From 0ecb4e7c595f7fb6cd6e648c4d770e1e97530424 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Wed, 7 Nov 2018 10:15:55 +0100 Subject: [PATCH 1/3] List tags as attribute of TestCollection --- lib/galaxy/tools/xsd/galaxy.xsd | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/lib/galaxy/tools/xsd/galaxy.xsd b/lib/galaxy/tools/xsd/galaxy.xsd index 93cb78ee2ff..47341a32327 100644 --- a/lib/galaxy/tools/xsd/galaxy.xsd +++ b/lib/galaxy/tools/xsd/galaxy.xsd @@ -1107,6 +1107,11 @@ non-optional composite inputs must be specified as part of the ``param``. Type of collection to create. + + + Comma separated list of tags to apply to the dataset (only works for elements of collections - e.g. ``element`` XML tags). + + From bff5d51245f76bfc0bbe5b71237b3709d9ff7079 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Wed, 7 Nov 2018 19:34:40 +0100 Subject: [PATCH 2/3] Use comma-separated instead of comma separated --- lib/galaxy/tools/xsd/galaxy.xsd | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/lib/galaxy/tools/xsd/galaxy.xsd b/lib/galaxy/tools/xsd/galaxy.xsd index 47341a32327..2f50147a545 100644 --- a/lib/galaxy/tools/xsd/galaxy.xsd +++ b/lib/galaxy/tools/xsd/galaxy.xsd @@ -347,7 +347,7 @@ Read more about configuring Galaxy to run Docker jobs - A comma separated list of data inputs to split for job parallelization. + A comma-separated list of data inputs to split for job parallelization. @@ -362,7 +362,7 @@ Read more about configuring Galaxy to run Docker jobs - A comma separated list of data inputs that should not be split for this tool, Galaxy will infer this if not present and so this potentially never needs to be set. + A comma-separated list of data inputs that should not be split for this tool, Galaxy will infer this if not present and so this potentially never needs to be set. @@ -2360,7 +2360,7 @@ file. Use the file extension. This is only valid if ``type`` is ``data_collection``. Restrict the kind of collection that can be consumed by this parameter (e.g. ``paired``, ``list:paired``, ``list``). Multiple such collection types can be specified here -as a comma separated list. +as a comma-separated list. ]]> From 5e098857e5dee703741e070e24a40235fb5deff2 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Wed, 7 Nov 2018 20:08:21 +0100 Subject: [PATCH 3/3] Display test collection input in documentation --- doc/schema_template.md | 1 + 1 file changed, 1 insertion(+) diff --git a/doc/schema_template.md b/doc/schema_template.md index dbf34c1859d..0b27c4a004b 100644 --- a/doc/schema_template.md +++ b/doc/schema_template.md @@ -73,6 +73,7 @@ $tag:tool|outputs|collection|discover_datasets://complexType[@name='OutputCollec $tag:tool|tests://complexType[@name='Tests'] $tag:tool|tests|test://complexType[@name='Test'] $tag:tool|tests|test|param://complexType[@name='TestParam'] +$tag:tool|tests|test|param|collection://complexType[@name='TestCollection'] $tag:tool|tests|test|repeat://complexType[@name='TestRepeat'] $tag:tool|tests|test|section://complexType[@name='TestSection'] $tag:tool|tests|test|conditional://complexType[@name='TestConditional']