diff --git a/client/bower.json b/client/bower.json
index 6f45f82cb01..8ae45d46b4a 100644
--- a/client/bower.json
+++ b/client/bower.json
@@ -17,7 +17,6 @@
"d3": "~3",
"farbtastic": "~2.0.0-alpha.1",
"toastr": "~2.1.0",
- "jQTouch": "git://github.com/senchalabs/jQTouch#~1.0.0",
"bib2json": "git://github.com/galaxyproject/bib2json#galaxy",
"jquery-form": "~3.46.0",
"jquery-autocomplete": "git://github.com/dyve/jquery-autocomplete",
diff --git a/client/galaxy/scripts/libs/jquery/jqtouch.js b/client/galaxy/scripts/libs/jquery/jqtouch.js
deleted file mode 100644
index 0f5426d07c5..00000000000
--- a/client/galaxy/scripts/libs/jquery/jqtouch.js
+++ /dev/null
@@ -1,883 +0,0 @@
-(function() {
-
- $.jQTouch = function(options) {
- // Initialize internal jQT variables
- var $body,
- $head=$('head'),
- history=[],
- newPageCount=0,
- jQTSettings={},
- $currentPage='',
- orientation='portrait',
- touchSelectors=[],
- publicObj={},
- tapBuffer=100, // High click delay = ~350, quickest animation (slide) = 250
- extensions=$.jQTouch.prototype.extensions,
- extTapHandlers=$.jQTouch.prototype.tapHandlers,
- tapHandlers=[],
- animations=[],
- hairExtensions='',
- defaults = {
- addGlossToIcon: true,
- backSelector: '.back, .cancel, .goback',
- cacheGetRequests: true,
- debug: true,
- defaultAnimation: 'slideleft',
- fixedViewport: true,
- formSelector: 'form',
- fullScreen: true,
- fullScreenClass: 'fullscreen',
- icon: null,
- icon4: null, // available in iOS 4.2 and later
- preloadImages: false,
- starter: $(document).ready,
- startupScreen: null,
- statusBar: 'default', // other options: black-translucent, black
- submitSelector: '.submit',
- touchSelector: 'a, .touch',
- trackScrollPositions: true,
- updateHash: true,
- useAnimations: true,
- useFastTouch: true,
- useTouchScroll: true,
- animations: [ // highest to lowest priority
- {name:'cubeleft', selector:'.cubeleft, .cube', is3d: true},
- {name:'cuberight', selector:'.cuberight', is3d: true},
- {name:'dissolve', selector:'.dissolve'},
- {name:'fade', selector:'.fade'},
- {name:'flipleft', selector:'.flipleft, .flip', is3d: true},
- {name:'flipright', selector:'.flipright', is3d: true},
- {name:'pop', selector:'.pop', is3d: true},
- {name:'swapleft', selector:'.swapleft, .swap', is3d: true},
- {name:'swapright', selector:'.swapright', is3d: true},
- {name:'slidedown', selector:'.slidedown'},
- {name:'slideright', selector:'.slideright'},
- {name:'slideup', selector:'.slideup'},
- {name:'slideleft', selector:'.slideleft, .slide, #jqt > * > ul li a'}
- ]
- }; // end defaults
-
- function warn(message) {
- if (window.console !== undefined && jQTSettings.debug === true) {
- console.warn(message);
- }
- }
-
- function addAnimation(animation) {
- if (typeof(animation.selector) === 'string' && typeof(animation.name) === 'string') {
- animations.push(animation);
- }
- }
-
- function addTapHandler(tapHandler) {
- if (typeof(tapHandler.name) === 'string' && typeof(tapHandler.isSupported) === 'function' && typeof(tapHandler.fn) === 'function') {
- tapHandlers.push(tapHandler);
- }
- }
-
- function addPageToHistory(page, animation) {
- history.unshift({
- page: page,
- animation: animation,
- hash: '#' + page.attr('id'),
- id: page.attr('id')
- });
- }
-
- // Unfortunately, we can not assume the 'tap' event
- // is being used for links, forms, etc.
- function clickHandler(e) {
- // Figure out whether to prevent default
- var $el = $(e.target);
-
- // Find the nearest tappable ancestor
- if (!$el.is(touchSelectors.join(', '))) {
- $el = $(e.target).closest(touchSelectors.join(', '));
- }
-
- // Prevent default if we found an internal link
- // (relative or absolute)
- if ($el && $el.attr('href') && !$el.isExternalLink()) {
- warn('Need to prevent default click behavior.');
- e.preventDefault();
- } else {
- warn('No need to prevent default click behavior.');
- }
-
- // Trigger a tap event if touchstart is not on the job
- if ($.support.touch) {
- warn('Not converting click to a tap event because touch handler is on the job.');
- } else {
- warn('Converting click event to a tap event because touch handlers are not present or off.');
- $(e.target).trigger('tap', e);
- }
- }
-
- function doNavigation(fromPage, toPage, animation, goingBack) {
-
- goingBack = goingBack ? goingBack : false;
-
- // Error check for target page
- if (toPage === undefined || toPage.length === 0) {
- $.fn.unselect();
- warn('Target element is missing.');
- return false;
- }
-
- // Error check for fromPage === toPage
- if (toPage.hasClass('current')) {
- $.fn.unselect();
- warn('You are already on the page you are trying to navigate to.');
- return false;
- }
-
- // Collapse the keyboard
- $(':focus').trigger('blur');
-
- fromPage.trigger('pageAnimationStart', { direction: 'out', back: goingBack });
- toPage.trigger('pageAnimationStart', { direction: 'in', back: goingBack });
-
- if ($.support.animationEvents && animation && jQTSettings.useAnimations) {
- // Fail over to 2d animation if need be
- if (!$.support.transform3d && animation.is3d) {
- warn('Did not detect support for 3d animations, falling back to ' + jQTSettings.defaultAnimation + '.');
- animation.name = jQTSettings.defaultAnimation;
- }
-
- // Reverse animation if need be
- var finalAnimationName = animation.name,
- is3d = animation.is3d ? 'animating3d' : '';
-
- if (goingBack) {
- finalAnimationName = finalAnimationName.replace(/left|right|up|down|in|out/, reverseAnimation);
- }
-
- warn('finalAnimationName is ' + finalAnimationName + '.');
-
- // Bind internal 'cleanup' callback
- fromPage.bind('webkitAnimationEnd', navigationEndHandler);
-
- // Trigger animations
- $body.addClass('animating ' + is3d);
-
- var lastScroll = window.pageYOffset;
-
- // Position the incoming page so toolbar is at top of
- // viewport regardless of scroll position on from page
- if (jQTSettings.trackScrollPositions === true) {
- toPage.css('top', window.pageYOffset - (toPage.data('lastScroll') || 0));
- }
-
- toPage.addClass(finalAnimationName + ' in current');
- fromPage.removeClass('current').addClass(finalAnimationName + ' out inmotion');
-
- if (jQTSettings.trackScrollPositions === true) {
- fromPage.data('lastScroll', lastScroll);
- $('.scroll', fromPage).each(function() {
- $(this).data('lastScroll', this.scrollTop);
- });
- }
- } else {
- toPage.addClass('current in');
- fromPage.removeClass('current');
- navigationEndHandler();
- }
-
- // Housekeeping
- $currentPage = toPage;
- if (goingBack) {
- history.shift();
- } else {
- addPageToHistory($currentPage, animation);
- }
- setHash($currentPage.attr('id'));
-
- // Private navigationEnd callback
- function navigationEndHandler(event) {
- var bufferTime = tapBuffer;
-
- if ($.support.animationEvents && animation && jQTSettings.useAnimations) {
- fromPage.unbind('webkitAnimationEnd', navigationEndHandler);
- fromPage.removeClass(finalAnimationName + ' out inmotion');
- if (finalAnimationName) {
- toPage.removeClass(finalAnimationName);
- }
- $body.removeClass('animating animating3d');
- if (jQTSettings.trackScrollPositions === true) {
- toPage.css('top', -toPage.data('lastScroll'));
-
- // Have to make sure the scroll/style resets
- // are outside the flow of this function.
