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Report a couple common errors in dataset/job report.

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Report if empty inputs were used or if the same input was used more than once, these were identified as common sources of potential errors across many tools. Neither of these are definite problems, but both could be depending on the tool and both happen frequently. Outline a few more ideas as TODOs in the code.
This commit is contained in:
John Chilton
2019-04-16 10:24:28 -04:00
parent 4315f34586
commit 44856a3f75
4 changed files with 101 additions and 6 deletions
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test/api/test_jobs.py
+28
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@@ -190,6 +190,34 @@ class JobsApiTestCase(api.ApiTestCase):
assert_ok=False)
assert not dataset['visible']
@skip_without_tool('empty_output')
def test_common_problems(self):
with self.dataset_populator.test_history() as history_id:
empty_run_response = self.dataset_populator.run_tool(
tool_id='empty_output',
inputs={},
history_id=history_id,
)
empty_hda = empty_run_response["outputs"][0]
cat_empty_twice_run_response = self.dataset_populator.run_tool(
tool_id='cat1',
inputs={
'input1': {'src': 'hda', 'id': empty_hda['id']},
'queries_0|input2': {'src': 'hda', 'id': empty_hda['id']}
},
history_id=history_id,
)
empty_output_job = empty_run_response["jobs"][0]
cat_empty_job = cat_empty_twice_run_response["jobs"][0]
empty_output_common_problems_response = self._get('jobs/%s/common_problems' % empty_output_job["id"]).json()
cat_empty_common_problems_response = self._get('jobs/%s/common_problems' % cat_empty_job["id"]).json()
self._assert_has_keys(empty_output_common_problems_response, "has_empty_inputs", "has_duplicate_inputs")
self._assert_has_keys(cat_empty_common_problems_response, "has_empty_inputs", "has_duplicate_inputs")
assert not empty_output_common_problems_response["has_empty_inputs"]
assert cat_empty_common_problems_response["has_empty_inputs"]
assert not empty_output_common_problems_response["has_duplicate_inputs"]
assert cat_empty_common_problems_response["has_duplicate_inputs"]
@skip_without_tool('detect_errors_aggressive')
def test_report_error(self):
with self.dataset_populator.test_history() as history_id: