mirror of
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Merging with dev
This commit is contained in:
anuprulez
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var jQuery=require("jquery"),$=jQuery,GalaxyApp=require("galaxy").GalaxyApp,QUERY_STRING=require("utils/query-string-parsing"),PANEL=require("layout/panel"),ToolPanel=require("./tool-panel"),HistoryPanel=require("./history-panel"),PAGE=require("layout/page"),ToolForm=require("mvc/tool/tool-form"),UserPreferences=require("mvc/user/user-preferences");Tours=require("mvc/tours"),window.app=function(a,b){window.Galaxy=new GalaxyApp(a,b),Galaxy.debug("analysis app");var c=a.config,d=new ToolPanel({el:"#left",userIsAnonymous:Galaxy.user.isAnonymous(),toolbox:c.toolbox,toolbox_in_panel:c.toolbox_in_panel,stored_workflow_menu_entries:c.stored_workflow_menu_entries,nginx_upload_path:c.nginx_upload_path,ftp_upload_site:c.ftp_upload_site,default_genome:c.default_genome,default_extension:c.default_extension}),e=new PANEL.CenterPanel({el:"#center"}),f=new HistoryPanel({el:"#right",galaxyRoot:Galaxy.root,userIsAnonymous:Galaxy.user.isAnonymous(),allow_user_dataset_purge:c.allow_user_dataset_purge}),g=new PAGE.PageLayoutView(_.extend(a,{el:"body",left:d,center:e,right:f}));Galaxy.page=g,Galaxy.params=Galaxy.config.params,Galaxy.toolPanel=d.tool_panel,Galaxy.upload=d.uploadButton,Galaxy.currHistoryPanel=f.historyView,Galaxy.currHistoryPanel.listenToGalaxy(Galaxy),Galaxy.app={display:function(a){$(".select2-hidden-accessible").remove(),e.display(a)}},Galaxy.router=new(Backbone.Router.extend({initialize:function(a){this.options=a},execute:function(a,b,c){Galaxy.debug("router execute:",a,b,c);var d=QUERY_STRING.parse(b.pop());b.push(d),a&&a.apply(this,b)},routes:{"(/)":"home","(/)root*":"home","(/)tours(/)(:tour_id)":"show_tours","(/)users(/)":"show_users"},show_tours:function(a){a?Tours.giveTour(a):e.display(new Tours.ToursView)},show_users:function(){e.display(new UserPreferences.View)},home:function(a){a.tool_id||a.job_id?"upload1"===a.tool_id?(Galaxy.upload.show(),this._loadCenterIframe("welcome")):this._loadToolForm(a):this._loadCenterIframe(a.workflow_id?"workflow/run?id="+a.workflow_id:a.m_c?a.m_c+"/"+a.m_a:"welcome")},_loadToolForm:function(a){a.id=a.tool_id,e.display(new ToolForm.View(a))},_loadCenterIframe:function(a,b){b=b||Galaxy.root,a=b+a,e.$("#galaxy_main").prop("src",a)}}))(a),$(function(){g.render(),g.right.historyView.loadCurrentHistory(),Galaxy.listenTo(g.right.historyView,"history-size-change",function(){Galaxy.user.fetch({url:Galaxy.user.urlRoot()+"/"+(Galaxy.user.id||"current")})}),g.right.historyView.connectToQuotaMeter(g.masthead.quotaMeter),Backbone.history.start({root:Galaxy.root,pushState:!0})})};
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//# sourceMappingURL=../maps/analysis.js.map
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define(["utils/utils","layout/masthead","mvc/ui/ui-modal","mvc/ui/ui-modal","mvc/user/user-quotameter"],function(a,b,c,d){return Backbone.View.extend({initialize:function(a){Galaxy.app=this,Galaxy.modal=new c.View,Galaxy.masthead=new b.View(a),this.setElement(this._template(a)),this.$el.append(Galaxy.masthead.$el),$("body").append(this.$el),this.render()},render:function(){require(["app/analysis"],function(a){window.console.log(a)},function(a){console.debug(a)})},initialize2:function(e){this.options=a.merge(e,{}),this.params=this.options.params,this.setElement(this._template(e)),Galaxy.app=this,$("body").append(this.$el);var f=$(this.$el.parent()).attr("scroll","no").addClass("full-content");this.options.message_box_visible&&(f.addClass("has-message-box"),this.$("#messagebox").show()),this.options.show_inactivity_warning&&(f.addClass("has-inactivity-box"),this.$("#inactivebox").show()),Galaxy.masthead||(Galaxy.masthead=new b.View(e),Galaxy.modal=new c.View,Galaxy.menu=new Menu.GalaxyMenu({masthead:Galaxy.masthead,config:e}),Galaxy.quotaMeter=new d.UserQuotaMeter({model:Galaxy.user,el:Galaxy.masthead.$(".quota-meter-container")}).render())},display:function(a,b){$(".select2-hidden-accessible").remove(),this.panels&&this.panels[b||"center"].display(a)},_buildPanels:function(b,c){this.panels=[];var d=["left","center","right"];for(var e in d){var f=d[e],g=this.panels[f]=new b[f](c);if("center"==f)this.$("#center").append(g.$el);else{var h=a.merge(g.components,{header:{title:"",cls:"",buttons:[]},body:{cls:""}}),i=$(this._templatePanel(f));i.find(".panel-header-text").html(h.header.title),i.find(".unified-panel-header-inner").addClass(h.header.cls);for(var e in h.header.buttons)i.find(".panel-header-buttons").append(h.header.buttons[e].$el);i.find(".unified-panel-body").addClass(h.body.cls).append(g.$el);{new Panel({center:this.$("#center"),panel:i,drag:i.find(".unified-panel-footer > .drag"),toggle:i.find(".unified-panel-footer > .panel-collapse"),right:"right"==f})}this.$el.append(i)}}},_templatePanel:function(a){return'<div id="'+a+'"><div class="unified-panel-header" unselectable="on"><div class="unified-panel-header-inner"><div class="panel-header-buttons" style="float: right"/><div class="panel-header-text"/></div></div><div class="unified-panel-body"/><div class="unified-panel-footer"><div class="panel-collapse '+a+'"/><div class="drag"/></div></div>'},_template:function(){return'<div id="everything" style="position: absolute; top: 0; left: 0; width: 100%; height: 100%;"><div id="background"/><div id="messagebox" class="panel-'+Galaxy.config.message_box_class+'-message" style="display: none;">'+Galaxy.config.message_box_content+'</div><div id="inactivebox" class="panel-warning-message" style="display: none;">'+Galaxy.config.inactivity_box_content+' <a href="'+Galaxy.root+'user/resend_verification">Resend verification.</a></div><div id="center" class="inbound"/></div>'}})});
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//# sourceMappingURL=../maps/app.js.map
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define([],function(){Backbone.View.extend({initialize:function(a){this.options=Utils.merge(a,{}),this.setElement(this._template());var b=this.options.params;this.$("#galaxy_main").prop("src",Galaxy.root+(b.tool_id&&"tool_runner?"+$.param(b)||b.workflow_id&&"workflow/run?id="+b.workflow_id||b.m_c&&b.m_c+"/"+b.m_a||Galaxy.config.require_login&&!Galaxy.user.id&&"user/login"||"root/welcome"));var c=this;this.$("#galaxy_main").on("load",function(){$(this).show(),c.$("#center-panel").empty().hide()})},display:function(a){this.$("#galaxy_main").hide(),this.$("#center-panel").empty().scrollTop(0).append(a).show()},_template:function(){return'<div style="position: absolute; width: 100%; height: 100%"><iframe name="galaxy_main" id="galaxy_main" frameborder="0" style="position: absolute; width: 100%; height: 100%;"/><div id="center-panel" style="position: absolute; width: 100%; height: 100%; padding: 10px; overflow: auto;"/></div>'}}),Backbone.View.extend({initialize:function(a){if(this.options=Utils.merge(a,{}),this.setElement(this._template()),Galaxy.user.id||!Galaxy.config.require_login){var b=new Tools.ToolSearch({spinner_url:a.spinner_url,search_url:a.search_url,hidden:!1}),c=new Tools.ToolCollection(a.toolbox),d=new Tools.ToolPanel({tool_search:b,tools:c,layout:a.toolbox_in_panel});tool_panel_view=new Tools.ToolPanelView({model:d}),Galaxy.toolPanel=d,d.get("layout").size()>0&&(tool_panel_view.render(),this.$(".toolMenu").show()),this.$el.prepend(tool_panel_view.$el),this.$("#internal-workflows").append(this._templateTool({title:"All workflows",href:"workflow/list_for_run"}));for(var e in a.stored_workflow_menu_entries){var f=a.stored_workflow_menu_entries[e];this.$("#internal-workflows").append(this._templateTool({title:f.stored_workflow.name,href:"workflow/run?id="+f.encoded_stored_workflow_id}))}this.