From 931a51c9cb5830c1ffc53bce66354789093da2ee Mon Sep 17 00:00:00 2001 From: James Taylor Date: Thu, 7 Aug 2008 19:28:42 -0400 Subject: [PATCH 1/4] Updating packed versions of javascripts. --- static/scripts/packed/IE7.js | 3 +-- static/scripts/packed/IE8.js | 3 +-- static/scripts/packed/cookie_set.js | 2 +- static/scripts/packed/galaxy.base.js | 2 +- static/scripts/packed/galaxy.panels.js | 2 +- static/scripts/packed/galaxy.ui.scrollPanel.js | 2 +- static/scripts/packed/galaxy.workflow_editor.canvas.js | 2 +- static/scripts/packed/ie7-recalc.js | 3 +-- static/scripts/packed/jquery.cookie.js | 2 +- static/scripts/packed/jquery.form.js | 2 +- static/scripts/packed/jquery.hoverIntent.js | 2 +- static/scripts/packed/jquery.json.js | 2 +- 12 files changed, 12 insertions(+), 15 deletions(-) diff --git a/static/scripts/packed/IE7.js b/static/scripts/packed/IE7.js index 9f2b47f3f90..4bd659cca95 100644 --- a/static/scripts/packed/IE7.js +++ b/static/scripts/packed/IE7.js @@ -1,2 +1 @@ -/* 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bk){b.style[c]=a.currentStyle[c];if(bk[c]!=null){a.runtimeStyle[c]=bk[c]}}b.style.display="block";b.style.position="relative";a.runtimeStyle.position="absolute";a.parentNode.insertBefore(b,a);b.appendChild(a)});function cf(){var f="xx-small,x-small,small,medium,large,x-large,xx-large".split(",");for(var g=0;g":"","\\/\\*[^*]*\\*+([^\\/][^*]*\\*+)*\\/":"","@(namespace|import)[^;\\n]+[;\\n]":"","'(\\\\.|[^'\\\\])*'":encodeString,'"(\\\\.|[^"\\\\])*"':encodeString,"\\s+":" "});function encode(cssText){return encoder.exec(cssText)}function decode(cssText){return cssText.replace(ENCODED,function(match,index){return _strings[index-1]})}function encodeString(string){return"\x01"+_strings.push(string.replace(UNICODE,function(match,chr){return eval("'\\u"+"0000".slice(chr.length)+chr+"'")}).slice(1,-1).replace(QUOTES,"\\'"))}function getString(value){return STRING.test(value)?_strings[value.slice(1)-1]:value}var rotater=new RegGrp({Width:"Height",width:"height",Left:"Top",left:"top",Right:"Bottom",right:"bottom",onX:"onY"});function rotate(fn){return rotater.exec(fn)}var eventHandlers=[];function addResize(handler){addRecalc(handler);addEventHandler(window,"onresize",handler)}function addEventHandler(element,type,handler){element.attachEvent(type,handler);eventHandlers.push(arguments)}function removeEventHandler(element,type,handler){try{element.detachEvent(type,handler)}catch(ignore){}}addEventHandler(window,"onunload",function(){var handler;while(handler=eventHandlers.pop()){removeEventHandler(handler[0],handler[1],handler[2])}});function register(handler,element,condition){if(!handler.elements){handler.elements={}}if(condition){handler.elements[element.uniqueID]=element}else{delete handler.elements[element.uniqueID]}return condition}addEventHandler(window,"onbeforeprint",function(){if(!IE7.CSS.print){new StyleSheet("print")}IE7.CSS.print.recalc()});var PIXEL=/^\d+(px)?$/i;var PERCENT=/^\d+%$/;var getPixelValue=function(element,value){if(PIXEL.test(value)){return parseInt(value)}var style=element.style.left;var runtimeStyle=element.runtimeStyle.left;element.runtimeStyle.left=element.currentStyle.left;element.style.left=value||0;value=element.style.pixelLeft;element.style.left=style;element.runtimeStyle.left=runtimeStyle;return value};var $IE7="ie7-";var Fix=Base.extend({constructor:function(){this.fixes=[];this.recalcs=[]},init:Undefined});var recalcs=[];function addRecalc(recalc){recalcs.push(recalc)}IE7.recalc=function(){IE7.HTML.recalc();IE7.CSS.recalc();for(var i=0;i1?2:0;var block=cssParser.exec(selectors[i])||"if(0){";if(_wild){block+=format("if(e%1.nodeName!='!'){",_index)}var store=_duplicate>1?_TEST:"";block+=format(store+_STORE,_index);block+=Array(match(block,/\{/g).length+1).join("}");fn+=block}eval(format(_FN,reg)+cssParser.unescape(fn)+"return s?null:r}");_cache[selector]=_selectorFunction}return _cache[selector](context||document,single)}var _MSIE5=appVersion<6;var _EVALUATED=/^(href|src)$/;var _ATTRIBUTES={"class":"className","for":"htmlFor"};IE7._indexed=1;IE7._byId=function(document,id){var result=document.all[id]||null;if(!result||result.id==id){return result}for(var i=0;i+~,]|[^(]\+|^)([#.:\[])/g,IMPLIED_SPACE=/(^|,)([^\s>+~])/g,WHITESPACE=/\s*([\s>+~(),]|^|$)\s*/g,WILD_CARD=/\s\*\s/g;var CSSParser=RegGrp.extend({constructor:function(items){this.base(items);this.sorter=new RegGrp;this.sorter.add(/:not\([^)]*\)/,RegGrp.IGNORE);this.sorter.add(/([ >](\*|[\w-]+))([^: >+~]*)(:\w+-child(\([^)]+\))?)([^: >+~]*)/,"$1$3$6$4")},ignoreCase:true,escape:function(selector){return this.optimise(this.format(selector))},format:function(selector){return selector.replace(WHITESPACE,"$1").replace(IMPLIED_SPACE,"$1 $2").replace(IMPLIED_ASTERISK,"$1*$2")},optimise:function(selector){return this.sorter.exec(selector.replace(WILD_CARD,">* "))},unescape:function(selector){return decode(selector)}});var _OPERATORS={"":"%1!=null","=":"%1=='%2'","~=":/(^| )%1( |$)/,"|=":/^%1(-|$)/,"^=":/^%1/,"$=":/%1$/,"*=":/%1/};var _PSEUDO_CLASSES={"first-child":"!IE7._getPreviousElementSibling(e%1)",link:"e%1.currentStyle['ie7-link']=='link'",visited:"e%1.currentStyle['ie7-link']=='visited'"};var _VAR="var p%2=0,i%2,e%2,n%2=e%1.";var _ID="e%1.sourceIndex";var _TEST="var g="+_ID+";if(!p[g]){p[g]=1;";var _STORE="r[r.length]=e%1;if(s)return e%1;";var _FN="var _selectorFunction=function(e0,s){IE7._indexed++;var r=[],p={},reg=[%1],d=document;";var reg;var _index;var _wild;var _list;var _duplicate;var _cache={};var cssParser=new CSSParser({" (\\*|[\\w-]+)#([\\w-]+)":function(match,tagName,id){_wild=false;var replacement="var e%2=IE7._byId(d,'%4');if(e%2&&";if(tagName!="*"){replacement+="e%2.nodeName=='%3'&&"}replacement+="(e%1==d||e%1.contains(e%2))){";if(_list){replacement+=format("i%1=n%1.length;",_list)}return format(replacement,_index++,_index,tagName.toUpperCase(),id)}," (\\*|[\\w-]+)":function(match,tagName){_duplicate++;_wild=tagName=="*";var replacement=_VAR;replacement+=(_wild&&_MSIE5)?"all":"getElementsByTagName('%3')";replacement+=";for(i%2=0;(e%2=n%2[i%2]);i%2++){";return format(replacement,_index++,_list=_index,tagName.toUpperCase())},">(\\*|[\\w-]+)":function(match,tagName){var children=_list;_wild=tagName=="*";var replacement=_VAR;replacement+=children?"children":"childNodes";if(!_wild&&children){replacement+=".tags('%3')"}replacement+=";for(i%2=0;(e%2=n%2[i%2]);i%2++){";if(_wild){replacement+="if(e%2.nodeType==1){";_wild=_MSIE5}else{if(!children){replacement+="if(e%2.nodeName=='%3'){"}}return format(replacement,_index++,_list=_index,tagName.toUpperCase())},"\\+(\\*|[\\w-]+)":function(match,tagName){var replacement="";if(_wild){replacement+="if(e%1.nodeName!='!'){"}_wild=false;replacement+="e%1=IE7._getNextElementSibling(e%1);if(e%1";if(tagName!="*"){replacement+="&&e%1.nodeName=='%2'"}replacement+="){";return format(replacement,_index,tagName.toUpperCase())},"~(\\*|[\\w-]+)":function(match,tagName){var replacement="";if(_wild){replacement+="if(e%1.nodeName!='!'){"}_wild=false;_duplicate=2;replacement+="while(e%1=e%1.nextSibling){if(e%1.ie7_adjacent==IE7._indexed)break;if(";if(tagName=="*"){replacement+="e%1.nodeType==1";if(_MSIE5){replacement+="&&e%1.nodeName!='!'"}}else{replacement+="e%1.nodeName=='%2'"}replacement+="){e%1.ie7_adjacent=IE7._indexed;";return format(replacement,_index,tagName.toUpperCase())},"#([\\w-]+)":function(match,id){_wild=false;var replacement="if(e%1.id=='%2'){";if(_list){replacement+=format("i%1=n%1.length;",_list)}return format(replacement,_index,id)},"\\.([\\w-]+)":function(match,className){_wild=false;reg.push(new RegExp("(^|\\s)"+rescape(className)+"(\\s|$)"));return format("if(e%1.className&®[%2].test(e%1.className)){",_index,reg.length-1)},"\\[([\\w-]+)\\s*([^=]?=)?\\s*([^\\]]*)\\]":function(match,attr,operator,value){var alias=_ATTRIBUTES[attr]||attr;if(operator){var getAttribute="e%1.getAttribute('%2',2)";if(!_EVALUATED.test(attr)){getAttribute="e%1.%3||"+getAttribute}attr=format("("+getAttribute+")",_index,attr,alias)}else{attr=format("IE7._getAttribute(e%1,'%2')",_index,attr)}var replacement=_OPERATORS[operator||""]||"0";if(replacement&&replacement.source){reg.push(new RegExp(format(replacement.source,rescape(cssParser.unescape(value)))));replacement="reg[%2].test(%1)";value=reg.length-1}return"if("+format(replacement,attr,value)+"){"},":+([\\w-]+)(\\(([^)]+)\\))?":function(match,pseudoClass,$2,args){pseudoClass=_PSEUDO_CLASSES[pseudoClass];return"if("+(pseudoClass?format(pseudoClass,_index,args||""):"0")+"){"}});var HYPERLINK=/a(#[\w-]+)?