diff --git a/lib/galaxy/datatypes/anvio.py b/lib/galaxy/datatypes/anvio.py index 51c8f9eecd7..a4fb4267977 100644 --- a/lib/galaxy/datatypes/anvio.py +++ b/lib/galaxy/datatypes/anvio.py @@ -5,7 +5,6 @@ https://github.com/merenlab/anvio import glob import logging import os -import sys from typing import Optional from galaxy.datatypes.metadata import MetadataElement @@ -168,9 +167,3 @@ class AnvioSamplesDB(AnvioDB): _anvio_basename = "SAMPLES.db" MetadataElement(name="anvio_basename", default=_anvio_basename, desc="Basename", readonly=True) file_ext = "anvio_samples_db" - - -if __name__ == "__main__": - import doctest - - doctest.testmod(sys.modules[__name__]) diff --git a/lib/galaxy/datatypes/assembly.py b/lib/galaxy/datatypes/assembly.py index c3855350ecf..83ce0befae2 100644 --- a/lib/galaxy/datatypes/assembly.py +++ b/lib/galaxy/datatypes/assembly.py @@ -7,7 +7,6 @@ for velvet assembler tool in galaxy import logging import os import re -import sys from galaxy.datatypes import ( data, @@ -242,9 +241,3 @@ class Velvet(Html): def set_meta(self, dataset, **kwd): Html.set_meta(self, dataset, **kwd) self.regenerate_primary_file(dataset) - - -if __name__ == "__main__": - import doctest - - doctest.testmod(sys.modules[__name__]) diff --git a/lib/galaxy/datatypes/binary.py b/lib/galaxy/datatypes/binary.py index ca65077dd31..10d99f71ef0 100644 --- a/lib/galaxy/datatypes/binary.py +++ b/lib/galaxy/datatypes/binary.py @@ -9,7 +9,6 @@ import os import shutil import struct import subprocess -import sys import tarfile import tempfile import zipfile @@ -4196,9 +4195,3 @@ class HexrdEtaOmeNpz(Npz): return dataset.peek except Exception: return "Binary Numpy npz file (%s)" % (nice_size(dataset.get_size())) - - -if __name__ == "__main__": - import doctest - - doctest.testmod(sys.modules[__name__]) diff --git a/lib/galaxy/datatypes/genetics.py b/lib/galaxy/datatypes/genetics.py index 1c10d06ab77..17c11eef8a4 100644 --- a/lib/galaxy/datatypes/genetics.py +++ b/lib/galaxy/datatypes/genetics.py @@ -1236,9 +1236,3 @@ class AllegroLOD(LinkageStudies): return False return True - - -if __name__ == "__main__": - import doctest - - doctest.testmod(sys.modules[__name__]) diff --git a/lib/galaxy/datatypes/interval.py b/lib/galaxy/datatypes/interval.py index e0240ddf300..32585c8af5f 100644 --- a/lib/galaxy/datatypes/interval.py +++ b/lib/galaxy/datatypes/interval.py @@ -1727,9 +1727,3 @@ class ScIdx(Tabular): if count >= 1: return True return False - - -if __name__ == "__main__": - import doctest - - doctest.testmod(sys.modules[__name__]) diff --git a/lib/galaxy/datatypes/mothur.py b/lib/galaxy/datatypes/mothur.py index f1ac6c353e6..14a0f0b8f0b 100644 --- a/lib/galaxy/datatypes/mothur.py +++ b/lib/galaxy/datatypes/mothur.py @@ -3,7 +3,6 @@ Mothur Metagenomics Datatypes """ import logging import re -import sys from galaxy.datatypes.data import Text from galaxy.datatypes.metadata import MetadataElement @@ -1064,9 +1063,3 @@ class SffFlow(Tabular): except Exception as exc: out = f"Can't create peek: {unicodify(exc)}" return out - - -if __name__ == "__main__": - import doctest - - doctest.testmod(sys.modules[__name__]) diff --git a/lib/galaxy/datatypes/neo4j.py b/lib/galaxy/datatypes/neo4j.py index 31a35930c3b..041021a2972 100644 --- a/lib/galaxy/datatypes/neo4j.py +++ b/lib/galaxy/datatypes/neo4j.py @@ -2,7 +2,6 @@ Neo4j Composite Dataset """ import logging -import sys from galaxy.datatypes.data import Data from galaxy.datatypes.images import Html @@ -132,9 +131,3 @@ class Neo4jDBzip(Neo4j, Data): self.add_composite_file( "%s.zip", description="neostore zip", substitute_name_with_metadata="reference_name", is_binary=True ) - - -if __name__ == "__main__": - import doctest - - doctest.testmod(sys.modules[__name__]) diff --git a/lib/galaxy/datatypes/sniff.py b/lib/galaxy/datatypes/sniff.py index fb7ebeb25cc..5839b5a2927 100644 --- a/lib/galaxy/datatypes/sniff.py +++ b/lib/galaxy/datatypes/sniff.py @@ -10,7 +10,6 @@ import os import re import shutil import struct -import sys import tempfile import zipfile from functools import partial @@ -942,9 +941,3 @@ DECOMPRESSION_FUNCTIONS: Dict[str, Decompress] = dict(gzip=gzip.GzipFile, bz2=bz class InappropriateDatasetContentError(Exception): pass - - -if __name__ == "__main__": - import doctest - - doctest.testmod(sys.modules[__name__]) diff --git a/lib/galaxy/tool_util/deps/mulled/get_tests.py b/lib/galaxy/tool_util/deps/mulled/get_tests.py index 02df99661fe..895995264a7 100644 --- a/lib/galaxy/tool_util/deps/mulled/get_tests.py +++ b/lib/galaxy/tool_util/deps/mulled/get_tests.py @@ -5,7 +5,6 @@ searches for tests for packages in the bioconda-recipes repo and on Anaconda, lo A shallow search (default for singularity and conda generation scripts) just checks once on Anaconda for the specified version. """ -# import doctest import json import logging import tarfile diff --git a/lib/galaxy/util/__init__.py b/lib/galaxy/util/__init__.py index 895c5bd0769..9844fed3404 100644 --- a/lib/galaxy/util/__init__.py +++ b/lib/galaxy/util/__init__.py @@ -1852,9 +1852,3 @@ class StructuredExecutionTimer: @property def elapsed(self): return time.time() - self.begin - - -if __name__ == "__main__": - import doctest - - doctest.testmod(sys.modules[__name__], verbose=False)