- setTimeout(function() {
- toPage.css('top', 0);
- window.scroll(0, toPage.data('lastScroll'));
- $('.scroll', toPage).each(function() {
- this.scrollTop = - $(this).data('lastScroll');
- });
- }, 0);
- }
- } else {
- fromPage.removeClass(finalAnimationName + ' out inmotion');
- if (finalAnimationName) {
- toPage.removeClass(finalAnimationName);
- }
- bufferTime += 260;
- }
-
- // 'in' class is intentionally delayed,
- // as it is our ghost click hack
- setTimeout(function() {
- toPage.removeClass('in');
- window.scroll(0,0);
- }, bufferTime);
-
- fromPage.unselect();
-
- // Trigger custom events
- toPage.trigger('pageAnimationEnd', {
- direction:'in',
- animation: animation,
- back: goingBack
- });
- fromPage.trigger('pageAnimationEnd', {
- direction:'out',
- animation: animation,
- back: goingBack
- });
- }
-
- return true;
- }
-
- function reverseAnimation(animation) {
- var opposites={
- 'up' : 'down',
- 'down' : 'up',
- 'left' : 'right',
- 'right' : 'left',
- 'in' : 'out',
- 'out' : 'in'
- };
-
- return opposites[animation] || animation;
- }
-
- function getOrientation() {
- return orientation;
- }
-
- function goBack() {
- // Error checking
- if (history.length < 1) {
- warn('History is empty.');
- }
-
- if (history.length === 1) {
- warn('You are on the first panel.');
- window.history.go(-1);
- }
-
- var from = history[0],
- to = history[1];
-
- if (doNavigation(from.page, to.page, from.animation, true)) {
- return publicObj;
- } else {
- warn('Could not go back.');
- return false;
- }
- }
-
- function goTo(toPage, animation) {
- var fromPage = history[0].page;
-
- if (typeof animation === 'string') {
- for (var i=0, max=animations.length; i < max; i++) {
- if (animations[i].name === animation) {
- animation = animations[i];
- break;
- }
- }
- }
-
- if (typeof toPage === 'string') {
- var nextPage = $(toPage);
-
- if (nextPage.length < 1) {
- showPageByHref(toPage, {
- animation: animation
- });
- return;
- } else {
- toPage = nextPage;
- }
- }
- if (doNavigation(fromPage, toPage, animation)) {
- return publicObj;
- } else {
- warn('Could not animate pages.');
- return false;
- }
- }
-
- function hashChangeHandler(e) {
- if (location.hash === history[0].hash) {
- warn('We are on the right panel.');
- return true;
- } else if (location.hash === '') {
- goBack();
- return true;
- } else if (history[1] && location.hash === history[1].hash) {
- goBack();
- return true;
- } else {
- // Lastly, just try going to the ID...
- warn('Could not find ID in history, just forwarding to DOM element.');
- goTo($(location.hash), jQTSettings.defaultAnimation);
- }
- }
-
- function initHairExtensions(options) {
- // Preload images
- if (jQTSettings.preloadImages) {
- for (var i = jQTSettings.preloadImages.length - 1; i >= 0; i--) {
- (new Image()).src = jQTSettings.preloadImages[i];
- }
- }
-
- // Set appropriate icon
- // (retina display available in iOS 4.2 and later.)
