From 5ba3755ad6917675145ea3cb61409a9e82438dfe Mon Sep 17 00:00:00 2001
From: Wen-Yu Chung <wychung@bx.psu.edu>
Date: Tue, 25 Mar 2008 22:09:54 +0000
Subject: [PATCH] add functional test data for megablast xml parser. the
 functional test is failed due to unknown reasons.

---
 test-data/megablast_xml_parser_test1.txt | 4117 ++++++++++++++++++++++
 1 file changed, 4117 insertions(+)
 create mode 100644 test-data/megablast_xml_parser_test1.txt

diff --git a/test-data/megablast_xml_parser_test1.txt b/test-data/megablast_xml_parser_test1.txt
new file mode 100644
index 00000000000..356bb1aefb3
--- /dev/null
+++ b/test-data/megablast_xml_parser_test1.txt
@@ -0,0 +1,4117 @@
+<?xml version="1.0"?>
+<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
+<BlastOutput>
+  <BlastOutput_program>blastn</BlastOutput_program>
+  <BlastOutput_version>blastn 2.2.17 [Aug-26-2007]</BlastOutput_version>
+  <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~&quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs&quot;,  Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
+  <BlastOutput_db>Ecoli.fa</BlastOutput_db>
+  <BlastOutput_query-ID>lcl|1_0</BlastOutput_query-ID>
+  <BlastOutput_query-def>0_0.666667</BlastOutput_query-def>
+  <BlastOutput_query-len>30</BlastOutput_query-len>
+  <BlastOutput_param>
+    <Parameters>
+      <Parameters_expect>10</Parameters_expect>
+      <Parameters_sc-match>1</Parameters_sc-match>
+      <Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
+      <Parameters_gap-open>0</Parameters_gap-open>
+      <Parameters_gap-extend>0</Parameters_gap-extend>
+      <Parameters_filter>F</Parameters_filter>
+    </Parameters>
+  </BlastOutput_param>
+  <BlastOutput_iterations>
+    <Iteration>
+      <Iteration_iter-num>1</Iteration_iter-num>
+      <Iteration_query-ID>lcl|1_0</Iteration_query-ID>
+      <Iteration_query-def>0_0.666667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>5436010</Hsp_hit-from>
+              <Hsp_hit-to>5436039</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CGGACAGCGCCGCCACCAACAAAGCCACCA</Hsp_qseq>
+              <Hsp_hseq>CGGACAGCGCCGCCACCAACAAAGCCACCA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>2</Iteration_iter-num>
+      <Iteration_query-ID>lcl|2_0</Iteration_query-ID>
+      <Iteration_query-def>1_0.600000</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>696993</Hsp_hit-from>
+              <Hsp_hit-to>697022</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>AAAACACCGGATGCTCCGGCGCTGGCAGAT</Hsp_qseq>
+              <Hsp_hseq>AAAACACCGGATGCTCCGGCGCTGGCAGAT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>3</Iteration_iter-num>
+      <Iteration_query-ID>lcl|3_0</Iteration_query-ID>
+      <Iteration_query-def>2_0.400000</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>4100018</Hsp_hit-from>
+              <Hsp_hit-to>4100047</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TTTGCTTTTAGTACACCGGATTCAGAACCA</Hsp_qseq>
+              <Hsp_hseq>TTTGCTTTTAGTACACCGGATTCAGAACCA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>4</Iteration_iter-num>
+      <Iteration_query-ID>lcl|4_0</Iteration_query-ID>
+      <Iteration_query-def>3_0.566667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
+              <Hsp_query-to>1</Hsp_query-to>
+              <Hsp_hit-from>2305844</Hsp_hit-from>
+              <Hsp_hit-to>2305873</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CCGTCCAGAAAGGTGTATTCATGGGGACGG</Hsp_qseq>
+              <Hsp_hseq>CCGTCCAGAAAGGTGTATTCATGGGGACGG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>5</Iteration_iter-num>
+      <Iteration_query-ID>lcl|5_0</Iteration_query-ID>
+      <Iteration_query-def>4_0.766667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>3457901</Hsp_hit-from>
+              <Hsp_hit-to>3457930</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CACGCTACGTGCGCCCCCGCCCAGAAGGCG</Hsp_qseq>
+              <Hsp_hseq>CACGCTACGTGCGCCCCCGCCCAGAAGGCG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>6</Iteration_iter-num>
+      <Iteration_query-ID>lcl|6_0</Iteration_query-ID>
+      <Iteration_query-def>5_0.533333</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
+              <Hsp_query-to>1</Hsp_query-to>
+              <Hsp_hit-from>1264131</Hsp_hit-from>
+              <Hsp_hit-to>1264160</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_qseq>
+              <Hsp_hseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>2</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
+              <Hsp_query-to>1</Hsp_query-to>
+              <Hsp_hit-from>1636485</Hsp_hit-from>
+              <Hsp_hit-to>1636514</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_qseq>
+              <Hsp_hseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>3</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>2318694</Hsp_hit-from>
+              <Hsp_hit-to>2318723</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_qseq>
+              <Hsp_hseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>4</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>2777043</Hsp_hit-from>
+              <Hsp_hit-to>2777072</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_qseq>
+              <Hsp_hseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>7</Iteration_iter-num>
