diff --git a/static/scripts/bundled/admin.bundled.js b/static/scripts/bundled/admin.bundled.js
index 1b67dca8cd7..ea683701bb8 100644
--- a/static/scripts/bundled/admin.bundled.js
+++ b/static/scripts/bundled/admin.bundled.js
@@ -1 +1 @@
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diff --git a/static/scripts/bundled/analysis.bundled.js b/static/scripts/bundled/analysis.bundled.js
index dbe3278b080..b7356fd59ce 100644
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this.key=e.key,this._initStorage(),this.maxSize=e.maxSize||s.defaultOptions.maxSize,this},s.prototype._hasStorage=function(){try{return localStorage.setItem("test","test"),localStorage.removeItem("test"),!0}catch(e){return!1}},s.prototype._initStorage=function(){return null===localStorage.getItem(this.key)?this.empty():this},s.prototype.add=function(e){var t=this,i=t._fetchAndParse(),n=i.length+1-t.maxSize;return n>0&&i.splice(0,n),i.push(e),t._unparseAndStore(i),i.length},s.prototype._fetchAndParse=function(){var e=this;return JSON.parse(localStorage.getItem(e.key))},s.prototype._unparseAndStore=function(e){var t=this;return localStorage.setItem(t.key,JSON.stringify(e))},s.prototype.length=function(){return this._fetchAndParse().length},s.prototype.get=function(e){return this._fetchAndParse().slice(0,e)},s.prototype.remove=function(e){var t=this._fetchAndParse(),i=t.splice(0,e);return this._unparseAndStore(t),i},s.prototype.empty=function(){return 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s(".select2-hidden-accessible").remove(),this.masthead.render(),this.renderMessageBox(),this.renderInactivityBox(),this.renderPanels(),this._checkCommunicationServerOnline(),this},renderMessageBox:function(){if(this.config.message_box_visible){var e=this.config.message_box_content||"",t=this.config.message_box_class||"info";this.$el.addClass("has-message-box"),this.$messagebox.attr("class","panel-"+t+"-message").html(e).toggle(!!e).show()}else this.$el.removeClass("has-message-box"),this.$messagebox.hide();return this},renderInactivityBox:function(){if(this.config.show_inactivity_warning){var e=this.config.inactivity_box_content||"",t=s("<a/>").attr("href",Galaxy.root+"user/resend_verification").text("Resend verification");this.$el.addClass("has-inactivity-box"),this.$inactivebox.html(e+" ").append(t).toggle(!!e).show()}else this.$el.removeClass("has-inactivity-box"),this.$inactivebox.hide();return this},renderPanels:function(){var e=this;return n.each(this._panelids,function(t){var i=e.panels[t];i?i.render():(e.$("#center").css(t,0),e.$("#"+t).hide())}),this},_template:function(){return['<div id="everything">','<div id="background"/>','<div id="masthead"/>','<div id="messagebox"/>','<div id="inactivebox" class="panel-warning-message" />','<div id="left" />','<div id="center" />','<div id="right" />',"</div>",'<div id="dd-helper" />'].join("")},toString:function(){return"PageLayoutView"},_checkCommunicationServerOnline:function(){var e=window.Galaxy.config.communication_server_host,t=window.Galaxy.config.communication_server_port,i=window.Galaxy.user.attributes.preferences,n=s("#show-chat-online");i&&-1!=["1","true"].indexOf(i.communication_server)?s.ajax({url:e+":"+t}).success(function(e){null!==window.Galaxy.user.id&&"hidden"===n.css("visibility")&&n.css("visibility","visible")}).error(function(e){n.css("visibility","hidden")}):n.css("visibility","hidden")}});t.default={View:p}}).call(t,i(2),i(1),i(0))},,,function(e,t,i){"use 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27:this.hideEditor()}},showEditor:function(){this.show_editor=!0,this.render()},hideEditor:function(){this.show_editor=!1,this.render()},_renderEditor:function(){return'<input class="tags-input" value="'+this.tagsToCSV()+'"/>'},_renderTags:function(){var e=this.model.get("tags"),t=Galaxy.root+"static/images/fugue/tag--plus.png",i=[];return n.each(e,function(e){e=0==e.indexOf("name:")?e.slice(5):e;var t='<span class="label label-info">'+e+"</span>";i.push(t)}),0===i.length&&i.push("<img src="+t+' class="add-tag-button" title="Add tags"/>'),i.join(" ")},tagsToCSV:function(){var e=this,t=this.model.get("tags");return!n.isArray(t)||n.isEmpty(t)?"":t.map(function(t){return n.escape(e._nameToHash(t))}).sort().join(",")},$input:function(){return this.$el.find("input.tags-input")},_getTagsUsed:function(){var e=this;return n.map(Galaxy.user.get("tags_used"),e._nameToHash)},_setUpBehaviors:function(){var e=this;this.$input().on("change",function(t){t.val=n.map(t.val,e._hashToName),e.model.save({tags:t.val}),t.added&&e._addNewTagToTagsUsed(""+t.added.text)})},_addNewTagToTagsUsed:function(e){var t=Galaxy.user.get("tags_used");n.contains(t,e)||(t.push(e),t.sort(),Galaxy.user.set("tags_used",t))},remove:function(){this.$input.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["TagsEditor(",""+this.model,")"].join("")}});t.default={TagsEditor:d}}).call(t,i(2),i(1))},,,,,,,,,,,,,,function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var 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a=i(3);!function(e){e&&e.__esModule}(a);t.default=e.View.extend({options:{class_check:"fa-check-square-o",class_uncheck:"fa-square-o",parameters:[{id:"space_to_tab",title:"Convert spaces to tabs"},{id:"to_posix_lines",title:"Use POSIX standard"}]},initialize:function(e){this.model=e.model,this.setElement(n("<div/>").addClass("upload-settings")),this.$el.append(n("<div/>").addClass("upload-settings-cover")),this.$el.append(n("<table/>").addClass("upload-settings-table ui-table-striped").append("<tbody/>")),this.$cover=this.$(".upload-settings-cover"),this.$table=this.$(".upload-settings-table > tbody"),this.listenTo(this.model,"change",this.render,this),this.model.trigger("change")},render:function(){var e=this;this.$table.empty(),s.each(this.options.parameters,function(t){var i=n("<div/>").addClass("upload-"+t.id+" upload-icon-button 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To upload some files, log in to the FTP server at <strong>"+t.ftp_upload_site+"</strong> using your Galaxy credentials.",collection:null,onchange:function(){},onadd:function(){},onremove:function(){}}).set(t),this.collection=this.model.get("collection"),this.setElement(this._template()),this.$content=this.$(".upload-ftp-content"),this.$wait=this.$(".upload-ftp-wait"),this.$help=this.$(".upload-ftp-help"),this.$number=this.$(".upload-ftp-number"),this.$disk=this.$(".upload-ftp-disk"),this.$body=this.$(".upload-ftp-body"),this.$warning=this.$(".upload-ftp-warning"),this.$select=this.$(".upload-ftp-select-all"),this.render()},render:function(){var e=this;this.$wait.show(),this.$content.hide(),this.$warning.hide(),this.$help.hide(),n.ajax({url:Galaxy.root+"api/remote_files",method:"GET",success:function(t){e.model.set("ftp_files",t),e._index(),e._renderTable()},error:function(){e._renderTable()}})},_renderTable:function(){var e=this,t=this.model.get("ftp_files");if(this.rows=[],t&&t.length>0){this.$body.empty();var i=0;s.each(t,function(t){e.rows.push(e._renderRow(t)),i+=t.size}),this.$number.html(t.length+" files"),this.$disk.html(o.default.bytesToString(i,!0)),this.collection&&(this.$("._has_collection").show(),this.$select.addClass(this.model.get("class_add")).off().on("click",function(){e._all()}),this._refresh()),this.$content.show()}else this.$warning.show();this.model.get("help_enabled")&&this.$help.show(),this.$wait.hide()},_renderRow:function(e){var t=this,i=this.model.attributes,s=n(this._templateRow(e)),a=s.find(".icon");if(this.$body.append(s),this.collection){var o=this.ftp_index[e.path];a.addClass(void 0===o?i.class_add:i.class_remove),s.on("click",function(){t._switch(a,e),t._refresh()})}else s.on("click",function(){i.onchange(e)});return a},_index:function(){var e=this;this.ftp_index={},this.collection&&this.collection.each(function(t){"ftp"==t.get("file_mode")&&(e.ftp_index[t.get("file_path")]=t.id)})},_all:function(){var e=this.model.attributes,t=this.model.get("ftp_files"),i=this.$select.hasClass(e.class_add);for(var n in t){var s=t[n],a=this.ftp_index[s.path];(void 0===a&&i||void 0!==a&&!i)&&this._switch(this.rows[n],s)}this._refresh()},_switch:function(e,t){e.removeClass();var i=this.model.attributes,n=this.ftp_index[t.path];if(void 0===n){var s=i.onadd(t);e.addClass(i.class_remove),this.ftp_index[t.path]=s}else i.onremove(n),e.addClass(i.class_add),this.ftp_index[t.path]=void 0},_refresh:function(){var e=s.reduce(this.ftp_index,function(e,t){return void 0!==t&&e++,e},0);this.$select.removeClass(),0==e?this.$select.addClass(this.model.get("class_add")):this.$select.addClass(e==this.rows.length?this.model.get("class_remove"):this.model.get("class_partial"))},_templateRow:function(e){return'<tr class="upload-ftp-row"><td class="_has_collection" style="display: none;"><div class="icon"/></td><td class="ftp-name">'+s.escape(e.path)+'</td><td class="ftp-size">'+o.default.bytesToString(e.size)+'</td><td class="ftp-time">'+e.ctime+"</td></tr>"},_template:function(){return'<div class="'+this.model.get("cls")+'"><div class="upload-ftp-wait fa fa-spinner fa-spin"/><div class="upload-ftp-help">'+this.model.get("help_text")+'</div><div class="upload-ftp-content"><span style="whitespace: nowrap; float: left;">Available files: </span><span style="whitespace: nowrap; float: right;"><span class="upload-icon fa fa-file-text-o"/><span class="upload-ftp-number"/>&nbsp;&nbsp;<span class="upload-icon fa fa-hdd-o"/><span class="upload-ftp-disk"/></span><table class="grid" style="float: left;"><thead><tr><th class="_has_collection" style="display: none;"><div class="upload-ftp-select-all"></th><th>Name</th><th>Size</th><th>Created</th></tr></thead><tbody class="upload-ftp-body"/></table></div><div class="upload-ftp-warning warningmessage">Your FTP directory does not contain any files.</div>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(3),o=(s(a),i(15)),r=s(o);t.default=e.View.extend({initialize:function(t){this.model=new e.Model(t),this.setElement("<div/>"),this.render()},render:function(){var e=this.model.attributes,t=n.findWhere(e.list,{id:e.extension});this.extension_popup&&this.extension_popup.remove(),this.extension_popup=new r.default.View({placement:e.placement||"bottom",container:e.$el}),this.extension_popup.title(e.title),this.extension_popup.empty(),this.extension_popup.append(this._templateDescription(t)),this.extension_popup.show()},_templateDescription:function(e){if(e.description){var t=e.description;return e.description_url&&(t+='&nbsp;(<a href="'+e.description_url+'" target="_blank">read more</a>)'),t}return"There is no description available for this file extension."}})}).call(t,i(2),i(1))},function(e,t,i){"use strict";(function(e,t){!function(i){e.event.props.push("dataTransfer"),i.uploadpost=function(t){var n=i.extend({},{data:{},success:function(){},error:function(){},progress:function(){},url:null,maxfilesize:2048,error_filesize:"File exceeds 2GB. Please use a FTP client.",error_default:"Please make sure the file is available.",error_server:"Upload request failed.",error_login:"Uploads require you to log in."},t),s=n.data;if(s.error_message)return void n.error(s.error_message);var a=new FormData;for(var o in s.payload)a.append(o,s.payload[o]);var r=0;for(var o in s.files){var l=s.files[o];a.append(l.name,l.file,l.file.name),r+=l.file.size}if(r>1048576*n.maxfilesize)return void n.error(n.error_filesize);var d=new XMLHttpRequest;d.open("POST",n.url,!0),d.setRequestHeader("Accept","application/json"),d.setRequestHeader("Cache-Control","no-cache"),d.setRequestHeader("X-Requested-With","XMLHttpRequest"),d.onreadystatechange=function(){if(d.readyState==d.DONE){var t=null,i="";if(d.responseText)try{t=e.parseJSON(d.responseText),i=t.err_msg}catch(e){t=d.responseText,i=t}if(d.status<200||d.status>299){var s=d.statusText;403==d.status?s=n.error_login:0==d.status?s=n.error_server:s||(s=n.error_default),n.error(s+" ("+d.status+"). "+i)}else n.success(t)}},d.upload.addEventListener("progress",function(e){e.lengthComputable&&n.progress(Math.round(100*e.loaded/e.total))},!1),Galaxy.emit.debug("uploadbox::uploadpost()","Posting following data.",n),d.send(a)},i.fn.uploadinput=function(e){var t=this,n=i.extend({},{ondragover:function(){},ondragleave:function(){},onchange:function(){},multiple:!1},e),s=i('<input type="file" style="display: none" '+(n.multiple&&"multiple"||"")+"/>");return t.append(s.change(function(e){n.onchange(e.target.files),i(this).val("")})),t.on("drop",function(e){n.ondragleave(e),e.dataTransfer&&(n.onchange(e.dataTransfer.files),e.preventDefault())}),t.on("dragover",function(e){e.preventDefault(),n.ondragover(e)}),t.on("dragleave",function(e){e.stopPropagation(),n.ondragleave(e)}),{dialog:function(){s.trigger("click")}}},i.fn.uploadbox=function(e){function n(e){if(e&&e.length&&!g){var i=void 0;return t.each(e,function(e,i){"new"!==e.mode&&t.filter(f,function(t){return t.name===e.name&&t.size===e.size}).length&&(e.duplicate=!0)}),t.each(e,function(e){e.duplicate||(i=String(p++),f[i]=e,h.announce(i,f[i]),m++)}),i}}function s(e){f[e]&&(delete f[e],m--)}function a(){if(0==m||_)return _=!1,g=!1,void h.complete();g=!0;var e=-1;for(var t in f){e=t;break}f[e];s(e),i.uploadpost({url:h.url,data:h.initialize(e),success:function(t){h.success(e,t),a()},error:function(t){h.error(e,t),a()},progress:function(t){h.progress(e,t)}})}function o(){v.dialog()}function r(e){for(e in f)s(e)}function l(){g||(g=!0,a())}function d(){_=!0}function c(e){return h=i.extend({},h,e)}function u(){return window.File&&window.FormData&&window.XMLHttpRequest&&window.FileList}var h=i.extend({},{dragover:function(){},dragleave:function(){},announce:function(e){},initialize:function(e){},progress:function(e,t){},success:function(e,t){},error:function(e,t){alert(t)},complete:function(){}},e),f={},p=0,m=0,g=!1,_=!1,v=i(this).uploadinput({multiple:!0,onchange:function(e){n(e)},ondragover:e.ondragover,ondragleave:e.ondragleave});return{select:o,add:n,remove:s,start:l,stop:d,reset:r,configure:c,compatible:u}}}(e)}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}function r(e,t){var i=e.toJSON();return $(i,{defaultHideSourceItems:t,creationFn:function(t,i,n){return t=t.map(function(e){return{id:e.id,name:e.name,src:"dataset"===e.history_content_type?"hda":"hdca"}}),e.createHDCA(t,"list",i,n)}})}Object.defineProperty(t,"__esModule",{value:!0});var l=i(59),d=o(l),c=i(16),u=o(c),h=i(5),f=o(h),p=i(108),m=o(p),g=i(8),_=o(g),v=i(109),y=(o(v),i(4)),w=o(y);i(110);var b=e.View.extend(f.