + # # Helper functions. # diff --git a/tools/filters/gff/gff_filter_by_feature_count.py b/tools/filters/gff/gff_filter_by_feature_count.py index 8b2ff9446bf..0f1743b04e7 100644 --- a/tools/filters/gff/gff_filter_by_feature_count.py +++ b/tools/filters/gff/gff_filter_by_feature_count.py @@ -9,10 +9,11 @@ from __future__ import print_function import sys +from ast import Module, parse, walk + from bx.intervals.io import GenomicInterval from galaxy.datatypes.util.gff_util import GFFReaderWrapper -from ast import Module, parse, walk AST_NODE_TYPE_WHITELIST = [ 'Expr', 'Load', 'Str', 'Num', 'BoolOp', 'Compare', 'And', 'Eq', 'NotEq',