$("a[minsizehint]").click(function(){parent.handle_minwidth_hint&&parent.handle_minwidth_hint($(this).attr("minsizehint"))}),Galaxy.upload=new Upload(a),this.components={header:{title:"Tools",buttons:[Galaxy.upload]}}}},_templateTool:function(a){return'<div class="toolTitle"><a href="'+Galaxy.root+a.href+'" target="galaxy_main">'+a.title+"</a></div>"},_template:function(){return'<div class="toolMenuContainer"><div class="toolMenu" style="display: none"><div id="search-no-results" style="display: none; padding-top: 5px"><em><strong>Search did not match any tools.</strong></em></div></div><div class="toolSectionPad"/><div class="toolSectionPad"/><div class="toolSectionTitle" id="title_XXinternalXXworkflow"><span>Workflows</span></div><div id="internal-workflows" class="toolSectionBody"><div class="toolSectionBg"/></div></div>'}}),Backbone.View.extend({initialize:function(a){this.options=Utils.merge(a,{}),this.setElement(this._template());var b=new Ui.ButtonLink({id:"history-refresh-button",title:"Refresh history",cls:"panel-header-button",icon:"fa fa-refresh",onclick:function(){top.Galaxy&&top.Galaxy.currHistoryPanel&&top.Galaxy.currHistoryPanel.loadCurrentHistory()}}),c=new Ui.ButtonLink({id:"history-options-button",title:"History options",cls:"panel-header-button",target:"galaxy_main",icon:"fa fa-cog",href:Galaxy.root+"root/history_options"}),d=new Ui.ButtonLink({id:"history-view-multi-button",title:"View all histories",cls:"panel-header-button",icon:"fa fa-columns",href:Galaxy.root+"history/view_multiple"});this.components={header:{title:"History",cls:"history-panel-header",buttons:[b,c,d]},body:{cls:"unified-panel-body-background"}},Galaxy.historyOptionsMenu=optionsMenu(c.$el,{anonymous:Galaxy.user.id&&"true"||"false",purgeAllowed:Galaxy.config.allow_user_dataset_purge&&"true"||"false",root:Galaxy.root}),Galaxy.currHistoryPanel=new HistoryPanel.CurrentHistoryPanel({el:this.$el,purgeAllowed:Galaxy.config.allow_user_dataset_purge,linkTarget:"galaxy_main",$scrollContainer:function(){return this.$el.parent()}}),Galaxy.currHistoryPanel.connectToQuotaMeter(Galaxy.quotaMeter),Galaxy.currHistoryPanel.listenToGalaxy(Galaxy),Galaxy.currHistoryPanel.loadCurrentHistory()},_template:function(){return'<div id="current-history-panel" class="history-panel"/>'}});return{left:Backbone.View.extend({initialize:function(){}})}});
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//# sourceMappingURL=../../maps/app/analysis.js.map
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webpackJsonp([4],[function(e,r,n){(function(e){var r=n(1),a=r,i=n(57).GalaxyApp,o=n(10),t=n(5),l=n(59);window.app=function(n,c){window.Galaxy=new i(n,c),Galaxy.debug("login app");var d=encodeURI(n.redirect);if(!n.show_welcome_with_login){var w=r.param({use_panels:"True",redirect:d});return void(window.location.href=Galaxy.root+"user/login?"+w)}var p=new l.PageLayoutView(e.extend(n,{el:"body",center:new o.CenterPanel({el:"#center"}),right:new o.RightPanel({title:t("Login required"),el:"#right"})}));a(function(){var e=r.param({redirect:d}),a=Galaxy.root+"user/login?"+e;p.render(),p.center.$("#galaxy_main").prop("src",n.welcome_url),p.right.$(".unified-panel-body").css("overflow","hidden").html('<iframe src="'+a+'" frameborder="0" style="width: 100%; height: 100%;"/>')})}}).call(r,n(2))}]);
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webpackJsonp([4],[function(e,r,n){(function(e){var r=n(1),a=r,i=n(56).GalaxyApp,o=n(10),t=n(5),l=n(58);window.app=function(n,c){window.Galaxy=new i(n,c),Galaxy.debug("login app");var d=encodeURI(n.redirect);if(!n.show_welcome_with_login){var w=r.param({use_panels:"True",redirect:d});return void(window.location.href=Galaxy.root+"user/login?"+w)}var p=new l.PageLayoutView(e.extend(n,{el:"body",center:new o.CenterPanel({el:"#center"}),right:new o.RightPanel({title:t("Login required"),el:"#right"})}));a(function(){var e=r.param({redirect:d}),a=Galaxy.root+"user/login?"+e;p.render(),p.center.$("#galaxy_main").prop("src",n.welcome_url),p.right.$(".unified-panel-body").css("overflow","hidden").html('<iframe src="'+a+'" frameborder="0" style="width: 100%; height: 100%;"/>')})}}).call(r,n(2))}]);
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//# sourceMappingURL=login.bundled.js.map
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function append_notebook(a){clear_main_area(),$("#main").append('<iframe frameBorder="0" seamless="seamless" style="width: 100%; height: 100%; overflow:hidden;" scrolling="no" src="'+a+'"></iframe>')}function clear_main_area(){$("#spinner").remove(),$("#main").children().remove()}function display_spinner(){$("#main").append('<img id="spinner" src="'+galaxy_root+'static/style/largespinner.gif" style="position:absolute;margin:auto;top:0;left:0;right:0;bottom:0;">')}function test_ie_availability(a,b){var c=0;display_spinner(),interval=setInterval(function(){$.ajax({url:a,xhrFields:{withCredentials:!0},type:"GET",timeout:500,success:function(){console.log("Connected to IE, returning"),clearInterval(interval),b()},error:function(){c++,console.log("Request "+c),c>30&&(clearInterval(interval),clear_main_area(),toastr.error("Could not connect to IE, contact your administrator","Error",{closeButton:!0,timeOut:2e4,tapToDismiss:!1}))}})},1e3)}
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function append_notebook(a){clear_main_area(),$("#main").append('<iframe frameBorder="0" seamless="seamless" style="width: 100%; height: 100%; overflow:hidden;" scrolling="no" src="'+a+'"></iframe>')}function clear_main_area(){$("#spinner").remove(),$("#main").children().remove()}function display_spinner(){$("#main").append('<img id="spinner" src="'+galaxy_root+'static/style/largespinner.gif" style="position:absolute;margin:auto;top:0;left:0;right:0;bottom:0;">')}function load_when_ready(a,b){var c=0,d=1e3,e=15e3,f=1e3,g=function(){$.ajax({url:a,xhrFields:{withCredentials:!0},type:"GET",timeout:500,dataType:"json",success:function(a){1==a?(console.log("Galaxy reports IE container ready, returning"),clear_main_area(),toastr.clear(),b()):0==a?(0==c&&(display_spinner(),toastr.info("Galaxy is launching a container in which to run this interactive environment. Please wait...",{closeButton:!0,tapToDismiss:!1})),c++,e>d&&(d+=f),console.log("Readiness request "+c+" sleeping "+d/1e3+"s"),window.setTimeout(g,d)):(clear_main_area(),toastr.clear(),toastr.error("Galaxy failed to launch a container in which to run this interactive environment, contact your administrator.","Error",{closeButton:!0,tapToDismiss:!1}))}})};window.setTimeout(g,d)}function test_ie_availability(a,b){var c=0;display_spinner(),interval=setInterval(function(){$.ajax({url:a,xhrFields:{withCredentials:!0},type:"GET",timeout:500,success:function(){console.log("Connected to IE, returning"),clearInterval(interval),b()},error:function(){c++,console.log("Availability request "+c),c>30&&(clearInterval(interval),clear_main_area(),toastr.error("Could not connect to IE, contact your administrator","Error",{closeButton:!0,timeOut:2e4,tapToDismiss:!1}))}})},1e3)}
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//# sourceMappingURL=../maps/galaxy.interactive_environments.js.map