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"collection-element",initialize:function(e){this.element=e.element||{},this.selected=e.selected||!1},render:function(){this.dragStartHandler=n.bind(this._dragstart,this),this.dragEndHandler=n.bind(this._dragend,this);var e=this.$el.attr("data-element-id",this.element.id).attr("draggable",!0).html(this.template({element:this.element})).get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this.selected&&this.$el.addClass("selected"),this},template:n.template(['<a class="name" title="',(0,w.default)("Click to rename"),'" href="javascript:void(0)">',"<%- element.name %>","</a>",'<button class="discard btn btn-sm" title="',(0,w.default)("Remove this dataset from the list"),'">',(0,w.default)("Discard"),"</button>"].join("")),select:function(e){this.$el.toggleClass("selected",e),this.trigger("select",{source:this,selected:this.$el.hasClass("selected")})},discard:function(){var e=this,t=this.$el.parent().width();this.$el.animate({"margin-right":t},"fast",function(){e.trigger("discard",{source:e}),e.destroy()})},destroy:function(){this.off(),this.$el.remove()},events:{click:"_click","click .name":"_clickName","click .discard":"_clickDiscard",dragover:"_sendToParent",drop:"_sendToParent"},_click:function(e){e.stopPropagation(),this.select(e)},_clickName:function(e){e.stopPropagation(),e.preventDefault();var t=([(0,w.default)("Enter a new name for the element"),":\n(",(0,w.default)("Note that changing the name here will not rename the dataset"),")"].join(""),prompt((0,w.default)("Enter a new name for the element")+":",this.element.name));t&&(this.element.name=t,this.render())},_clickDiscard:function(e){e.stopPropagation(),this.discard()},_dragstart:function(e){e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.element)),this.$el.addClass("dragging"),this.$el.parent().trigger("collection-element.dragstart",[this])},_dragend:function(e){this.$el.removeClass("dragging"),this.$el.parent().trigger("collection-element.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"DatasetCollectionElementView()"}}),x=e.View.extend(f.default.LoggableMixin).extend(m.default.CollectionCreatorMixin).extend({_logNamespace:"collections",elementViewClass:b,collectionClass:d.default.HistoryDatasetCollection,className:"list-collection-creator collection-creator flex-row-container",minElements:1,defaultAttributes:{creationFn:function(){throw new TypeError("no creation fn for creator")},oncreate:function(){},oncancel:function(){},autoscrollDist:24,highlightClr:"rgba( 64, 255, 255, 1.0 )"},footerSettings:{".hide-originals":"hideOriginals"},initialize:function(e){this.metric("ListCollectionCreator.initialize",e);var t=this;n.each(this.defaultAttributes,function(i,n){i=e[n]||i,t[n]=i}),t.initialElements=e.elements||[],this._setUpCommonSettings(e),this._instanceSetUp(),this._elementsSetUp(),this._setUpBehaviors()},_instanceSetUp:function(){this.selectedIds={},this.$dragging=null,this.blocking=!1},_elementsSetUp:function(){this.invalidElements=[],this.workingElements=[],this.elementViews=[],this.workingElements=this.initialElements.slice(0),this._ensureElementIds(),this._validateElements(),this._mangleDuplicateNames(),this._sortElements()},_ensureElementIds:function(){return this.workingElements.forEach(function(e){e.hasOwnProperty("id")||(e.id=n.uniqueId())}),this.workingElements},_validateElements:function(){var e=this;return e.invalidElements=[],this.workingElements=this.workingElements.filter(function(t){var i=e._isElementInvalid(t);return i&&e.invalidElements.push({element:t,text:i}),!i}),this.workingElements},_isElementInvalid:function(e){return"dataset"!==e.history_content_type?(0,w.default)("is not a dataset"):e.state===u.default.OK||n.contains(u.default.NOT_READY_STATES,e.state)?e.deleted||e.purged?(0,w.default)("has been deleted or purged"):null:(0,w.default)("has errored, is paused, or is not accessible")},_mangleDuplicateNames:function(){var e=1,t={};this.workingElements.forEach(function(i){for(var n=i.name;t.hasOwnProperty(n);)if(n=i.name+" ("+e+")",(e+=1)>=900)throw new Error("Safety hit in while loop - thats impressive");i.name=n,t[i.name]=!0})},_sortElements:function(e){},render:function(e,t){return this.workingElements.length<this.minElements?this._renderInvalid(e,t):(this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.$(".collection-name").focus(),this.trigger("rendered",this),this)},_renderInvalid:function(e,t){return this.$el.empty().html(this.templates.invalidInitial({problems:this.invalidElements,elements:this.workingElements})),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var i=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend(s(this.templates.helpContent()));return this.invalidElements.length&&this._invalidElementsAlert(),i},_renderMiddle:function(e,t){var i=this.$(".middle").empty().html(this.templates.middle());return this._renderList(e),i},_addPluginComponents:function(){this.$(".help-content i").hoverhighlight(".collection-creator",this.highlightClr)},_invalidElementsAlert:function(){this._showAlert(this.templates.invalidElements({problems:this.invalidElements}),"alert-warning")},_disableNameAndCreate:function(e){(e=!!n.isUndefined(e)||e)&&(this.$(".collection-name").prop("disabled",!0),this.$(".create-collection").toggleClass("disabled",!0))},$list:function(){return this.$(".collection-elements")},_renderClearSelected:function(){n.size(this.selectedIds)?this.$(".collection-elements-controls > .clear-selected").show():this.$(".collection-elements-controls > .clear-selected").hide()},_renderList:function(e,t){var i=this,s=a("<div/>"),o=i.$list();n.each(this.elementViews,function(e){e.destroy(),i.removeElementView(e)}),i.workingElements.forEach(function(e){var t=i._createElementView(e);s.append(t.$el)}),i._renderClearSelected(),o.empty().append(s.children()),n.invoke(i.elementViews,"render"),o.height()>o.css("max-height")?o.css("border-width","1px 0px 1px 0px"):o.css("border-width","0px")},_createElementView:function(e){var t=new this.elementViewClass({element:e,selected:n.has(this.selectedIds,e.id)});return this.elementViews.push(t),this._listenToElementView(t),t},_listenToElementView:function(e){var t=this;t.listenTo(e,{select:function(e){var i=e.source.element;e.selected?t.selectedIds[i.id]=!0:delete t.selectedIds[i.id],t.trigger("elements:select",e)},discard:function(e){t.trigger("elements:discard",e)}})},addElementView:function(e){},removeElementView:function(e){delete this.selectedIds[e.element.id],this._renderClearSelected(),this.elementViews=n.without(this.elementViews,e),this.stopListening(e)},_renderNoElementsLeft:function(){this._disableNameAndCreate(!0),this.$(".collection-elements").append(this.templates.noElementsLeft())},_elementToJSON:function(e){return e},createList:function(e){if(!this.workingElements.length){var t=(0,w.default)("No valid elements for final list")+". ";return t+='<a class="cancel-create" href="javascript:void(0);">'+(0,w.default)("Cancel")+"</a> ",t+=(0,w.default)("or"),t+=' <a class="reset" href="javascript:void(0);">'+(0,w.default)("start over")+"</a>.",void this._showAlert(t)}var i=this,n=this.workingElements.map(function(e){return i._elementToJSON(e)});return i.blocking=!0,i.creationFn(n,e,i.hideOriginals).always(function(){i.blocking=!1}).fail(function(e,t,n){i.trigger("error",{xhr:e,status:t,message:(0,w.default)("An error occurred while creating this collection")})}).done(function(e,t,n){i.trigger("collection:created",e,t,n),i.metric("collection:created",e),"function"==typeof i.oncreate&&i.oncreate.call(this,e,t,n)})},_setUpBehaviors:function(){return this.on("error",this._errorHandler),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("elements:select",function(e){this._renderClearSelected()}),this.on("elements:discard",function(e){var t=e.source.element;this.removeElementView(e.source),this.workingElements=n.without(this.workingElements,t),this.workingElements.length||this._renderNoElementsLeft()}),this},_errorHandler:function(e){this.error(e);var t=this,i=e.message||(0,w.default)("An error occurred");if(e.xhr){var n=e.xhr,s=e.message;0===n.readyState&&0===n.status?i+=": "+(0,w.default)("Galaxy could not be reached and may be updating.")+(0,w.default)(" Try again in a few minutes."):n.responseJSON?i+=":<br /><pre>"+JSON.stringify(n.responseJSON)+"</pre>":i+=": "+s}t._showAlert(i,"alert-danger")},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .reset":"reset","click .clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart .collection-elements":"_elementDragstart","collection-element.dragend   .collection-elements":"_elementDragend","change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","change .hide-originals":"_changeHideOriginals","click .cancel-create":"_cancelCreate","click .create-collection":"_clickCreate"},reset:function(){this._instanceSetUp(),this._elementsSetUp(),this.render()},clearSelectedElements:function(e){this.$(".collection-elements .collection-element").removeClass("selected"),this.$(".collection-elements-controls > .clear-selected").hide()},_dragoverElements:function(e){e.preventDefault();var t=this.$list();this._checkForAutoscroll(t,e.originalEvent.clientY);var i=this._getNearestElement(e.originalEvent.clientY);this.$(".element-drop-placeholder").remove();var n=s('<div class="element-drop-placeholder"></div>');i.length?i.before(n):t.append(n)},_checkForAutoscroll:function(e,t){var i=e.offset(),n=e.scrollTop(),s=t-i.top,a=i.top+e.outerHeight()-t;s>=0&&s<this.autoscrollDist?e.scrollTop(n-2):a>=0&&a<this.autoscrollDist&&e.scrollTop(n+2)},_getNearestElement:function(e){for(var t=this.$(".collection-elements li.collection-element").toArray(),i=0;i<t.length;i++){var n=s(t[i]),a=n.offset().top,o=Math.floor(n.outerHeight()/2)+4;if(a+o>e&&a-o<e)return n}return s()},_dropElements:function(e){e.originalEvent&&(e=e.originalEvent),e.preventDefault(),e.dataTransfer.dropEffect="move";var t=this._getNearestElement(e.clientY);return t.length?this.$dragging.insertBefore(t):this.$dragging.insertAfter(this.$(".collection-elements .collection-element").last()),this._syncOrderToDom(),!1},_syncOrderToDom:function(){var e=this,t=[];this.$(".collection-elements .collection-element").each(function(){var i=s(this).attr("data-element-id"),a=n.findWhere(e.workingElements,{id:i});a?t.push(a):console.error("missing element: ",i)}),this.workingElements=t,this._renderList()},_elementDragstart:function(e,t){t.select(!0),this.$dragging=this.$(".collection-elements .collection-element.selected")},_elementDragend:function(e,t){s(".element-drop-placeholder").remove(),this.$dragging=null},templates:n.extend({},m.default.CollectionCreatorMixin._creatorTemplates,{header:n.template(['<div class="main-help well clear">','<a class="more-help" href="javascript:void(0);">',(0,w.default)("More help"),"</a>",'<div class="help-content">','<a class="less-help" href="javascript:void(0);">',(0,w.default)("Less"),"</a>","</div>","</div>",'<div class="alert alert-dismissable">','<button type="button" class="close" data-dismiss="alert" ','title="',(0,w.default)("Close and show more help"),'" aria-hidden="true">&times;</button>','<span class="alert-message"></span>',"</div>"].join("")),middle:n.template(['<div class="collection-elements-controls">','<a class="reset" href="javascript:void(0);" ','title="',(0,w.default)("Undo all reordering and discards"),'">',(0,w.default)("Start over"),"</a>",'<a class="clear-selected" href="javascript:void(0);" ','title="',(0,w.default)("De-select all selected datasets"),'">',(0,w.default)("Clear selected"),"</a>","</div>",'<div class="collection-elements scroll-container flex-row">',"</div>"].join("")),footer:n.template(['<div class="attributes clear">','<div class="clear">','<label class="setting-prompt pull-right">',(0,w.default)("Hide original elements"),"?",'<input class="hide-originals pull-right" type="checkbox" />',"</label>","</div>",'<div class="clear">','<input class="collection-name form-control pull-right" ','placeholder="',(0,w.default)("Enter a name for your new collection"),'" />','<div class="collection-name-prompt pull-right">',(0,w.default)("Name"),":</div>","</div>","</div>",'<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,w.default)("Cancel"),"</button>",'<div class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,w.default)("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',(0,w.default)("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',(0,w.default)("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',(0,w.default)("Create list"),"</button>","</div>","</div>"].join("")),helpContent:n.template(["<p>",(0,w.default)(["Collections of datasets are permanent, ordered lists of datasets that can be passed to tools and ","workflows in order to have analyses done on each member of the entire group. 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i={details:"all"};return t.data=e.extend(t.data||{},i),this.fetch(t)},_filterAndUpdate:function(e,t){var i=this,n=i.model.prototype.idAttribute,s=[t];return i.fetch({filters:e,remove:!1}).then(function(e){return e=e.reduce(function(e,t,s){var a=i.get(t[n]);return a?e.concat(a):e},[]),i.ajaxQueue("save",s,e)})},ajaxQueue:function(t,i,n){return n=n||this.models,new y.default.AjaxQueue(n.slice().reverse().map(function(n,s){var a=e.isString(t)?n[t]:t;return function(){return a.apply(n,i)}})).deferred},progressivelyFetchDetails:function(t){function i(n){n=n||0;var r=e.extend(e.clone(t),{view:"summary",keys:l,limit:o,offset:n,reset:0===n,remove:!1});e.defer(function(){a.fetch.call(a,r).fail(s.reject).done(function(e){s.notify(e,o,n),e.length!==o?(a.allFetched=!0,s.resolve(e,o,n)):i(n+o)})})}t=t||{};var s=n.Deferred(),a=this,o=t.limitPerCall||a.limitPerProgressiveFetch,r=d.default.HistoryDatasetAssociation.prototype.searchAttributes,l=r.join(",");return i(),s},isCopyable:function(t){var 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e.has(t.attributes,"annotation")})},matches:function(e){return this.filter(function(t){return t.matches(e)})},clone:function(){var e=s.Collection.prototype.clone.call(this);return e.historyId=this.historyId,e},toString:function(){return["HistoryContents(",[this.historyId,this.length].join(),")"].join("")}});t.default={HistoryContents:x}}).call(t,i(1),i(0),i(2))},function(e,t,i){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var n=i(5),s=function(e){return e&&e.