Enable flake8-implicit-str-concat ruff rules

See https://docs.astral.sh/ruff/rules/#flake8-implicit-str-concat-isc

scripts/api/upload_to_history.py

@@ -12,7 +12,7 @@ try:
 except ImportError:
     print(
         "Could not import the requests module. See http://docs.python-requests.org/en/latest/"
-        + " or install with 'pip install requests'"
+        " or install with 'pip install requests'"
     )
     raise
 
@@ -46,7 +46,7 @@ if __name__ == "__main__":
     if len(sys.argv) < 5:
         print(
             "history_upload.py <api key> <galaxy base url> <history id> <filepath to upload>\n"
-            + "  (where galaxy base url is just the root url where your Galaxy is served; e.g. 'localhost:8080')"
+            "  (where galaxy base url is just the root url where your Galaxy is served; e.g. 'localhost:8080')"
         )
         sys.exit(1)
 

scripts/cleanup_datasets/admin_cleanup_datasets.py

@@ -93,7 +93,7 @@ def main():
         help="config file (legacy, use --config instead)",
     )
     parser.add_argument("-d", "--days", dest="days", action="store", type=int, help="number of days (60)", default=60)
-    parser.add_argument("--tool_id", default=None, help="Text to match against tool_id" "Default: match all")
+    parser.add_argument("--tool_id", default=None, help="Text to match against tool_id. Default: match all")
     parser.add_argument(
         "--template",
         default=None,
@@ -121,10 +121,10 @@ def main():
         default=False,
     )
     parser.add_argument(
-        "--smtp", default=None, help="SMTP Server to use to send email. " "Default: [read from galaxy config file]"
+        "--smtp", default=None, help="SMTP Server to use to send email. Default: [read from galaxy config file]"
     )
     parser.add_argument(
-        "--fromaddr", default=None, help="From address to use to send email. " "Default: [read from galaxy config file]"
+        "--fromaddr", default=None, help="From address to use to send email. Default: [read from galaxy config file]"
     )
     populate_config_args(parser)
 
@@ -138,14 +138,12 @@ def main():
     if args.smtp is not None:
         app_properties["smtp_server"] = args.smtp
     if app_properties.get("smtp_server") is None:
-        parser.error("SMTP Server must be specified as an option (--smtp) " "or in the config file (smtp_server)")
+        parser.error("SMTP Server must be specified as an option (--smtp) or in the config file (smtp_server)")
 
     if args.fromaddr is not None:
         app_properties["email_from"] = args.fromaddr
     if app_properties.get("email_from") is None:
-        parser.error(
-            "From address must be specified as an option " "(--fromaddr) or in the config file " "(email_from)"
-        )
+        parser.error("From address must be specified as an option (--fromaddr) or in the config file (email_from)")
 
     scriptdir = os.path.dirname(os.path.abspath(__file__))
     template_file = args.template
@@ -262,7 +260,7 @@ def administrative_delete_datasets(
                     # Mark the HistoryDatasetAssociation as deleted
                     hda.deleted = True
                     app.sa_session.add(hda)
-                    print("Marked HistoryDatasetAssociation id %d as " "deleted" % hda.id)
+                    print("Marked HistoryDatasetAssociation id %d as deleted" % hda.id)
                 session = app.sa_session()
                 with transaction(session):
                     session.commit()
@@ -270,7 +268,7 @@ def administrative_delete_datasets(
     emailtemplate = Template(filename=template_file)
     for email, dataset_list in user_notifications.items():
         msgtext = emailtemplate.render(email=email, datasets=dataset_list, cutoff=cutoff_days)
-        subject = "Galaxy Server Cleanup " "- %d datasets DELETED" % len(dataset_list)
+        subject = "Galaxy Server Cleanup - %d datasets DELETED" % len(dataset_list)
         fromaddr = config.email_from
         print()
         print(f"From: {fromaddr}")

scripts/rst2html.py

@@ -22,6 +22,6 @@ from docutils.core import (
     publish_cmdline,
 )
 
-description = "Generates (X)HTML documents from standalone reStructuredText " "sources.  " + default_description
+description = "Generates (X)HTML documents from standalone reStructuredText sources.  " + default_description
 
 publish_cmdline(writer_name="html", description=description)

scripts/runtime_stats.py

@@ -82,20 +82,20 @@ def parse_arguments():
         "--like",
         action="store_true",
         default=False,
-        help="Use SQL `LIKE` operator to find " "a shed-installed tool using the tool's " '"short" id',
+        help='Use SQL `LIKE` operator to find a shed-installed tool using the tool\'s "short" id',
     )
     populate_config_args(parser)
     parser.add_argument("-d", "--debug", action="store_true", default=False, help="Print extra info")
     parser.add_argument("-m", "--min", type=int, default=-1, help="Ignore runtimes less than MIN seconds")
     parser.add_argument("-M", "--max", type=int, default=-1, help="Ignore runtimes greater than MAX seconds")
-    parser.add_argument("-u", "--user", help="Return stats for only this user (id, email, " "or username)")
+    parser.add_argument("-u", "--user", help="Return stats for only this user (id, email, or username)")
     parser.add_argument(
         "-s", "--source", default="metrics", help="Runtime data source (SOURCES: {})".format(", ".join(DATA_SOURCES))
     )
     args = parser.parse_args()
 
     if args.like and "/" in args.tool_id:
-        print("ERROR: Do not use --like with a tool shed tool id (the tool " "id should not contain `/` characters)")
+        print("ERROR: Do not use --like with a tool shed tool id (the tool id should not contain `/` characters)")
         sys.exit(2)
 
     args.source = args.source.lower()

scripts/tool_shed/deprecate_repositories_without_metadata.py

@@ -106,8 +106,8 @@ def send_mail_to_owner(app, owner, email, repositories_deprecated, days=14):
     subject = f"Regarding your tool shed repositories at {url}"
     message_body_template = (
         "The tool shed automated repository checker has discovered that one or more of your repositories hosted "
-        + "at this tool shed url ${url} have remained empty for over ${days} days, so they have been marked as deprecated. If you have plans "
-        + "for these repositories, you can mark them as un-deprecated at any time."
+        "at this tool shed url ${url} have remained empty for over ${days} days, so they have been marked as deprecated. If you have plans "
+        "for these repositories, you can mark them as un-deprecated at any time."
     )
     message_template = string.Template(message_body_template)
     body = "\n".join(textwrap.wrap(message_template.safe_substitute(days=days, url=url), width=95))