(\.[\w-]+)?:(hover|active)/i;var BRACE1=/\s*\{\s*/,BRACE2=/\s*\}\s*/,COMMA=/\s*\,\s*/;var FIRST_LINE_LETTER=/(.*)(:first-(line|letter))/;var styleSheets=document.styleSheets;IE7.CSS=new (Fix.extend({parser:new Parser,screen:"",print:"",styles:[],rules:[],pseudoClasses:appVersion<7?"first\\-child":"",dynamicPseudoClasses:{toString:function(){var strings=[];for(var pseudoClass in this){strings.push(pseudoClass)}return strings.join("|")}},init:function(){var NONE="^\x01$";var CLASS="\\[class=?[^\\]]*\\]";var pseudoClasses=[];if(this.pseudoClasses){pseudoClasses.push(this.pseudoClasses)}var dynamicPseudoClasses=this.dynamicPseudoClasses.toString();if(dynamicPseudoClasses){pseudoClasses.push(dynamicPseudoClasses)}pseudoClasses=pseudoClasses.join("|");var unknown=appVersion<7?["[>+~[(]|([:.])\\w+\\1"]:[CLASS];if(pseudoClasses){unknown.push(":("+pseudoClasses+")")}this.UNKNOWN=new RegExp(unknown.join("|")||NONE,"i");var complex=appVersion<7?["\\[[^\\]]+\\]|[^\\s(\\[]+\\s*[+~]"]:[CLASS];var complexRule=complex.concat();if(pseudoClasses){complexRule.push(":("+pseudoClasses+")")}Rule.COMPLEX=new RegExp(complexRule.join("|")||NONE,"ig");if(this.pseudoClasses){complex.push(":("+this.pseudoClasses+")")}DynamicRule.COMPLEX=new RegExp(complex.join("|")||NONE,"i");DynamicRule.MATCH=new RegExp(dynamicPseudoClasses?"(.*):("+dynamicPseudoClasses+")(.*)":NONE,"i");this.createStyleSheet();this.refresh()},addEventHandler:function(){addEventHandler.apply(null,arguments)},addFix:function(expression,replacement){this.parser.add(expression,replacement)},addRecalc:function(propertyName,test,handler,replacement){test=new RegExp("([{;\\s])"+propertyName+"\\s*:\\s*"+test+"[^;}]*");var id=this.recalcs.length;if(replacement){replacement=propertyName+":"+replacement}this.addFix(test,function(match,$1){return(replacement?$1+replacement:match)+";ie7-"+match.slice(1)+";ie7_recalc"+id+":1"});this.recalcs.push(arguments);return id},apply:function(){this.getInlineStyles();new StyleSheet("screen");this.trash()},createStyleSheet:function(){this.styleSheet=document.createStyleSheet();this.styleSheet.ie7=true;this.styleSheet.owningElement.ie7=true;this.styleSheet.cssText=HEADER},getInlineStyles:function(){var styleSheets=document.getElementsByTagName("style"),styleSheet;for(var i=styleSheets.length-1;(styleSheet=styleSheets[i]);i--){if(!styleSheet.disabled&&!styleSheet.ie7){this.styles.push(styleSheet.innerHTML)}}},getText:function(styleSheet,path){try{var cssText=styleSheet.cssText}catch(e){cssText=""}if(httpRequest){cssText=loadFile(styleSheet.href,path)||cssText}return cssText},recalc:function(){this.screen.recalc();var RECALCS=/ie7_recalc\d+/g;var start=HEADER.match(/[{,]/g).length;var stop=start+(this.screen.cssText.match(/\{/g)||"").length;var rules=this.styleSheet.rules,rule;var calcs,calc,elements,element,i,j,k,id;for(i=start;i0&&Rule.CLASS.test(simple)){simple=simple.replace(Rule.CLASS,"");classes--}while(tags>0&&Rule.TAG.test(simple)){simple=simple.replace(Rule.TAG,"$1*");tags--}simple+="."+this.className;classes=Math.min(classes,2);tags=Math.min(tags,2);var score=-10*classes-tags;if(score>0){simple=simple+","+Rule.MAP[score]+" "+simple}return simple},remove:function(element){element.className=element.className.replace(this.MATCH,"$1")},toString:function(){return format("%1 {%2}",this.selectorText,this.cssText)}},{CHILD:/>/g,CLASS:/\.[\w-]+/,CLASSES:/[.:\[]/g,MULTI:/(\.[\w-]+)+/g,PREFIX:"ie7_class",TAG:/^\w+|([\s>+~])\w+/,TAGS:/^\w|[\s>+~]\w/g,MAP:{1:"html",2:"html body",10:".ie7_html",11:"html.ie7_html",12:"html.ie7_html body",20:".ie7_html .ie7_body",21:"html.ie7_html .ie7_body",22:"html.ie7_html body.ie7_body"}});var DynamicRule=Rule.extend({constructor:function(selector,attach,dynamicPseudoClass,target,cssText){this.attach=attach||"*";this.dynamicPseudoClass=IE7.CSS.dynamicPseudoClasses[dynamicPseudoClass];this.target=target;this.base(selector,cssText)},recalc:function(){var attaches=cssQuery(this.attach),attach;for(var i=0;attach=attaches[i];i++){var target=this.target?cssQuery(this.target,attach):[attach];if(target.length){this.dynamicPseudoClass.apply(attach,target,this)}}}});var DynamicPseudoClass=Base.extend({constructor:function(name,apply){this.name=name;this.apply=apply;this.instances={};IE7.CSS.dynamicPseudoClasses[name]=this},register:function(instance){var _class=instance[2];instance.id=_class.id+instance[0].uniqueID;if(!this.instances[instance.id]){var target=instance[1],j;for(j=0;j*:"+(type=="marginTop"?"first":"last")+"-child",element,true);if(child&&child.currentStyle.styleFloat=="none"&&IE7.hasLayout(child)){collapseMargin(child,type);margin=_getMargin(element,element.currentStyle[type]);childMargin=_getMargin(child,child.currentStyle[type]);if(margin<0||childMargin<0){element.runtimeStyle[type]=margin+childMargin}else{element.runtimeStyle[type]=Math.max(childMargin,margin)}child.runtimeStyle[type]="0px"}}}function _getMargin(element,value){return value=="auto"?0:getPixelValue(element,value)}var UNIT=/^[.\d][\w%]*$/,AUTO=/^(auto|0cm)$/;var applyWidth,applyHeight;IE7.Layout.borderBox=function(element){applyWidth(element);applyHeight(element)};var fixWidth=function(HEIGHT){applyWidth=function(element){if(!PERCENT.test(element.currentStyle.width)){fixWidth(element)}collapseMargins(element)};function fixWidth(element,value){if(!element.runtimeStyle.fixedWidth){if(!value){value=element.currentStyle.width}element.runtimeStyle.fixedWidth=(UNIT.test(value))?Math.max(0,getFixedWidth(element,value)):value;setOverrideStyle(element,"width",element.runtimeStyle.fixedWidth)}}function layoutWidth(element){if(!isFixed(element)){var layoutParent=element.offsetParent;while(layoutParent&&!IE7.hasLayout(layoutParent)){layoutParent=layoutParent.offsetParent}}return(layoutParent||viewport).clientWidth}function getPixelWidth(element,value){if(PERCENT.test(value)){return parseInt(parseFloat(value)/100*layoutWidth(element))}return getPixelValue(element,value)}var getFixedWidth=function(element,value){var borderBox=element.currentStyle["box-sizing"]=="border-box";var adjustment=0;if(quirksMode&&!borderBox){adjustment+=getBorderWidth(element)+getWidth(element,"padding")}else{if(!quirksMode&&borderBox){adjustment-=getBorderWidth(element)+getWidth(element,"padding")}}return getPixelWidth(element,value)+adjustment};function getBorderWidth(element){return element.offsetWidth-element.clientWidth}function getWidth(element,type){return getPixelWidth(element,element.currentStyle[type+"Left"])+getPixelWidth(element,element.currentStyle[type+"Right"])}HEADER+="*{minWidth:none;maxWidth:none;min-width:none;max-width:none}";layout.minWidth=function(element){if(element.currentStyle["min-width"]!=null){element.style.minWidth=element.currentStyle["min-width"]}if(register(arguments.callee,element,element.currentStyle.minWidth!="none")){layout.boxSizing(element);fixWidth(element);resizeWidth(element)}};eval("IE7.Layout.maxWidth="+String(layout.minWidth).replace(/min/g,"max"));function resizeWidth(element){var rect=element.getBoundingClientRect();var width=rect.right-rect.left;if(element.currentStyle.minWidth!="none"&&width<=getFixedWidth(element,element.currentStyle.minWidth)){element.runtimeStyle.width=element.currentStyle.minWidth}else{if(element.currentStyle.maxWidth!="none"&&width>=getFixedWidth(element,element.currentStyle.maxWidth)){element.runtimeStyle.width=element.currentStyle.maxWidth}else{element.runtimeStyle.width=element.runtimeStyle.fixedWidth}}}function fixRight(element){if(register(fixRight,element,/^(fixed|absolute)$/.test(element.currentStyle.position)&&getDefinedStyle(element,"left")!="auto"&&getDefinedStyle(element,"right")!="auto"&&AUTO.test(getDefinedStyle(element,"width")))){resizeRight(element);IE7.Layout.boxSizing(element)}}IE7.Layout.fixRight=fixRight;function resizeRight(element){var left=getPixelWidth(element,element.runtimeStyle._left||element.currentStyle.left);var width=layoutWidth(element)-getPixelWidth(element,element.currentStyle.right)-left-getWidth(element,"margin");if(parseInt(element.runtimeStyle.width)==width){return }element.runtimeStyle.width="";if(isFixed(element)||HEIGHT||element.offsetWidth=5.5&&appVersion<7){IE7.CSS.addFix(/background(-image)?\s*:\s*([^};]*)?url\(([^\)]+)\)([^;}]*)?/,function(match,$1,$2,url,$4){url=getString(url);return PNG.test(url)?"filter:"+format(PNG_FILTER,url,"crop")+";zoom:1;background"+($1||"")+":"+($2||"")+"none"+($4||""):match});IE7.HTML.addRecalc("img,input",function(element){if(element.tagName=="INPUT"&&element.type!