__esModule?e:{default:e}}(n),a=s.default.SessionStorageModel.extend({defaults:{expandedIds:{},show_deleted:!1,show_hidden:!1},addExpanded:function(e){var t=this.get("expandedIds");t[e.id]=e.get("id"),this.save("expandedIds",t)},removeExpanded:function(e){var t=this.get("expandedIds");delete t[e.id],this.save("expandedIds",t)},isExpanded:function(t){return e.result(this.get("expandedIds"),t,!1)},allExpanded:function(){return e.values(this.get("expandedIds"))},clearExpanded:function(){this.set("expandedIds",{})},includeDeleted:function(t){return e.isUndefined(t)||this.set("show_deleted",t),this.get("show_deleted")},includeHidden:function(t){return e.isUndefined(t)||this.set("show_hidden",t),this.get("show_hidden")},toString:function(){return"HistoryPrefs("+this.id+")"}},{storageKeyPrefix:"history:",historyStorageKey:function(e){if(!e)throw new Error("HistoryPrefs.historyStorageKey needs valid id: "+e);return a.storageKeyPrefix+e},get:function(e){return new a({id:a.historyStorageKey(e)})},clearAll:function(e){for(var t in sessionStorage)0===t.indexOf(a.storageKeyPrefix)&&sessionStorage.removeItem(t)}});t.default={HistoryPrefs:a}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=i(5),l=o(r),d=i(4),c=(o(d),e.View.extend(l.default.LoggableMixin).extend({_logNamespace:"list",initialize:function(e){this.expanded=e.expanded||!1,this.log("\t expanded:",this.expanded),this.fxSpeed=void 0!==e.fxSpeed?e.fxSpeed:this.fxSpeed},fxSpeed:"fast",render:function(e){var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){var e=n(this.templates.el(this.model.toJSON(),this));return this.expanded&&this.$details(e).replaceWith(this._renderDetails().show()),e},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;0===t?(i._swapNewRender(e),i.trigger("rendered",i)):n(i).queue("fx",[function(e){i.$el.fadeOut(t,e)},function(t){i._swapNewRender(e),t()},function(e){i.$el.fadeIn(t,e)},function(e){i.trigger("rendered",i),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",s.isFunction(this.className)?this.className():this.className).append(e.children())},_setUpBehaviors:function(e){e=e||this.$el,e.find("[title]").tooltip({placement:"bottom"})},$details:function(e){return e=e||this.$el,e.find("> .details")},_renderDetails:function(){var e=n(this.templates.details(this.model.toJSON(),this));return this._setUpBehaviors(e),e},toggleExpanded:function(e){return e=void 0===e?!this.expanded:e,e?this.expand():this.collapse(),this},expand:function(){var e=this;return e._fetchModelDetails().always(function(){e._expand()})},_fetchModelDetails:function(){return this.model.hasDetails()?a.when():this.model.fetch()},_expand:function(){var e=this,t=e._renderDetails();e.$details().replaceWith(t),e.expanded=!0,e.$details().slideDown(e.fxSpeed,function(){e.trigger("expanded",e)})},collapse:function(){this.debug(this+"(ExpandableView).collapse");var e=this;e.expanded=!1,this.$details().slideUp(e.fxSpeed,function(){e.trigger("collapsed",e)})}})),u=c.extend(l.default.mixin(l.default.SelectableViewMixin,l.default.DraggableViewMixin,{tagName:"div",className:"list-item",initialize:function(e){c.prototype.initialize.call(this,e),l.default.SelectableViewMixin.initialize.call(this,e),l.default.DraggableViewMixin.initialize.call(this,e),this._setUpListeners()},_setUpListeners:function(){return this.on("selectable",function(e){e?this.$(".primary-actions").hide():this.$(".primary-actions").show()},this),this},_buildNewRender:function(){var e=c.prototype._buildNewRender.call(this);return e.children(".warnings").replaceWith(this._renderWarnings()),e.children(".title-bar").replaceWith(this._renderTitleBar()),e.children(".primary-actions").append(this._renderPrimaryActions()),e.find("> .title-bar .subtitle").replaceWith(this._renderSubtitle()),e},_swapNewRender:function(e){return c.prototype._swapNewRender.call(this,e),this.selectable&&this.showSelector(0),this.draggable&&this.draggableOn(),this.$el},_renderWarnings:function(){var e=this,t=n('<div class="warnings"></div>'),i=e.model.toJSON();return s.each(e.templates.warnings,function(s){t.append(n(s(i,e)))}),t},_renderTitleBar:function(){return n(this.templates.titleBar(this.model.toJSON(),this))},_renderPrimaryActions:function(){return[]},_renderSubtitle:function(){return n(this.templates.subtitle(this.model.toJSON(),this))},events:{"click .title-bar":"_clickTitleBar","keydown .title-bar":"_keyDownTitleBar","click .selector":"toggleSelect"},_clickTitleBar:function(e){e.stopPropagation(),e.altKey?(this.toggleSelect(e),this.selectable||this.showSelector()):this.toggleExpanded()},_keyDownTitleBar:function(e){return!e||"keydown"!==e.type||32!==e.keyCode&&13!==e.keyCode||(this.toggleExpanded(),e.stopPropagation(),!1)},toString:function(){return"ListItemView("+(this.model?""+this.model:"(no model)")+")"}}));u.prototype.templates=function(){return{el:l.default.wrapTemplate(['<div class="list-element">','<div class="warnings"></div>','<div class="selector">','<span class="fa fa-2x fa-square-o"></span>',"</div>",'<div class="primary-actions"></div>','<div class="title-bar"></div>','<div class="details"></div>',"</div>"]),warnings:{},titleBar:l.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.name %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element"),subtitle:l.default.wrapTemplate(['<div class="subtitle"></div>']),details:l.default.wrapTemplate(['<div class="details"></div>'])}}();var h=u.extend({foldoutStyle:"foldout",foldoutPanelClass:null,initialize:function(e){"drilldown"===this.foldoutStyle&&(this.expanded=!1),this.foldoutStyle=e.foldoutStyle||this.foldoutStyle,this.foldoutPanelClass=e.foldoutPanelClass||this.foldoutPanelClass,u.prototype.initialize.call(this,e),this.foldout=this._createFoldoutPanel()},_renderDetails:function(){if("drilldown"===this.foldoutStyle)return n();var e=u.prototype._renderDetails.call(this);return this._attachFoldout(this.foldout,e)},_createFoldoutPanel:function(){var e=this.model,t=this._getFoldoutPanelClass(e),i=this._getFoldoutPanelOptions(e);return new t(s.extend(i,{model:e}))},_getFoldoutPanelClass:function(){return this.foldoutPanelClass},_getFoldoutPanelOptions:function(){return{foldoutStyle:this.foldoutStyle,fxSpeed:this.fxSpeed}},_attachFoldout:function(e,t){return t=t||this.$("> .details"),this.foldout=e.render(0),e.$("> .controls").hide(),t.append(e.$el)},expand:function(){var e=this;return e._fetchModelDetails().always(function(){"foldout"===e.foldoutStyle?e._expand():"drilldown"===e.foldoutStyle&&e._expandByDrilldown()})},_expandByDrilldown:function(){var e=this;e.listenTo(e.foldout,"close",function(){e.trigger("collapsed:drilldown",e,e.foldout)}),e.trigger("expanded:drilldown",e,e.foldout)}});h.prototype.templates=function(){var e=l.default.wrapTemplate(['<div class="details">',"</div>"],"collection");return s.extend({},u.prototype.templates,{details:e})}(),t.default={ExpandableView:c,ListItemView:u,FoldoutListItemView:h}}).call(t,i(2),i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=i(65),l=o(r),d=i(16),c=o(d),u=i(21),h=o(u),f=i(5),p=o(f),m=i(4),g=o(m),_=l.default.ListItemView,v=_.extend({_logNamespace:"dataset",className:_.prototype.className+" dataset",id:function(){return["dataset",this.model.get("id")].join("-")},initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log(this+".initialize:",e),_.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_setUpListeners:function(){_.prototype._setUpListeners.call(this);var t=this;return t.listenTo(t.model,{change:function(i){t.model.changedAttributes().state&&t.model.inReadyState()&&t.expanded&&!t.model.hasDetails()?t.model.fetch({silent:!0}).done(function(){t.render()}):e.has(i.changed,"tags")&&1===e.keys(i.changed).length?t.$(".nametags").html(t._renderNametags()):t.render()}})},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):n.when()},remove:function(e,t){var i=this;e=e||this.fxSpeed,this.$el.fadeOut(e,function(){s.View.prototype.remove.call(i),t&&t.call(i)})},_swapNewRender:function(e){return _.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var e=this.model.get("state");if(e===c.default.NOT_VIEWABLE||e===c.default.DISCARDED||!this.model.get("accessible"))return null;var t={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))t.disabled=!0,t.title=(0,g.default)("Cannot display datasets removed from disk");else if(e===c.default.UPLOAD)t.disabled=!0,t.title=(0,g.default)("This dataset must finish uploading before it can be viewed");else if(e===c.default.NEW)t.disabled=!0,t.title=(0,g.default)("This dataset is not yet viewable");else{t.title=(0,g.default)("View data"),t.href=this.model.urls.display;var i=this;t.onclick=function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.addDataset(i.model.get("id")),e.preventDefault())}}return t.faIcon="fa-eye",(0,h.default)(t)},_renderDetails:function(){if(this.model.get("state")===c.default.NOT_VIEWABLE)return a(this.templates.noAccess(this.model.toJSON(),this));var e=_.prototype._renderDetails.call(this);return e.find(".actions .left").empty().append(this._renderSecondaryActions()),e.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),e.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(e),e},_renderSummary:function(){var e=this.model.toJSON(),t=this.templates.summaries[e.state];return(t=t||this.templates.summaries.unknown)(e,this)},_renderDetailMessages:function(){var t=this,i=a('<div class="detail-messages"></div>'),n=t.model.toJSON();return e.each(t.templates.detailMessages,function(e){i.append(a(e(n,t)))}),i},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case c.default.NOT_VIEWABLE:return[];case c.default.OK:case c.default.FAILED_METADATA:case c.default.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return(0,h.default)({title:(0,g.default)("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle",onclick:function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:"Dataset details",url:this.href}),e.preventDefault(),e.stopPropagation())}})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:e.isEmpty(this.model.get("meta_files"))?a(['<a class="download-btn icon-btn" ','href="',this.model.urls.download,'" title="'+(0,g.default)("Download")+'" download>','<span class="fa fa-floppy-o"></span>',"</a>"].join("")):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var t=this.model.urls;return a(['<div class="metafile-dropdown dropdown">','<a class="download-btn icon-btn" href="javascript:void(0)" data-toggle="dropdown"',' title="'+(0,g.default)("Download")+'">','<span class="fa fa-floppy-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu" aria-labelledby="dLabel">','<li><a href="'+t.download+'" download>',(0,g.default)("Download dataset"),"</a></li>",e.map(this.model.get("meta_files"),function(e){return['<li><a href="',t.meta_download+e.file_type,'">',(0,g.default)("Download")," ",e.file_type,"</a></li>"].join("")}).join("\n"),"</ul>","</div>"].join("\n"))},_renderNametags:function(){return e.template(["<% _.each(_.sortBy(_.uniq(tags), function(x) { return x }), function(tag){ %>",'<% if (tag.indexOf("name:") == 0){ %>','<span class="label label-info"><%- tag.slice(5) %></span>',"<% } %>","<% }); %>"].join(""))({tags:this.model.get("tags")})},events:e.extend(e.clone(_.prototype.events),{"click .display-btn":function(e){this.trigger("display",this,e)},"click .params-btn":function(e){this.trigger("params",this,e)},"click .download-btn":function(e){this.trigger("download",this,e)}}),toString:function(){return"DatasetListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=e.extend({},_.prototype.templates.warnings,{failed_metadata:p.default.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','<div class="warningmessagesmall">',(0,g.default)("An error occurred setting the metadata for this dataset"),"</div>","<% } %>"]),error:p.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,g.default)("There was an error getting the data for this dataset"),": <%- model.error %>","</div>","<% } %>"]),purged:p.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,g.default)("This dataset has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:p.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,g.default)("This dataset has been deleted"),"</div>","<% } %>"])}),i=p.default.wrapTemplate(['<div class="details">','<div class="summary"></div>','<div class="actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !dataset.deleted && !dataset.purged ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="display-applications"></div>',"<% if( dataset.peek ){ %>",'<pre class="dataset-peek"><%= dataset.peek %></pre>',"<% } %>","<% } %>","</div>"],"dataset"),n=p.default.wrapTemplate(['<div class="details">','<div class="summary">',(0,g.default)("You do not have permission to view this dataset"),"</div>","</div>"],"dataset"),s={};s[c.default.OK]=s[c.default.FAILED_METADATA]=p.default.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'<div class="blurb">','<span class="value"><%- dataset.misc_blurb %></span>',"</div>","<% } %>","<% if( dataset.file_ext ){ %>",'<div class="datatype">','<label class="prompt">',(0,g.default)("format"),"</label>",'<span class="value"><%- dataset.file_ext %></span>',"</div>","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'<div class="dbkey">','<label class="prompt">',(0,g.default)("database"),"</label>",'<span class="value">',"<%- dataset.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( dataset.misc_info ){ %>",'<div class="info">','<span class="value"><%- dataset.misc_info %></span>',"</div>","<% } %>"],"dataset"),s[c.default.NEW]=p.default.wrapTemplate(["<div>",(0,g.default)("This 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this.key=e.key,this._initStorage(),this.maxSize=e.maxSize||s.defaultOptions.maxSize,this},s.prototype._hasStorage=function(){try{return localStorage.setItem("test","test"),localStorage.removeItem("test"),!0}catch(e){return!1}},s.prototype._initStorage=function(){return null===localStorage.getItem(this.key)?this.empty():this},s.prototype.add=function(e){var t=this,i=t._fetchAndParse(),n=i.length+1-t.maxSize;return n>0&&i.splice(0,n),i.push(e),t._unparseAndStore(i),i.length},s.prototype._fetchAndParse=function(){var e=this;return JSON.parse(localStorage.getItem(e.key))},s.prototype._unparseAndStore=function(e){var t=this;return localStorage.setItem(t.key,JSON.stringify(e))},s.prototype.length=function(){return this._fetchAndParse().length},s.prototype.get=function(e){return this._fetchAndParse().slice(0,e)},s.prototype.remove=function(e){var t=this._fetchAndParse(),i=t.splice(0,e);return this._unparseAndStore(t),i},s.prototype.empty=function(){return localStorage.setItem(this.key,"[]"),this},s.prototype.stringify=function(e){return JSON.stringify(this.get(e))},s.prototype.print=function(){console.log(JSON.stringify(this._fetchAndParse(),null,"  "))},t.default={MetricsLogger:i,LoggingCache:s}}).call(t,i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(33),l=a(o),r=i(22),d=a(r),c=i(8),u=a(c),h=i(4),f=a(h),p=e.View.extend({el:"body",className:"full-content",_panelids:["left","right"],initialize:function(t){var i=this;this.config=n.defaults(t.config||{},{message_box_visible:!1,message_box_content:"",message_box_class:"info",show_inactivity_warning:!1,inactivity_box_content:""}),Galaxy.modal=this.modal=new u.default.View,Galaxy.display=this.display=function(e){e.title?