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Updates to documentation for Human Genome Variation tools

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Richard Burhans
2010-09-24 06:04:06 -04:00
parent 0fbab45d14
commit 5acffa2403
9 changed files with 92 additions and 61 deletions
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tools/evolution/codingSnps.xml
+7 -6
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@@ -45,16 +45,21 @@
<help>
.. class:: infomark
The build must be defined for the input files and must be the same for both files. Use the pencil icon to add the build to the files if necessary.
The build must be defined for the input files and must be the same for both files.
Use the pencil icon to add the build to the files if necessary.
-----
**Dataset formats**
The SNP dataset is in interval_ format with a column of SNPs as described below.
The SNP dataset is in interval_ format, with a column of SNPs as described below.
The gene dataset is in BED_ format with 12 columns.
The output dataset is also interval.
.. _interval: ./static/formatHelp.html#interval
.. _BED: ./static/formatHelp.html#bed
-----
**What it does**
@@ -76,10 +81,6 @@ The amino acids are listed with the reference amino acid first, then a colon,
and then the amino acids for the alleles. If a SNP is not in a coding region
or is synonymous then it is not included in the output file.
.. _BED: ./static/formatHelp.html#bed
.. _interval: ./static/formatHelp.html#interval
-----
**Example**