- var precomposed = (jQTSettings.addGlossToIcon) ? '' : '-precomposed';
- if (jQTSettings.icon) {
- hairExtensions += '';
- }
- if (jQTSettings.icon4) {
- hairExtensions += '';
- }
- // Set startup screen
- if (jQTSettings.startupScreen) {
- hairExtensions += '';
- }
-
- // Set viewport
- if (jQTSettings.fixedViewport) {
- hairExtensions += '';
- }
-
- // Set full-screen
- if (jQTSettings.fullScreen) {
- hairExtensions += '';
- if (jQTSettings.statusBar) {
- hairExtensions += '';
- }
- }
-
- // Attach hair extensions
- if (hairExtensions) {
- $head.prepend(hairExtensions);
- }
- }
-
- function initFXExtensions() {
- // Define public jQuery functions
- $.fn.isExternalLink = function() {
- var $el = $(this);
- return ($el.attr('target') === '_blank' || $el.attr('rel') === 'external' || $el.is('a[href^="http://maps.google.com"], a[href^="mailto:"], a[href^="tel:"], a[href^="javascript:"], a[href*="youtube.com/v"], a[href*="youtube.com/watch"]'));
- };
- $.fn.makeActive = function() {
- return $(this).addClass('active');
- };
- $.fn.unselect = function(obj) {
- if (obj) {
- obj.removeClass('active');
- } else {
- $('.active').removeClass('active');
- }
- };
- }
-
- function getAnimation(el) {
- var animation;
-
- for (var i=0, max=animations.length; i < max; i++) {
- if (el.is(animations[i].selector)) {
- animation = animations[i];
- break;
- }
- }
-
- if (!animation) {
- warn('Animation could not be found. Using ' + jQTSettings.defaultAnimation + '.');
- animation = jQTSettings.defaultAnimation;
- }
- return animation;
- }
-
- function insertPages(nodes, animation) {
-
- var targetPage = null;
-
- // Call dom.createElement element directly
- // instead of relying on $(nodes), to work around:
- // https://github.com/madrobby/zepto/issues/312
- var div = document.createElement('div');
- div.innerHTML = nodes;
-
- $(div).children().each(function(index, node) {
- var $node = $(this);
- if (!$node.attr('id')) {
- $node.attr('id', 'page-' + (++newPageCount));
- }
-
- // Remove any existing instance
- $('#' + $node.attr('id')).remove();
-
- $body.append($node);
- $body.trigger('pageInserted', {page: $node});
-
- if ($node.hasClass('current') || !targetPage) {
- targetPage = $node;
- }
- });
- if (targetPage !== null) {
- goTo(targetPage, animation);
- return targetPage;
- } else {
- return false;
- }
- }
-
- function orientationChangeHandler() {
- scrollTo(0,0);
- orientation = Math.abs(window.orientation) === 90 ? 'landscape' : 'portrait';
- $body.removeClass('portrait landscape').addClass(orientation).trigger('turn', {orientation: orientation});
- }
-
- function setHash(hash) {
- // Sanitize
- if (jQTSettings.updateHash) {
- location.hash = '#' + hash.replace(/^#/, '');
- }
- }
-
- // Document ready stuff
- function start() {
- // Store some properties in a support object
- if (!$.support) $.support = {};
- $.support.animationEvents = (typeof window.WebKitAnimationEvent !== 'undefined');
- $.support.touch = (typeof window.TouchEvent !== 'undefined') && (window.navigator.userAgent.indexOf('Mobile') > -1) && jQTSettings.useFastTouch;
- $.support.transform3d = supportForTransform3d();
- $.support.ios5 = supportIOS5();
-
- if (!$.support.touch) {
- warn('This device does not support touch interaction, or it has been deactivated by the developer. Some features might be unavailable.');
- }
- if (!$.support.transform3d) {
- warn('This device does not support 3d animation. 2d animations will be used instead.');
- }
-
- // Add extensions
- for (var i=0, max=extensions.length; i < max; i++) {
- var fn = extensions[i];
- if ($.isFunction(fn)) {
- $.extend(publicObj, fn(publicObj));
- }
- }
-
- // Add extensions tapHandlers
- for (var j=0, maxTapHandlers=extTapHandlers.length; j < maxTapHandlers; j++) {
- addTapHandler(extTapHandlers[j]);
- }