+      <Iteration_query-ID>lcl|7_0</Iteration_query-ID>
+      <Iteration_query-def>6_0.533333</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1185124</Hsp_hit-from>
+              <Hsp_hit-to>1185153</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TAAGCCGTTACTGGCAGCAAGTGCAGGCAA</Hsp_qseq>
+              <Hsp_hseq>TAAGCCGTTACTGGCAGCAAGTGCAGGCAA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>8</Iteration_iter-num>
+      <Iteration_query-ID>lcl|8_0</Iteration_query-ID>
+      <Iteration_query-def>7_0.400000</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>2458203</Hsp_hit-from>
+              <Hsp_hit-to>2458232</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TGAATTTACCGTTATCTATCTTGCCTGCCT</Hsp_qseq>
+              <Hsp_hseq>TGAATTTACCGTTATCTATCTTGCCTGCCT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>10</Iteration_iter-num>
+      <Iteration_query-ID>lcl|10_0</Iteration_query-ID>
+      <Iteration_query-def>9_0.400000</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>5286666</Hsp_hit-from>
+              <Hsp_hit-to>5286695</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GCGTTTTGCTAAACTTCTGCCGGAATATAA</Hsp_qseq>
+              <Hsp_hseq>GCGTTTTGCTAAACTTCTGCCGGAATATAA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>11</Iteration_iter-num>
+      <Iteration_query-ID>lcl|11_0</Iteration_query-ID>
+      <Iteration_query-def>10_0.500000</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>2787672</Hsp_hit-from>
+              <Hsp_hit-to>2787701</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>AAAGAGGCGAGCAGAGTAAAACGCAGGCAA</Hsp_qseq>
+              <Hsp_hseq>AAAGAGGCGAGCAGAGTAAAACGCAGGCAA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>13</Iteration_iter-num>
+      <Iteration_query-ID>lcl|13_0</Iteration_query-ID>
+      <Iteration_query-def>12_0.700000</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>4116145</Hsp_hit-from>
+              <Hsp_hit-to>4116174</Hsp_hit-to>
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+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GCGGACGATCTTCACGGTCGCCACGCGGAC</Hsp_qseq>
+              <Hsp_hseq>GCGGACGATCTTCACGGTCGCCACGCGGAC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
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+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>14</Iteration_iter-num>
+      <Iteration_query-ID>lcl|14_0</Iteration_query-ID>
+      <Iteration_query-def>13_0.533333</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>5442351</Hsp_hit-from>
+              <Hsp_hit-to>5442380</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TTCTTGTTGGATGGCATACTCCGGCAGCCA</Hsp_qseq>
+              <Hsp_hseq>TTCTTGTTGGATGGCATACTCCGGCAGCCA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
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+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
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+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>15</Iteration_iter-num>
+      <Iteration_query-ID>lcl|15_0</Iteration_query-ID>
+      <Iteration_query-def>14_0.666667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
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+        <Hit>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
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+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>4626492</Hsp_hit-from>
+              <Hsp_hit-to>4626521</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>ACCCCGATATCGTCGCAGGCGTTGCCGCAC</Hsp_qseq>
+              <Hsp_hseq>ACCCCGATATCGTCGCAGGCGTTGCCGCAC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>16</Iteration_iter-num>
+      <Iteration_query-ID>lcl|16_0</Iteration_query-ID>
+      <Iteration_query-def>15_0.666667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>346897</Hsp_hit-from>
+              <Hsp_hit-to>346926</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq>
+              <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
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+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
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+              <Hsp_hit-from>1466536</Hsp_hit-from>
+              <Hsp_hit-to>1466565</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GAAGCGCCTCTTCCAGCGGAGACAGCAGCC</Hsp_qseq>
+              <Hsp_hseq>GAAGCGCCTCTTCCAGCGGAGACAGCAGCC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
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+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1750132</Hsp_hit-from>
+              <Hsp_hit-to>1750161</Hsp_hit-to>
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+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq>
+              <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>4</Hsp_num>
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+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1908046</Hsp_hit-from>
+              <Hsp_hit-to>1908075</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq>
+              <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
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+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>2279107</Hsp_hit-from>
+              <Hsp_hit-to>2279136</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
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+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq>
+              <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
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+              <Hsp_hit-from>2813407</Hsp_hit-from>
+              <Hsp_hit-to>2813436</Hsp_hit-to>
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+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq>
+              <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq>
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+            </Hsp>
+            <Hsp>
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+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>3939162</Hsp_hit-from>
+              <Hsp_hit-to>3939191</Hsp_hit-to>
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+              <Hsp_hit-frame>1</Hsp_hit-frame>
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+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq>
+              <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>8</Hsp_num>
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+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>4656510</Hsp_hit-from>
+              <Hsp_hit-to>4656539</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq>
+              <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>17</Iteration_iter-num>
+      <Iteration_query-ID>lcl|17_0</Iteration_query-ID>
+      <Iteration_query-def>16_0.566667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>2595157</Hsp_hit-from>
+              <Hsp_hit-to>2595186</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>ATGTCCTGATCGAGCGGCGTTTTACCGACC</Hsp_qseq>
+              <Hsp_hseq>ATGTCCTGATCGAGCGGCGTTTTACCGACC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>18</Iteration_iter-num>
+      <Iteration_query-ID>lcl|18_0</Iteration_query-ID>
+      <Iteration_query-def>17_0.533333</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>717743</Hsp_hit-from>
+              <Hsp_hit-to>717772</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GGTGTTGAGTGTCCAGGTAATACGCTCTCG</Hsp_qseq>
+              <Hsp_hseq>GGTGTTGAGTGTCCAGGTAATACGCTCTCG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>20</Iteration_iter-num>
+      <Iteration_query-ID>lcl|20_0</Iteration_query-ID>
+      <Iteration_query-def>19_0.566667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1237938</Hsp_hit-from>
+              <Hsp_hit-to>1237967</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GTTGTAAGCGTCAGAACCGATGCGGTCGGT</Hsp_qseq>
+              <Hsp_hseq>GTTGTAAGCGTCAGAACCGATGCGGTCGGT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>21</Iteration_iter-num>
+      <Iteration_query-ID>lcl|21_0</Iteration_query-ID>
+      <Iteration_query-def>20_0.566667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>4792054</Hsp_hit-from>
+              <Hsp_hit-to>4792083</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CGACATCCTGTAGGCTGGCTTCAATGCGAC</Hsp_qseq>
+              <Hsp_hseq>CGACATCCTGTAGGCTGGCTTCAATGCGAC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>22</Iteration_iter-num>
+      <Iteration_query-ID>lcl|22_0</Iteration_query-ID>
+      <Iteration_query-def>21_0.733333</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>269757</Hsp_hit-from>
+              <Hsp_hit-to>269786</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_qseq>
+              <Hsp_hseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>2</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>274007</Hsp_hit-from>
+              <Hsp_hit-to>274036</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_qseq>
+              <Hsp_hseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
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+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>23</Iteration_iter-num>
+      <Iteration_query-ID>lcl|23_0</Iteration_query-ID>
+      <Iteration_query-def>22_0.566667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>2706426</Hsp_hit-from>
+              <Hsp_hit-to>2706455</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CGGTATTCCTCAGTTCTCGCTGCATGCCTG</Hsp_qseq>
+              <Hsp_hseq>CGGTATTCCTCAGTTCTCGCTGCATGCCTG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
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+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>24</Iteration_iter-num>
+      <Iteration_query-ID>lcl|24_0</Iteration_query-ID>
+      <Iteration_query-def>23_0.600000</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1512107</Hsp_hit-from>
+              <Hsp_hit-to>1512136</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TTGCCGTTACGCACCACGCCTTCAGTAGCG</Hsp_qseq>
+              <Hsp_hseq>TTGCCGTTACGCACCACGCCTTCAGTAGCG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
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+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>25</Iteration_iter-num>
+      <Iteration_query-ID>lcl|25_0</Iteration_query-ID>
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+      <Iteration_query-len>30</Iteration_query-len>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_hit-from>2032108</Hsp_hit-from>
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+              <Hsp_qseq>CGCGGGCGCACCACGTCGCTGCTGCTGTTC</Hsp_qseq>
+              <Hsp_hseq>CGCGGGCGCACCACGTCGCTGCTGCTGTTC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
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+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
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+      <Iteration_query-def>25_0.266667</Iteration_query-def>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TTTTGGGAAAACTAAATACGCATCAAAAAT</Hsp_qseq>
+              <Hsp_hseq>TTTTGGGAAAACTAAATACGCATCAAAAAT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
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+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
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+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
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+              <Hsp_hit-to>3112580</Hsp_hit-to>
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+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CAACGAGGCGCTACCGAGTTGTTCAATGCG</Hsp_qseq>
+              <Hsp_hseq>CAACGAGGCGCTACCGAGTTGTTCAATGCG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
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+      <Iteration_query-ID>lcl|29_0</Iteration_query-ID>
+      <Iteration_query-def>28_0.666667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
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+              <Hsp_hit-from>4405442</Hsp_hit-from>
+              <Hsp_hit-to>4405471</Hsp_hit-to>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CGCTCAATCTGCTCGCGCCTGGCTGGCGTT</Hsp_qseq>
+              <Hsp_hseq>CGCTCAATCTGCTCGCGCCTGGCTGGCGTT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
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+      <Iteration_stat>
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+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+    </Iteration>
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+      <Iteration_query-ID>lcl|30_0</Iteration_query-ID>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CTCGTCCGGCGGGCGGTTTTGCCGACAAGG</Hsp_qseq>
+              <Hsp_hseq>CTCGTCCGGCGGGCGGTTTTGCCGACAAGG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
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+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+    </Iteration>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_score>30</Hsp_score>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TGAGGATGGTCCTCTGACTCTGCAGGCGCA</Hsp_qseq>
+              <Hsp_hseq>TGAGGATGGTCCTCTGACTCTGCAGGCGCA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
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+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+    </Iteration>
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+      <Iteration_query-ID>lcl|34_0</Iteration_query-ID>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TAGTAACCCTTTAATAAGATTGTCGATTAG</Hsp_qseq>
+              <Hsp_hseq>TAGTAACCCTTTAATAAGATTGTCGATTAG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
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+        </Hit>
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+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_qseq>TGATGTTAAATGCATGGCACCTGCCGGTGC</Hsp_qseq>
+              <Hsp_hseq>TGATGTTAAATGCATGGCACCTGCCGGTGC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
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+        </Hit>
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+              <Hsp_qseq>ACTGCTTTGCCGAGATATTCGAGGTTAACC</Hsp_qseq>
+              <Hsp_hseq>ACTGCTTTGCCGAGATATTCGAGGTTAACC</Hsp_hseq>
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+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>42</Iteration_iter-num>
+      <Iteration_query-ID>lcl|42_0</Iteration_query-ID>
+      <Iteration_query-def>41_0.566667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>789086</Hsp_hit-from>
+              <Hsp_hit-to>789115</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>AGCTGACGGTCAGCAGGGATACTTCCTGCA</Hsp_qseq>
+              <Hsp_hseq>AGCTGACGGTCAGCAGGGATACTTCCTGCA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>43</Iteration_iter-num>
+      <Iteration_query-ID>lcl|43_0</Iteration_query-ID>
+      <Iteration_query-def>42_0.566667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1714771</Hsp_hit-from>
+              <Hsp_hit-to>1714800</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GCAGTGACTACATCCGCGAGGTGAATGTGG</Hsp_qseq>
+              <Hsp_hseq>GCAGTGACTACATCCGCGAGGTGAATGTGG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>44</Iteration_iter-num>
+      <Iteration_query-ID>lcl|44_0</Iteration_query-ID>
+      <Iteration_query-def>43_0.466667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>4272582</Hsp_hit-from>
+              <Hsp_hit-to>4272611</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GCTTTTTCCAGCATCAACGCCACTGAACAA</Hsp_qseq>
+              <Hsp_hseq>GCTTTTTCCAGCATCAACGCCACTGAACAA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>45</Iteration_iter-num>
+      <Iteration_query-ID>lcl|45_0</Iteration_query-ID>