="image"){return }fixImage(element);addEventHandler(element,"onpropertychange",function(){if(!printing&&event.propertyName=="src"&&element.src.indexOf(BLANK_GIF)==-1){fixImage(element)}})});var printing=false;addEventHandler(window,"onbeforeprint",function(){printing=true;for(var i=0;i=7){return }IE7.CSS.addRecalc("position","fixed",_positionFixed,"absolute");IE7.CSS.addRecalc("background(-attachment)?","[^};]*fixed",_backgroundFixed);var $viewport=quirksMode?"body":"documentElement";function _fixBackground(){if(body.currentStyle.backgroundAttachment!="fixed"){if(body.currentStyle.backgroundImage=="none"){body.runtimeStyle.backgroundRepeat="no-repeat";body.runtimeStyle.backgroundImage="url("+BLANK_GIF+")"}body.runtimeStyle.backgroundAttachment="fixed"}_fixBackground=Undefined}var _tmp=createTempElement("img");function _isFixed(element){return element?isFixed(element)||_isFixed(element.parentElement):false}function _setExpression(element,propertyName,expression){setTimeout("document.all."+element.uniqueID+".runtimeStyle.setExpression('"+propertyName+"','"+expression+"')",0)}function _backgroundFixed(element){if(register(_backgroundFixed,element,element.currentStyle.backgroundAttachment=="fixed"&&!element.contains(body))){_fixBackground();bgLeft(element);bgTop(element);_backgroundPosition(element)}}function _backgroundPosition(element){_tmp.src=element.currentStyle.backgroundImage.slice(5,-2);var parentElement=element.canHaveChildren?element:element.parentElement;parentElement.appendChild(_tmp);setOffsetLeft(element);setOffsetTop(element);parentElement.removeChild(_tmp)}function bgLeft(element){element.style.backgroundPositionX=element.currentStyle.backgroundPositionX;if(!_isFixed(element)){_setExpression(element,"backgroundPositionX","(parseInt(runtimeStyle.offsetLeft)+document."+$viewport+".scrollLeft)||0")}}eval(rotate(bgLeft));function setOffsetLeft(element){var propertyName=_isFixed(element)?"backgroundPositionX":"offsetLeft";element.runtimeStyle[propertyName]=getOffsetLeft(element,element.style.backgroundPositionX)-element.getBoundingClientRect().left-element.clientLeft+2}eval(rotate(setOffsetLeft));function getOffsetLeft(element,position){switch(position){case"left":case"top":return 0;case"right":case"bottom":return viewport.clientWidth-_tmp.offsetWidth;case"center":return(viewport.clientWidth-_tmp.offsetWidth)/2;default:if(PERCENT.test(position)){return parseInt((viewport.clientWidth-_tmp.offsetWidth)*parseFloat(position)/100)}_tmp.style.left=position;return _tmp.offsetLeft}}eval(rotate(getOffsetLeft));function _positionFixed(element){if(register(_positionFixed,element,isFixed(element))){setOverrideStyle(element,"position","absolute");setOverrideStyle(element,"left",element.currentStyle.left);setOverrideStyle(element,"top",element.currentStyle.top);_fixBackground();IE7.Layout.fixRight(element);_foregroundPosition(element)}}function _foregroundPosition(element,recalc){positionTop(element,recalc);positionLeft(element,recalc,true);if(!element.runtimeStyle.autoLeft&&element.currentStyle.marginLeft=="auto"&&element.currentStyle.right!="auto"){var left=viewport.clientWidth-getPixelWidth(element,element.currentStyle.right)-getPixelWidth(element,element.runtimeStyle._left)-element.clientWidth;if(element.currentStyle.marginRight=="auto"){left=parseInt(left/2)}if(_isFixed(element.offsetParent)){element.runtimeStyle.pixelLeft+=left}else{element.runtimeStyle.shiftLeft=left}}clipWidth(element);clipHeight(element)}function clipWidth(element){var fixWidth=element.runtimeStyle.fixWidth;element.runtimeStyle.borderRightWidth="";element.runtimeStyle.width=fixWidth?getPixelWidth(element,fixWidth):"";if(element.currentStyle.width!="auto"){var rect=element.getBoundingClientRect();var width=element.offsetWidth-viewport.clientWidth+rect.left-2;if(width>=0){element.runtimeStyle.borderRightWidth="0px";width=Math.max(getPixelValue(element,element.currentStyle.width)-width,0);setOverrideStyle(element,"width",width);return width}}}eval(rotate(clipWidth));function positionLeft(element,recalc){if(!recalc&&PERCENT.test(element.currentStyle.width)){element.runtimeStyle.fixWidth=element.currentStyle.width}if(element.runtimeStyle.fixWidth){element.runtimeStyle.width=getPixelWidth(element,element.runtimeStyle.fixWidth)}element.runtimeStyle.shiftLeft=0;element.runtimeStyle._left=element.currentStyle.left;element.runtimeStyle.autoLeft=element.currentStyle.right!="auto"&&element.currentStyle.left=="auto";element.runtimeStyle.left="";element.runtimeStyle.screenLeft=getScreenLeft(element);element.runtimeStyle.pixelLeft=element.runtimeStyle.screenLeft;if(!recalc&&!_isFixed(element.offsetParent)){_setExpression(element,"pixelLeft","runtimeStyle.screenLeft+runtimeStyle.shiftLeft+document."+$viewport+".scrollLeft")}}eval(rotate(positionLeft));function getScreenLeft(element){var screenLeft=element.offsetLeft,nested=1;if(element.runtimeStyle.autoLeft){screenLeft=viewport.clientWidth-element.offsetWidth-getPixelWidth(element,element.currentStyle.right)}if(element.currentStyle.marginLeft!="auto"){screenLeft-=getPixelWidth(element,element.currentStyle.marginLeft)}while(element=element.offsetParent){if(element.currentStyle.position!="static"){nested=-1}screenLeft+=element.offsetLeft*nested}return screenLeft}eval(rotate(getScreenLeft));function getPixelWidth(element,value){return PERCENT.test(value)?parseInt(parseFloat(value)/100*viewport.clientWidth):getPixelValue(element,value)}eval(rotate(getPixelWidth));function _resize(){var elements=_backgroundFixed.elements;for(var i in elements){_backgroundPosition(elements[i])}elements=_positionFixed.elements;for(i in elements){_foregroundPosition(elements[i],true);_foregroundPosition(elements[i],true)}_timer=0}var _timer;addResize(function(){if(!_timer){_timer=setTimeout(_resize,0)}})};var 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StyleSheet("screen");this.trash()},createStyleSheet:function(){this.styleSheet=document.createStyleSheet();this.styleSheet.ie7=true;this.styleSheet.owningElement.ie7=true;this.styleSheet.cssText=HEADER},getInlineStyles:function(){var styleSheets=document.getElementsByTagName("style"),styleSheet;for(var i=styleSheets.length-1;(styleSheet=styleSheets[i]);i--){if(!styleSheet.disabled&&!styleSheet.ie7){this.styles.push(styleSheet.innerHTML)}}},getText:function(styleSheet,path){try{var cssText=styleSheet.cssText}catch(e){cssText=""}if(httpRequest){cssText=loadFile(styleSheet.href,path)||cssText}return cssText},recalc:function(){this.screen.recalc();var RECALCS=/ie7_recalc\d+/g;var start=HEADER.match(/[{,]/g).length;var stop=start+(this.screen.cssText.match(/\{/g)||"").length;var rules=this.styleSheet.rules,rule;var calcs,calc,elements,element,i,j,k,id;for(i=start;i0&&Rule.CLASS.test(simple)){simple=simple.replace(Rule.CLASS,"");classes--}while(tags>0&&Rule.TAG.test(simple)){simple=simple.replace(Rule.TAG,"$1*");tags--}simple+="."+this.className;classes=Math.min(classes,2);tags=Math.min(tags,2);var score=-10*classes-tags;if(score>0){simple=simple+","+Rule.MAP[score]+" "+simple}return simple},remove:function(element){element.className=element.className.replace(this.MATCH,"$1")},toString:function(){return format("%1 {%2}",this.selectorText,this.cssText)}},{CHILD:/>/g,CLASS:/\.[\w-]+/,CLASSES:/[.:\[]/g,MULTI:/(\.[\w-]+)+/g,PREFIX:"ie7_class",TAG:/^\w+|([\s>+~])\w+/,TAGS:/^\w|[\s>+~]\w/g,MAP:{1:"html",2:"html body",10:".ie7_html",11:"html.ie7_html",12:"html.ie7_html body",20:".ie7_html .ie7_body",21:"html.ie7_html .ie7_body",22:"html.ie7_html body.ie7_body"}});var DynamicRule=Rule.extend({constructor:function(selector,attach,dynamicPseudoClass,target,cssText){this.attach=attach||"*";this.dynamicPseudoClass=IE7.CSS.dynamicPseudoClasses[dynamicPseudoClass];this.target=target;this.base(selector,cssText)},recalc:function(){var attaches=cssQuery(this.attach),attach;for(var i=0;attach=attaches[i];i++){var target=this.target?cssQuery(this.target,attach):[attach];if(target.length){this.dynamicPseudoClass.apply(attach,target,this)}}}});var DynamicPseudoClass=Base.extend({constructor:function(name,apply){this.name=name;this.apply=apply;this.instances={};IE7.CSS.dynamicPseudoClasses[name]=this},register:function(instance){var _class=instance[2];instance.id=_class.id+instance[0].uniqueID;if(!this.instances[instance.id]){var target=instance[1],j;for(j=0;j*:"+(type=="marginTop"?"first":"last")+"-child",element,true);if(child&&child.currentStyle.styleFloat=="none"&&IE7.hasLayout(child)){collapseMargin(child,type);margin=_getMargin(element,element.currentStyle[type]);childMargin=_getMargin(child,child.currentStyle[type]);if(margin<0||childMargin<0){element.runtimeStyle[type]=margin+childMargin}else{element.runtimeStyle[type]=Math.max(childMargin,margin)}child.runtimeStyle[type]="0px"}}}function _getMargin(element,value){return value=="auto"?0:getPixelValue(element,value)}var UNIT=/^[.\d][\w%]*$/,AUTO=/^(auto|0cm)$/;var applyWidth,applyHeight;IE7.Layout.borderBox=function(element){applyWidth(element);applyHeight(element)};var fixWidth=function(HEIGHT){applyWidth=function(element){if(!PERCENT.test(element.currentStyle.width)){fixWidth(element)}collapseMargins(element)};function fixWidth(element,value){if(!element.runtimeStyle.fixedWidth){if(!value){value=element.currentStyle.width}element.runtimeStyle.fixedWidth=(UNIT.test(value))?Math.max(0,getFixedWidth(element,value)):value;setOverrideStyle(element,"width",element.runtimeStyle.fixedWidth)}}function layoutWidth(element){if(!isFixed(element)){var layoutParent=element.offsetParent;while(layoutParent&&!IE7.hasLayout(layoutParent)){layoutParent=layoutParent.offsetParent}}return(layoutParent||viewport).clientWidth}function getPixelWidth(element,value){if(PERCENT.test(value)){return parseInt(parseFloat(value)/100*layoutWidth(element))}return getPixelValue(element,value)}var getFixedWidth=function(element,value){var borderBox=element.currentStyle["box-sizing"]=="border-box";var adjustment=0;if(quirksMode&&!borderBox){adjustment+=getBorderWidth(element)+getWidth(element,"padding")}else{if(!quirksMode&&borderBox){adjustment-=getBorderWidth(element)+getWidth(element,"padding")}}return getPixelWidth(element,value)+adjustment};function getBorderWidth(element){return element.offsetWidth-element.clientWidth}function getWidth(element,type){return getPixelWidth(element,element.currentStyle[type+"Left"])+getPixelWidth(element,element.currentStyle[type+"Right"])}HEADER+="*{minWidth:none;maxWidth:none;min-width:none;max-width:none}";layout.minWidth=function(element){if(element.currentStyle["min-width"]!=null){element.style.minWidth=element.currentStyle["min-width"]}if(register(arguments.callee,element,element.currentStyle.minWidth!="none")){layout.boxSizing(element);fixWidth(element);resizeWidth(element)}};eval("IE7.Layout.maxWidth="+String(layout.minWidth).replace(/min/g,"max"));function resizeWidth(element){var rect=element.getBoundingClientRect();var width=rect.right-rect.left;if(element.currentStyle.minWidth!="none"&&width<=getFixedWidth(element,element.currentStyle.minWidth)){element.runtimeStyle.width=element.currentStyle.minWidth}else{if(element.currentStyle.maxWidth!="none"&&width>=getFixedWidth(element,element.currentStyle.maxWidth)){element.runtimeStyle.width=element.currentStyle.maxWidth}else{element.runtimeStyle.width=element.runtimeStyle.fixedWidth}}}function fixRight(element){if(register(fixRight,element,/^(fixed|absolute)$/.test(element.currentStyle.position)&&getDefinedStyle(element,"left")!="auto"&&getDefinedStyle(element,"right")!="auto"&&AUTO.test(getDefinedStyle(element,"width")))){resizeRight(element);IE7.Layout.boxSizing(element)}}IE7.Layout.fixRight=fixRight;function resizeRight(element){var left=getPixelWidth(element,element.runtimeStyle._left||element.currentStyle.left);var width=layoutWidth(element)-getPixelWidth(element,element.currentStyle.right)-left-getWidth(element,"margin");if(parseInt(element.runtimeStyle.width)==width){return }element.runtimeStyle.width="";if(isFixed(element)||HEIGHT||element.offsetWidth=5.5&&appVersion<7){IE7.CSS.addFix(/background(-image)?\s*:\s*([^};]*)?url\(([^\)]+)\)([^;}]*)?/,function(match,$1,$2,url,$4){url=getString(url);return PNG.test(url)?"filter:"+format(PNG_FILTER,url,"crop")+";zoom:1;background"+($1||"")+":"+($2||"")+"none"+($4||""):match});IE7.HTML.addRecalc("img,input",function(element){if(element.tagName=="INPUT"&&element.type!="image"){return }fixImage(element);addEventHandler(element,"onpropertychange",function(){if(!printing&&event.propertyName=="src"&&element.src.indexOf(BLANK_GIF)==-1){fixImage(element)}})});var printing=false;addEventHandler(window,"onbeforeprint",function(){printing=true;for(var i=0;i=7){return }IE7.CSS.addRecalc("position","fixed",_positionFixed,"absolute");IE7.CSS.addRecalc("background(-attachment)?","[^};]*fixed",_backgroundFixed);var $viewport=quirksMode?"body":"documentElement";function _fixBackground(){if(body.currentStyle.backgroundAttachment!="fixed"){if(body.currentStyle.backgroundImage=="none"){body.runtimeStyle.backgroundRepeat="no-repeat";body.runtimeStyle.backgroundImage="url("+BLANK_GIF+")"}body.runtimeStyle.backgroundAttachment="fixed"}_fixBackground=Undefined}var _tmp=createTempElement("img");function _isFixed(element){return element?isFixed(element)||_isFixed(element.parentElement):false}function _setExpression(element,propertyName,expression){setTimeout("document.all."+element.uniqueID+".runtimeStyle.setExpression('"+propertyName+"','"+expression+"')",0)}function _backgroundFixed(element){if(register(_backgroundFixed,element,element.currentStyle.backgroundAttachment=="fixed"&&!element.contains(body))){_fixBackground();bgLeft(element);bgTop(element);_backgroundPosition(element)}}function _backgroundPosition(element){_tmp.src=element.currentStyle.backgroundImage.slice(5,-2);var parentElement=element.canHaveChildren?element:element.parentElement;parentElement.appendChild(_tmp);setOffsetLeft(element);setOffsetTop(element);parentElement.removeChild(_tmp)}function bgLeft(element){element.style.backgroundPositionX=element.currentStyle.backgroundPositionX;if(!_isFixed(element)){_setExpression(element,"backgroundPositionX","(parseInt(runtimeStyle.offsetLeft)+document."+$viewport+".scrollLeft)||0")}}eval(rotate(bgLeft));function setOffsetLeft(element){var propertyName=_isFixed(element)?"backgroundPositionX":"offsetLeft";element.runtimeStyle[propertyName]=getOffsetLeft(element,element.style.backgroundPositionX)-element.getBoundingClientRect().left-element.clientLeft+2}eval(rotate(setOffsetLeft));function getOffsetLeft(element,position){switch(position){case"left":case"top":return 0;case"right":case"bottom":return viewport.clientWidth-_tmp.offsetWidth;case"center":return(viewport.clientWidth-_tmp.offsetWidth)/2;default:if(PERCENT.test(position)){return parseInt((viewport.clientWidth-_tmp.offsetWidth)*parseFloat(position)/100)}_tmp.style.left=position;return _tmp.offsetLeft}}eval(rotate(getOffsetLeft));function _positionFixed(element){if(register(_positionFixed,element,isFixed(element))){setOverrideStyle(element,"position","absolute");setOverrideStyle(element,"left",element.currentStyle.left);setOverrideStyle(element,"top",element.currentStyle.top);_fixBackground();IE7.Layout.fixRight(element);_foregroundPosition(element)}}function _foregroundPosition(element,recalc){positionTop(element,recalc);positionLeft(element,recalc,true);if(!element.runtimeStyle.autoLeft&&element.currentStyle.marginLeft=="auto"&&element.currentStyle.right!="auto"){var left=viewport.clientWidth-getPixelWidth(element,element.currentStyle.right)-getPixelWidth(element,element.runtimeStyle._left)-element.clientWidth;if(element.currentStyle.marginRight=="auto"){left=parseInt(left/2)}if(_isFixed(element.offsetParent)){element.runtimeStyle.pixelLeft+=left}else{element.runtimeStyle.shiftLeft=left}}clipWidth(element);clipHeight(element)}function clipWidth(element){var fixWidth=element.runtimeStyle.fixWidth;element.runtimeStyle.borderRightWidth="";element.runtimeStyle.width=fixWidth?getPixelWidth(element,fixWidth):"";if(element.currentStyle.width!="auto"){var rect=element.getBoundingClientRect();var width=element.offsetWidth-viewport.clientWidth+rect.left-2;if(width>=0){element.runtimeStyle.borderRightWidth="0px";width=Math.max(getPixelValue(element,element.currentStyle.width)-width,0);setOverrideStyle(element,"width",width);return width}}}eval(rotate(clipWidth));function positionLeft(element,recalc){if(!recalc&&PERCENT.test(element.currentStyle.width)){element.runtimeStyle.fixWidth=element.currentStyle.width}if(element.runtimeStyle.fixWidth){element.runtimeStyle.width=getPixelWidth(element,element.runtimeStyle.fixWidth)}element.runtimeStyle.shiftLeft=0;element.runtimeStyle._left=element.currentStyle.left;element.runtimeStyle.autoLeft=element.currentStyle.right!="auto"&&element.currentStyle.left=="auto";element.runtimeStyle.left="";element.runtimeStyle.screenLeft=getScreenLeft(element);element.runtimeStyle.pixelLeft=element.runtimeStyle.screenLeft;if(!recalc&&!_isFixed(element.offsetParent)){_setExpression(element,"pixelLeft","runtimeStyle.screenLeft+runtimeStyle.shiftLeft+document."