From b3782e85736f7eefc19cde6c0344c467636ae901 Mon Sep 17 00:00:00 2001 From: John Chilton Date: Thu, 2 Jul 2020 11:04:00 -0400 Subject: [PATCH 1/4] Fix typo. --- lib/galaxy_test/base/instrument.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/galaxy_test/base/instrument.py b/lib/galaxy_test/base/instrument.py index e10d7e8dd9a..e185a9bf333 100644 --- a/lib/galaxy_test/base/instrument.py +++ b/lib/galaxy_test/base/instrument.py @@ -1,6 +1,6 @@ """ Utilities to help instrument tool tests. -Including structed data nose plugin that allows storing arbitrary structured +Including structured data nose plugin that allows storing arbitrary structured data on a per test case basis - used by tool test to store inputs, output problems, job tests, etc... but could easily by used by other test types in a different way. From 6866e7983a3034aae40e3e8e1c9dc1325056a6ae Mon Sep 17 00:00:00 2001 From: John Chilton Date: Thu, 2 Jul 2020 11:13:32 -0400 Subject: [PATCH 2/4] Fixes for package dependency lists. --- packages/app/requirements.txt | 2 ++ packages/test_driver/requirements.txt | 1 + 2 files changed, 3 insertions(+) diff --git a/packages/app/requirements.txt b/packages/app/requirements.txt index da8a0e43f0c..e51c3b80fbc 100644 --- a/packages/app/requirements.txt +++ b/packages/app/requirements.txt @@ -1,4 +1,6 @@ galaxy-auth galaxy-job-execution +galaxy-job-metrics +galaxy-tool-util galaxy-web-framework galaxy-web-stack diff --git a/packages/test_driver/requirements.txt b/packages/test_driver/requirements.txt index e8566b22706..db7ac8444af 100644 --- a/packages/test_driver/requirements.txt +++ b/packages/test_driver/requirements.txt @@ -1,4 +1,5 @@ galaxy-data +galaxy-web-apps nose pytest From 2041a650ad126b573e98f56108b323d3da42ed16 Mon Sep 17 00:00:00 2001 From: John Chilton Date: Thu, 2 Jul 2020 16:32:16 -0400 Subject: [PATCH 3/4] Update packages/test_driver/requirements.txt Co-authored-by: Nicola Soranzo --- packages/test_driver/requirements.txt | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/packages/test_driver/requirements.txt b/packages/test_driver/requirements.txt index db7ac8444af..299f7e4a303 100644 --- a/packages/test_driver/requirements.txt +++ b/packages/test_driver/requirements.txt @@ -2,4 +2,6 @@ galaxy-data galaxy-web-apps nose pytest - +pyyaml +sqlalchemy-utils +six From be8855ac1ccb8d1542697ec76d9bc04387733d41 Mon Sep 17 00:00:00 2001 From: John Chilton Date: Fri, 3 Jul 2020 08:34:29 -0400 Subject: [PATCH 4/4] Update packages/test_driver/requirements.txt Co-authored-by: Nicola Soranzo --- packages/test_driver/requirements.txt | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/packages/test_driver/requirements.txt b/packages/test_driver/requirements.txt index 299f7e4a303..6a3bbd80227 100644 --- a/packages/test_driver/requirements.txt +++ b/packages/test_driver/requirements.txt @@ -1,5 +1,10 @@ +galaxy-app galaxy-data +galaxy-test-base +galaxy-tool-util +galaxy-util galaxy-web-apps +galaxy-web-framework nose pytest pyyaml