From 4fa0ac86822e59742413d80cca770f754cd94da8 Mon Sep 17 00:00:00 2001
From: Kanwei Li <kanwei@gmail.com>
Date: Thu, 7 Jan 2010 17:52:08 -0500
Subject: [PATCH] Add bam_to_bai converter

---
 lib/galaxy/datatypes/converters/bam_to_bai.xml | 13 +++++++++++++
 1 file changed, 13 insertions(+)
 create mode 100644 lib/galaxy/datatypes/converters/bam_to_bai.xml

diff --git a/lib/galaxy/datatypes/converters/bam_to_bai.xml b/lib/galaxy/datatypes/converters/bam_to_bai.xml
new file mode 100644
index 00000000000..cea081db079
--- /dev/null
+++ b/lib/galaxy/datatypes/converters/bam_to_bai.xml
@@ -0,0 +1,13 @@
+<tool id="INDEXER_Bam_Bai_0" name="Bam to Bai">
+  <command>samtools index $input $output</command>
+  <inputs>
+    <page>
+      <param format="bam" name="input" type="data" label="Choose BAM"/>
+    </page>
+   </inputs>
+   <outputs>
+      <data format="bai" name="output"/>
+   </outputs>
+  <help>
+  </help>
+</tool>
\ No newline at end of file