+$viewport+".scrollLeft")}}eval(rotate(positionLeft));function getScreenLeft(element){var screenLeft=element.offsetLeft,nested=1;if(element.runtimeStyle.autoLeft){screenLeft=viewport.clientWidth-element.offsetWidth-getPixelWidth(element,element.currentStyle.right)}if(element.currentStyle.marginLeft!="auto"){screenLeft-=getPixelWidth(element,element.currentStyle.marginLeft)}while(element=element.offsetParent){if(element.currentStyle.position!="static"){nested=-1}screenLeft+=element.offsetLeft*nested}return screenLeft}eval(rotate(getScreenLeft));function getPixelWidth(element,value){return PERCENT.test(value)?parseInt(parseFloat(value)/100*viewport.clientWidth):getPixelValue(element,value)}eval(rotate(getPixelWidth));function _resize(){var elements=_backgroundFixed.elements;for(var i in elements){_backgroundPosition(elements[i])}elements=_positionFixed.elements;for(i in elements){_foregroundPosition(elements[i],true);_foregroundPosition(elements[i],true)}_timer=0}var _timer;addResize(function(){if(!_timer){_timer=setTimeout(_resize,0)}})};var WRAPPER_STYLE={backgroundColor:"transparent",backgroundImage:"none",backgroundPositionX:null,backgroundPositionY:null,backgroundRepeat:null,borderTopWidth:0,borderRightWidth:0,borderBottomWidth:0,borderLeftStyle:"none",borderTopStyle:"none",borderRightStyle:"none",borderBottomStyle:"none",borderLeftWidth:0,height:null,marginTop:0,marginBottom:0,marginRight:0,marginLeft:0,width:"100%"};IE7.CSS.addRecalc("overflow","visible",function(element){if(element.parentNode.ie7_wrapped){return }if(IE7.Layout&&element.currentStyle["max-height"]!="auto"){IE7.Layout.maxHeight(element)}if(element.currentStyle.marginLeft=="auto"){element.style.marginLeft=0}if(element.currentStyle.marginRight=="auto"){element.style.marginRight=0}var wrapper=document.createElement(ANON);wrapper.ie7_wrapped=element;for(var propertyName in WRAPPER_STYLE){wrapper.style[propertyName]=element.currentStyle[propertyName];if(WRAPPER_STYLE[propertyName]!=null){element.runtimeStyle[propertyName]=WRAPPER_STYLE[propertyName]}}wrapper.style.display="block";wrapper.style.position="relative";element.runtimeStyle.position="absolute";element.parentNode.insertBefore(wrapper,element);wrapper.appendChild(element)});function ie7Quirks(){var FONT_SIZES="xx-small,x-small,small,medium,large,x-large,xx-large".split(",");for(var i=0;i=%2",a,b,position,last,"&&","%","==");if(negate){query="!("+query+")"}return query}_PSEUDO_CLASSES={link:"e%1.currentStyle['ie7-link']=='link'",visited:"e%1.currentStyle['ie7-link']=='visited'",checked:"e%1.checked",contains:"e%1.innerText.indexOf('%2')!=-1",disabled:"e%1.isDisabled",empty:"IE7._isEmpty(e%1)",enabled:"e%1.disabled===false","first-child":"!IE7._getPreviousElementSibling(e%1)",lang:"IE7._isLang(e%1,'%2')","last-child":"!IE7._getNextElementSibling(e%1)","only-child":"!IE7._getPreviousElementSibling(e%1)&&!IE7._getNextElementSibling(e%1)",target:"e%1.id==location.hash.slice(1)",indeterminate:"e%1.indeterminate"};IE7._register=function(element){if(element.rows){element.ie7_length=element.rows.length;element.ie7_lookup="rowIndex"}else{if(element.cells){element.ie7_length=element.cells.length;element.ie7_lookup="cellIndex"}else{if(element.ie7_indexed!=IE7._indexed){var index=0;var child=element.firstChild;while(child){if(child.nodeType==1&&child.nodeName!="!"){child.ie7_index=++index}child=child.nextSibling}element.ie7_length=index;element.ie7_lookup="ie7_index"}}}element.ie7_indexed=IE7._indexed;return element};var keys=cssParser[_KEYS];var pseudoClass=keys[keys.length-1];keys.length--;cssParser.merge({":not\\((\\*|[\\w-]+)?([^)]*)\\)":function(match,tagName,filters){var replacement=(tagName&&tagName!="*")?format("if(e%1.nodeName=='%2'){",_index,tagName.toUpperCase()):"";replacement+=cssParser.exec(filters);return"if(!"+replacement.slice(2,-1).replace(/\)\{if\(/g,"&&")+"){"},":nth(-last)?-child\\(([^)]+)\\)":function(match,last,args){_wild=false;last=format("e%1.parentNode.ie7_length",_index);var replacement="if(p%1!==e%1.parentNode)p%1=IE7._register(e%1.parentNode);";replacement+="var i=e%1[p%1.ie7_lookup];if(p%1.ie7_lookup!='ie7_index')i++;if(";return format(replacement,_index)+_nthChild(match,args,"i",last)+"){"}});keys.push(pseudoClass);var BRACKETS="\\([^)]*\\)";if(IE7.CSS.pseudoClasses){IE7.CSS.pseudoClasses+="|"}IE7.CSS.pseudoClasses+="before|after|last\\-child|only\\-child|empty|root|"+"not|nth\\-child|nth\\-last\\-child|contains|lang".split("|").join(BRACKETS+"|")+BRACKETS;encoder.add(/::/,":");var Focus=new DynamicPseudoClass("focus",function(element){var instance=arguments;IE7.CSS.addEventHandler(element,"onfocus",function(){Focus.unregister(instance);Focus.register(instance)});IE7.CSS.addEventHandler(element,"onblur",function(){Focus.unregister(instance)});if(element==document.activeElement){Focus.register(instance)}});var Active=new DynamicPseudoClass("active",function(element){var instance=arguments;IE7.CSS.addEventHandler(element,"onmousedown",function(){Active.register(instance)})});addEventHandler(document,"onmouseup",function(){var instances=Active.instances;for(var i in instances){Active.unregister(instances[i])}});var Checked=new DynamicPseudoClass("checked",function(element){if(typeof element.checked!="boolean"){return }var instance=arguments;IE7.CSS.addEventHandler(element,"onpropertychange",function(){if(event.propertyName=="checked"){if(element.checked){Checked.register(instance)}else{Checked.unregister(instance)}}});if(element.checked){Checked.register(instance)}});var Enabled=new DynamicPseudoClass("enabled",function(element){if(typeof element.disabled!="boolean"){return }var instance=arguments;IE7.CSS.addEventHandler(element,"onpropertychange",function(){if(event.propertyName=="disabled"){if(!element.isDisabled){Enabled.register(instance)}else{Enabled.unregister(instance)}}});if(!element.isDisabled){Enabled.register(instance)}});var Disabled=new DynamicPseudoClass("disabled",function(element){if(typeof element.disabled!="boolean"){return }var instance=arguments;IE7.CSS.addEventHandler(element,"onpropertychange",function(){if(event.propertyName=="disabled"){if(element.isDisabled){Disabled.register(instance)}else{Disabled.unregister(instance)}}});if(element.isDisabled){Disabled.register(instance)}});var Indeterminate=new DynamicPseudoClass("indeterminate",function(element){if(typeof element.indeterminate!="boolean"){return }var instance=arguments;IE7.CSS.addEventHandler(element,"onpropertychange",function(){if(event.propertyName=="indeterminate"){if(element.indeterminate){Indeterminate.register(instance)}else{Indeterminate.unregister(instance)}}});IE7.CSS.addEventHandler(element,"onclick",function(){Indeterminate.unregister(instance)})});var Target=new DynamicPseudoClass("target",function(element){var instance=arguments;if(!element.tabIndex){element.tabIndex=0}IE7.CSS.addEventHandler(document,"onpropertychange",function(){if(event.propertyName=="activeElement"){if(element.id&&element.id==location.hash.slice(1)){Target.register(instance)}else{Target.unregister(instance)}}});if(element.id&&element.id==location.hash.slice(1)){Target.register(instance)}});var ATTR=/^attr/;var URL=/^url\s*\(\s*([^)]*)\)$/;var POSITION_MAP={before0:"beforeBegin",before1:"afterBegin",after0:"afterEnd",after1:"beforeEnd"};var PseudoElement=IE7.PseudoElement=Rule.extend({constructor:function(selector,position,cssText){this.position=position;var content=cssText.match(PseudoElement.CONTENT),match,entity;if(content){content=content[1];match=content.split(/\s+/);for(var i=0;(entity=match[i]);i++){match[i]=ATTR.test(entity)?{attr:entity.slice(5,-1)}:(entity.charAt(0)=="'")?getString(entity):decode(entity)}content=match}this.content=content;this.base(selector,decode(cssText))},init:function(){this.match=cssQuery(this.selector);for(var i=0;i%4",MATCH:/(.*):(before|after).*/,count:0});var UNSUCCESSFUL=/^(submit|reset|button)$/;IE7.HTML.addRecalc("button,input",function(button){if(button.tagName=="BUTTON"){var match=button.outerHTML.match(/ value="([^"]*)"/i);button.runtimeStyle.value=(match)?match[1]:""}if(button.type=="submit"){addEventHandler(button,"onclick",function(){button.runtimeStyle.clicked=true;setTimeout("document.all."+button.uniqueID+".runtimeStyle.clicked=false",1)})}});IE7.HTML.addRecalc("form",function(form){addEventHandler(form,"onsubmit",function(){for(var element,i=0;element=form[i];i++){if(UNSUCCESSFUL.test(element.type)&&!element.disabled&&!element.runtimeStyle.clicked){element.disabled=true;setTimeout("document.all."