From 52e4b6e89e862ce2a9e3897782a0836272be6581 Mon Sep 17 00:00:00 2001 From: John Chilton Date: Wed, 21 Dec 2016 16:10:18 -0500 Subject: [PATCH] Remove seemingly unused file sort_gtf.py. Added in df28aec040f05f2d97856f5d8c4f07ba2a7e1966 - not used in that commit. --- tools/filters/gff/sort_gtf.py | 20 -------------------- 1 file changed, 20 deletions(-) delete mode 100644 tools/filters/gff/sort_gtf.py diff --git a/tools/filters/gff/sort_gtf.py b/tools/filters/gff/sort_gtf.py deleted file mode 100644 index 9cd9e0db65b..00000000000 --- a/tools/filters/gff/sort_gtf.py +++ /dev/null @@ -1,20 +0,0 @@ -#!/usr/bin/env python -import sys - -from galaxy.datatypes.util.gff_util import read_unordered_gtf - -# -# Process inputs. -# - -in_fname = sys.argv[1] -out_fname = sys.argv[2] - -out = open( out_fname, 'w' ) -for feature in read_unordered_gtf( open( in_fname, 'r' ) ): - # Print feature. - for interval in feature.intervals: - out.write( "\t".join(interval.fields) ) -out.close() - -# TODO: print status information: how many lines processed and features found.