+      <Iteration_query-def>44_0.433333</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>5481023</Hsp_hit-from>
+              <Hsp_hit-to>5481052</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>AAAGTGGTAGATAACGTGGTGCAGACTATG</Hsp_qseq>
+              <Hsp_hseq>AAAGTGGTAGATAACGTGGTGCAGACTATG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>46</Iteration_iter-num>
+      <Iteration_query-ID>lcl|46_0</Iteration_query-ID>
+      <Iteration_query-def>45_0.500000</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
+              <Hsp_query-to>1</Hsp_query-to>
+              <Hsp_hit-from>1271829</Hsp_hit-from>
+              <Hsp_hit-to>1271858</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_qseq>
+              <Hsp_hseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>2</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
+              <Hsp_query-to>1</Hsp_query-to>
+              <Hsp_hit-from>1357952</Hsp_hit-from>
+              <Hsp_hit-to>1357981</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_qseq>
+              <Hsp_hseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>3</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>2310674</Hsp_hit-from>
+              <Hsp_hit-to>2310703</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq>
+              <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>4</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>2769319</Hsp_hit-from>
+              <Hsp_hit-to>2769348</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq>
+              <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>5</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>2991293</Hsp_hit-from>
+              <Hsp_hit-to>2991322</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq>
+              <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>47</Iteration_iter-num>
+      <Iteration_query-ID>lcl|47_0</Iteration_query-ID>
+      <Iteration_query-def>46_0.466667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1080570</Hsp_hit-from>
+              <Hsp_hit-to>1080599</Hsp_hit-to>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_qseq>
+              <Hsp_hseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
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+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1476177</Hsp_hit-from>
+              <Hsp_hit-to>1476206</Hsp_hit-to>
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+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_qseq>
+              <Hsp_hseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
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+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
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+      <Iteration_query-ID>lcl|48_0</Iteration_query-ID>
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+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
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+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
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+              <Hsp_query-to>30</Hsp_query-to>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>ACAATGCAACCAGACCAGCCCGGATCGATA</Hsp_qseq>
+              <Hsp_hseq>ACAATGCAACCAGACCAGCCCGGATCGATA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>50</Iteration_iter-num>
+      <Iteration_query-ID>lcl|50_0</Iteration_query-ID>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
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+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CGTTATACGGAACAACATTTAACTCCAGCG</Hsp_qseq>
+              <Hsp_hseq>CGTTATACGGAACAACATTTAACTCCAGCG</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
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+        <Statistics>
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+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TTGCTGTTGCCATCGCTTTTCAGGACATAC</Hsp_qseq>
+              <Hsp_hseq>TTGCTGTTGCCATCGCTTTTCAGGACATAC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
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+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+    </Iteration>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CGACGGTATCGGTACGCAGATTGTGATGGA</Hsp_qseq>
+              <Hsp_hseq>CGACGGTATCGGTACGCAGATTGTGATGGA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
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+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>ATGAGCATCAACATCGAAATCTCAAACCAA</Hsp_qseq>
+              <Hsp_hseq>ATGAGCATCAACATCGAAATCTCAAACCAA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
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+        </Hit>
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+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_qseq>GTATTCTTCATTGATTTGTAAGCGGGTACC</Hsp_qseq>
+              <Hsp_hseq>GTATTCTTCATTGATTTGTAAGCGGGTACC</Hsp_hseq>
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+          <Statistics_entropy>1.31</Statistics_entropy>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_qseq>AAGCGCTGTTCAACATAAATTGGCTGACGG</Hsp_qseq>
+              <Hsp_hseq>AAGCGCTGTTCAACATAAATTGGCTGACGG</Hsp_hseq>
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+            </Hsp>
