From be10253b6947c8badfc71463d8331a1b53f5db9a Mon Sep 17 00:00:00 2001
From: John Chilton <jmchilton@gmail.com>
Date: Fri, 8 Apr 2016 10:28:09 -0400
Subject: [PATCH 1/2] Remove stray print statements.

Not Python 3 compat.
---
 lib/galaxy/tools/cwl/parser.py          | 1 -
 lib/galaxy/tools/cwl/runtime_actions.py | 1 -
 2 files changed, 2 deletions(-)

diff --git a/lib/galaxy/tools/cwl/parser.py b/lib/galaxy/tools/cwl/parser.py
index 75d3171bb77..3ebf32f5df1 100644
--- a/lib/galaxy/tools/cwl/parser.py
+++ b/lib/galaxy/tools/cwl/parser.py
@@ -341,7 +341,6 @@ class WorkflowProxy(object):
     def runnables(self):
         runnables = []
         for step in self._workflow.steps:
-            print dir(step)
             if "run" in step.tool:
                 runnables.append(step.tool["run"])
         return runnables
diff --git a/lib/galaxy/tools/cwl/runtime_actions.py b/lib/galaxy/tools/cwl/runtime_actions.py
index dc48549301d..7b596b4ca1b 100644
--- a/lib/galaxy/tools/cwl/runtime_actions.py
+++ b/lib/galaxy/tools/cwl/runtime_actions.py
@@ -44,7 +44,6 @@ def handle_outputs(job_directory=None):
                     secondary_file_path,
                     extra_target,
                 )
-                print extra_target
         else:
             with open(target_path, "w") as f:
                 f.write(json.dumps(output))

From 0414c2628aa08d2303f6a50eb2cd556802ed416b Mon Sep 17 00:00:00 2001
From: John Chilton <jmchilton@gmail.com>
Date: Fri, 8 Apr 2016 10:31:39 -0400
Subject: [PATCH 2/2] Expand PY3 linting to include another galaxy-lib module.

---
 .ci/py3_sources.txt | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.ci/py3_sources.txt b/.ci/py3_sources.txt
index 75546357121..69f7f69dc08 100644
--- a/.ci/py3_sources.txt
+++ b/.ci/py3_sources.txt
@@ -1,5 +1,6 @@
 lib/galaxy/util/
 lib/galaxy/jobs/runners/util/
+lib/galaxy/tools/cwl/
 lib/galaxy/tools/parser/
 lib/galaxy/tools/lint.py
 lib/galaxy/tools/lint_util.py