From 481f69fb6f87a76ac3c51872990a97575b6b40cc Mon Sep 17 00:00:00 2001
From: Daniel Blankenberg <dan@bx.psu.edu>
Date: Mon, 10 Aug 2009 14:00:47 -0400
Subject: [PATCH] Have update_ucsc.sh.sample add 'chrom' dir to
 tool-data/shared/ucsc as needed. This empty directory was lost from the
 repository in the svn to hg conversion.

---
 cron/updateucsc.sh.sample | 16 ++++++++++++++--
 1 file changed, 14 insertions(+), 2 deletions(-)

diff --git a/cron/updateucsc.sh.sample b/cron/updateucsc.sh.sample
index 31630248517..6e7e2fc0f7f 100644
--- a/cron/updateucsc.sh.sample
+++ b/cron/updateucsc.sh.sample
@@ -9,8 +9,20 @@ GALAXY=/galaxy/path
 export PYTHONPATH=${GALAXY}/lib
 
 # setup directories
-mkdir ${GALAXY}/tool-data/shared/ucsc/new
-mkdir ${GALAXY}/tool-data/shared/ucsc/chrom/new
+echo "Creating required directories."
+DIRS="
+${GALAXY}/tool-data/shared/ucsc/new
+${GALAXY}/tool-data/shared/ucsc/chrom
+${GALAXY}/tool-data/shared/ucsc/chrom/new
+"
+for dir in $DIRS; do
+    if [ ! -d $dir ]; then
+        echo "Creating $dir"
+        mkdir $dir
+    else
+        echo "$dir already exists, continuing."
+    fi
+done
 
 date
 echo "Updating UCSC shared data tables."