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+              <Hsp_qseq>AACCGTCAGCTCTTTACGCAATATTTTGCC</Hsp_qseq>
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+              <Hsp_qseq>TAACCACTCTTATCATGATATGCAGATTTT</Hsp_qseq>
+              <Hsp_hseq>TAACCACTCTTATCATGATATGCAGATTTT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>62</Iteration_iter-num>
+      <Iteration_query-ID>lcl|62_0</Iteration_query-ID>
+      <Iteration_query-def>61_0.366667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1987157</Hsp_hit-from>
+              <Hsp_hit-to>1987186</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TCAGTTTGAAAGCTTTGTCAGCCGTTTTTT</Hsp_qseq>
+              <Hsp_hseq>TCAGTTTGAAAGCTTTGTCAGCCGTTTTTT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>63</Iteration_iter-num>
+      <Iteration_query-ID>lcl|63_0</Iteration_query-ID>
+      <Iteration_query-def>62_0.366667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1667830</Hsp_hit-from>
+              <Hsp_hit-to>1667859</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>AATCCTAAACCTAGGAATGCCAGAATATCT</Hsp_qseq>
+              <Hsp_hseq>AATCCTAAACCTAGGAATGCCAGAATATCT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>64</Iteration_iter-num>
+      <Iteration_query-ID>lcl|64_0</Iteration_query-ID>
+      <Iteration_query-def>63_0.566667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
+              <Hsp_query-to>1</Hsp_query-to>
+              <Hsp_hit-from>231418</Hsp_hit-from>
+              <Hsp_hit-to>231447</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq>
+              <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>2</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>3516862</Hsp_hit-from>
+              <Hsp_hit-to>3516891</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_qseq>
+              <Hsp_hseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>3</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>4226650</Hsp_hit-from>
+              <Hsp_hit-to>4226679</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_qseq>
+              <Hsp_hseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>4</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
+              <Hsp_query-to>1</Hsp_query-to>
+              <Hsp_hit-from>4808457</Hsp_hit-from>
+              <Hsp_hit-to>4808486</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq>
+              <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>5</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
+              <Hsp_query-to>1</Hsp_query-to>
+              <Hsp_hit-from>4904735</Hsp_hit-from>
+              <Hsp_hit-to>4904764</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq>
+              <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>6</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
+              <Hsp_query-to>1</Hsp_query-to>
+              <Hsp_hit-from>5048915</Hsp_hit-from>
+              <Hsp_hit-to>5048944</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq>
+              <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+            <Hsp>
+              <Hsp_num>7</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>30</Hsp_query-from>
+              <Hsp_query-to>1</Hsp_query-to>
+              <Hsp_hit-from>5089922</Hsp_hit-from>
+              <Hsp_hit-to>5089951</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>-1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq>
+              <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>65</Iteration_iter-num>
+      <Iteration_query-ID>lcl|65_0</Iteration_query-ID>
+      <Iteration_query-def>64_0.500000</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>5440369</Hsp_hit-from>
+              <Hsp_hit-to>5440398</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GAGATGACGGTTGCAGAGTCATGCGTTTGA</Hsp_qseq>
+              <Hsp_hseq>GAGATGACGGTTGCAGAGTCATGCGTTTGA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>66</Iteration_iter-num>
+      <Iteration_query-ID>lcl|66_0</Iteration_query-ID>
+      <Iteration_query-def>65_0.533333</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+            <Hsp>
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+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>3963858</Hsp_hit-from>
+              <Hsp_hit-to>3963887</Hsp_hit-to>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TCTGGATCACGCGCAAACACTGGCTATCGT</Hsp_qseq>
+              <Hsp_hseq>TCTGGATCACGCGCAAACACTGGCTATCGT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
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+          <Statistics_db-num>1</Statistics_db-num>
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+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
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+      <Iteration_query-ID>lcl|67_0</Iteration_query-ID>
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+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_qseq>TCTGCTTTAGCAAACAGAGTGTGGTCACGA</Hsp_qseq>
+              <Hsp_hseq>TCTGCTTTAGCAAACAGAGTGTGGTCACGA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
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+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>68</Iteration_iter-num>
+      <Iteration_query-ID>lcl|68_0</Iteration_query-ID>
+      <Iteration_query-def>67_0.400000</Iteration_query-def>
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+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_qseq>GCCTTTTGTCTGATCATCCACAATAATGAC</Hsp_qseq>
+              <Hsp_hseq>GCCTTTTGTCTGATCATCCACAATAATGAC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>69</Iteration_iter-num>
+      <Iteration_query-ID>lcl|69_0</Iteration_query-ID>
+      <Iteration_query-def>68_0.566667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
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+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>779994</Hsp_hit-from>
+              <Hsp_hit-to>780023</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>GAAGGATAGTTGGTCAGCAACACCAGCGGC</Hsp_qseq>
+              <Hsp_hseq>GAAGGATAGTTGGTCAGCAACACCAGCGGC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
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+      <Iteration_query-ID>lcl|71_0</Iteration_query-ID>
+      <Iteration_query-def>70_0.466667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+          <Hit_hsps>
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+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1317239</Hsp_hit-from>
+              <Hsp_hit-to>1317268</Hsp_hit-to>
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+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TGGTGTTCAGCATCTCAACGGTAATTCGCT</Hsp_qseq>
+              <Hsp_hseq>TGGTGTTCAGCATCTCAACGGTAATTCGCT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
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+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>72</Iteration_iter-num>
+      <Iteration_query-ID>lcl|72_0</Iteration_query-ID>
+      <Iteration_query-def>71_0.533333</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
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+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
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+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>5080463</Hsp_hit-from>
+              <Hsp_hit-to>5080492</Hsp_hit-to>
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+              <Hsp_hit-frame>1</Hsp_hit-frame>
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+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CAGGATGCAAACTGCCGGGAGATCCAGTTA</Hsp_qseq>
+              <Hsp_hseq>CAGGATGCAAACTGCCGGGAGATCCAGTTA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
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+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>73</Iteration_iter-num>
+      <Iteration_query-ID>lcl|73_0</Iteration_query-ID>
+      <Iteration_query-def>72_0.533333</Iteration_query-def>
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+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>3605409</Hsp_hit-from>
+              <Hsp_hit-to>3605438</Hsp_hit-to>
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+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>AACTGGAAGGGCTTGGGATGACACAACAGC</Hsp_qseq>
+              <Hsp_hseq>AACTGGAAGGGCTTGGGATGACACAACAGC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
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+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+    </Iteration>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TTTAAGCGCCAACCAGGCTTCTTTGGTTGC</Hsp_qseq>
+              <Hsp_hseq>TTTAAGCGCCAACCAGGCTTCTTTGGTTGC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
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+        </Hit>
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+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+    </Iteration>
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+              <Hsp_qseq>ATAACCCTCTGCAACCGCCGCTTCAGCAAA</Hsp_qseq>
+              <Hsp_hseq>ATAACCCTCTGCAACCGCCGCTTCAGCAAA</Hsp_hseq>
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+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TGAAGCCGTACAACGGGCGCTGGAATTCGC</Hsp_qseq>
+              <Hsp_hseq>TGAAGCCGTACAACGGGCGCTGGAATTCGC</Hsp_hseq>
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+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+    </Iteration>
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+              <Hsp_qseq>CGGAGTATCCGTTCCCCAACGACAAGCATC</Hsp_qseq>
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+        </Statistics>
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+    </Iteration>
+    <Iteration>
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+              <Hsp_hit-from>4387420</Hsp_hit-from>
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+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>AATACCGGGAAGAGACAACGGGGTCTCTTT</Hsp_qseq>
+              <Hsp_hseq>AATACCGGGAAGAGACAACGGGGTCTCTTT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
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+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>82</Iteration_iter-num>
+      <Iteration_query-ID>lcl|82_0</Iteration_query-ID>
+      <Iteration_query-def>81_0.433333</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
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+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
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+              <Hsp_hit-to>1037179</Hsp_hit-to>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>ATTAATGTTGCCGGCACAACATAATAGGGC</Hsp_qseq>
+              <Hsp_hseq>ATTAATGTTGCCGGCACAACATAATAGGGC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
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+        <Statistics>
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+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>ACTGGGTTGCTCTGAACAAGAAAGGCGCTA</Hsp_qseq>
+              <Hsp_hseq>ACTGGGTTGCTCTGAACAAGAAAGGCGCTA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
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+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+    </Iteration>
+    <Iteration>
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+      <Iteration_query-ID>lcl|84_0</Iteration_query-ID>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CGCCAGGGACGTATCGCGTCGATATCTATT</Hsp_qseq>
+              <Hsp_hseq>CGCCAGGGACGTATCGCGTCGATATCTATT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
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+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
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+    </Iteration>
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+          <Hit_accession>0</Hit_accession>
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+              <Hsp_qseq>TGCTCGTTCCCGTCGTGATGAAGCTCGAAA</Hsp_qseq>
+              <Hsp_hseq>TGCTCGTTCCCGTCGTGATGAAGCTCGAAA</Hsp_hseq>
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+            </Hsp>
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+        </Hit>
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+        </Statistics>
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+              <Hsp_qseq>AGGAAAGCAAACAACACGACCACCATCAGC</Hsp_qseq>
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+      <Iteration_query-ID>lcl|95_0</Iteration_query-ID>
+      <Iteration_query-def>94_0.466667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>1813009</Hsp_hit-from>
+              <Hsp_hit-to>1813038</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>CCACGGTGATATCTGGTGCCATACTGATAA</Hsp_qseq>
+              <Hsp_hseq>CCACGGTGATATCTGGTGCCATACTGATAA</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>97</Iteration_iter-num>
+      <Iteration_query-ID>lcl|97_0</Iteration_query-ID>
+      <Iteration_query-def>96_0.533333</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>573782</Hsp_hit-from>
+              <Hsp_hit-to>573811</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TTGCCGGGAAGAGAGATATCAATGGCAGGC</Hsp_qseq>
+              <Hsp_hseq>TTGCCGGGAAGAGAGATATCAATGGCAGGC</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>98</Iteration_iter-num>
+      <Iteration_query-ID>lcl|98_0</Iteration_query-ID>
+      <Iteration_query-def>97_0.566667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>3570563</Hsp_hit-from>
+              <Hsp_hit-to>3570592</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>TGCGCCGCCGGATTGTTGCTCAACATGCTT</Hsp_qseq>
+              <Hsp_hseq>TGCGCCGCCGGATTGTTGCTCAACATGCTT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+    <Iteration>
+      <Iteration_iter-num>99</Iteration_iter-num>
+      <Iteration_query-ID>lcl|99_0</Iteration_query-ID>
+      <Iteration_query-def>98_0.366667</Iteration_query-def>
+      <Iteration_query-len>30</Iteration_query-len>
+      <Iteration_hits>
+        <Hit>
+          <Hit_num>1</Hit_num>
+          <Hit_id>gnl|BL_ORD_ID|0</Hit_id>
+          <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def>
+          <Hit_accession>0</Hit_accession>
+          <Hit_len>5528445</Hit_len>
+          <Hit_hsps>
+            <Hsp>
+              <Hsp_num>1</Hsp_num>
+              <Hsp_bit-score>59.96</Hsp_bit-score>
+              <Hsp_score>30</Hsp_score>
+              <Hsp_evalue>8.38112e-11</Hsp_evalue>
+              <Hsp_query-from>1</Hsp_query-from>
+              <Hsp_query-to>30</Hsp_query-to>
+              <Hsp_hit-from>4545136</Hsp_hit-from>
+              <Hsp_hit-to>4545165</Hsp_hit-to>
+              <Hsp_query-frame>1</Hsp_query-frame>
+              <Hsp_hit-frame>1</Hsp_hit-frame>
+              <Hsp_identity>30</Hsp_identity>
+              <Hsp_positive>30</Hsp_positive>
+              <Hsp_align-len>30</Hsp_align-len>
+              <Hsp_qseq>AACGCGCTAACCGCCAATAATAACAAAATT</Hsp_qseq>
+              <Hsp_hseq>AACGCGCTAACCGCCAATAATAACAAAATT</Hsp_hseq>
+              <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline>
+            </Hsp>
+          </Hit_hsps>
+        </Hit>
+      </Iteration_hits>
+      <Iteration_stat>
+        <Statistics>
+          <Statistics_db-num>1</Statistics_db-num>
+          <Statistics_db-len>5528445</Statistics_db-len>
+          <Statistics_hsp-len>0</Statistics_hsp-len>
+          <Statistics_eff-space>0</Statistics_eff-space>
+          <Statistics_kappa>0.711</Statistics_kappa>
+          <Statistics_lambda>1.374</Statistics_lambda>
+          <Statistics_entropy>1.31</Statistics_entropy>
+        </Statistics>
+      </Iteration_stat>
+    </Iteration>
+  </BlastOutput_iterations>
+</BlastOutput>