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define([],function(){var a={_validationWarning:function(a,b){var c="validation-warning";"name"===a&&(a=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),b?(a=a||this.$("."+c),a.removeClass(c)):a.addClass(c)},_changeName:function(){this._validationWarning("name",!!this._getName())},_nameCheckForEnter:function(a){13!==a.keyCode||this.blocking||this._clickCreate()},_getName:function(){return _.escape(this.$(".collection-name").val())},_clickMoreHelp:function(a){a.stopPropagation(),this.$(".main-help").addClass("expanded"),this.$(".more-help").hide()},_clickLessHelp:function(a){a.stopPropagation(),this.$(".main-help").removeClass("expanded"),this.$(".more-help").show()},_toggleHelp:function(a){a.stopPropagation(),this.$(".main-help").toggleClass("expanded"),this.$(".more-help").toggle()},_showAlert:function(a,b){b=b||"alert-danger",this.$(".main-help").hide(),this.$(".header .alert").attr("class","alert alert-dismissable").addClass(b).show().find(".alert-message").html(a)},_hideAlert:function(){this.$(".main-help").show(),this.$(".header .alert").hide()},_cancelCreate:function(){"function"==typeof this.oncancel&&this.oncancel.call(this)},_clickCreate:function(){var a=this._getName();a?this.blocking||this.createList(a):this._validationWarning("name")},_creatorTemplates:{main:_.template(['<div class="header flex-row no-flex"></div>','<div class="middle flex-row flex-row-container"></div>','<div class="footer flex-row no-flex"></div>'].join(""))}};return{CollectionCreatorMixin:a}});
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//# sourceMappingURL=../../../maps/mvc/collection/base-creator.js.map
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define([],function(){return Backbone.View.extend({initialize:function(a,b){this.app=a,this.app_options=a.model?a.model.attributes:{},this.field=b&&b.field||new Backbone.View,this.model=b&&b.model||new Backbone.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up"}).set(b),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var c=this.model.get("collapsible_value");this.field.collapsed=void 0!==c&&JSON.stringify(this.model.get("value"))==JSON.stringify(c),this.listenTo(this.model,"change",this.render,this),this.render();var d=this;this.$collapsible.on("click",function(){d.field.collapsed=!d.field.collapsed,a.trigger&&a.trigger("change"),d.render()})},backdrop:function(){this.model.set("backdrop",!0)},error:function(a){this.model.set("error_text",a)},reset:function(){this.model.set("error_text",null)},render:function(){$(".tooltip").hide();var a=this.model.get("help",""),b=this.model.get("argument");b&&-1==a.indexOf("("+b+")")&&(a+=" ("+b+")"),this.$info.html(a),this.$el[this.model.get("hidden")?"hide":"show"](),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")||this.model.get("disabled")?"show":"hide"]().html(_.escape(this.model.get("text_value")));var c=this.model.get("error_text");if(this.$error[c?"show":"hide"](),this.$el[c?"addClass":"removeClass"]("ui-error"),this.$error_text.html(c),this.$backdrop[this.model.get("backdrop")?"show":"hide"](),this.field.collapsed||this.model.get("disabled")?this.$field.hide():this.$field.show(),this.field.model&&this.field.model.set({color:this.model.get("color"),style:this.model.get("style")}),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var d=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+d)).attr("data-original-title",this.model.get("text_"+d)).tooltip({placement:"bottom"})}},_template:function(){return $("<div/>").addClass("ui-form-element").append($("<div/>").addClass("ui-form-error ui-error").append($("<span/>").addClass("fa fa-arrow-down")).append($("<span/>").addClass("ui-form-error-text"))).append($("<div/>").addClass("ui-form-title").append($("<div/>").addClass("ui-form-collapsible").append($("<i/>").addClass("ui-form-collapsible-icon")).append($("<span/>").addClass("ui-form-collapsible-text"))).append($("<span/>").addClass("ui-form-title-text"))).append($("<div/>").addClass("ui-form-field").append($("<span/>").addClass("ui-form-info")).append($("<div/>").addClass("ui-form-backdrop"))).append($("<div/>").addClass("ui-form-preview"))}})});
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define([],function(){return Backbone.View.extend({initialize:function(a,b){this.app=a,this.app_options=a.model?a.model.attributes:{},this.field=b&&b.field||new Backbone.View,this.model=b&&b.model||new Backbone.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up"}).set(b),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var c=this.model.get("collapsible_value");this.field.collapsed=void 0!==c&&JSON.stringify(this.model.get("value"))==JSON.stringify(c),this.listenTo(this.model,"change",this.render,this),this.render();var d=this;this.$collapsible.on("click",function(){d.field.collapsed=!d.field.collapsed,a.trigger&&a.trigger("change"),d.render()})},backdrop:function(){this.model.set("backdrop",!0)},error:function(a){this.model.set("error_text",a)},reset:function(){!this.model.get("fixed")&&this.model.set("error_text",null)},render:function(){$(".tooltip").hide();var a=this.model.get("help",""),b=this.model.get("argument");b&&-1==a.indexOf("("+b+")")&&(a+=" ("+b+")"),this.$info.html(a),this.$el[this.model.get("hidden")?"hide":"show"](),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")||this.model.get("disabled")?"show":"hide"]().html(_.escape(this.model.get("text_value")));var c=this.model.get("error_text");if(this.$error[c?"show":"hide"](),this.$el[c?"addClass":"removeClass"]("ui-error"),this.$error_text.html(c),this.$backdrop[this.model.get("backdrop")?"show":"hide"](),this.field.collapsed||this.model.get("disabled")?this.$field.hide():this.$field.show(),this.field.model&&this.field.model.set({color:this.model.get("color"),style:this.model.get("style")}),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var d=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+d)).attr("data-original-title",this.model.get("text_"+d)).tooltip({placement:"bottom"})}},_template:function(){return $("<div/>").addClass("ui-form-element").append($("<div/>").addClass("ui-form-error ui-error").append($("<span/>").addClass("fa fa-arrow-down")).append($("<span/>").addClass("ui-form-error-text"))).append($("<div/>").addClass("ui-form-title").append($("<div/>").addClass("ui-form-collapsible").append($("<i/>").addClass("ui-form-collapsible-icon")).append($("<span/>").addClass("ui-form-collapsible-text"))).append($("<span/>").addClass("ui-form-title-text"))).append($("<div/>").addClass("ui-form-field").append($("<span/>").addClass("ui-form-info")).append($("<div/>").addClass("ui-form-backdrop"))).append($("<div/>").addClass("ui-form-preview"))}})});
|
||||
//# sourceMappingURL=../../../maps/mvc/form/form-input.js.map
|
||||
@@ -1,2 +1,2 @@
|
||||
define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-portlet","mvc/form/form-repeat","mvc/form/form-input","mvc/form/form-parameters"],function(a,b,c,d,e,f){var g=Backbone.View.extend({initialize:function(a,b){this.app=a,this.inputs=b.inputs,this.parameters=new f,this.setElement($("<div/>")),this.render()},render:function(){var a=this;this.$el.empty(),_.each(this.inputs,function(b){a.add(b)})},add:function(b){var c=jQuery.extend(!0,{},b);switch(c.id=b.id=a.uid(),this.app.input_list[c.id]=c,c.type){case"conditional":this._addConditional(c);break;case"repeat":this._addRepeat(c);break;case"section":this._addSection(c);break;default:this._addRow(c)}},_addConditional:function(a){var b=this;a.test_param.id=a.id,this.app.model.get("sustain_conditionals")&&(a.test_param.disabled=!0);var c=this._addRow(a.test_param);c.model&&c.model.set("onchange",function(c){var d=b.app.data.matchCase(a,c);for(var e in a.cases){var f=a.cases[e],g=b.$("#"+a.id+"-section-"+e),h=!1;for(var i in f.inputs)if(!f.inputs[i].hidden){h=!0;break}e==d&&h?g.fadeIn("fast"):g.hide()}b.app.trigger("change")});for(var d in a.cases){var e=new g(this.app,{inputs:a.cases[d].inputs});this._append(e.$el.addClass("ui-form-section"),a.id+"-section-"+d)}c.trigger("change")},_addRepeat:function(a){function b(b){var d=a.id+"-section-"+f++,e=new g(c.app,{inputs:b});h.add({id:d,$el:e.