- // Add default tapHandlers
- addDefaultTapHandlers();
-
- // Add animations
- for (var k=0, maxAnimations=defaults.animations.length; k < maxAnimations; k++) {
- var animation = defaults.animations[k];
- if (jQTSettings[animation.name + 'Selector'] !== undefined) {
- animation.selector = jQTSettings[animation.name + 'Selector'];
- }
- addAnimation(animation);
- }
-
- // Create an array of stuff that needs touch event handling
- touchSelectors.push(jQTSettings.touchSelector);
- touchSelectors.push(jQTSettings.backSelector);
- touchSelectors.push(jQTSettings.submitSelector);
- $(touchSelectors.join(', ')).css('-webkit-touch-callout', 'none');
-
- // Make sure we have a jqt element
- $body = $('#jqt');
- var anatomyLessons = [];
-
- if ($body.length === 0) {
- warn('Could not find an element with the id "jqt", so the body id has been set to "jqt". If you are having any problems, wrapping your panels in a div with the id "jqt" might help.');
- $body = $(document.body).attr('id', 'jqt');
- }
-
- // Add some specific css if need be
- if ($.support.transform3d) {
- anatomyLessons.push('supports3d');
- }
-
- if (jQTSettings.useTouchScroll) {
- if ($.support.ios5) {
- anatomyLessons.push('touchscroll');
- } else {
- anatomyLessons.push('autoscroll');
- }
- }
-
- if (jQTSettings.fullScreenClass && window.navigator.standalone === true) {
- anatomyLessons.push(jQTSettings.fullScreenClass, jQTSettings.statusBar);
- }
-
- // Bind events
- $body
- .addClass(anatomyLessons.join(' '))
- .bind('click', clickHandler)
- .bind('orientationchange', orientationChangeHandler)
- .bind('submit', submitHandler)
- .bind('tap', tapHandler)
- .bind($.support.touch ? 'touchstart' : 'mousedown', touchStartHandler)
- .trigger('orientationchange');
-
- $(window).bind('hashchange', hashChangeHandler);
-
- var startHash = location.hash;
-
- // Determine what the initial view should be
- if ($('#jqt > .current').length === 0) {
- $currentPage = $('#jqt > *:first-child').addClass('current');
- } else {
- $currentPage = $('#jqt > .current');
- }
-
- setHash($currentPage.attr('id'));
- addPageToHistory($currentPage);
-
- if ($(startHash).length === 1) {
- goTo(startHash);
- }
- }
-
- function showPageByHref(href, options) {
-
- var defaults = {
- data: null,
- method: 'GET',
- animation: null,
- callback: null,
- $referrer: null
- };
-
- var settings = $.extend({}, defaults, options);
-
- if (href !== '#') {
- $.ajax({
- url: href,
- data: settings.data,
- type: settings.method,
- success: function (data) {
- var firstPage = insertPages(data, settings.animation);
- if (firstPage) {
- if (settings.method === 'GET' && jQTSettings.cacheGetRequests === true && settings.$referrer) {
- settings.$referrer.attr('href', '#' + firstPage.attr('id'));
- }
- if (settings.callback) {
- settings.callback(true);
- }
- }
- },
- error: function (data) {
- if (settings.$referrer) {
- settings.$referrer.unselect();
- }
- if (settings.callback) {
- settings.callback(false);
- }
- }
- });
- } else if (settings.$referrer) {
- settings.$referrer.unselect();
- }
- }
-
- function submitHandler(e, callback) {
-
- $(':focus').trigger('blur');
-
- e.preventDefault();
-
- var $form = (typeof(e)==='string') ? $(e).eq(0) : (e.target ? $(e.target) : $(e));
-
- if ($form.length && $form.is(jQTSettings.formSelector) && $form.attr('action')) {
- showPageByHref($form.attr('action'), {
- data: $form.serialize(),
- method: $form.attr('method') || 'POST',
- animation: getAnimation($form),
- callback: callback
- });
- return false;
- }
- return true;
- }
-
- function submitParentForm($el) {
-
- var $form = $el.closest('form');
- if ($form.length === 0) {
- warn('No parent form found.');
- } else {
- warn('About to submit parent form.');
- $form.trigger('submit');
- return false;
- }
- return true;
- }
-