+element.uniqueID+".disabled=false",1)}else{if(element.tagName=="BUTTON"&&element.type=="submit"){setTimeout("document.all."+element.uniqueID+".value='"+element.value+"'",1);element.value=element.runtimeStyle.value}}}})});IE7.HTML.addRecalc("img",function(img){if(img.alt&&!img.title){img.title=""}});IE7.CSS.addRecalc("border-spacing",NUMERIC,function(element){if(element.currentStyle.borderCollapse!="collapse"){element.cellSpacing=getPixelValue(element,element.currentStyle["border-spacing"])}});IE7.CSS.addRecalc("box-sizing","content-box",IE7.Layout.boxSizing);IE7.CSS.addRecalc("box-sizing","border-box",IE7.Layout.borderBox);IE7.CSS.addFix(/opacity\s*:\s*([\d.]+)/,function(match,value){return"zoom:1;filter:Alpha(opacity="+((value*100)||1)+")"});var IMAGE=/^image/i;IE7.HTML.addRecalc("object",function(element){if(IMAGE.test(element.type)){element.body.style.cssText="margin:0;padding:0;border:none;overflow:hidden";return element}});IE7.loaded=true;(function(){try{documentElement.doScroll("left")}catch(e){setTimeout(arguments.callee,1);return }try{eval(script.innerHTML)}catch(e){}PNG=new RegExp(rescape(typeof IE7_PNG_SUFFIX=="string"?IE7_PNG_SUFFIX:"-trans.png")+"$","i");body=document.body;viewport=quirksMode?body:documentElement;body.className+=" ie7_body";documentElement.className+=" ie7_html";if(quirksMode){ie7Quirks()}IE7.CSS.init();IE7.HTML.init();IE7.HTML.apply();IE7.CSS.apply();IE7.recalc()})()})(); \ No newline at end of file diff --git a/static/scripts/packed/cookie_set.js b/static/scripts/packed/cookie_set.js index 3ec86bb5530..4a7f3223cc8 100644 --- a/static/scripts/packed/cookie_set.js +++ b/static/scripts/packed/cookie_set.js @@ -1 +1 @@ -function CookieSet(A){this.cookie_name=A;this.store=store={};q.each((q.cookie(A)||"").split("|"),function(C,B){store[B]=true})}CookieSet.prototype.add=function(A){this.store[A]=true;return this};CookieSet.prototype.remove=function(A){delete this.store[A];return this};CookieSet.prototype.removeAll=function(A){this.store={};return this};CookieSet.prototype.contains=function(A){return(A in this.store)};CookieSet.prototype.save=function(){t=[];for(key in this.store){if(key!=""){t.push(key)}}q.cookie(this.cookie_name,t.join("|"));return this} \ No newline at end of file +function CookieSet(A){this.cookie_name=A;this.store=store={};q.each((q.cookie(A)||"").split("|"),function(C,B){store[B]=true})}CookieSet.prototype.add=function(A){this.store[A]=true;return this};CookieSet.prototype.remove=function(A){delete this.store[A];return this};CookieSet.prototype.removeAll=function(A){this.store={};return this};CookieSet.prototype.contains=function(A){return(A in this.store)};CookieSet.prototype.save=function(){t=[];for(key in this.store){if(key!=""){t.push(key)}}q.cookie(this.cookie_name,t.join("|"));return this}; \ No newline at end of file diff --git a/static/scripts/packed/galaxy.base.js b/static/scripts/packed/galaxy.base.js index 9be32a469c7..2f9006aade5 100644 --- a/static/scripts/packed/galaxy.base.js +++ b/static/scripts/packed/galaxy.base.js @@ -1 +1 @@ -jQuery(document).ready(function(){jQuery("a[@confirm]").click(function(){return confirm(jQuery(this).attr("confirm"))})}) \ No newline at end of file +jQuery(document).ready(function(){jQuery("a[@confirm]").click(function(){return confirm(jQuery(this).attr("confirm"))});jQuery("div[@popupmenu]").each(function(){var B={};$(this).find("a").each(function(){var C=$(this).attr("confirm"),D=$(this).attr("href"),E=$(this).attr("target");B[$(this).text()]=function(){if(!C||confirm(C)){var F=window;if(E=="_parent"){F=window.parent}F.location=D}}});var A=$("#"+$(this).attr("popupmenu"));make_popupmenu(A,B);$(this).remove();A.show()})});function ensure_popup_helper(){if($("#popup-helper").length==0){var A=$("");if($.browser.ie){A.css("opacity","0.01")}A.appendTo("body").hide()}}function make_popupmenu(D,B){ensure_popup_helper();var A=$("
").appendTo("body");$.each(B,function(G,F){$("
").html(G).click(F).appendTo(A)});var C=function(){$(A).unbind().hide();$("#popup-helper").unbind().hide()};var E=function(F){var G=$(D).offset();$("#popup-helper").mousedown(C).show();$(A).click(C).css({top:-1000}).show().css({top:F.pageY-2,left:F.pageX-2});return false};$(D).click(E)}; \ No newline at end of file diff --git a/static/scripts/packed/galaxy.panels.js b/static/scripts/packed/galaxy.panels.js index d670d72d8f7..00d872f6026 100644 --- a/static/scripts/packed/galaxy.panels.js +++ b/static/scripts/packed/galaxy.panels.js @@ -1 +1 @@ -var hidden_width=7;var border_tweak=9;var jq=jQuery;function ensure_dd_helper(){if(jq("#DD-helper").length==0){var A=jq("
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").appendTo("body");$.each(B,function(G,F){$("
").html(G).click(F).appendTo(A)});var C=function(){$(A).unbind().hide();$("#popup-helper").unbind().hide()};var E=function(){var F=$(D).offset();$("#popup-helper").mousedown(C).show();$(A).click(C).css({top:-1000}).show().css({top:F.top+$(D).height()+9,left:F.left+$(D).width()-$(A).width()})};$(D).click(E)}; \ No newline at end of file diff --git a/static/scripts/packed/galaxy.ui.scrollPanel.js b/static/scripts/packed/galaxy.ui.scrollPanel.js index d155e3dab43..b16bbeeca48 100644 --- a/static/scripts/packed/galaxy.ui.scrollPanel.js +++ b/static/scripts/packed/galaxy.ui.scrollPanel.js @@ -1 +1 @@ -$.ui.plugin.add("draggable","scrollPanel",{drag:function(G,H){var J=$(this).data("draggable");clearTimeout(J.timeout);var B=H.options,D=J.element,A=B.panel,C=A.position(),I=A.width(),E=A.height();viewport=A.parent();viewport_w=viewport.width(),viewport_h=viewport.height(),element_w=D.width(),element_h=D.height(),moved=false,close=5,nudge=23,p_min_x=-(I-viewport_w),p_min_y=-(E-viewport_h),p_max_x=0,p_max_y=0,min_vis_x=-C.left,max_vis_x=min_vis_x+viewport_w,min_vis_y=-C.top,max_vis_y=min_vis_y+viewport_h,mouse_x=H.position.left+J.offset.click.left;mouse_y=H.position.top+J.offset.click.top;if((C.leftp_min_x)&&(mouse_x+close>max_vis_x)){var K=Math.min(nudge,C.left-p_min_x);A.css("left",C.left-K);moved=true;J.offset.parent.left-=K;H.position.left+=K}if((!moved)&&(C.topp_min_y)&&(mouse_y+close>max_vis_y)){var K=Math.min(nudge,C.top-p_min_x);A.css("top",(C.top-K)+"px");var F=C.top-A.position().top;J.offset.parent.top-=F;H.position.top+=F;moved=true}if(moved){$.ui.ddmanager.prepareOffsets(J,G)}H.position.left=Math.max(H.position.left,0);H.position.top=Math.max(H.position.top,0);H.position.left=Math.min(H.position.left,I-element_w);H.position.top=Math.min(H.position.top,E-element_h);if(moved){J.old_e=G;J.timeout=setTimeout(function(){J.mouseMove(G)},50)}}}); \ No newline at end of file +$.ui.plugin.add("draggable","scrollPanel",{drag:function(G,H){var J=$(this).data("draggable");clearTimeout(J.timeout);var B=H.options,D=J.element,A=B.panel,C=A.position(),I=A.width(),E=A.height();viewport=A.parent();viewport_w=viewport.width(),viewport_h=viewport.height(),element_w=D.width(),element_h=D.height(),moved=false,close=5,nudge=23,p_min_x=-(I-viewport_w),p_min_y=-(E-viewport_h),p_max_x=0,p_max_y=0,min_vis_x=-C.left,max_vis_x=min_vis_x+viewport_w,min_vis_y=-C.top,max_vis_y=min_vis_y+viewport_h,mouse_x=H.position.left+J.offset.click.left;mouse_y=H.position.top+J.offset.click.top;if((C.leftp_min_x)&&(mouse_x+close>max_vis_x)){var K=Math.min(nudge,C.left-p_min_x);A.css("left",C.left-K);moved=true;J.offset.parent.left-=K;H.position.left+=K}if((!moved)&&(C.topp_min_y)&&(mouse_y+close>max_vis_y)){var K=Math.min(nudge,C.top-p_min_x);A.css("top",(C.top-K)+"px");var F=C.top-A.position().top;J.offset.parent.top-=F;H.position.top+=F;moved=true}H.position.left=Math.max(H.position.left,0);H.position.top=Math.max(H.position.top,0);H.position.left=Math.min(H.position.left,I-element_w);H.position.top=Math.min(H.position.top,E-element_h);if(moved){$.ui.ddmanager.prepareOffsets(J,G)}if(moved){J.old_e=G;J.timeout=setTimeout(function(){J.mouseMove(G)},50)}},stop:function(C,B){var A=$(this).data("draggable");clearTimeout(A.timeout)}}); \ No newline at end of file diff --git a/static/scripts/packed/galaxy.workflow_editor.canvas.js b/static/scripts/packed/galaxy.workflow_editor.canvas.js index 14c463b0e02..324c99cb596 100644 --- a/static/scripts/packed/galaxy.workflow_editor.canvas.js +++ b/static/scripts/packed/galaxy.workflow_editor.canvas.js @@ -1 +1 @@ -function Terminal(A){this.element=A;this.connectors=[]}Terminal.prototype={connect:function(A){this.connectors.push(A);if(this.node){this.node.changed()}},disconnect:function(A){this.connectors.splice($.inArray(A,this.connectors),1);if(this.node){this.node.changed()}},redraw:function(){$.each(this.connectors,function(A,B){B.redraw()})},destroy:function(){$.each(this.connectors.slice(),function(A,B){B.destroy()})}};function OutputTerminal(A,B){Terminal.call(this,A);this.datatype=B}OutputTerminal.prototype.__proto__=Terminal.prototype;function InputTerminal(A,B){Terminal.call(this,A);this.datatypes=B}InputTerminal.prototype={__proto__:Terminal.prototype,can_accept:function(A){if(this.connectors.length<1){for(t in this.datatypes){if(A.datatype=="input"){return true}if(issubtype(A.datatype,this.datatypes[t])){return true}}}return false}};function Connector(B,A){this.canvas=null;this.dragging=false;this.inner_color="#FFFFFF";this.outer_color="#D8B365"}$.extend(Connector.prototype,{connect:function(B,A){this.handle1=B;this.handle1.connect(this);this.handle2=A;this.handle2.connect(this)},destroy:function(){if(this.handle1){this.handle1.disconnect(this)}if(this.handle2){this.handle2.disconnect(this)}$(this.canvas).remove()},redraw:function(){var C=$("#canvas-container");if(!this.canvas){this.canvas=document.createElement("canvas");C.append($(this.canvas));if(this.dragging){this.canvas.style.zIndex="300"}}var L=function(S){return $(S).offset().left-C.offset().left};var G=function(S){return $(S).offset().top-C.offset().top};var F=L(this.handle1.element)+5;var E=G(this.handle1.element)+5;var N=L(this.handle2.element)+5;var K=G(this.handle2.element)+5;var D=100;var I=Math.min(F,N);var A=Math.max(F,N);var H=Math.min(E,K);var R=Math.max(E,K);var B=Math.min(Math.max(Math.abs(R-H)/2,100),300);var M=I-D;var Q=H-D;var O=A-I+2*D;var J=R-H+2*D;this.canvas.style.left=M+"px";this.canvas.style.top=Q+"px";this.canvas.setAttribute("width",O);this.canvas.setAttribute("height",J);F-=M;E-=Q;N-=M;K-=Q;var P=this.canvas.getContext("2d");P.lineCap="round";P.strokeStyle=this.outer_color;P.lineWidth=7;P.beginPath();P.moveTo(F,E);P.bezierCurveTo(F+B,E,N-B,K,N,K);P.stroke();P.strokeStyle=this.inner_color;P.lineWidth=5;P.beginPath();P.moveTo(F,E);P.bezierCurveTo(F+B,E,N-B,K,N,K);P.stroke()}});function Node(A){this.element=A;this.input_terminals={};this.output_terminals={};this.tool_errors={}}$.extend(Node.prototype,{enable_input_terminal:function(C,A,B){node=this;$(C).each(function(){var D=this.terminal=new InputTerminal(this,B);D.node=node;D.name=A;$(this).droppable({tolerance:"intersect",accept:function(E){E=E.get(0);return(E.terminal)&&(D.can_accept(E.terminal))},activeClass:"input-terminal-active",over:function(F,E){E.helper.get(0).terminal.connectors[0].inner_color="#BBFFBB"},out:function(F,E){E.helper.get(0).terminal.connectors[0].inner_color="#FFFFFF"},drop:function(I,G){var E=$(this).data("droppable");var F=G.draggable.get(0).terminal;var H=E.element.get(0).terminal;var J=new Connector();J.connect(F,H);J.redraw()}});$(this).hoverIntent(function(){if(D.connectors.length>0){var E=$("
").css({display:"none"}).appendTo("body").append($("
").append($("").click(function(){$.each(D.connectors,function(G,F){F.destroy()});E.remove()}))).bind("mouseleave",function(){$(this).fadeOut("fast",function(){$(this).remove()})});E.css({top:$(this).offset().top-2,left:$(this).offset().left-E.width(),"padding-right":$(this).width()}).fadeIn("fast")}},function(){});node.input_terminals[A]=D})},enable_output_terminal:function(C,A,B){node=this;$(C).each(function(){var D=this.terminal=new OutputTerminal(this,B);D.node=node;D.name=A;$(this).draggable({scrollPanel:true,panel:$("#canvas-container"),helper:function(){var E=$('
').appendTo("#canvas-container").get(0);E.terminal=new OutputTerminal(E);var F=new Connector();this.drag_temp_connector=F;F.dragging=true;F.connect(this.terminal,E.terminal);return E},drag:function(F,E){h=E.helper.get(0);h.terminal.redraw()},stop:function(F,E){this.drag_temp_connector.destroy()}});node.output_terminals[A]=D})},redraw:function(){$.each(this.input_terminals,function(A,B){B.redraw()});$.each(this.output_terminals,function(A,B){B.redraw()})},destroy:function(){$.each(this.input_terminals,function(A,B){B.destroy();$(B.element).droppable("destroy")});$.each(this.output_terminals,function(A,B){B.destroy();$(B.element).draggable("destroy")});$(this.element).draggable("destroy").remove();workflow.remove_node(this)},make_active:function(){$(this.element).addClass("toolForm-active")},make_inactive:function(){$(this.element).removeClass("toolForm-active")},init_field_data:function(D){var C=this.element;if(D.type){this.type=D.type}this.form_html=D.form_html;this.tool_state=D.tool_state;this.tool_errors=D.tool_errors;if(this.tool_errors){C.addClass("tool-node-error")}else{C.removeClass("tool-node-error")}var B=this;var A=C.find(".toolFormBody");A.find("div").remove();var E=$("
").appendTo(A);$.each(D.data_inputs,function(G,F){t=$("
");B.enable_input_terminal(t,F.name,F.extensions);E.append($("
"+F.label+"
").prepend(t))});if((D.data_inputs.length>0)&&(D.data_outputs.length>0)){A.append($("
"))}$.each(D.data_outputs,function(I,F){var H=$("
");B.enable_output_terminal(H,F.name,F.extension);var G=F.name;if(F.extension!="input"){G=G+" ("+F.extension+")"}A.append($("
"+G+"
").append(H))});workflow.node_changed(this)},update_field_data:function(D){var B=$(this.element),C=this;this.tool_state=D.state;this.form_html=D.form_html;this.tool_errors=D.tool_errors;if(this.tool_errors){B.addClass("tool-node-error")}else{B.removeClass("tool-node-error")}var E=B.find("div.inputs");var A=$("
");old=E.find("div.input-data-row");$.each(D.data_inputs,function(H,F){var G=$("
");C.enable_input_terminal(G,F.name,F.extensions);E.find("div[name="+F.name+"]").each(function(){$(this).find(".input-terminal").each(function(){var I=this.terminal.connectors[0];if(I){G[0].terminal.connectors[0]=I;I.handle2=G[0].terminal}});$(this).remove()});A.append($("
"+F.label+"
").prepend(G))});E.replaceWith(A);E.find("div.input-data-row > .terminal").each(function(){this.terminal.destroy()});this.changed();this.redraw()},error:function(C){var A=$(this.element).find(".toolFormBody");A.find("div").remove();var B="
"+C+"
";this.form_html=B;A.html(B);workflow.node_changed(this)},changed:function(){workflow.node_changed(this)}});function Workflow(){this.id_counter=0;this.nodes={};this.name=null;this.has_changes=false}$.extend(Workflow.prototype,{add_node:function(A){A.id=this.id_counter;this.id_counter++;this.nodes[A.id]=A;this.has_changes=true;A.workflow=this},remove_node:function(A){if(this.active_node==A){this.clear_active_node()}delete this.nodes[A.id];this.has_changes=true},remove_all:function(){wf=this;$.each(this.nodes,function(B,A){A.destroy();wf.remove_node(A)})},to_simple:function(){var A={};$.each(this.nodes,function(B,D){var E={};$.each(D.input_terminals,function(F,G){E[G.name]=null;$.each(G.connectors,function(H,I){E[G.name]={id:I.handle1.node.id,output_name:I.handle1.name}})});var C={id:D.id,type:D.type,tool_id:D.tool_id,tool_state:D.tool_state,tool_errors:D.tool_errors,input_connections:E,position:$(D.element).position()};A[D.id]=C});return{steps:A}},from_simple:function(A){wf=this;var B=0;wf.name=A.name;$.each(A.steps,function(E,D){var C=prebuild_node("tool",D.name,D.tool_id);C.init_field_data(D);if(D.position){C.element.css({top:D.position.top,left:D.position.left})}C.id=D.id;wf.nodes[C.id]=C;B=Math.max(B,parseInt(E))});wf.id_counter=B+1;$.each(A.steps,function(E,D){var C=wf.nodes[E];$.each(D.input_connections,function(G,F){if(F){var H=wf.nodes[F.id];var I=new Connector();I.connect(H.output_terminals[F.output_name],C.input_terminals[G]);I.redraw()}})})},clear_active_node:function(){if(this.active_node){this.active_node.make_inactive()}parent.show_form_for_tool("
No node selected
")},activate_node:function(A){this.clear_active_node();parent.show_form_for_tool(A.form_html,A);A.make_active();this.active_node=A},node_changed:function(A){this.has_changes=true;if(this.active_node==A){this.activate_node(A)}}});function prebuild_node(H,F,K){var E=$("
");var C=new Node(E);C.type=H;if(H=="tool"){C.tool_id=K}var J=$("
"+F+"
");E.append(J);E.css("left",$(window).scrollLeft()+20);E.css("top",$(window).scrollTop()+20);var I=$("
");var D="
loading tool info...
";I.append(D);C.form_html=D;E.append(I);var G=$("
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No node selected
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");var C=new Node(E);C.type=H;if(H=="tool"){C.tool_id=K}var J=$("
"+F+"
");E.append(J);E.css("left",$(window).scrollLeft()+20);E.css("top",$(window).scrollTop()+20);var I=$("
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loading tool info...