$el,ondel:function(){h.del(d),c.app.trigger("change")}})}for(var c=this,f=0,h=new d.View({title:a.title||"Repeat",min:a.min,max:a.max,onnew:function(){b(a.inputs),c.app.trigger("change")}}),i=_.size(a.cache),j=0;j<Math.max(Math.max(i,a.min||0),a.default||0);j++)b(i>j?a.cache[j]:a.inputs);this.app.model.get("sustain_repeats")&&h.hideOptions();var k=new e(this.app,{label:a.title||a.name,help:a.help,field:h});this._append(k.$el,a.id)},_addSection:function(a){var b=new c.View({title:a.title||a.name,cls:"ui-portlet-section",collapsible:!0,collapsible_button:!0,collapsed:!a.expanded});b.append(new g(this.app,{inputs:a.inputs}).$el),b.append($("<div/>").addClass("ui-form-info").html(a.help)),this.app.on("expand",function(a){b.$("#"+a).length>0&&b.expand()}),this._append(b.$el,a.id)},_addRow:function(a){var b=this,c=a.id;a.onchange=a.onchange||function(){b.app.trigger("change",c)};var d=this.parameters.create(a);this.app.field_list[c]=d;var f=new e(this.app,{name:a.name,label:a.hide_label?"":a.label||a.name,value:a.value,text_value:a.text_value,collapsible_value:a.collapsible_value,collapsible_preview:a.collapsible_preview,help:a.help,argument:a.argument,disabled:a.disabled,color:a.color,style:a.style,backdrop:a.backdrop,hidden:a.hidden,field:d});return this.app.element_list[c]=f,this._append(f.$el,a.id),d},_append:function(a,b){this.$el.append(a.addClass("section-row").attr("id",b))}});return{View:g}});
|
||||
define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-portlet","mvc/form/form-repeat","mvc/form/form-input","mvc/form/form-parameters"],function(a,b,c,d,e,f){var g=Backbone.View.extend({initialize:function(a,b){this.app=a,this.inputs=b.inputs,this.parameters=new f,this.setElement($("<div/>")),this.render()},render:function(){var a=this;this.$el.empty(),_.each(this.inputs,function(b){a.add(b)})},add:function(b){var c=jQuery.extend(!0,{},b);switch(c.id=b.id=a.uid(),this.app.input_list[c.id]=c,c.type){case"conditional":this._addConditional(c);break;case"repeat":this._addRepeat(c);break;case"section":this._addSection(c);break;default:this._addRow(c)}},_addConditional:function(a){var b=this;a.test_param.id=a.id,this.app.model.get("sustain_conditionals")&&(a.test_param.disabled=!0);var c=this._addRow(a.test_param);c.model&&c.model.set("onchange",function(c){var d=b.app.data.matchCase(a,c);for(var e in a.cases){var f=a.cases[e],g=b.$("#"+a.id+"-section-"+e),h=!1;for(var i in f.inputs)if(!f.inputs[i].hidden){h=!0;break}e==d&&h?g.fadeIn("fast"):g.hide()}b.app.trigger("change")});for(var d in a.cases){var e=new g(this.app,{inputs:a.cases[d].inputs});this._append(e.$el.addClass("ui-form-section"),a.id+"-section-"+d)}c.trigger("change")},_addRepeat:function(a){function b(b){var d=a.id+"-section-"+f++,e=new g(c.app,{inputs:b});h.add({id:d,$el:e.$el,ondel:function(){h.del(d),c.app.trigger("change")}})}for(var c=this,f=0,h=new d.View({title:a.title||"Repeat",min:a.min,max:a.max,onnew:function(){b(a.inputs),c.app.trigger("change")}}),i=_.size(a.cache),j=0;j<Math.max(Math.max(i,a.min||0),a.default||0);j++)b(i>j?a.cache[j]:a.inputs);this.app.model.get("sustain_repeats")&&h.hideOptions();var k=new e(this.app,{label:a.title||a.name,help:a.help,field:h});this._append(k.$el,a.id)},_addSection:function(a){var b=new c.View({title:a.title||a.name,cls:"ui-portlet-section",collapsible:!0,collapsible_button:!0,collapsed:!a.expanded});b.append(new g(this.app,{inputs:a.inputs}).$el),b.append($("<div/>").addClass("ui-form-info").html(a.help)),this.app.on("expand",function(a){b.$("#"+a).length>0&&b.expand()}),this._append(b.$el,a.id)},_addRow:function(a){var b=this,c=a.id;a.onchange=a.onchange||function(){b.app.trigger("change",c)};var d=this.parameters.create(a);this.app.field_list[c]=d;var f=new e(this.app,{name:a.name,label:a.hide_label?"":a.label||a.name,value:a.value,text_value:a.text_value,collapsible_value:a.collapsible_value,collapsible_preview:a.collapsible_preview,help:a.help,argument:a.argument,disabled:a.disabled,color:a.color,style:a.style,backdrop:a.backdrop,hidden:a.hidden,fixed:a.fixed,field:d});return this.app.element_list[c]=f,this._append(f.$el,a.id),d},_append:function(a,b){this.$el.append(a.addClass("section-row").attr("id",b))}});return{View:g}});
|
||||
//# sourceMappingURL=../../../maps/mvc/form/form-section.js.map
|
||||
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|
||||
define(["mvc/dataset/dataset-li","mvc/base-mvc","utils/localization"],function(a,b,c){"use strict";var d=a.DatasetListItemView,e=d.extend({className:d.prototype.className+" history-content",initialize:function(a,b){d.prototype.initialize.call(this,a,b)},toString:function(){var a=this.model?this.model+"":"(no model)";return"HDAListItemView("+a+")"}});return e.prototype.templates=function(){var a=b.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="hid"><%- dataset.hid %></span> ','<span class="name"><%- dataset.name %></span>',"</div>","</div>"],"dataset"),e=_.extend({},d.prototype.templates.warnings,{hidden:b.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',c("This dataset has been hidden"),"</div>","<% } %>"],"dataset")});return _.extend({},d.prototype.templates,{titleBar:a,warnings:e})}(),{HDAListItemView:e}});
|
||||
define(["mvc/dataset/dataset-li","mvc/base-mvc","utils/localization"],function(a,b,c){"use strict";var d=a.DatasetListItemView,e=d.extend({className:d.prototype.className+" history-content",initialize:function(a,b){d.prototype.initialize.call(this,a,b)},toString:function(){var a=this.model?this.model+"":"(no model)";return"HDAListItemView("+a+")"}});return e.prototype.templates=function(){var a=b.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="hid"><%- dataset.hid %></span> ','<span class="name"><%- dataset.name %></span>',"</div>","</br>",'<span class="nametags">',"<% _.each(dataset.nametags, function(tag){ %>",'<span class="label label-info"><%- tag %></span>',"<% }); %>","</span>","</div>"],"dataset"),e=_.extend({},d.prototype.templates.warnings,{hidden:b.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',c("This dataset has been hidden"),"</div>","<% } %>"],"dataset")});return _.extend({},d.prototype.templates,{titleBar:a,warnings:e})}(),{HDAListItemView:e}});
|
||||
//# sourceMappingURL=../../../maps/mvc/history/hda-li.js.map
|
||||
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|
||||
define(["utils/utils"],function(a){return Backbone.View.extend({initialize:function(b){var c=this;this.options=a.merge(b,{class_add:"upload-icon-button fa fa-square-o",class_remove:"upload-icon-button fa fa-check-square-o",class_partial:"upload-icon-button fa fa-minus-square-o",collection:null,onchange:function(){},onadd:function(){},onremove:function(){}}),this.collection=this.options.collection,this.setElement(this._template()),this.rows=[],a.get({url:Galaxy.root+"api/remote_files",success:function(a){c._fill(a)},error:function(){c._fill()}})},_fill:function(b){if(b&&b.length>0){this.$(".upload-ftp-content").html($(this._templateTable()));var c=0;for(index in b)this.rows.push(this._add(b[index])),c+=b[index].size;if(this.$(".upload-ftp-number").html(b.length+" files"),this.$(".upload-ftp-disk").html(a.bytesToString(c,!0)),this.collection){var d=this;this.$("._has_collection").show(),this.$select_all=this.$(".upload-selectall").addClass(this.options.class_add),this.$select_all.on("click",function(){var a=d.$select_all.hasClass(d.options.class_add);for(index in b){var c=b[index],e=d._find(c);(!e&&a||e&&!a)&&d.rows[index].trigger("click")}}),this._refresh()}}else this.$(".upload-ftp-content").html($(this._templateInfo()));this.$(".upload-ftp-wait").hide()},_add:function(a){var b=this,c=$(this._templateRow(a)),d=c.find(".icon");return this.$("tbody").append(c),this.collection?(d.addClass(this._find(a)?this.options.class_remove:this.options.class_add),c.on("click",function(){var c=b._find(a);d.removeClass(),c?(b.options.onremove(c),d.addClass(b.options.class_add)):(b.options.onadd(a),d.addClass(b.options.class_remove)),b._refresh()})):c.on("click",function(){b.options.onchange(a)}),c},_refresh:function(){var a=this.collection.where({file_mode:"ftp",enabled:!0});this.$select_all.removeClass(),this.$select_all.addClass(0==a.length?this.options.class_add:a.length==this.rows.length?this.options.class_remove:this.options.class_partial)},_find:function(a){var b=this.collection.findWhere({file_path:a.path,file_mode:"ftp",enabled:!0});return b&&b.get("id")},_templateRow:function(b){return'<tr class="upload-ftp-row"><td class="_has_collection" style="display: none;"><div class="icon"/></td><td class="ftp-name">'+b.path+'</td><td class="ftp-size">'+a.bytesToString(b.size)+'</td><td class="ftp-time">'+b.ctime+"</td></tr>"},_templateTable:function(){return'<span style="whitespace: nowrap; float: left;">Available files: </span><span style="whitespace: nowrap; float: right;"><span class="upload-icon fa fa-file-text-o"/><span class="upload-ftp-number"/> <span class="upload-icon fa fa-hdd-o"/><span class="upload-ftp-disk"/></span><table class="grid" style="float: left;"><thead><tr><th class="_has_collection" style="display: none;"><div class="upload-selectall"></th><th>Name</th><th>Size</th><th>Created</th></tr></thead><tbody/></table>'},_templateInfo:function(){return'<div class="upload-ftp-warning warningmessage">Your FTP directory does not contain any files.</div>'},_template:function(){return'<div class="upload-ftp"><div class="upload-ftp-wait fa fa-spinner fa-spin"/><div class="upload-ftp-help">This Galaxy server allows you to upload files via FTP. To upload some files, log in to the FTP server at <strong>'+this.options.ftp_upload_site+'</strong> using your Galaxy credentials (email address and password).</div><div class="upload-ftp-content"/><div>'}})});
|
||||
define(["utils/utils"],function(a){return Backbone.View.extend({initialize:function(b){var c=this;this.options=a.merge(b,{class_add:"upload-icon-button fa fa-square-o",class_remove:"upload-icon-button fa fa-check-square-o",class_partial:"upload-icon-button fa fa-minus-square-o",collection:null,onchange:function(){},onadd:function(){},onremove:function(){}}),this.collection=this.options.collection,this.setElement(this._template()),this.rows=[],a.get({url:Galaxy.root+"api/remote_files",success:function(a){c._fill(a)},error:function(){c._fill()}})},_fill:function(b){if(b&&b.length>0){this.$(".upload-ftp-content").html($(this._templateTable()));var c=0;for(index in b)this.rows.push(this._add(b[index])),c+=b[index].size;if(this.$(".upload-ftp-number").html(b.length+" files"),this.$(".upload-ftp-disk").html(a.bytesToString(c,!0)),this.collection){var d=this;this.$("._has_collection").show(),this.$select_all=this.$(".upload-selectall").addClass(this.options.class_add),this.$select_all.on("click",function(){var a=d.$select_all.hasClass(d.options.class_add);for(index in b){var c=b[index],e=d._find(c);(!e&&a||e&&!a)&&d.rows[index].trigger("click")}}),this._refresh()}}else this.$(".upload-ftp-content").html($(this._templateInfo()));this.$(".upload-ftp-wait").hide()},_add:function(a){var b=this,c=$(this._templateRow(a)),d=c.find(".icon");return this.$("tbody").append(c),this.collection?(d.addClass(this._find(a)?this.options.class_remove:this.options.class_add),c.on("click",function(){var c=b._find(a);d.removeClass(),c?(b.options.onremove(c),d.addClass(b.options.class_add)):(b.options.onadd(a),d.addClass(b.options.class_remove)),b._refresh()})):c.on("click",function(){b.options.onchange(a)}),c},_refresh:function(){var a=this.collection.where({file_mode:"ftp",enabled:!0});this.$select_all.removeClass(),this.$select_all.addClass(0==a.length?this.options.class_add:a.length==this.rows.length?this.options.class_remove:this.options.class_partial)},_find:function(a){var b=this.collection.findWhere({file_path:a.path,file_mode:"ftp",enabled:!0});return b&&b.get("id")},_templateRow:function(b){return'<tr class="upload-ftp-row"><td class="_has_collection" style="display: none;"><div class="icon"/></td><td class="ftp-name">'+_.escape(b.path)+'</td><td class="ftp-size">'+a.bytesToString(b.size)+'</td><td class="ftp-time">'+b.ctime+"</td></tr>"},_templateTable:function(){return'<span style="whitespace: nowrap; float: left;">Available files: </span><span style="whitespace: nowrap; float: right;"><span class="upload-icon fa fa-file-text-o"/><span class="upload-ftp-number"/> <span class="upload-icon fa fa-hdd-o"/><span class="upload-ftp-disk"/></span><table class="grid" style="float: left;"><thead><tr><th class="_has_collection" style="display: none;"><div class="upload-selectall"></th><th>Name</th><th>Size</th><th>Created</th></tr></thead><tbody/></table>'},_templateInfo:function(){return'<div class="upload-ftp-warning warningmessage">Your FTP directory does not contain any files.</div>'},_template:function(){return'<div class="upload-ftp"><div class="upload-ftp-wait fa fa-spinner fa-spin"/><div class="upload-ftp-help">This Galaxy server allows you to upload files via FTP. To upload some files, log in to the FTP server at <strong>'+this.options.ftp_upload_site+'</strong> using your Galaxy credentials (email address and password).</div><div class="upload-ftp-content"/><div>'}})});
|
||||
//# sourceMappingURL=../../../maps/mvc/upload/upload-ftp.js.map
|
||||
@@ -1,2 +1,2 @@
|
||||
define(["mvc/form/form-view","mvc/ui/ui-misc"],function(a,b){var c=Backbone.View.extend({initialize:function(){this.defs={information:{title:"Manage information",description:"Edit your email, addresses and custom parameters or change your username.",url:"api/users/"+Galaxy.user.id+"/information/inputs",icon:"fa-user"},password:{title:"Change password",description:"Allows you to change your login credentials.",icon:"fa-unlock-alt",url:"api/users/"+Galaxy.user.id+"/password/inputs",submit_title:"Save password"},communication:{title:"Change communication settings",description:"Enable or disable the communication feature to chat with other users.",url:"api/users/"+Galaxy.user.id+"/communication/inputs",icon:"fa-comments-o"},permissions:{title:"Set dataset permissions for new histories",description:"Grant others default access to newly created histories. Changes made here will only affect histories created after these settings have been stored.",url:"api/users/"+Galaxy.user.id+"/permissions/inputs",icon:"fa-users",submit_title:"Save permissions"},api_key:{title:"Manage API key",description:"Access your current API key or create a new one.",url:"api/users/"+Galaxy.user.id+"/api_key/inputs",icon:"fa-key",submit_title:"Create a new key",submit_icon:"fa-check"},toolbox_filters:{title:"Manage Toolbox filters",description:"Customize your Toolbox by displaying or omitting sets of Tools.",url:"api/users/"+Galaxy.user.id+"/toolbox_filters/inputs",icon:"fa-filter",submit_title:"Save filters"},openids:{title:"Manage OpenIDs",description:"Associate OpenIDs with your account.",icon:"fa-openid",onclick:function(){window.location.href=Galaxy.root+"user/openid_manage?cntrller=user&use_panels=True"}},logout:{title:"Sign out",description:"Click here to sign out of all sessions.",icon:"fa-sign-out",onclick:function(){Galaxy.modal.show({title:"Sign out",body:"Do you want to continue and sign out of all active sessions?",buttons:{Cancel:function(){Galaxy.modal.hide()},"Sign out":function(){window.location.href=Galaxy.root+"user/logout"}}})}}},this.message=new b.Message,this.setElement("<div/>"),this.render()},render:function(){var a=this,b=Galaxy.config;$.getJSON(Galaxy.root+"api/users/"+Galaxy.user.id,function(c){a.$preferences=$("<div/>").addClass("ui-panel").append(a.message.$el).append($("<h2/>").append("User preferences")).append($("<p/>").append("You are logged in as <strong>"+_.escape(c.email)+"</strong>.")).append(a.$table=$("<table/>").addClass("ui-panel-table")),b.use_remote_user||(a._link(a.defs.information),a._link(a.defs.password)),b.enable_communication_server&&a._link(a.defs.communication),a._link(a.defs.permissions),a._link(a.defs.api_key),b.has_user_tool_filters&&a._link(a.defs.toolbox_filters),b.enable_openid&&!b.use_remote_user&&a._link(a.defs.openids),a._link(a.defs.logout),a.$preferences.append(a._templateFooter(c)),a.$el.empty().append(a.$preferences)})},_link:function(c){var d=this,e=$(this._templateRow(c));this.$table.append(e),e.find("a").on("click",function(){c.url?$.ajax({url:Galaxy.root+c.url,type:"GET"}).done(function(e){var f=$.extend({},c,e),g=new a({title:f.title,icon:f.icon,inputs:f.inputs,operations:{submit:new b.ButtonIcon({tooltip:f.submit_tooltip,title:f.submit_title||"Save settings",icon:f.submit_icon||"fa-save",onclick:function(){d._submit(g,f)}}),back:new b.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to user preferences",title:"Preferences",onclick:function(){g.remove(),d.$preferences.show()}})}});d.$preferences.hide(),d.$el.append(g.$el)}).fail(function(){d.message.update({message:"Failed to load resource "+c.url+".",status:"danger"})}):c.onclick()})},_submit:function(a,b){var c=this;$.ajax({url:b.url,data:JSON.stringify(a.data.create()),type:"PUT",contentType:"application/json"}).done(function(b){var d=!1;a.data.matchModel(b,function(b,c){a.field_list[c].value(b.value),d=!0}),d?a.message.update({message:b.message,status:"success"}):(a.remove(),c.$preferences.show(),c.message.update({message:b.message,status:"success"}))}).fail(function(b){a.message.update({message:b.responseJSON.err_msg,status:"danger"})})},_templateRow:function(a){return'<tr><td><div class="ui-panel-icon fa '+a.icon+'"></td><td><a class="ui-panel-anchor" href="javascript:void(0)">'+a.title+'</a><div class="ui-form-info">'+a.description+"</div></td></tr>"},_templateFooter:function(a){return'<p class="ui-panel-footer">You are using <strong>'+a.nice_total_disk_usage+"</strong> of disk space in this Galaxy instance. "+(Galaxy.config.enable_quotas?"Your disk quota is: <strong>"+a.quota+"</strong>. ":"")+'Is your usage more than expected? See the <a href="https://wiki.galaxyproject.org/Learn/ManagingDatasets" target="_blank">documentation</a> for tips on how to find all of the data in your account.</p>'}});return{View:c}});
|
||||
define(["mvc/form/form-view","mvc/ui/ui-misc"],function(a,b){var c=Backbone.Model.extend({initialize:function(a){a=a||{},a.user_id=a.user_id||Galaxy.user.id,this.set({user_id:a.user_id,information:{title:"Manage information",description:"Edit your email, addresses and custom parameters or change your username.",url:"api/users/"+a.user_id+"/information/inputs",icon:"fa-user"},password:{title:"Change password",description:"Allows you to change your login credentials.",icon:"fa-unlock-alt",url:"api/users/"+a.user_id+"/password/inputs",submit_title:"Save password"},communication:{title:"Change communication settings",description:"Enable or disable the communication feature to chat with other users.",url:"api/users/"+a.user_id+"/communication/inputs",icon:"fa-comments-o"},permissions:{title:"Set dataset permissions for new histories",description:"Grant others default access to newly created histories. Changes made here will only affect histories created after these settings have been stored.",url:"api/users/"+a.user_id+"/permissions/inputs",icon:"fa-users",submit_title:"Save permissions"},api_key:{title:"Manage API key",description:"Access your current API key or create a new one.",url:"api/users/"+a.user_id+"/api_key/inputs",icon:"fa-key",submit_title:"Create a new key",submit_icon:"fa-check"},toolbox_filters:{title:"Manage Toolbox filters",description:"Customize your Toolbox by displaying or omitting sets of Tools.",url:"api/users/"+a.user_id+"/toolbox_filters/inputs",icon:"fa-filter",submit_title:"Save filters"},openids:{title:"Manage OpenIDs",description:"Associate OpenIDs with your account.",icon:"fa-openid",onclick:function(){window.location.href=Galaxy.root+"user/openid_manage?cntrller=user&use_panels=True"}},logout:{title:"Sign out",description:"Click here to sign out of all sessions.",icon:"fa-sign-out",onclick:function(){Galaxy.modal.show({title:"Sign out",body:"Do you want to continue and sign out of all active sessions?",buttons:{Cancel:function(){Galaxy.modal.hide()},"Sign out":function(){window.location.href=Galaxy.root+"user/logout"}}})}}})}}),d=Backbone.View.extend({initialize:function(){this.model=new c,this.message=new b.Message,this.setElement("<div/>"),this.render()},render:function(){var a=this,b=Galaxy.config;$.getJSON(Galaxy.root+"api/users/"+Galaxy.user.id,function(c){a.$preferences=$("<div/>").addClass("ui-panel").append(a.message.$el).append($("<h2/>").append("User preferences")).append($("<p/>").append("You are logged in as <strong>"+_.escape(c.email)+"</strong>.")).append(a.$table=$("<table/>").addClass("ui-panel-table")),b.use_remote_user||(a._addLink("information"),a._addLink("password")),b.enable_communication_server&&a._addLink("communication"),a._addLink("permissions"),a._addLink("api_key"),b.has_user_tool_filters&&a._addLink("toolbox_filters"),b.enable_openid&&!b.use_remote_user&&a._addLink("openids"),a._addLink("logout"),a.$preferences.append(a._templateFooter(c)),a.$el.empty().append(a.$preferences)})},_addLink:function(a){var b=this.model.get(a),c=$(this._templateLink(b)),d=c.find("a");b.onclick?d.on("click",function(){b.onclick()}):d.attr("href",Galaxy.root+"user/"+a),this.$table.append(c)},_templateLink:function(a){return'<tr><td><div class="ui-panel-icon fa '+a.icon+'"></td><td><a class="ui-panel-anchor" href="javascript:void(0)">'+a.title+'</a><div class="ui-form-info">'+a.description+"</div></td></tr>"},_templateFooter:function(a){return'<p class="ui-panel-footer">You are using <strong>'+a.nice_total_disk_usage+"</strong> of disk space in this Galaxy instance. "+(Galaxy.config.enable_quotas?"Your disk quota is: <strong>"+a.quota+"</strong>. ":"")+'Is your usage more than expected? See the <a href="https://wiki.galaxyproject.org/Learn/ManagingDatasets" target="_blank">documentation</a> for tips on how to find all of the data in your account.</p>'}}),e=Backbone.View.extend({initialize:function(a){this.model=new c(a),this.page=this.model.get(a.form_id),this.setElement("<div/>"),this.render()},render:function(){var c=this;$.ajax({url:Galaxy.root+this.page.url,type:"GET"}).done(function(d){var e=$.extend({},c.page,d),f=new a({title:e.title,icon:e.icon,inputs:e.inputs,operations:{submit:new b.ButtonIcon({tooltip:e.submit_tooltip,title:e.submit_title||"Save settings",icon:e.submit_icon||"fa-save",onclick:function(){c._submit(f,e)}})}});c.$el.empty().append(f.$el)}).fail(function(){c.$el.empty().append(new b.Message({message:"Failed to load resource "+c.page.url+".",status:"danger",persistent:!0}).$el)})},_submit:function(a,b){$.ajax({url:Galaxy.root+b.url,data:JSON.stringify(a.data.create()),type:"PUT",contentType:"application/json"}).done(function(b){var c=!1;a.data.matchModel(b,function(b,d){a.field_list[d].value(b.value),c=!0}),a.message.update({message:b.message,status:"success"})}).fail(function(b){window.console.log(b),a.message.update({message:b.responseJSON.err_msg,status:"danger"})})}});return{View:d,Forms:e}});
|
||||
//# sourceMappingURL=../../../maps/mvc/user/user-preferences.js.map
|
||||
@@ -0,0 +1,2 @@
|
||||
define(["utils/utils","mvc/form/form-view","mvc/tool/tool-form-base"],function(a,b,c){var d=Backbone.View.extend({initialize:function(a){this.form=new b(a)}}),e=Backbone.View.extend({initialize:function(b){var d=this;this.workflow=b.workflow,this.node=b.node,this.node?(this.post_job_actions=this.node.post_job_actions||{},a.deepeach(b.inputs,function(b){b.type&&(-1!=["data","data_collection"].indexOf(b.type)?(b.type="hidden",b.info="Data input '"+b.name+"' ("+a.textify(b.extensions)+")",b.value={__class__:"RuntimeValue"}):b.fixed||(b.collapsible_value={__class__:"RuntimeValue"},b.is_workflow=b.options&&0==b.options.length||-1!=["integer","float"].indexOf(b.type)))}),a.deepeach(b.inputs,function(a){"conditional"==a.type&&(a.test_param.collapsible_value=void 0)}),this._makeSections(b),this.form=new c(a.merge(b,{text_enable:"Set in Advance",text_disable:"Set at Runtime",narrow:!0,initial_errors:!0,sustain_version:!0,cls:"ui-portlet-narrow",postchange:function(b,c){var e=c.model.attributes,f={tool_id:e.id,tool_version:e.version,type:"tool",inputs:$.extend(!0,{},c.data.create())};Galaxy.emit.debug("tool-form-workflow::postchange()","Sending current state.",f),a.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:f,success:function(a){c.update(a.config_form),c.errors(a.config_form),d.node.update_field_data(a),Galaxy.emit.debug("tool-form-workflow::postchange()","Received new model.",a),b.resolve()},error:function(a){Galaxy.emit.debug("tool-form-workflow::postchange()","Refresh request failed.",a),b.reject()}})}}))):Galaxy.emit.debug("tool-form-workflow::initialize()","Node not found in workflow.")},_makeSections:function(a){var b=a.inputs,c=a.datatypes,d=this.node.output_terminals&&Object.keys(this.node.output_terminals)[0];if(d){b.push({name:"pja__"+d+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(this.post_job_actions["EmailAction"+d])),ignore:"false",help:"An email notification will be sent when the job has completed.",payload:{host:window.location.host}}),b.push({name:"pja__"+d+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(this.post_job_actions["DeleteIntermediatesAction"+d])),ignore:"false",help:"Upon completion of this step, delete non-starred outputs from completed workflow steps if they are no longer required as inputs."});for(var e in this.node.output_terminals)b.push(this._makeSection(e,c))}},_makeSection:function(a,b){function c(b,e){e=e||[],e.push(b);for(var f in b.inputs){var g=b.inputs[f],h=g.action;if(h){if(g.name="pja__"+a+"__"+g.action,g.pja_arg&&(g.name+="__"+g.pja_arg),g.payload)for(var i in g.payload){var j=g.payload[i];g.payload[g.name+"__"+i]=j,delete j}var k=d.post_job_actions[g.action+a];if(k){for(var l in e)e[l].expanded=!0;g.value=g.pja_arg?k.action_arguments&&k.action_arguments[g.pja_arg]||g.value:"true"}}g.inputs&&c(g,e.slice(0))}}var d=this,e=[],f=[];for(key in b)e.push({0:b[key],1:b[key]});for(key in this.node.input_terminals)f.push(this.node.input_terminals[key].name);e.sort(function(a,b){return a.label>b.label?1:a.label<b.label?-1:0}),e.unshift({0:"Sequences",1:"Sequences"}),e.unshift({0:"Roadmaps",1:"Roadmaps"}),e.unshift({0:"Leave unchanged",1:"__empty__"});var g={title:"Configure Output: '"+a+"'",type:"section",flat:!0,inputs:[{label:"Label",type:"text",value:(output=this.node.getWorkflowOutput(a))&&output.label||"",help:"This will provide a short name to describe the output - this must be unique across workflows.",onchange:function(b){d.workflow.attemptUpdateOutputLabel(d.node,a,b)}},{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/Variables">here</a> for more information. Valid inputs are: <strong>'+f.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:e,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{title:"Assign columns",type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};return c(g),g}});return{Default:d,Tool:e}});
|
||||
//# sourceMappingURL=../../../maps/mvc/workflow/workflow-forms.js.map
|
||||
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|
||||
define({"This history is empty":"ヒストリーは空です","No matching datasets found":"一致するデータセットが見つかりませんでした","Search datasets":"データセットを検索する","You are currently viewing a deleted history!":"消去したヒストリーをみています。","You are over your disk quota":"あなたはディスククォータを超えている",All:"一式",None:"なし","For all selected":"各項目を","Click to rename history":"ヒストリーの名前を変更するにはクリック","Operations on multiple datasets":"複数のデータセットに対する操作","Permanently delete datasets":"永久にデータセットを削除","This will permanently remove the data in your datasets. Are you sure?":"これは永久にあなたのデータセット内のデータを削除します。本当に？",Dataset:"データセット","This history is empty. Click 'Get Data' on the left tool menu to start":"ヒストリーは空です。解析をはじめるには、左パネルの 'データ取得' をクリック","No matching datasets found":"一致するデータセットが見つかりませんでした","You must be logged in to create histories":"ヒストリーを作成するためにはログインする必要があります","View data":"データを表示",Download:"ダウンロード","Download dataset":"データセットをダウンロード","View details":"細部を表示","This job is waiting to run":"ジョブは実行待ちです","This job is currently running":"ジョブは実行中です","An error occurred with this dataset":"このジョブの実行中に発生したエラー","No data":"データ無し","This dataset has been deleted and removed from disk":"このデータセットは、永続的にディスクから削除されました","This dataset has been deleted":"このデータセットは削除されました","This dataset has been hidden":"このデータセットは、非表示にされた",format:"フォーマット",database:"データベース","Edit attributes":"変数を編集する",Delete:"削除する","View or report this error":"このエラーを届け出る","Run this job again":"もう一度このジョブを実行する",Visualize:"可視化する","Undelete it":"復元する","Permanently remove it from disk":"永久にディスクから削除","Unhide it":"非表示解除する"});
|
||||
define({"This history is empty":"ヒストリーは空です","No matching datasets found":"一致するデータセットが見つかりませんでした","Search datasets":"データセットを検索する","You are currently viewing a deleted history!":"消去したヒストリーをみています。","You are over your disk quota":"あなたはディスククォータを超えている",All:"一式",None:"なし","For all selected":"各項目を","Click to rename history":"ヒストリーの名前を変更するにはクリック","Operations on multiple datasets":"複数のデータセットに対する操作","Permanently delete datasets":"永久にデータセットを削除","This will permanently remove the data in your datasets. Are you sure?":"これは永久にあなたのデータセット内のデータを削除します。本当に？",Dataset:"データセット","This history is empty. Click 'Get Data' on the left tool menu to start":"ヒストリーは空です。解析をはじめるには、左パネルの 'データ取得' をクリック","You must be logged in to create histories":"ヒストリーを作成するためにはログインする必要があります","View data":"データを表示",Download:"ダウンロード","Download dataset":"データセットをダウンロード","View details":"細部を表示","This job is waiting to run":"ジョブは実行待ちです","This job is currently running":"ジョブは実行中です","An error occurred with this dataset":"このジョブの実行中に発生したエラー","No data":"データ無し","This dataset has been deleted and removed from disk":"このデータセットは、永続的にディスクから削除されました","This dataset has been deleted":"このデータセットは削除されました","This dataset has been hidden":"このデータセットは、非表示にされた",format:"フォーマット",database:"データベース","Edit attributes":"変数を編集する",Delete:"削除する","View or report this error":"このエラーを届け出る","Run this job again":"もう一度このジョブを実行する",Visualize:"可視化する","Undelete it":"復元する","Permanently remove it from disk":"永久にディスクから削除","Unhide it":"非表示解除する"});
|
||||
//# sourceMappingURL=../../../maps/nls/ja/locale.js.map
|
||||
@@ -1,2 +1,2 @@
|
||||
define({root:{"This history is empty":!1,"No matching datasets found":!1,"An error occurred while getting updates from the server":!1,"Please contact a Galaxy administrator if the problem persists":!1,"Search datasets":!1,"You are currently viewing a deleted history!":!1,"You are over your disk quota":!1,"Tool execution is on hold until your disk usage drops below your allocated quota":!1,All:!1,None:!1,"For all selected":!1,"Edit history tags":!1,"Edit history Annotation":!1,"Click to rename history":!1,"Operations on multiple datasets":!1,"Hide datasets":!1,"Unhide datasets":!1,"Delete datasets":!1,"Undelete datasets":!1,"Permanently delete datasets":!1,"This will permanently remove the data in your datasets. Are you sure?":!1,Dataset:!1,Annotation:!1,"This history is empty. Click 'Get Data' on the left tool menu to start":!1,"No matching datasets found":!1,"You must be logged in to create histories":!1,"Unable to purge dataset":!1,"Cannot display datasets removed from disk":!1,"This dataset must finish uploading before it can be viewed":!1,"This dataset is not yet viewable":!1,"View data":!1,Download:!1,"Download dataset":!1,"Additional files":!1,"View details":!1,"This is a new dataset and not all of its data are available yet":!1,"You do not have permission to view this dataset":!1,"The job creating this dataset was cancelled before completion":!1,"This job is waiting to run":!1,"This dataset is currently uploading":!1,"Metadata is being auto-detected":!1,"This job is currently running":!1,'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':!1,"An error occurred with this dataset":!1,"No data":!1,"An error occurred setting the metadata for this dataset":!1,"There was an error getting the data for this dataset":!1,"This dataset has been deleted and removed from disk":!1,"This dataset has been deleted":!1,"This dataset has been hidden":!1,format:!1,database:!1,"Edit attributes":!1,"Cannot edit attributes of datasets removed from disk":!1,"Undelete dataset to edit attributes":!1,"This dataset must finish uploading before it can be edited":!1,"This dataset is not yet editable":!1,Delete:!1,"Dataset is already deleted":!1,"View or report this error":!1,"Run this job again":!1,Visualize:!1,"Visualize in":!1,"Undelete it":!1,"Permanently remove it from disk":!1,"Unhide it":!1,"You may be able to":!1,"set it manually or retry auto-detection":!1,"Edit dataset tags":!1,"Edit dataset annotation":!1,Tags:!1,Annotation:!1,"Edit annotation":!1},ja:!0,zh:!0});
|
||||
define({root:{"Analyze Data":!1,Workflow:!1,"Shared Data":!1,"Data Libraries":!1,Histories:!1,Workflows:!1,Visualizations:!1,Pages:!1,Visualization:!1,"New Track Browser":!1,"Saved Visualizations":!1,"Interactive Environments":!1,Admin:!1,Help:!1,Support:!1,Search:!1,"Mailing Lists":!1,Videos:!1,Wiki:!1,"How to Cite Galaxy":!1,"Interactive Tours":!1,User:!1,Login:!1,Register:!1,"Logged in as":!1,Preferences:!1,"Custom Builds":!1,Logout:!1,"Saved Histories":!1,"Saved Datasets":!1,"Saved Pages":!1,"History Lists":!1,"Histories Shared with Me":!1,"Current History":!1,"Create New":!1,"Copy History":!1,"Share or Publish":!1,"Show Structure":!1,"Extract Workflow":!1,"Delete Permanently":!1,"Dataset Actions":!1,"Copy Datasets":!1,"Dataset Security":!1,"Resume Paused Jobs":!1,"Collapse Expanded Datasets":!1,"Unhide Hidden Datasets":!1,"Delete Hidden Datasets":!1,"Purge Deleted Datasets":!1,Downloads:!1,"Export Tool Citations":!1,"Export History to File":!1,"Other Actions":!1,"Import from File":!1,Webhooks:!1,"This history is empty":!1,"No matching datasets found":!1,"An error occurred while getting updates from the server":!1,"Please contact a Galaxy administrator if the problem persists":!1,"search datasets":!1,"You are currently viewing a deleted history!":!1,"You are over your disk quota":!1,"Tool execution is on hold until your disk usage drops below your allocated quota":!1,All:!1,None:!1,"For all selected":!1,"Edit history tags":!1,"Edit history Annotation":!1,"Click to rename history":!1,"Operations on multiple datasets":!1,"Hide datasets":!1,"Unhide datasets":!1,"Delete datasets":!1,"Undelete datasets":!1,"Permanently delete datasets":!1,"This will permanently remove the data in your datasets. Are you sure?":!1,Dataset:!1,Annotation:!1,"This history is empty. Click 'Get Data' on the left tool menu to start":!1,"You must be logged in to create histories":!1,"Unable to purge dataset":!1,"Cannot display datasets removed from disk":!1,"This dataset must finish uploading before it can be viewed":!1,"This dataset is not yet viewable":!1,"View data":!1,Download:!1,"Download dataset":!1,"Additional files":!1,"View details":!1,"This is a new dataset and not all of its data are available yet":!1,"You do not have permission to view this dataset":!1,"The job creating this dataset was cancelled before completion":!1,"This job is waiting to run":!1,"This dataset is currently uploading":!1,"Metadata is being auto-detected":!1,"This job is currently running":!1,'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':!1,"An error occurred with this dataset":!1,"No data":!1,"An error occurred setting the metadata for this dataset":!1,"There was an error getting the data for this dataset":!1,"This dataset has been deleted and removed from disk":!1,"This dataset has been deleted":!1,"This dataset has been hidden":!1,format:!1,database:!1,"Edit attributes":!1,"Cannot edit attributes of datasets removed from disk":!1,"Undelete dataset to edit attributes":!1,"This dataset must finish uploading before it can be edited":!1,"This dataset is not yet editable":!1,Delete:!1,"Dataset is already deleted":!1,"View or report this error":!1,"Run this job again":!1,Visualize:!1,"Visualize in":!1,"Undelete it":!1,"Permanently remove it from disk":!1,"Unhide it":!1,"You may be able to":!1,"set it manually or retry auto-detection":!1,"Edit dataset tags":!1,"Edit dataset annotation":!1,Tags:!1,"Edit annotation":!1},ja:!0,fr:!0,zh:!0});
|
||||
//# sourceMappingURL=../../maps/nls/locale.js.map
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define({"This history is empty":"历史已空","No matching datasets found":"未找到匹配的数据集","Search datasets":"搜索数据集","You are currently viewing a deleted history!":"正在查看已删除的历史","You are over your disk quota":"您已超过磁盘配额",All:"皆",None:"一个也没有","For all selected":"为每个选定","Click to rename history":"单击要重命名的历史","Operations on multiple datasets":"编辑多个数据集","Permanently delete datasets":"永久删除数据集","This will permanently remove the data in your datasets. Are you sure?":"这将永久在你的数据集删除数据。你确定？",Dataset:"数据集","This history is empty. Click 'Get Data' on the left tool menu to start":"历史已空，请单击左边窗格中‘获取数据’","No matching datasets found":"没有发现","You must be logged in to create histories":"你必须登录后才能创建历史","View data":"数据",Download:"下载","Download dataset":"下载数据集","View details":"查看详情","This job is waiting to run":"等待运行的进程","This job is currently running":"正在运行的进程","An error occurred with this dataset":"进程运行时出错","No data":"没有数据","This dataset has been deleted":"此数据集已被删除","This dataset has been hidden":"此数据集已隐藏",format:"格式",database:"数据库","Edit attributes":"编辑属性",Delete:"删除","View or report this error":"报告错误","Run this job again":"重新运行",Visualize:"图形","Undelete it":"反删除","Permanently remove it from disk":"从磁盘中永久删除","Unhide it":"取消隐藏"});
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define({"This history is empty":"历史已空","No matching datasets found":"未找到匹配的数据集","Search datasets":"搜索数据集","You are currently viewing a deleted history!":"正在查看已删除的历史","You are over your disk quota":"您已超过磁盘配额",All:"皆",None:"一个也没有","For all selected":"为每个选定","Click to rename history":"单击要重命名的历史","Operations on multiple datasets":"编辑多个数据集","Permanently delete datasets":"永久删除数据集","This will permanently remove the data in your datasets. Are you sure?":"这将永久在你的数据集删除数据。你确定？",Dataset:"数据集","This history is empty. Click 'Get Data' on the left tool menu to start":"历史已空，请单击左边窗格中‘获取数据’","You must be logged in to create histories":"你必须登录后才能创建历史","View data":"数据",Download:"下载","Download dataset":"下载数据集","View details":"查看详情","This job is waiting to run":"等待运行的进程","This job is currently running":"正在运行的进程","An error occurred with this dataset":"进程运行时出错","No data":"没有数据","This dataset has been deleted":"此数据集已被删除","This dataset has been hidden":"此数据集已隐藏",format:"格式",database:"数据库","Edit attributes":"编辑属性",Delete:"删除","View or report this error":"报告错误","Run this job again":"重新运行",Visualize:"图形","Undelete it":"反删除","Permanently remove it from disk":"从磁盘中永久删除","Unhide it":"取消隐藏"});
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//# sourceMappingURL=../../../maps/nls/zh/locale.js.map
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Reference in New Issue
Block a user