- function supportForTransform3d() {
-
- var head, body, style, div, result;
-
- head = document.getElementsByTagName('head')[0];
- body = document.body;
-
- style = document.createElement('style');
- style.textContent = '@media (transform-3d),(-o-transform-3d),(-moz-transform-3d),(-webkit-transform-3d){#jqt-3dtest{height:3px}}';
-
- div = document.createElement('div');
- div.id = 'jqt-3dtest';
-
- // Add to the page
- head.appendChild(style);
- body.appendChild(div);
-
- // Check the result
- result = div.offsetHeight === 3;
-
- // Clean up
- style.parentNode.removeChild(style);
- div.parentNode.removeChild(div);
-
- // Pass back result
- warn('Support for 3d transforms: ' + result + '.');
- return result;
- }
-
- function supportIOS5() {
- var support = false;
- var REGEX_IOS_VERSION = /OS (\d+)(_\d+)* like Mac OS X/i;
-
- var agentString = window.navigator.userAgent;
- if (REGEX_IOS_VERSION.test(agentString)) {
- support = (REGEX_IOS_VERSION.exec(agentString)[1] >= 5);
- }
- return support;
- }
-
- function touchStartHandler(e) {
-
- var $el = $(e.target),
- selectors = touchSelectors.join(', ');
-
- // Find the nearest tappable ancestor
- if (!$el.is(selectors)) {
- $el = $el.closest(selectors);
- }
-
- // Make sure we have a tappable element
- if ($el.length && $el.attr('href')) {
- $el.addClass('active');
- }
-
- // Remove our active class if we move
- $el.on($.support.touch ? 'touchmove' : 'mousemove', function() {
- $el.removeClass('active');
- });
-
- $el.on('touchend', function() {
- $el.unbind('touchmove mousemove');
- });
- }
-
- function tapHandler(e) {
-
- if (e.isDefaultPrevented()) {
- return true;
- }
-
- // Grab the target element
- var $el = $(e.target);
-
- // Find the nearest tappable ancestor
- if (!$el.is(touchSelectors.join(', '))) {
- $el = $el.closest(touchSelectors.join(', '));
- }
-
- // Make sure we have a tappable element
- if (!$el.length || !$el.attr('href')) {
- warn('Could not find a link related to tapped element.');
- return true;
- }
-
- // Init some vars
- var target = $el.attr('target'),
- hash = $el.prop('hash'),
- href = $el.attr('href');
-
- var params = {
- e: e,
- $el: $el,
- target: target,
- hash: hash,
- href: href,
- jQTSettings: jQTSettings
- };
-
- // Loop thru all handlers
- for (var i=0, len=tapHandlers.length; i * {
- display: none;
- position: absolute;
- margin: 0;
- padding: 0;
- left: 0;
- width: 100%;
- min-height: 480px;
- -webkit-transform: translate(0px,0px);
- background-color: #fff;
-}
-
-body[orient="landscape"] > * {
- min-height: 320px;
-}
-
-body > *[selected="true"], body > *[selected="selected"] {
- display: block;
-}
-
-.edgetoedge a[selected=true], .edgetoedge a:active, .panel a[selected=true], .panel a:active {
- background-color: rgb(170,170,238) !important;
-}
-
-a[selected="progress"] {
- background-color: rgb(170,170,238) !important;
- background-image: url(img/loading.gif) !important;
- background-repeat: no-repeat !important;
- background-position: right center !important;
-}
-
-/* @group Toolbar */
-.toolbar {
- -webkit-box-sizing: border-box;
- padding: 10px;
- /* height: 60px; */
- /* padding-top: 28px; */
- /* background: #000 url(img/toolbar.gif) bottom left repeat-x; */
- height: 42px;
- background: rgb(44,49,67);
- position: relative;
-}
-
-.toolbar > h1 {
- position: absolute;
- overflow: hidden;
- left: 50%;
- margin: 1px 0 0 -75px;
- height: 45px;
- font-size: 20px;
- width: 150px;
- font-weight: bold;
- /*text-shadow: rgba(0, 0, 0, .75) -1px -1px 0;*/
- text-align: center;
- text-overflow: ellipsis;
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-.toggle {
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-.panel p a {
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-#about {
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