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L=$(this).data("draggable").element.get(0);(function(O){O.removeChild(L);O.appendChild(L)})(L.parentNode);$(this).css("z-index","100");$(this).find(".terminal").each(function(){this.terminal.redraw()});workflow.node_changed(this)}});return C}var ext_to_type=null;var type_to_type=null;function issubtype(B,A){B=ext_to_type[B];A=ext_to_type[A];return(A in type_to_type[B])}function populate_datatype_info(A){ext_to_type=A.ext_to_class_name;type_to_type=A.class_to_classes}; \ No newline at end of file diff --git a/static/scripts/packed/ie7-recalc.js b/static/scripts/packed/ie7-recalc.js index f07c5a69480..86a27f6ee1c 100644 --- a/static/scripts/packed/ie7-recalc.js +++ b/static/scripts/packed/ie7-recalc.js @@ -1,2 +1 @@ -/* IE7/IE8.js - copyright 2004-2008, Dean Edwards */ -(function(){if(!IE7.loaded)return;CLASSES=/\sie7_class\d+/g;IE7.CSS.extend({elements:{},handlers:[],reset:function(){this.removeEventHandlers();var a=this.elements;for(var b in 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this.each(function(){$(":submit,input:image",this).unbind("click",clickHandler)})};$.fn.formToArray=function(semantic){var a=[];if(this.length==0){return a}var form=this[0];var els=semantic?form.getElementsByTagName("*"):form.elements;if(!els){return a}for(var i=0,max=els.length;i Date: Fri, 8 Aug 2008 13:42:32 -0400 Subject: [PATCH 2/4] Reports: Wrap the stderr and traceback in pre tags so they display nicely. --- .../webapps/reports/static/january_2008_style/blue/base.css | 3 +++ lib/galaxy/webapps/reports/templates/jobs_all_unfinished.mako | 4 ++-- .../webapps/reports/templates/jobs_specified_date_all.mako | 4 ++-- .../reports/templates/jobs_specified_date_in_error.mako | 4 ++-- lib/galaxy/webapps/reports/templates/jobs_tool_for_month.mako | 4 ++-- lib/galaxy/webapps/reports/templates/jobs_user_for_month.mako | 4 ++-- 6 files changed, 13 insertions(+), 10 deletions(-) diff --git a/lib/galaxy/webapps/reports/static/january_2008_style/blue/base.css b/lib/galaxy/webapps/reports/static/january_2008_style/blue/base.css index 548dc61ff25..e808dfbc843 100644 --- a/lib/galaxy/webapps/reports/static/january_2008_style/blue/base.css +++ b/lib/galaxy/webapps/reports/static/january_2008_style/blue/base.css @@ -322,3 +322,6 @@ div.debug display: none; } +pre { + font-size: 80%; +} diff --git a/lib/galaxy/webapps/reports/templates/jobs_all_unfinished.mako b/lib/galaxy/webapps/reports/templates/jobs_all_unfinished.mako index f30269b2adc..0ea0dc7d734 100644 --- a/lib/galaxy/webapps/reports/templates/jobs_all_unfinished.mako +++ b/lib/galaxy/webapps/reports/templates/jobs_all_unfinished.mako @@ -60,13 +60,13 @@ Stderr - ${job[9]} + 
${job[9]}
Stack Trace - ${job[10]} + 
${job[10]}
Info diff --git a/lib/galaxy/webapps/reports/templates/jobs_specified_date_all.mako b/lib/galaxy/webapps/reports/templates/jobs_specified_date_all.mako index d36d757628d..ffaabc6ce48 100644 --- a/lib/galaxy/webapps/reports/templates/jobs_specified_date_all.mako +++ b/lib/galaxy/webapps/reports/templates/jobs_specified_date_all.mako @@ -64,13 +64,13 @@ Stderr - ${job[9]} + 
${job[9]}
Stack Trace - ${job[10]} + 
${job[10]}
Info diff --git a/lib/galaxy/webapps/reports/templates/jobs_specified_date_in_error.mako b/lib/galaxy/webapps/reports/templates/jobs_specified_date_in_error.mako index 8e7a1f24889..2f5c5f52f85 100644 --- a/lib/galaxy/webapps/reports/templates/jobs_specified_date_in_error.mako +++ b/lib/galaxy/webapps/reports/templates/jobs_specified_date_in_error.mako @@ -51,13 +51,13 @@ Stderr - ${job[9]} + 
${job[9]}
Stack Trace - ${job[10]} + 
${job[10]}
Info diff --git a/lib/galaxy/webapps/reports/templates/jobs_tool_for_month.mako b/lib/galaxy/webapps/reports/templates/jobs_tool_for_month.mako index 1755fa3d84e..d8884b6e6a9 100644 --- a/lib/galaxy/webapps/reports/templates/jobs_tool_for_month.mako +++ b/lib/galaxy/webapps/reports/templates/jobs_tool_for_month.mako @@ -64,13 +64,13 @@ Stderr - ${job[9]} + 
${job[9]}
Stack Trace - ${job[10]} + 
${job[10]}
Info diff --git a/lib/galaxy/webapps/reports/templates/jobs_user_for_month.mako b/lib/galaxy/webapps/reports/templates/jobs_user_for_month.mako index f7669aa4451..39f3a956a61 100644 --- a/lib/galaxy/webapps/reports/templates/jobs_user_for_month.mako +++ b/lib/galaxy/webapps/reports/templates/jobs_user_for_month.mako @@ -64,13 +64,13 @@ Stderr - ${job[9]} + 
${job[9]}
Stack Trace - ${job[10]} + 
${job[10]}
Info From 02f2ff3c858657d85ebf000e485a3669abe37df6 Mon Sep 17 00:00:00 2001 From: Greg Von Kuster Date: Tue, 12 Aug 2008 09:18:47 -0400 Subject: [PATCH 3/4] Fix for Extract Genomic DNA when input file metadata missing strand column value. --- tools/extract/extract_genomic_dna.py | 44 +++++++++++---------------- tools/extract/extract_genomic_dna.xml | 2 +- 2 files changed, 18 insertions(+), 28 deletions(-) diff --git a/tools/extract/extract_genomic_dna.py b/tools/extract/extract_genomic_dna.py index 4bb2209dd96..fee390db07c 100644 --- a/tools/extract/extract_genomic_dna.py +++ b/tools/extract/extract_genomic_dna.py @@ -1,7 +1,10 @@ #!/usr/bin/env python """ -usage: extract_genomic_dna.py $input $out_file1 ${input.metadata.chromCol} ${input.metadata.startCol} ${input.metadata.endCol} ${input.metadata.strandCol} $dbkey $out_format GALAXY_DATA_INDEX_DIR -by Wen-Yu Chung +usage: %prog $input $out_file1 + -1, --cols=N,N,N,N: Columns for start, end, strand in input file + -d, --dbkey=N: Genome build of input file + -o, --output_format=N: the data type of the output file + -g, --GALAXY_DATA_INDEX_DIR=N: the directory containing alignseq.loc and twobit.loc """ from galaxy import eggs import pkg_resources @@ -10,6 +13,7 @@ import sys, string, os, re from bx.cookbook import doc_optparse import bx.seq.nib import bx.seq.twobit +from galaxy.tools.util.galaxyops import * assert sys.version_info[:2] >= ( 2, 4 ) @@ -54,32 +58,18 @@ def check_twobit_file( dbkey, GALAXY_DATA_INDEX_DIR ): return twobit_path def __main__(): - input_filename = sys.argv[1] - output_filename = sys.argv[2] - includes_strand_col = False + options, args = doc_optparse.parse( __doc__ ) + try: + chrom_col, start_col, end_col, strand_col = parse_cols_arg( options.cols ) + dbkey = options.dbkey + output_format = options.output_format + GALAXY_DATA_INDEX_DIR = options.GALAXY_DATA_INDEX_DIR + input_filename, output_filename = args + except: + doc_optparse.exception() + + includes_strand_col = strand_col >= 0 strand = None - # If any of the following exceptions are thrown, we need to improve the metadata validator. - try: - chrom_col = int( sys.argv[3] ) - 1 - except: - stop_err( "Chrom column not properly set, click the pencil icon in your history item to set it." ) - try: - start_col = int( sys.argv[4] ) - 1 - except: - stop_err( "Start column not properly set, click the pencil icon in your history item to set it." ) - try: - end_col = int( sys.argv[5] ) - 1 - except: - stop_err( "End column not properly set, click the pencil icon in your history item to set it." ) - try: - strand_col = int( sys.argv[6] ) - 1 - if strand_col >= 0: - includes_strand_col = True - except: - pass - dbkey = sys.argv[7] - output_format = sys.argv[8] - GALAXY_DATA_INDEX_DIR = sys.argv[9] nibs = {} twobits = {} nib_path = check_nib_file( dbkey, GALAXY_DATA_INDEX_DIR ) diff --git a/tools/extract/extract_genomic_dna.xml b/tools/extract/extract_genomic_dna.xml index f2deb9ef93a..39f966d595d 100644 --- a/tools/extract/extract_genomic_dna.xml +++ b/tools/extract/extract_genomic_dna.xml @@ -1,6 +1,6 @@ using coordinates from assembled/unassembled genomes - extract_genomic_dna.py $input $out_file1 ${input.metadata.chromCol} ${input.metadata.startCol} ${input.metadata.endCol} ${input.metadata.strandCol} $dbkey $out_format ${GALAXY_DATA_INDEX_DIR} + extract_genomic_dna.py $input $out_file1 -1 ${input.metadata.chromCol},${input.metadata.startCol},${input.metadata.endCol},${input.metadata.strandCol} -d $dbkey -o $out_format -g ${GALAXY_DATA_INDEX_DIR} From 50107f946ac180a7516ea4e6e6c35205c67eb452 Mon Sep 17 00:00:00 2001 From: Greg Von Kuster Date: Tue, 12 Aug 2008 10:04:28 -0400 Subject: [PATCH 4/4] Fix for interval2maf.py when metadata missing strand column value. --- tools/maf/interval2maf.py | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/tools/maf/interval2maf.py b/tools/maf/interval2maf.py index eaa7b15f0e2..498f51c8f23 100755 --- a/tools/maf/interval2maf.py +++ b/tools/maf/interval2maf.py @@ -54,23 +54,22 @@ def __main__(): if options.chromCol: chromCol = int( options.chromCol ) - 1 else: - print >>sys.stderr, "Chromosome column has not been specified." + print >>sys.stderr, "Chromosome column not set, click the pencil icon in the history item to set the metadata attributes." sys.exit() if options.startCol: startCol = int( options.startCol ) - 1 else: - print >>sys.stderr, "Start column has not been specified." + print >>sys.stderr, "Start column not set, click the pencil icon in the history item to set the metadata attributes." sys.exit() if options.endCol: endCol = int( options.endCol ) - 1 else: - print >>sys.stderr, "End column has not been specified." + print >>sys.stderr, "End column not set, click the pencil icon in the history item to set the metadata attributes." sys.exit() if options.strandCol: strandCol = int( options.strandCol ) - 1 else: - print >>sys.stderr, "Strand column has not been specified." - sys.exit() + strandCol = -1 if options.interval_file: interval_file = options.interval_file else: