From 588567c27e6f18f1e0709a8af6e7d4cd02171a44 Mon Sep 17 00:00:00 2001
From: Greg Von Kuster <greg@bx.psu.edu>
Date: Mon, 18 Feb 2013 16:00:43 -0500
Subject: [PATCH] Display the Orphan column in the valid tool dependencies
 container in the tool shed.

---
 .../webapps/community/util/container_util.py     |  2 +-
 .../webapps/community/repository/common.mako     | 16 ++++++++++------
 2 files changed, 11 insertions(+), 7 deletions(-)

diff --git a/lib/galaxy/webapps/community/util/container_util.py b/lib/galaxy/webapps/community/util/container_util.py
index a5139a1863a..6c0fa04df0c 100644
--- a/lib/galaxy/webapps/community/util/container_util.py
+++ b/lib/galaxy/webapps/community/util/container_util.py
@@ -514,7 +514,7 @@ def build_tool_dependencies_folder( trans, folder_id, tool_dependencies, label='
                                               installation_status=None,
                                               repository_id=None,
                                               tool_dependency_id=None,
-                                              is_orphan=None )
+                                              is_orphan='Orphan' )
         folder.tool_dependencies.append( tool_dependency )
         is_orphan_description = "these dependencies may not be required by tools in this repository"
         for dependency_key, requirements_dict in tool_dependencies.items():
diff --git a/templates/webapps/community/repository/common.mako b/templates/webapps/community/repository/common.mako
index 517db2fe98e..d4adf976de2 100644
--- a/templates/webapps/community/repository/common.mako
+++ b/templates/webapps/community/repository/common.mako
@@ -628,13 +628,17 @@
             ${version_str | h}
         </${cell_type}>
         <${cell_type}>${tool_dependency.type | h}</${cell_type}>
-        %if trans.webapp.name == 'galaxy':
-            %if is_missing:
-                <${cell_type}>${tool_dependency.installation_status | h}</${cell_type}>
-            %elif tool_dependency.install_dir:
-                <${cell_type}>${tool_dependency.install_dir | h}</${cell_type}>
+        <${cell_type}>
+            %if trans.webapp.name == 'galaxy':
+                %if is_missing:
+                    ${tool_dependency.installation_status | h}
+                %elif tool_dependency.install_dir:
+                    ${tool_dependency.install_dir | h}
+                %endif
+            %else:
+                ${tool_dependency.is_orphan | h}
             %endif
-        %endif
+        </${cell_type}>
     </tr>
     <%
         my_row = row_counter.count