(f.default.setWindowTitle(e.title),e.allow_title_display=!1):(f.default.setWindowTitle(),e.allow_title_display=!0),i.center.display(e)},Galaxy.router=this.router=t.Router&&new t.Router(i,t),this.masthead=new l.default.View(this.config),this.center=new d.default.CenterPanel,this.$el.attr("scroll","no"),this.$el.html(this._template()),this.$("#masthead").replaceWith(this.masthead.$el),this.$("#center").append(this.center.$el),this.$el.append(this.masthead.frame.$el),this.$el.append(this.modal.$el),this.$messagebox=this.$("#messagebox"),this.$inactivebox=this.$("#inactivebox"),this.panels={},n.each(this._panelids,function(e){var n=e.charAt(0).toUpperCase()+e.slice(1),s=t[n];if(s){var a=new s(i,t);i[a.toString()]=a,i.panels[e]=new d.default.SidePanel({id:e,el:i.$("#"+e),view:a})}}),this.render(),this.router&&e.history.start({root:Galaxy.root,pushState:!0})},render:function(){return s(".select2-hidden-accessible").remove(),this.masthead.render(),this.renderMessageBox(),this.renderInactivityBox(),this.renderPanels(),this._checkCommunicationServerOnline(),this},renderMessageBox:function(){if(this.config.message_box_visible){var e=this.config.message_box_content||"",t=this.config.message_box_class||"info";this.$el.addClass("has-message-box"),this.$messagebox.attr("class","panel-"+t+"-message").html(e).toggle(!!e).show()}else this.$el.removeClass("has-message-box"),this.$messagebox.hide();return this},renderInactivityBox:function(){if(this.config.show_inactivity_warning){var e=this.config.inactivity_box_content||"",t=s("<a/>").attr("href",Galaxy.root+"user/resend_verification").text("Resend verification");this.$el.addClass("has-inactivity-box"),this.$inactivebox.html(e+" ").append(t).toggle(!!e).show()}else this.$el.removeClass("has-inactivity-box"),this.$inactivebox.hide();return this},renderPanels:function(){var e=this;return n.each(this._panelids,function(t){var i=e.panels[t];i?i.render():(e.$("#center").css(t,0),e.$("#"+t).hide())}),this},_template:function(){return['<div id="everything">','<div id="background"/>','<div id="masthead"/>','<div id="messagebox"/>','<div id="inactivebox" class="panel-warning-message" />','<div id="left" />','<div id="center" />','<div id="right" />',"</div>",'<div id="dd-helper" />'].join("")},toString:function(){return"PageLayoutView"},_checkCommunicationServerOnline:function(){var e=window.Galaxy.config.communication_server_host,t=window.Galaxy.config.communication_server_port,i=window.Galaxy.user.attributes.preferences,n=s("#show-chat-online");i&&-1!=["1","true"].indexOf(i.communication_server)?s.ajax({url:e+":"+t}).success(function(e){null!==window.Galaxy.user.id&&"hidden"===n.css("visibility")&&n.css("visibility","visible")}).error(function(e){n.css("visibility","hidden")}):n.css("visibility","hidden")}});t.default={View:p}}).call(t,i(2),i(1),i(0))},,,function(e,t,i){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var i=e.Model.extend({defaults:{extension:"auto",genome:"?",url_paste:"",status:"init",info:null,file_name:"",file_mode:"",file_size:0,file_type:null,file_path:"",file_data:null,percentage:0,space_to_tab:!1,to_posix_lines:!0,enabled:!0},reset:function(e){this.clear().set(this.defaults).set(e)}}),n=e.Collection.extend({model:i});t.default={Model:i,Collection:n}}).call(t,i(2))},,,,,,,,,,function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(5),o=s(a),l=i(3),r=s(l),d=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"tags-display",select_width:"100%",events:{},initialize:function(e){this.show_editor=!1,!1===e.usePrompt?this.label="":this.label='<label 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27:this.hideEditor()}},showEditor:function(){this.show_editor=!0,this.render()},hideEditor:function(){this.show_editor=!1,this.render()},_renderEditor:function(){return'<input class="tags-input" value="'+this.tagsToCSV()+'"/>'},_renderTags:function(){var e=this.model.get("tags"),t=Galaxy.root+"static/images/fugue/tag--plus.png",i=[];return n.each(e,function(e){e=0==e.indexOf("name:")?e.slice(5):e;var t='<span class="label label-info">'+e+"</span>";i.push(t)}),0===i.length&&i.push("<img src="+t+' class="add-tag-button" title="Add tags"/>'),i.join(" ")},tagsToCSV:function(){var e=this,t=this.model.get("tags");return!n.isArray(t)||n.isEmpty(t)?"":t.map(function(t){return n.escape(e._nameToHash(t))}).sort().join(",")},$input:function(){return this.$el.find("input.tags-input")},_getTagsUsed:function(){var e=this;return n.map(Galaxy.user.get("tags_used"),e._nameToHash)},_setUpBehaviors:function(){var e=this;this.$input().on("change",function(t){t.val=n.map(t.val,e._hashToName),e.model.save({tags:t.val}),t.added&&e._addNewTagToTagsUsed(""+t.added.text)})},_addNewTagToTagsUsed:function(e){var t=Galaxy.user.get("tags_used");n.contains(t,e)||(t.push(e),t.sort(),Galaxy.user.set("tags_used",t))},remove:function(){this.$input.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["TagsEditor(",""+this.model,")"].join("")}});t.default={TagsEditor:d}}).call(t,i(2),i(1))},,,,,,,,,,,,,,function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(0),a=n(s),o=i(14),l=n(o),r=i(6),d=n(r),c=a.default,u=e.Router.extend({initialize:function(e,t){this.page=e,this.options=t},push:function(e,t){t=t||{},t.__identifer=Math.random().toString(36).substr(2),c.isEmptyObject(t)||(e+=-1==e.indexOf("?")?"?":"&",e+=c.param(t,!0)),Galaxy.params=t,this.navigate(e,{trigger:!0})},execute:function(e,t,i){Galaxy.debug("router execute:",e,t,i);var n=l.default.parse(t.pop());t.push(n),e&&(this.authenticate(t,i)?e.apply(this,t):this.access_denied())},authenticate:function(e,t){return!0},access_denied:function(){this.page.display(new d.default.Message({status:"danger",message:"You must be logged in with proper credentials to make this request.",persistent:!0}))}});t.default=u}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n,s){Object.defineProperty(t,"__esModule",{value:!0});var a=i(4);!function(e){e&&e.__esModule}(a);t.default=e.View.extend({options:{class_check:"fa-check-square-o",class_uncheck:"fa-square-o",parameters:[{id:"space_to_tab",title:"Convert spaces to tabs"},{id:"to_posix_lines",title:"Use POSIX standard"}]},initialize:function(e){this.model=e.model,this.setElement(n("<div/>").addClass("upload-settings")),this.$el.append(n("<div/>").addClass("upload-settings-cover")),this.$el.append(n("<table/>").addClass("upload-settings-table ui-table-striped").append("<tbody/>")),this.$cover=this.$(".upload-settings-cover"),this.$table=this.$(".upload-settings-table > tbody"),this.listenTo(this.model,"change",this.render,this),this.model.trigger("change")},render:function(){var e=this;this.$table.empty(),s.each(this.options.parameters,function(t){var i=n("<div/>").addClass("upload-"+t.id+" upload-icon-button 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float: left;">Available files: </span><span style="whitespace: nowrap; float: right;"><span class="upload-icon fa fa-file-text-o"/><span class="upload-ftp-number"/>&nbsp;&nbsp;<span class="upload-icon fa fa-hdd-o"/><span class="upload-ftp-disk"/></span><table class="grid" style="float: left;"><thead><tr><th class="_has_collection" style="display: none;"><div class="upload-ftp-select-all"></th><th>Name</th><th>Size</th><th>Created</th></tr></thead><tbody class="upload-ftp-body"/></table></div><div class="upload-ftp-warning warningmessage">Your FTP directory does not contain any files.</div>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(4),o=(s(a),i(15)),l=s(o);t.default=e.View.extend({initialize:function(t){this.model=new e.Model(t),this.setElement("<div/>"),this.render()},render:function(){var e=this.model.attributes,t=n.findWhere(e.list,{id:e.extension});this.extension_popup&&this.extension_popup.remove(),this.extension_popup=new l.default.View({placement:e.placement||"bottom",container:e.$el}),this.extension_popup.title(e.title),this.extension_popup.empty(),this.extension_popup.append(this._templateDescription(t)),this.extension_popup.show()},_templateDescription:function(e){if(e.description){var t=e.description;return e.description_url&&(t+='&nbsp;(<a href="'+e.description_url+'" target="_blank">read more</a>)'),t}return"There is no description available for this file extension."}})}).call(t,i(2),i(1))},function(e,t,i){"use strict";(function(e,t){!function(i){e.event.props.push("dataTransfer"),i.uploadpost=function(t){var n=i.extend({},{data:{},success:function(){},error:function(){},progress:function(){},url:null,maxfilesize:2048,error_filesize:"File exceeds 2GB. 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",(0,w.default)("You may need to "),'<a class="cancel-create" href="javascript:void(0)">',(0,w.default)("cancel"),"</a> ",(0,w.default)("and reselect new elements"),".","</span>","</div>","</div>",'<div class="footer flex-row no-flex">','<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,w.default)("Cancel"),"</button>","</div>","</div>","</div>"].join(""))}),toString:function(){return"ListCollectionCreator"}}),C=function(e,t,i){var s,o=a.Deferred(),l=Galaxy.modal||new _.default.View;return t=n.defaults(t||{},{elements:e,oncancel:function(){l.hide(),o.reject("cancelled")},oncreate:function(e,t){l.hide(),o.resolve(t)}}),s=new i(t),l.show({title:t.title||(0,w.default)("Create a collection"),body:s.$el,width:"80%",height:"100%",closing_events:!0}),s.render(),window._collectionCreator=s,o},$=function(e,t){return t=t||{},t.title=(0,w.default)("Create a collection from a list of 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this.attributes.collection_type.indexOf(":")>0?v:m},initialize:function(e,t){this.debug(this+"(DatasetCollection).initialize:",e,t,this),this.elements=this._createElementsModel(),this.on("change:elements",function(){this.log("change:elements"),this.elements=this._createElementsModel()})},_createElementsModel:function(){var t=this.collectionClass();this.debug(this+"._createElementsModel",t,this.get("elements"),this.elements);var i=this.get("elements")||[];this.unset("elements",{silent:!0});var n=this;return e.each(i,function(t,i){e.extend(t,{parent_hdca_id:n.get("id")})}),this.elements=new t(i),this.elements},toJSON:function(){var e=n.Model.prototype.toJSON.call(this);return this.elements&&(e.elements=this.elements.toJSON()),e},inReadyState:function(){var e=this.get("populated");return this.isDeletedOrPurged()||e},hasDetails:function(){return 0!==this.elements.length},getVisibleContents:function(e){return this.elements},parse:function(e,t){var i=n.Model.prototype.parse.call(this,e,t);return i.create_time&&(i.create_time=new Date(i.create_time)),i.update_time&&(i.update_time=new Date(i.update_time)),i},delete:function(e){return this.get("deleted")?s.when():this.save({deleted:!0},e)},undelete:function(e){return!this.get("deleted")||this.get("purged")?s.when():this.save({deleted:!1},e)},isDeletedOrPurged:function(){return this.get("deleted")||this.get("purged")},searchAttributes:["name","tags"],toString:function(){return"DatasetCollection("+[this.get("id"),this.get("name")||this.get("element_identifier")].join(",")+")"}}),_=g.extend(d.default.mixin(u,{constructor:function(e,t){this.debug("\t 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i={details:"all"};return t.data=e.extend(t.data||{},i),this.fetch(t)},_filterAndUpdate:function(e,t){var i=this,n=i.model.prototype.idAttribute,s=[t];return i.fetch({filters:e,remove:!1}).then(function(e){return e=e.reduce(function(e,t,s){var a=i.get(t[n]);return a?e.concat(a):e},[]),i.ajaxQueue("save",s,e)})},ajaxQueue:function(t,i,n){return n=n||this.models,new y.default.AjaxQueue(n.slice().reverse().map(function(n,s){var a=e.isString(t)?n[t]:t;return function(){return a.apply(n,i)}})).deferred},progressivelyFetchDetails:function(t){function i(n){n=n||0;var l=e.extend(e.clone(t),{view:"summary",keys:r,limit:o,offset:n,reset:0===n,remove:!1});e.defer(function(){a.fetch.call(a,l).fail(s.reject).done(function(e){s.notify(e,o,n),e.length!==o?(a.allFetched=!0,s.resolve(e,o,n)):i(n+o)})})}t=t||{};var s=n.Deferred(),a=this,o=t.limitPerCall||a.limitPerProgressiveFetch,l=d.default.HistoryDatasetAssociation.prototype.searchAttributes,r=l.join(",");return i(),s},isCopyable:function(t){var 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l=i(5),r=o(l),d=i(3),c=(o(d),e.View.extend(r.default.LoggableMixin).extend({_logNamespace:"list",initialize:function(e){this.expanded=e.expanded||!1,this.log("\t expanded:",this.expanded),this.fxSpeed=void 0!==e.fxSpeed?e.fxSpeed:this.fxSpeed},fxSpeed:"fast",render:function(e){var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){var e=n(this.templates.el(this.model.toJSON(),this));return this.expanded&&this.$details(e).replaceWith(this._renderDetails().show()),e},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;0===t?(i._swapNewRender(e),i.trigger("rendered",i)):n(i).queue("fx",[function(e){i.$el.fadeOut(t,e)},function(t){i._swapNewRender(e),t()},function(e){i.$el.fadeIn(t,e)},function(e){i.trigger("rendered",i),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",s.isFunction(this.className)?this.className():this.className).append(e.children())},_setUpBehaviors:function(e){e=e||this.$el,e.find("[title]").tooltip({placement:"bottom"})},$details:function(e){return e=e||this.$el,e.find("> .details")},_renderDetails:function(){var e=n(this.templates.details(this.model.toJSON(),this));return this._setUpBehaviors(e),e},toggleExpanded:function(e){return e=void 0===e?!this.expanded:e,e?this.expand():this.collapse(),this},expand:function(){var e=this;return e._fetchModelDetails().always(function(){e._expand()})},_fetchModelDetails:function(){return this.model.hasDetails()?a.when():this.model.fetch()},_expand:function(){var e=this,t=e._renderDetails();e.$details().replaceWith(t),e.expanded=!0,e.$details().slideDown(e.fxSpeed,function(){e.trigger("expanded",e)})},collapse:function(){this.debug(this+"(ExpandableView).collapse");var e=this;e.expanded=!1,this.$details().slideUp(e.fxSpeed,function(){e.trigger("collapsed",e)})}})),u=c.extend(r.default.mixin(r.default.SelectableViewMixin,r.default.DraggableViewMixin,{tagName:"div",className:"list-item",initialize:function(e){c.prototype.initialize.call(this,e),r.default.SelectableViewMixin.initialize.call(this,e),r.default.DraggableViewMixin.initialize.call(this,e),this._setUpListeners()},_setUpListeners:function(){return this.on("selectable",function(e){e?this.$(".primary-actions").hide():this.$(".primary-actions").show()},this),this},_buildNewRender:function(){var e=c.prototype._buildNewRender.call(this);return e.children(".warnings").replaceWith(this._renderWarnings()),e.children(".title-bar").replaceWith(this._renderTitleBar()),e.children(".primary-actions").append(this._renderPrimaryActions()),e.find("> .title-bar .subtitle").replaceWith(this._renderSubtitle()),e},_swapNewRender:function(e){return c.prototype._swapNewRender.call(this,e),this.selectable&&this.showSelector(0),this.draggable&&this.draggableOn(),this.$el},_renderWarnings:function(){var e=this,t=n('<div class="warnings"></div>'),i=e.model.toJSON();return s.each(e.templates.warnings,function(s){t.append(n(s(i,e)))}),t},_renderTitleBar:function(){return n(this.templates.titleBar(this.model.toJSON(),this))},_renderPrimaryActions:function(){return[]},_renderSubtitle:function(){return n(this.templates.subtitle(this.model.toJSON(),this))},events:{"click .title-bar":"_clickTitleBar","keydown .title-bar":"_keyDownTitleBar","click .selector":"toggleSelect"},_clickTitleBar:function(e){e.stopPropagation(),e.altKey?(this.toggleSelect(e),this.selectable||this.showSelector()):this.toggleExpanded()},_keyDownTitleBar:function(e){return!e||"keydown"!==e.type||32!==e.keyCode&&13!==e.keyCode||(this.toggleExpanded(),e.stopPropagation(),!1)},toString:function(){return"ListItemView("+(this.model?""+this.model:"(no model)")+")"}}));u.prototype.templates=function(){return{el:r.default.wrapTemplate(['<div class="list-element">','<div class="warnings"></div>','<div class="selector">','<span class="fa fa-2x fa-square-o"></span>',"</div>",'<div class="primary-actions"></div>','<div class="title-bar"></div>','<div class="details"></div>',"</div>"]),warnings:{},titleBar:r.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.name %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element"),subtitle:r.default.wrapTemplate(['<div class="subtitle"></div>']),details:r.default.wrapTemplate(['<div class="details"></div>'])}}();var h=u.extend({foldoutStyle:"foldout",foldoutPanelClass:null,initialize:function(e){"drilldown"===this.foldoutStyle&&(this.expanded=!1),this.foldoutStyle=e.foldoutStyle||this.foldoutStyle,this.foldoutPanelClass=e.foldoutPanelClass||this.foldoutPanelClass,u.prototype.initialize.call(this,e),this.foldout=this._createFoldoutPanel()},_renderDetails:function(){if("drilldown"===this.foldoutStyle)return n();var e=u.prototype._renderDetails.call(this);return this._attachFoldout(this.foldout,e)},_createFoldoutPanel:function(){var e=this.model,t=this._getFoldoutPanelClass(e),i=this._getFoldoutPanelOptions(e);return new t(s.extend(i,{model:e}))},_getFoldoutPanelClass:function(){return this.foldoutPanelClass},_getFoldoutPanelOptions:function(){return{foldoutStyle:this.foldoutStyle,fxSpeed:this.fxSpeed}},_attachFoldout:function(e,t){return t=t||this.$("> .details"),this.foldout=e.render(0),e.$("> .controls").hide(),t.append(e.$el)},expand:function(){var e=this;return e._fetchModelDetails().always(function(){"foldout"===e.foldoutStyle?e._expand():"drilldown"===e.foldoutStyle&&e._expandByDrilldown()})},_expandByDrilldown:function(){var e=this;e.listenTo(e.foldout,"close",function(){e.trigger("collapsed:drilldown",e,e.foldout)}),e.trigger("expanded:drilldown",e,e.foldout)}});h.prototype.templates=function(){var e=r.default.wrapTemplate(['<div class="details">',"</div>"],"collection");return s.extend({},u.prototype.templates,{details:e})}(),t.default={ExpandableView:c,ListItemView:u,FoldoutListItemView:h}}).call(t,i(2),i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var l=i(65),r=o(l),d=i(16),c=o(d),u=i(21),h=o(u),f=i(5),p=o(f),m=i(3),g=o(m),_=r.default.ListItemView,v=_.extend({_logNamespace:"dataset",className:_.prototype.className+" dataset",id:function(){return["dataset",this.model.get("id")].join("-")},initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log(this+".initialize:",e),_.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_setUpListeners:function(){_.prototype._setUpListeners.call(this);var t=this;return t.listenTo(t.model,{change:function(i){t.model.changedAttributes().state&&t.model.inReadyState()&&t.expanded&&!t.model.hasDetails()?t.model.fetch({silent:!0}).done(function(){t.render()}):e.has(i.changed,"tags")&&1===e.keys(i.changed).length?t.$(".nametags").html(t._renderNametags()):t.render()}})},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):n.when()},remove:function(e,t){var i=this;e=e||this.fxSpeed,this.$el.fadeOut(e,function(){s.View.prototype.remove.call(i),t&&t.call(i)})},_swapNewRender:function(e){return _.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var e=this.model.get("state");if(e===c.default.NOT_VIEWABLE||e===c.default.DISCARDED||!this.model.get("accessible"))return null;var t={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))t.disabled=!0,t.title=(0,g.default)("Cannot display datasets removed from disk");else if(e===c.default.UPLOAD)t.disabled=!0,t.title=(0,g.default)("This dataset must finish uploading before it can be viewed");else if(e===c.default.NEW)t.disabled=!0,t.title=(0,g.default)("This dataset is not yet viewable");else{t.title=(0,g.default)("View data"),t.href=this.model.urls.display;var i=this;t.onclick=function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.addDataset(i.model.get("id")),e.preventDefault())}}return t.faIcon="fa-eye",(0,h.default)(t)},_renderDetails:function(){if(this.model.get("state")===c.default.NOT_VIEWABLE)return a(this.templates.noAccess(this.model.toJSON(),this));var e=_.prototype._renderDetails.call(this);return e.find(".actions .left").empty().append(this._renderSecondaryActions()),e.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),e.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(e),e},_renderSummary:function(){var e=this.model.toJSON(),t=this.templates.summaries[e.state];return(t=t||this.templates.summaries.unknown)(e,this)},_renderDetailMessages:function(){var t=this,i=a('<div class="detail-messages"></div>'),n=t.model.toJSON();return e.each(t.templates.detailMessages,function(e){i.append(a(e(n,t)))}),i},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case c.default.NOT_VIEWABLE:return[];case c.default.OK:case c.default.FAILED_METADATA:case c.default.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return(0,h.default)({title:(0,g.default)("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle",onclick:function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,g.default)("Dataset details"),url:this.href}),e.preventDefault(),e.stopPropagation())}})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:e.isEmpty(this.model.get("meta_files"))?a(['<a class="download-btn icon-btn" ','href="',this.model.urls.download,'" title="'+(0,g.default)("Download")+'" download>','<span class="fa fa-floppy-o"></span>',"</a>"].join("")):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var t=this.model.urls;return a(['<div class="metafile-dropdown dropdown">','<a class="download-btn icon-btn" href="javascript:void(0)" data-toggle="dropdown"',' title="'+(0,g.default)("Download")+'">','<span class="fa fa-floppy-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu" aria-labelledby="dLabel">','<li><a href="'+t.download+'" download>',(0,g.default)("Download dataset"),"</a></li>",e.map(this.model.get("meta_files"),function(e){return['<li><a href="',t.meta_download+e.file_type,'">',(0,g.default)("Download")," ",e.file_type,"</a></li>"].join("")}).join("\n"),"</ul>","</div>"].join("\n"))},_renderNametags:function(){return e.template(["<% _.each(_.sortBy(_.uniq(tags), function(x) { return x }), function(tag){ %>",'<% if (tag.indexOf("name:") == 0){ %>','<span class="label label-info"><%- tag.slice(5) %></span>',"<% } %>","<% }); %>"].join(""))({tags:this.model.get("tags")})},events:e.extend(e.clone(_.prototype.events),{"click .display-btn":function(e){this.trigger("display",this,e)},"click .params-btn":function(e){this.trigger("params",this,e)},"click .download-btn":function(e){this.trigger("download",this,e)}}),toString:function(){return"DatasetListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=e.extend({},_.prototype.templates.warnings,{failed_metadata:p.default.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','<div class="warningmessagesmall">',(0,g.default)("An error occurred setting the metadata for this dataset"),"</div>","<% } %>"]),error:p.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,g.default)("There was an error getting the data for this dataset"),": <%- model.error %>","</div>","<% } %>"]),purged:p.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,g.default)("This dataset has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:p.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,g.default)("This dataset has been deleted"),"</div>","<% } %>"])}),i=p.default.wrapTemplate(['<div class="details">','<div class="summary"></div>','<div class="actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !dataset.deleted && !dataset.purged ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="display-applications"></div>',"<% if( dataset.peek ){ %>",'<pre class="dataset-peek"><%= dataset.peek %></pre>',"<% } %>","<% } %>","</div>"],"dataset"),n=p.default.wrapTemplate(['<div class="details">','<div class="summary">',(0,g.default)("You do not have permission to view this dataset"),"</div>","</div>"],"dataset"),s={};s[c.default.OK]=s[c.default.FAILED_METADATA]=p.default.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'<div class="blurb">','<span class="value"><%- dataset.misc_blurb %></span>',"</div>","<% } %>","<% if( dataset.file_ext ){ %>",'<div class="datatype">','<label class="prompt">',(0,g.default)("format"),"</label>",'<span class="value"><%- dataset.file_ext %></span>',"</div>","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'<div class="dbkey">','<label class="prompt">',(0,g.default)("database"),"</label>",'<span class="value">',"<%- dataset.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( dataset.misc_info ){ %>",'<div class="info">','<span class="value"><%- dataset.misc_info %></span>',"</div>","<% } %>"],"dataset"),s[c.default.NEW]=p.default.wrapTemplate(["<div>",(0,g.default)("This is a new dataset and not all of its data are available yet"),"</div>"],"dataset"),s[c.default.NOT_VIEWABLE]=p.default.wrapTemplate(["<div>",(0,g.default)("You do not have permission to view this dataset"),"</div>"],"dataset"),s[c.default.DISCARDED]=p.default.wrapTemplate(["<div>",(0,g.default)("The job creating this dataset was cancelled before completion"),"</div>"],"dataset"),s[c.default.QUEUED]=p.default.wrapTemplate(["<div>",(0,g.default)("This job is waiting to run"),"</div>"],"dataset"),s[c.default.RUNNING]=p.default.wrapTemplate(["<div>",(0,g.default)("This job is currently running"),"</div>"],"dataset"),s[c.default.UPLOAD]=p.default.wrapTemplate(["<div>",(0,g.default)("This dataset is currently uploading"),"</div>"],"dataset"),s[c.default.SETTING_METADATA]=p.default.wrapTemplate(["<div>",(0,g.default)("Metadata is being auto-detected"),"</div>"],"dataset"),s[c.default.PAUSED]=p.default.wrapTemplate(["<div>",(0,g.default)('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"</div>"],"dataset"),s[c.default.ERROR]=p.default.wrapTemplate(["<% if( !dataset.purged ){ %>","<div><%- dataset.misc_blurb %></div>","<% } %>",'<span class="help-text">',(0,g.default)("An error occurred with this dataset"),":</span>",'<div class="job-error-text"><%- dataset.misc_info %></div>'],"dataset"),s[c.default.EMPTY]=p.default.wrapTemplate(["<div>",(0,g.default)("No data"),": <i><%- dataset.misc_blurb %></i></div>"],"dataset"),s.unknown=p.default.wrapTemplate(['<div>Error: unknown dataset state: "<%- dataset.state %>"</div>'],"dataset");var a={resubmitted:p.default.wrapTemplate(["<% if( model.resubmitted ){ %>",'<div class="resubmitted-msg infomessagesmall">',(0,g.default)("The job creating this dataset has been resubmitted"),"</div>","<% } %>"])},o=p.default.wrapTemplate(["<% _.each( apps, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%- link.target %>" href="<%- link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>"],"apps");return e.extend({},_.prototype.templates,{warnings:t,details:i,noAccess:n,summaries:s,detailMessages:a,displayApplications:o})}(),t.default={DatasetListItemView:v}}).call(t,i(1),i(0),i(2),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(65),l=a(o),r=i(66),d=a(r),c=i(5),u=a(c),h=i(3),f=a(h),p=l.default.FoldoutListItemView,m=l.default.ListItemView,g=p.extend({className:p.prototype.className+" dataset-collection",id:function(){return["dataset_collection",this.model.get("id")].join("-")},initialize:function(e){this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,p.prototype.initialize.call(this,e)},_setUpListeners:function(){p.prototype._setUpListeners.call(this),this.listenTo(this.model,"change",function(t,i){e.has(t.changed,"deleted")?this.render():e.has(t.changed,"element_count")&&this.$("> .title-bar .subtitle").replaceWith(this._renderSubtitle())})},_renderSubtitle:function(){return n(this.templates.subtitle(this.model.toJSON(),this))},_getFoldoutPanelOptions:function(){var t=p.prototype._getFoldoutPanelOptions.call(this);return e.extend(t,{linkTarget:this.linkTarget,hasUser:this.hasUser})},$selector:function(){return this.$("> .selector")},toString:function(){return"DCListItemView("+(this.model?""+this.model:"(no model)")+")"}});g.prototype.templates=function(){var t=e.extend({},p.prototype.templates.warnings,{error:u.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,f.default)("There was an error getting the data for this collection"),": <%- model.error %>","</div>","<% } %>"]),purged:u.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,f.default)("This collection has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:u.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,f.default)("This collection has been deleted"),"</div>","<% } %>"])}),i=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<div class="title">','<span class="name"><%- collection.element_identifier || collection.name %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"collection"),n=u.default.wrapTemplate(['<div class="subtitle">','<% var countText = collection.element_count? ( collection.element_count + " " ) : ""; %>','<%        if( collection.collection_type === "list" ){ %>',(0,f.default)("a list of <%- countText %>datasets"),'<% } else if( collection.collection_type === "paired" ){ %>',(0,f.default)("a pair of datasets"),'<% } else if( collection.collection_type === "list:paired" ){ %>',(0,f.default)("a list of <%- countText %>dataset pairs"),'<% } else if( collection.collection_type === "list:list" ){ %>',(0,f.default)("a list of <%- countText %>dataset lists"),"<% } %>","</div>"],"collection");return e.extend({},p.prototype.templates,{warnings:t,titleBar:i,subtitle:n})}();var _=m.extend({className:m.prototype.className+" dataset-collection-element",initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log("DCEListItemView.initialize:",e),m.prototype.initialize.call(this,e)},toString:function(){return"DCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});_.prototype.templates=function(){var t=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<div class="title">','<span class="name"><%- element.element_identifier %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element");return e.extend({},m.prototype.templates,{titleBar:t})}();var v=d.default.DatasetListItemView.extend({className:d.default.DatasetListItemView.prototype.className+" dataset-collection-element",initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log("DatasetDCEListItemView.initialize:",e),d.default.DatasetListItemView.prototype.initialize.call(this,e)},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):s.when()},toString:function(){return"DatasetDCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.element_identifier %></span>',"</div>","</div>"],"element");return e.extend({},d.default.DatasetListItemView.prototype.templates,{titleBar:t})}();var y=g.extend({className:g.prototype.className+" dataset-collection-element",_swapNewRender:function(e){g.prototype._swapNewRender.call(this,e);var t=this.model.get("state")||"ok";return this.$el.addClass("state-"+t),this.$el},toString:function(){return"NestedDCDCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});t.default={DCListItemView:g,DCEListItemView:_,DatasetDCEListItemView:v,NestedDCDCEListItemView:y}}).call(t,i(1),i(0),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(11),o=s(a),l=i(6),r=s(l),d=e.View.extend({initialize:function(t){this.model=new e.Model(t),this.url=this.model.get("url"),this.redirect=this.model.get("redirect"),this.setElement("<div/>"),this.render()},render:function(){var e=this;n.ajax({url:Galaxy.root+this.url,type:"GET"}).done(function(t){var i=n.extend({},e.model.attributes,t),s=new o.default({title:i.title,message:i.message,status:i.status||"warning",icon:i.icon,initial_errors:!0,errors:i.errors,inputs:i.inputs,buttons:{submit:new r.default.Button({tooltip:i.submit_tooltip,title:i.submit_title||"Save",icon:i.submit_icon||"fa-save",cls:"btn btn-primary ui-clear-float",onclick:function(){e._submit(s)}})}});e.$el.empty().append(s.$el)}).fail(function(t){e.$el.empty().append(new r.default.Message({message:"Failed to load resource "+e.url+".",status:"danger",persistent:!0}).$el)})},_submit:function(e){var t=this;n.ajax({url:Galaxy.root+t.url,data:JSON.stringify(e.data.create()),type:"PUT",contentType:"application/json"}).done(function(i){var s={};i.id?s.id=i.id:s={message:i.message,status:"success",persistent:!1},t.redirect?window.location=Galaxy.root+t.redirect+"?"+n.param(s):(e.data.matchModel(i,function(t,i){e.field_list[i].value(t.value)}),t._showMessage(e,success_message))}).fail(function(i){t._showMessage(e,{message:i.responseJSON.err_msg,status:"danger",persistent:!1})})},_showMessage:function(e,t){e.$el.parents().filter(function(){return-1!=["auto","scroll"].indexOf(n(this).css("overflow"))}).first().animate({scrollTop:0},500),e.message.update(t)}});t.default={View:d}}).call(t,i(2),i(0))},,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(16),l=a(o),r=i(5),d=a(r),c=i(3),u=a(c),h=d.default.SearchableModelMixin,f=e.Model.extend(d.default.LoggableMixin).extend(d.default.mixin(h,{_logNamespace:"dataset",defaults:{state:l.default.NEW,deleted:!1,purged:!1,name:"(unnamed dataset)",accessible:!0,data_type:"",file_ext:"",file_size:0,meta_files:[],misc_blurb:"",misc_info:"",tags:[]},initialize:function(e,t){this.debug(this+"(Dataset).initialize",e,t),
 //!! this state is not in trans.app.model.Dataset.states - set it here -
-this.get("accessible")||this.set("state",r.default.NOT_VIEWABLE),this.urls=this._generateUrls(),this._setUpListeners()},_generateUrls:function(){var e=this.get("id");if(!e)return{};var t={purge:"datasets/"+e+"/purge_async",display:"datasets/"+e+"/display/?preview=True",edit:"datasets/edit?dataset_id="+e,download:"datasets/"+e+"/display"+this._downloadQueryParameters(),report_error:"dataset/errors?id="+e,rerun:"tool_runner/rerun?id="+e,show_params:"datasets/"+e+"/show_params",visualization:"visualization",meta_download:"dataset/get_metadata_file?hda_id="+e+"&metadata_name="};return n.each(t,function(e,i){t[i]=Galaxy.root+e}),this.urls=t,t},_downloadQueryParameters:function(){return"?to_ext="+this.get("file_ext")},_setUpListeners:function(){this.on("change:state",function(e,t){this.log(this+" has changed state:",e,t),this.inReadyState()&&this.trigger("state:ready",e,t,this.previous("state"))}),this.on("change:id change:file_ext",function(e){this._generateUrls()})},toJSON:function(){var t=e.Model.prototype.toJSON.call(this);return n.extend(t,{urls:this.urls})},isDeletedOrPurged:function(){return this.get("deleted")||this.get("purged")},inReadyState:function(){var e=n.contains(r.default.READY_STATES,this.get("state"));return this.isDeletedOrPurged()||e},hasDetails:function(){return!this.get("accessible")||this.has("annotation")},hasData:function(){return this.get("file_size")>0},fetch:function(t){var i=this;return e.Model.prototype.fetch.call(this,t).always(function(){i._generateUrls()})},parse:function(t,i){var n=e.Model.prototype.parse.call(this,t,i);return n.create_time&&(n.create_time=new Date(n.create_time)),n.update_time&&(n.update_time=new Date(n.update_time)),n},save:function(t,i){return i=i||{},i.wait=!!n.isUndefined(i.wait)||i.wait,e.Model.prototype.save.call(this,t,i)},delete:function(e){return this.get("deleted")?s.when():this.save({deleted:!0},e)},undelete:function(e){return!this.get("deleted")||this.get("purged")?s.when():this.save({deleted:!1},e)},purge:function(e){if(this.get("purged"))return s.when();e=e||{},e.url=this.urls.purge;var t=this,i=s.ajax(e);return i.done(function(e,i,n){t.set({deleted:!0,purged:!0})}),i.fail(function(i,n,s){var a=(0,u.default)("Unable to purge dataset");i.responseJSON&&i.responseJSON.error?a=i.responseJSON.error:-1!==i.responseText.indexOf("Removal of datasets by users is not allowed in this Galaxy instance")&&(a="Removal of datasets by users is not allowed in this Galaxy instance"),i.responseText=a,t.trigger("error",t,i,e,(0,u.default)(a),{error:a})}),i},searchAttributes:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],searchAliases:{title:"name",format:"file_ext",database:"genome_build",blurb:"misc_blurb",description:"misc_blurb",info:"misc_info",tag:"tags"},toString:function(){var e=this.get("id")||"";return this.get("name")&&(e='"'+this.get("name")+'",'+e),"Dataset("+e+")"}})),p=e.Collection.extend(d.default.LoggableMixin).extend({_logNamespace:"dataset",model:f,urlRoot:Galaxy.root+"api/datasets",url:function(){return this.urlRoot},ids:function(){return this.map(function(e){return e.get("id")})},notReady:function(){return this.filter(function(e){return!e.inReadyState()})},haveDetails:function(){return this.all(function(e){return e.hasDetails()})},ajaxQueue:function(e,t){var i=s.Deferred(),n=this.length,a=[];if(!n)return i.resolve([]),i;var o=this.chain().reverse().map(function(s,r){return function(){var l=e.call(s,t);l.done(function(e){i.notify({curr:r,total:n,response:e,model:s})}),l.always(function(e){a.push(e),o.length?o.shift()():i.resolve(a)})}}).value();return o.shift()(),i},matches:function(e){return this.filter(function(t){return t.matches(e)})},toString:function(){return["DatasetAssociationCollection(",this.length,")"].join("")}});t.default={DatasetAssociation:f,DatasetAssociationCollection:p}}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(16),a=(n(s),i(5)),o=(n(a),i(4)),r=(n(o),1e3);try{r=localStorage.getItem("collectionFuzzyCountDefault")||r}catch(e){}var l={defaults:{history_id:null,history_content_type:null,hid:null,visible:!0},idAttribute:"type_id",hidden:function(){return!this.get("visible")},isVisible:function(e,t){var i=!0;return e||!this.get("deleted")&&!this.get("purged")||(i=!1),t||this.get("visible")||(i=!1),i},urlRoot:Galaxy.root+"api/histories/",url:function(){var e=this.get("history_content_type"),t=this.get("history_id"),i=this.get("id"),n=""+this.urlRoot+t+"/contents/"+e+"s/"+i;return"dataset_collection"==e&&(n=n+"?view=element-reference&fuzzy_count="+r),n},hide:function(t){return this.get("visible")?this.save({visible:!1},t):e.when()},unhide:function(t){return this.get("visible")?e.when():this.save({visible:!0},t)},toString:function(){return[this.get("type_id"),this.get("hid"),this.get("name")].join(":")}};t.default={HistoryContentMixin:l}}).call(t,i(0))},function(e,t,i){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var i={_validationWarning:function(e,t){"name"===e&&(e=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),t?(e=e||this.$(".validation-warning"),e.removeClass("validation-warning")):e.addClass("validation-warning")},_changeHideOriginals:function(e){this.hideOriginals=this.$(".hide-originals").prop("checked")},_changeName:function(e){this._validationWarning("name",!!this._getName())},_nameCheckForEnter:function(e){13!==e.keyCode||this.blocking||this._clickCreate()},_getName:function(){return e.escape(this.$(".collection-name").val())},_clickMoreHelp:function(e){e.stopPropagation(),this.$(".main-help").addClass("expanded"),this.$(".more-help").hide()},_clickLessHelp:function(e){e.stopPropagation(),this.$(".main-help").removeClass("expanded"),this.$(".more-help").show()},_toggleHelp:function(e){e.stopPropagation(),this.$(".main-help").toggleClass("expanded"),this.$(".more-help").toggle()},_showAlert:function(e,t){t=t||"alert-danger",this.$(".main-help").hide(),this.$(".header .alert").attr("class","alert alert-dismissable").addClass(t).show().find(".alert-message").html(e)},_hideAlert:function(e){this.$(".main-help").show(),this.$(".header .alert").hide()},_cancelCreate:function(e){"function"==typeof this.oncancel&&this.oncancel.call(this)},_clickCreate:function(e){var t=this._getName();t?this.blocking||this.createList(t):this._validationWarning("name")},_setUpCommonSettings:function(e){this.hideOriginals=e.defaultHideSourceItems||!1},_renderFooter:function(t,i){var n=this,s=this.$(".footer").empty().html(this.templates.footer());return e.each(this.footerSettings,function(e,t){n.$(t).prop("checked",n[e])}),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),s},_creatorTemplates:{main:e.template(['<div class="header flex-row no-flex"></div>','<div class="middle flex-row flex-row-container"></div>','<div class="footer flex-row no-flex"></div>'].join(""))}};t.default={CollectionCreatorMixin:i}}).call(t,i(1))},function(e,t,i){"use strict";function n(e,t){var i=/(-?[0-9\.]+)/g,n=e.toString().toLowerCase()||"",s=t.toString().toLowerCase()||"",a=String.fromCharCode(0),o=n.replace(i,a+"$1"+a).split(a),r=s.replace(i,a+"$1"+a).split(a),l=new Date(n).getTime(),d=l?new Date(s).getTime():null;if(d){if(l<d)return-1;if(l>d)return 1}for(var c,u,h=0,f=Math.max(o.length,r.length);h<f;h++){if(c=parseFloat(o[h])||o[h],u=parseFloat(r[h])||r[h],c<u)return-1;if(c>u)return 1}return 0}Object.defineProperty(t,"__esModule",{value:!0}),t.default=n},function(e,t,i){"use strict";var n=i(0),s=function(e){return e&&e.__esModule?e:{default:e}}(n),a=s.default;s.default.fn.extend({hoverhighlight:function(e,t){return e=e||"body",this.length?(a(this).each(function(){var i=a(this),n=i.data("target");n&&i.mouseover(function(i){a(n,e).css({background:t})}).mouseout(function(e){a(n).css({background:""})})}),this):this}})},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),r=a(o),l=i(87),d=a(l),c=i(6),u=a(c),h=i(11),f=a(h),p=i(90),m=a(p),g=i(45),_=a(g),v=i(8),y=a(v),w=i(34),b=a(w),x=i(61),C=a(x),$=e.View.extend({initialize:function(t){var i=this;this.modal=parent.Galaxy.modal||new y.default.View,this.model=t&&t.model||new e.Model(t),this.deferred=new d.default,this.setElement(n("<div/>").addClass("ui-form-composite").append(this.$message=n("<div/>")).append(this.$header=n("<div/>")).append(this.$steps=n("<div/>"))),n("body").append(this.$el),this._configure(),this.render(),n(window).resize(function(){i._refresh()})},_refresh:function(e){var t=s.reduce(this.$el.children(),function(e,t){return e+n(t).outerHeight()},0)-this.$steps.height()+90;this.$steps.css("height",n(window).height()-t)},_configure:function(){function e(e,n){for(var s,a=/\$\{(.+?)\}/g;s=a.exec(String(e));){var o=s[1];n(t.wp_inputs[o]=t.wp_inputs[o]||{label:o,name:o,type:"text",color:"hsl( "+100*++i+", 70%, 30% )",style:"ui-form-wp-source",links:[]})}}var t=this;this.forms=[],this.steps=[],this.links=[],this.parms=[],s.each(this.model.get("steps"),function(e,i){Galaxy.emit.debug("tool-form-composite::initialize()",i+" : Preparing workflow step.");var n=C.default[e.step_type],a=parseInt(i+1)+": "+(e.step_label||e.step_name);e.annotation&&(a+=" - "+e.annotation),e.step_version&&(a+=" (Galaxy Version "+e.step_version+")"),e=r.default.merge({index:i,fixed_title:s.escape(a),icon:n||"",help:null,citations:null,collapsible:!0,collapsed:i>0&&!t._isDataStep(e),sustain_version:!0,sustain_repeats:!0,sustain_conditionals:!0,narrow:!0,text_enable:"Edit",text_disable:"Undo",cls_enable:"fa fa-edit",cls_disable:"fa fa-undo",errors:e.messages,initial_errors:!0,cls:"ui-portlet-narrow",hide_operations:!0,needs_refresh:!1,always_refresh:"tool"!=e.step_type},e),t.steps[i]=e,t.links[i]=[],t.parms[i]={}}),s.each(this.steps,function(e,i){m.default.visitInputs(e.inputs,function(e,n){t.parms[i][n]=e})}),s.each(this.steps,function(e,i){s.each(e.output_connections,function(e){s.each(t.steps,function(n,s){n.step_index===e.input_step_index&&t.links[i].push(n)})})}),s.each(this.steps,function(e,i){s.each(t.steps,function(n,a){var o={};s.each(e.output_connections,function(e){n.step_index===e.input_step_index&&(o[e.input_name]=e)}),s.each(t.parms[a],function(t,n){var s=o[n];s&&(t.type="hidden",t.help=t.step_linked?t.help+", ":"",t.help+="Output dataset '"+s.output_name+"' from step "+(parseInt(i)+1),t.step_linked=t.step_linked||[],t.step_linked.push(e))})})});var i=0;this.wp_inputs={},s.each(this.steps,function(i,n){s.each(t.parms[n],function(t,n){e(t.value,function(e){e.links.push(i),t.wp_linked=!0,t.type="text",t.backdrop=!0,t.style="ui-form-wp-target"})}),s.each(i.post_job_actions,function(t){s.each(t.action_arguments,function(t){e(t,function(){})})})}),s.each(this.steps,function(e,i){if("tool"==e.step_type){var n=!0;m.default.visitInputs(e.inputs,function(i,s,a){var o=i.value&&"RuntimeValue"==i.value.__class__,l=-1!=["data","data_collection"].indexOf(i.type),d=a[i.data_ref];i.step_linked&&!t._isDataStep(i.step_linked)&&(n=!1),i.options&&(0==i.options.length&&!n||i.wp_linked)&&(i.is_workflow=!0),d&&(i.is_workflow=d.step_linked&&!t._isDataStep(d.step_linked)||i.wp_linked),(l||i.value&&"RuntimeValue"==i.value.__class__&&!i.step_linked)&&(e.collapsed=!1),o&&(i.value=i.default_value),i.flavor="workflow",o||l||"hidden"===i.type||i.wp_linked||(i.optional||!r.default.isEmpty(i.value)&&""!==i.value)&&(i.collapsible_value=i.value,i.collapsible_preview=!0)})}})},render:function(){var e=this;this.deferred.reset(),this._renderHeader(),this._renderMessage(),this._renderParameters(),this._renderHistory(),s.each(this.steps,function(t){e._renderStep(t)})},_renderHeader:function(){var e=this;this.execute_btn=new u.default.Button({icon:"fa-check",title:"Run workflow",cls:"btn btn-primary",onclick:function(){e._execute()}}),this.$header.addClass("ui-form-header").empty().append(new u.default.Label({title:"Workflow: "+this.model.get("name")}).$el).append(this.execute_btn.$el)},_renderMessage:function(){this.$message.empty(),this.model.get("has_upgrade_messages")&&this.$message.append(new u.default.Message({message:"Some tools in this workflow may have changed since it was last saved or some errors were found. The workflow may still run, but any new options will have default values. Please review the messages below to make a decision about whether the changes will affect your analysis.",status:"warning",persistent:!0,fade:!1}).$el);var e=this.model.get("step_version_changes");e&&e.length>0&&this.$message.append(new u.default.Message({message:"Some tools are being executed with different versions compared to those available when this workflow was last saved because the other versions are not or no longer available on this Galaxy instance. To upgrade your workflow and dismiss this message simply edit the workflow and re-save it.",status:"warning",persistent:!0,fade:!1}).$el)},_renderParameters:function(){var e=this;this.wp_form=null,s.isEmpty(this.wp_inputs)||(this.wp_form=new f.default({title:"<b>Workflow Parameters</b>",inputs:this.wp_inputs,cls:"ui-portlet-narrow",onchange:function(){s.each(e.wp_form.input_list,function(t,i){s.each(t.links,function(t){e._refreshStep(t)})})}}),this._append(this.$steps.empty(),this.wp_form.$el))},_renderHistory:function(){this.history_form=new f.default({cls:"ui-portlet-narrow",title:"<b>History Options</b>",inputs:[{type:"conditional",name:"new_history",test_param:{name:"check",label:"Send results to a new history",type:"boolean",value:"false",help:""},cases:[{value:"true",inputs:[{name:"name",label:"History name",type:"text",value:this.model.get("name")}]}]}]}),this._append(this.$steps,this.history_form.$el)},_renderStep:function(e){var t=this,i=null;this.deferred.execute(function(a){if(t.$steps.addClass("ui-steps"),"tool"==e.step_type)e.postchange=function(t,i){var s={tool_id:e.id,tool_version:e.version,inputs:n.extend(!0,{},i.data.create())};i.wait(!0),Galaxy.emit.debug("tool-form-composite::postchange()","Sending current state.",s),r.default.request({type:"POST",url:Galaxy.root+"api/tools/"+e.id+"/build",data:s,success:function(e){i.update(e),i.wait(!1),Galaxy.emit.debug("tool-form-composite::postchange()","Received new model.",e),t.resolve()},error:function(e){Galaxy.emit.debug("tool-form-composite::postchange()","Refresh request failed.",e),t.reject()}})},i=new _.default(e),e.post_job_actions&&e.post_job_actions.length&&i.portlet.append(n("<div/>").addClass("ui-form-element-disabled").append(n("<div/>").addClass("ui-form-title").html("<b>Job Post Actions</b>")).append(n("<div/>").addClass("ui-form-preview").html(s.reduce(e.post_job_actions,function(e,t){return e+" "+t.short_str},""))));else{var o=-1!=["data_input","data_collection_input"].indexOf(e.step_type);s.each(e.inputs,function(e){e.flavor="module",e.hide_label=o}),i=new f.default(r.default.merge({title:e.fixed_title,onchange:function(){s.each(t.links[e.index],function(e){t._refreshStep(e)})},inputs:e.inputs&&e.inputs.length>0?e.inputs:[{type:"hidden",name:"No options available.",ignore:null}]},e))}t.forms[e.index]=i,t._append(t.$steps,i.$el),t._refresh(),e.needs_refresh&&t._refreshStep(e),i.portlet[t.show_progress?"disable":"enable"](),t.show_progress&&t.execute_btn.model.set({wait:!0,wait_text:"Preparing...",percentage:100*(e.index+1)/t.steps.length}),Galaxy.emit.debug("tool-form-composite::initialize()",e.index+" : Workflow step state ready.",e),setTimeout(function(){a.resolve()},0)})},_refreshStep:function(e){var t=this,i=this.forms[e.index];i?(s.each(t.parms[e.index],function(e,n){if(e.step_linked||e.wp_linked){var a=i.field_list[i.data.match(n)];if(a){var o=void 0;if(e.step_linked)o={values:[]},s.each(e.step_linked,function(e){if(t._isDataStep(e)){var i=t.forms[e.index].data.create().input;i&&s.each(i.values,function(e){o.values.push(e)})}}),!e.multiple&&o.values.length>0&&(o={values:[o.values[0]]});else if(e.wp_linked){o=e.value;for(var r,l=/\$\{(.+?)\}/g;r=l.exec(e.value);){var d=t.wp_form.field_list[t.wp_form.data.match(r[1])],c=d&&d.value();c&&(o=o.split(r[0]).join(c))}}void 0!==o&&a.value(o)}}}),i.trigger("change")):e.needs_refresh=!0},_refreshHistory:function(){var e=this,t=parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.model;this._refresh_history&&clearTimeout(this._refresh_history),t&&t.refresh().success(function(){0===t.numOfUnfinishedShownContents()&&(e._refresh_history=setTimeout(function(){e._refreshHistory()},t.UPDATE_DELAY))})},_execute:function(){var e=this;this.show_progress=!0,this._enabled(!1),this.deferred.execute(function(t){setTimeout(function(){t.resolve(),e._submit()},0)})},_submit:function(){var e=this,t=this.history_form.data.create(),i={new_history_name:t["new_history|name"]?t["new_history|name"]:null,history_id:t["new_history|name"]?null:this.model.get("history_id"),replacement_params:this.wp_form?this.wp_form.data.create():{},parameters:{},parameters_normalized:!0,batch:!0},s=!0;for(var a in this.forms){var o=this.forms[a],l=o.data.create(),d=e.steps[a],c=d.step_index;o.trigger("reset");for(var u in l){var h=l[u],f=o.data.match(u),p=(o.field_list[f],o.input_list[f]);if(!p.step_linked){if(!(s=this._isDataStep(d)?h&&h.values&&h.values.length>0:p.optional||p.is_workflow&&""!==h||!p.is_workflow&&null!==h)){o.highlight(f);break}i.parameters[c]=i.parameters[c]||{},i.parameters[c][u]=l[u]}}if(!s)break}s?(Galaxy.emit.debug("tool-form-composite::submit()","Validation complete.",i),r.default.request({type:"POST",url:Galaxy.root+"api/workflows/"+this.model.id+"/invocations",data:i,success:function(t){if(Galaxy.emit.debug("tool-form-composite::submit","Submission successful.",t),e.$el.children().hide(),e.$el.append(e._templateSuccess(t)),n.isArray(t)&&t.length>0){e.$el.append(n("<div/>",{id:"webhook-view"}));new b.default.WebhookView({urlRoot:Galaxy.root+"api/webhooks/workflow",toolId:i.tool_id,toolVersion:i.tool_version})}e._refreshHistory()},error:function(t){Galaxy.emit.debug("tool-form-composite::submit","Submission failed.",t);var n=!1;if(t&&t.err_data)for(var s in e.forms){var a=e.forms[s],o=t.err_data[a.model.get("step_index")];if(o){var r=a.data.matchResponse(o);for(var l in r){a.highlight(l,r[l]),n=!0;break}}}n||e.modal.show({title:"Workflow submission failed",body:e._templateError(i,t&&t.err_msg),buttons:{Close:function(){e.modal.hide()}}})},complete:function(){e._enabled(!0)}})):(e._enabled(!0),Galaxy.emit.debug("tool-form-composite::submit()","Validation failed.",i))},_append:function(e,t){e.append("<p/>").append(t)},_enabled:function(e){this.execute_btn.model.set({wait:!e,wait_text:"Sending...",percentage:-1}),this.wp_form&&this.wp_form.portlet[e?"enable":"disable"](),this.history_form&&this.history_form.portlet[e?"enable":"disable"](),s.each(this.forms,function(t){t&&t.portlet[e?"enable":"disable"]()})},_isDataStep:function(e){for(var t=n.isArray(e)?e:[e],i=0;i<t.length;i++){var s=t[i];if(!s||!s.step_type||!s.step_type.startsWith("data"))return!1}return!0},_templateSuccess:function(e){return n.isArray(e)&&e.length>0?n("<div/>").addClass("donemessagelarge").append(n("<p/>").html("Successfully invoked workflow <b>"+r.default.sanitize(this.model.get("name"))+"</b>"+(e.length>1?" <b>"+e.length+" times</b>":"")+".")).append(n("<p/>").append("<b/>").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. 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this._setUpItemViewListeners(s),s},_destroyItemView:function(e){this.stopListening(e),this.views=n.without(this.views,e)},_destroyItemViews:function(e){var t=this;return t.views.forEach(function(e){t.stopListening(e)}),t.views=[],t},freeViews:function(){return this._destroyItemViews()},_getItemViewClass:function(e){return this.viewClass},_getItemViewOptions:function(e){return{fxSpeed:this.fxSpeed,expanded:!1,selectable:this.selecting,selected:n.contains(this.selected,e.id),draggable:this.dragItems}},_setUpItemViewListeners:function(e){var t=this;return this.listenTo(e,"all",function(){var e=Array.prototype.slice.call(arguments,0);e[0]="view:"+e[0],t.trigger.apply(t,e)}),this.listenTo(e,"draggable:dragstart",function(e,t){var i={},n=this.getSelectedModels();i=n.length?n.toJSON():[t.model.toJSON()],e.dataTransfer.setData("text",JSON.stringify(i))},this),t},_attachItems:function(e){var t=this;return this.$list(e).append(this.views.map(function(e){return t._renderItemView$el(e)})),this},_renderItemView$el:function(e){return e.render(0).$el},_renderEmptyMessage:function(e){this.debug("_renderEmptyMessage",e,this.searchFor);var t=this.searchFor?this.noneFoundMsg:this.emptyMsg;return this.$emptyMessage(e).text(t)},expandAll:function(){n.each(this.views,function(e){e.expand()})},collapseAll:function(){n.each(this.views,function(e){e.collapse()})},addItemView:function(e,t,i){var n=this,a=n._filterCollection().indexOf(e);if(-1!==a){var o=n._createItemView(e);return s(o).queue("fx",[function(e){n.$emptyMessage().is(":visible")?n.$emptyMessage().fadeOut(n.fxSpeed,e):e()},function(e){n._attachView(o,a),e()}]),o}},_attachView:function(e,t,i){i=!!n.isUndefined(i)||i,t=t||0;var s=this;return s.views.splice(t,0,e),s._insertIntoListAt(t,s._renderItemView$el(e).hide()),s.trigger("view:attached",e),i?e.$el.slideDown(s.fxSpeed,function(){s.trigger("view:attached:rendered")}):(e.$el.show(),s.trigger("view:attached:rendered")),e},_insertIntoListAt:function(e,t){var i=this.$list();return 0===e?i.prepend(t):i.children().eq(e-1).after(t),t},removeItemView:function(e,t,i){var a=this,o=n.find(a.views,function(t){return t.model===e});if(o)return a.views=n.without(a.views,o),a.trigger("view:removed",o),s({}).queue("fx",[function(e){o.$el.fadeOut(a.fxSpeed,e)},function(e){o.remove(),a.trigger("view:removed:rendered"),a.views.length?e():a._renderEmptyMessage().fadeIn(a.fxSpeed,e)}]),o},viewFromModelId:function(e){return n.find(this.views,function(t){return t.model.id===e})},viewFromModel:function(e){return e?this.viewFromModelId(e.id):void 0},viewsWhereModel:function(e){return this.views.filter(function(t){return n.isMatch(t.model.attributes,e)})},viewRange:function(e,t){if(e===t)return e?[e]:[];var i=this.views.indexOf(e),n=this.views.indexOf(t);return-1===i||-1===n?i===n?[]:-1===i?[t]:[e]:i<n?this.views.slice(i,n+1):this.views.slice(n,i+1)},_renderSearch:function(e){return e.find(".controls .search-input").searchInput({placeholder:this.searchPlaceholder,initialVal:this.searchFor,onfirstsearch:n.bind(this._firstSearch,this),onsearch:n.bind(this.searchItems,this),onclear:n.bind(this.clearSearch,this)}),e},_firstSearch:function(e){return this.log("onFirstSearch",e),this.searchItems(e)},searchItems:function(e,t){if(this.log("searchItems",e,this.searchFor,t),!t&&this.searchFor===e)return this;this.searchFor=e,this.renderItems(),this.trigger("search:searching",e,this);var i=this.$("> .controls .search-query");return i.val()!==e&&i.val(e),this},clearSearch:function(e){return this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.renderItems(),this},THROTTLE_SELECTOR_FX_AT:20,showSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!0,this.$(".list-actions").slideDown(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.showSelector(e)})},hideSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!1,this.$(".list-actions").slideUp(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.hideSelector(e)}),this.selected=[],this.lastSelected=null},toggleSelectors:function(){this.selecting?this.hideSelectors():this.showSelectors()},selectAll:function(e){n.each(this.views,function(t){t.select(e)})},deselectAll:function(e){this.lastSelected=null,n.each(this.views,function(t){t.deselect(e)})},selectRange:function(e,t){var i=this.viewRange(e,t);return n.each(i,function(e){e.select()}),i},getSelectedViews:function(){return n.filter(this.views,function(e){return e.selected})},getSelectedModels:function(){return new this.collection.constructor(n.map(this.getSelectedViews(),function(e){return e.model}))},_showLoadingIndicator:function(e,t,i){this.debug("_showLoadingIndicator",this.indicator,e,t,i),t=void 0!==t?t:this.fxSpeed,this.indicator||(this.indicator=new d.default(this.$el),this.debug("\t created",this.indicator)),this.$el.is(":visible")?(this.$el.fadeOut(t),this.indicator.show(e,t,i)):this.indicator.show(0,i)},_hideLoadingIndicator:function(e,t){this.debug("_hideLoadingIndicator",this.indicator,e,t),e=void 0!==e?e:this.fxSpeed,this.indicator&&this.indicator.hide(e,t)},scrollPosition:function(){return this.$scrollContainer().scrollTop()},scrollTo:function(e,t){return t=t||0,this.$scrollContainer().animate({scrollTop:e},t),this},scrollToTop:function(e){return this.scrollTo(0,e)},scrollToItem:function(e,t){return this},scrollToId:function(e,t){return this.scrollToItem(this.viewFromModelId(e),t)},events:{"click .select-all":"selectAll","click .deselect-all":"deselectAll"},toString:function(){return"ListPanel("+this.collection+")"}});p.prototype.templates=function(){return{el:u.default.wrapTemplate(["<div>",'<div class="controls"></div>','<div class="list-items"></div>','<div class="empty-message infomessagesmall"></div>',"</div>"]),controls:u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- view.title %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"])}}();var m=p.extend({modelCollectionKey:"contents",initialize:function(e){p.prototype.initialize.call(this,e),this.selecting=void 0!==e.selecting&&e.selecting,this.setModel(this.model,e)},setModel:function(e,t){if(t=t||{},this.debug(this+".setModel:",e,t),this.freeModel(),this.freeViews(),e){var i=this.model?this.model.get("id"):null;this.model=e,this.logger&&(this.model.logger=this.logger),this._setUpModelListeners(),this.stopListening(this.collection),this.collection=this.model[this.modelCollectionKey]||t.collection||this._createDefaultCollection(),this._setUpCollectionListeners(),i&&e.get("id")!==i&&this.trigger("new-model",this)}return this},freeModel:function(){return this.model&&this.stopListening(this.model),this},_setUpModelListeners:function(){return this.log(this+"._setUpModelListeners",this.model),this.listenTo(this.model,"error",function(){var e=Array.prototype.slice.call(arguments,0);e.unshift("error"),this.trigger.apply(this,e)},this),this.logger&&this.listenTo(this.model,"all",function(e){this.info(this+"(model)",e,arguments)}),this},_renderControls:function(e){this.debug(this+"(ModelListPanel)._renderControls");var t=this.model?this.model.toJSON():{},i=s(this.templates.controls(t,this));return e.find(".controls").replaceWith(i),i},toString:function(){return"ModelListPanel("+this.model+")"}});m.prototype.templates=function(){var e=u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- model.name %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"]);return n.extend(n.clone(p.prototype.templates),{controls:e})}(),t.default={ListPanel:p,ModelListPanel:m}}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";function n(e,t){function i(e){o(this).parent().children("input").val("").trigger("searchInput.clear").blur(),t.onclear()}function n(e,n){if(!n)return i();o(this).trigger("search.search",n),"function"==typeof t.onfirstsearch&&u?(u=!1,t.onfirstsearch(n)):t.onsearch(n)}function s(){return['<input type="text" name="',t.name,'" placeholder="',t.placeholder,'" ','class="search-query ',t.classes,'" ',"/>"].join("")}var l=27,d=13,c=o(e),u=!0,h={initialVal:"",name:"search",placeholder:"search",classes:"",onclear:function(){},onfirstsearch:null,onsearch:function(e){},minSearchLen:0,escWillClear:!0,oninit:function(){}};return"string"===a.default.type(t)?("toggle-loading"===t&&function(){c.find(".search-loading").toggle(),c.find(".search-clear").toggle()}(),c):("object"===a.default.type(t)&&(t=a.default.extend(!0,{},h,t)),c.addClass("search-input").prepend([function(){return o(s()).focus(function(e){o(this).select()}).keyup(function(e){if(e.preventDefault(),e.stopPropagation(),e.which===l&&t.escWillClear)i.call(this,e);else{var s=o(this).val();(e.which===d||t.minSearchLen&&s.length>=t.minSearchLen)&&n.call(this,e,s)}}).val(t.initialVal)}(),function(){return o(['<span class="search-clear fa fa-times-circle" ','title="',r("clear search (esc)"),'"></span>'].join("")).tooltip({placement:"bottom"}).click(function(e){i.call(this,e)})}(),function(){return o(['<span class="search-loading fa fa-spinner fa-spin" ','title="',r("loading..."),'"></span>'].join("")).hide().tooltip({placement:"bottom"})}()]))}var s=i(0),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=a.default,r=window._l||function(e){return e};a.default.fn.extend({searchInput:function(e){return this.each(function(){return n(this,e)})}})},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(66),a=n(s),o=i(5),r=n(o),l=i(120),d=n(l),c=i(4),u=n(c),h=a.default.DatasetListItemView,f=h.extend({className:h.prototype.className+" history-content",initialize:function(e,t){h.prototype.initialize.call(this,e,t)},toString:function(){return"HDAListItemView("+(this.model?""+this.model:"(no model)")+")"}});f.prototype.templates=function(){var t=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+"</span>\n            </div>\n            </br>\n            "+d.default.nametagTemplate(t)+"\n        </div>\n    "},i=e.extend({},h.prototype.templates.warnings,{hidden:r.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,u.default)("This dataset has been hidden"),"</div>","<% } %>"],"dataset")});return e.extend({},h.prototype.templates,{titleBar:t,warnings:i})}(),t.default={HDAListItemView:f}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function i(t){return 0==t.indexOf("name:")?'<span class="label label-info">'+e.escape(t.slice(5))+"</span>":""}function n(t){return'<span class="nametags">'+e.sortBy(e.uniq(t.tags)).map(i).join("")+"</span>"}Object.defineProperty(t,"__esModule",{value:!0}),t.default={nametagTemplate:n}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(16),a=n(s),o=i(67),r=n(o),l=i(122),d=n(l),c=i(5),u=(n(c),i(120)),h=n(u),f=i(4),p=n(f),m=r.default.DCListItemView,g=m.extend({className:m.prototype.className+" history-content",_setUpListeners:function(){var e=this;m.prototype._setUpListeners.call(this);var t=function(t,i){e.render()};this.model.jobStatesSummary&&this.listenTo(this.model.jobStatesSummary,"change",t),this.listenTo(this.model,{"change:tags change:visible change:state":t})},_getFoldoutPanelClass:function(){return d.default.CollectionView},_swapNewRender:function(e){m.prototype._swapNewRender.call(this,e);var t,i=this.model.jobStatesSummary;t=i?i.new()?"loading":i.errored()?"error":i.terminal()?"ok":i.running()?"running":"queued":this.model.get("job_source_id")?"loading":this.model.get("populated_state")?a.default.OK:a.default.RUNNING,this.$el.addClass("state-"+t);var n=this.stateDescription();return this.$(".state-description").html(n),this.$el},stateDescription:function(){var e=this.model,t=(e.get("element_count"),e.get("job_source_type")),i=(this.model.get("collection_type"),d.default.collectionTypeDescription(e)),n=d.default.collectionDescription(e),s=e.jobStatesSummary;if(t&&"Job"!=t){if(s&&s.hasDetails()){var a=s.new(),o=a?null:s.jobCount();if(a)return'\n                        <div class="progress state-progress">\n                            <span class="note">Creating jobs.<span class="blinking">..</span></span>\n                            <div class="progress-bar info" style="width:100%">\n                        </div>';if(s.errored()){return"a "+i+" with "+s.numInError()+" / "+o+" jobs in error"}if(s.terminal())return n;var r=s.states().running||0,l=s.states().ok||0,c=l/(1*o),u=r/(1*o),h=1-c-u;return'\n                        <div class="progress state-progress">\n                            <span class="note">'+(o&&o>1?o+" jobs":"a job")+" generating a "+i+'</span>\n                            <div class="progress-bar ok" style="width:'+100*c+'%"></div>\n                            <div class="progress-bar running" style="width:'+100*u+'%"></div>\n                            <div class="progress-bar new" style="width:'+100*h+'%">\n                        </div>'}return'\n                    <div class="progress state-progress">\n                        <span class="note">Loading job data for '+i+'.<span class="blinking">..</span></span>\n                        <div class="progress-bar info" style="width:100%">\n                    </div>'}return n},toString:function(){return"HDCAListItemView("+(this.model?""+this.model:"(no model)")+")"}});g.prototype.templates=function(){var t=e.extend({},m.prototype.templates.warnings,{hidden:function(e){e.visible||(0,p.default)("This collection has been hidden")}}),i=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+'</span>\n            </div>\n            <div class="state-description">\n            </div>\n            '+h.default.nametagTemplate(t)+"\n        </div>\n    "};return e.extend({},m.prototype.templates,{warnings:t,titleBar:i})}(),t.default={HDCAListItemView:g}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}function s(e){var t=e.get("collection_type");return"list"==t?(0,f.default)("list"):"paired"==t?(0,f.default)("dataset pair"):"list:paired"==t?(0,f.default)("list of pairs"):(0,f.default)("nested list")}function a(e){var t=e.get("element_count"),i="a "+s(e);if(t){var n;1==t?n="with 1 item":t&&(n="with "+t+" items"),i=i+" "+(0,f.default)(n)}return i}Object.defineProperty(t,"__esModule",{value:!0});var o=i(117),r=n(o),l=i(60),d=(n(l),i(67)),c=n(d),u=i(5),h=(n(u),i(4)),f=n(h),p=r.default.ModelListPanel,m=p.extend({_logNamespace:"collections",className:p.prototype.className+" dataset-collection-panel",DatasetDCEViewClass:c.default.DatasetDCEListItemView,modelCollectionKey:"elements",initialize:function(e){p.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,this.panelStack=[],this.parentName=e.parentName,this.foldoutStyle=e.foldoutStyle||"foldout",this.downloadUrl=Galaxy.root+"api/dataset_collections/"+this.model.attributes.id+"/download"},getNestedDCDCEViewClass:function(){return c.default.NestedDCDCEListItemView.extend({foldoutPanelClass:m})},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;this.handleWarning(e),i.log("_queueNewRender:",e,t),i._swapNewRender(e),i.trigger("rendered",i)},handleWarning:function(e){var t=this.views.length,i=this.model.get("element_count");if(i&&i!==t){var n=(0,f.default)("displaying only "+t+" of "+i+" items");e.find(".elements-warning").html('<div class="warningmessagesmall">'+n+"</div>")}},_filterCollection:function(){return this.model.getVisibleContents()},_getItemViewClass:function(e){switch(e.get("element_type")){case"hda":return this.DatasetDCEViewClass;case"dataset_collection":return this.getNestedDCDCEViewClass()}throw new TypeError("Unknown element type:",e.get("element_type"))},_getItemViewOptions:function(t){var i=p.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,hasUser:this.hasUser,foldoutStyle:this.foldoutStyle})},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}}),this},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$("> .controls").add(this.$list()).hide(),e.parentName=this.model.get("name"),this.$el.append(e.render().$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.render()},events:{"click .navigation .back":"close"},close:function(e){this.remove(),this.trigger("close")},toString:function(){return"CollectionView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=function(t,i){var n=a(i.model);return'\n        <div class="controls">\n            <div class="navigation">\n            <a class="back" href="javascript:void(0)">\n                <span class="fa fa-icon fa-angle-left"></span>\n                '+(0,f.default)("Back to ")+"\n                "+e.escape(i.parentName)+'\n            </a>\n            </div>\n            <div class="title">\n                <div class="name">'+(e.escape(t.name)||e.escape(t.element_identifier))+'</div>\n                <div class="subtitle">\n                    '+n+'\n                </div>\n            </div>\n            <div class="elements-warning">\n            </div>\n            <div class="tags-display"></div>\n            <div class="actions">\n                <a class="download-btn icon-btn" href="'+i.downloadUrl+'"\n                   title="" download="" data-original-title="Download Collection">\n                   <span class="fa fa-floppy-o"></span>\n                </a>\n            </div>\n        </div>'};return e.extend(e.clone(p.prototype.templates),{controls:t})}(),t.default={collectionTypeDescription:s,collectionDescription:a,CollectionView:m}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(16),o=s(a),r=i(66),l=s(r),d=i(39),c=s(d),u=i(124),h=s(u),f=i(21),p=s(f),m=i(5),g=s(m),_=i(4),v=s(_),y=l.default.DatasetListItemView,w=y.extend({initialize:function(e){y.prototype.initialize.call(this,e),this.hasUser=e.hasUser,this.purgeAllowed=e.purgeAllowed||!1,this.tagsEditorShown=e.tagsEditorShown||!1,this.annotationEditorShown=e.annotationEditorShown||!1},_renderPrimaryActions:function(){var e=y.prototype._renderPrimaryActions.call(this);return this.model.get("state")===o.default.NOT_VIEWABLE?e:y.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){var t=this;if(this.model.get("state")===o.default.DISCARDED||!this.model.get("accessible"))return null;var i=this.model.get("purged"),n=this.model.get("deleted"),s={title:(0,v.default)("Edit attributes"),href:Galaxy.root+"datasets/edit?dataset_id="+this.model.attributes.id,faIcon:"fa-pencil",classes:"edit-btn",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/edit",{dataset_id:t.model.attributes.id}))}};return n||i?(s.disabled=!0,i?s.title=(0,v.default)("Cannot edit attributes of datasets removed from disk"):n&&(s.title=(0,v.default)("Undelete dataset to edit attributes"))):e.contains([o.default.UPLOAD,o.default.NEW],this.model.get("state"))&&(s.disabled=!0,s.title=(0,v.default)("This dataset is not yet editable")),(0,p.default)(s)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var e=this,t=this.model.isDeletedOrPurged();return(0,p.default)({title:t?(0,v.default)("Dataset is already deleted"):(0,v.default)("Delete"),disabled:t,faIcon:"fa-times",classes:"delete-btn",onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},_renderDetails:function(){var t=y.prototype._renderDetails.call(this),i=this.model.get("state");return!this.model.isDeletedOrPurged()&&e.contains([o.default.OK,o.default.FAILED_METADATA],i)&&(this._renderTags(t),this._renderAnnotation(t),this._makeDbkeyEditLink(t)),this._setUpBehaviors(t),t},_renderToolHelpButton:function(){var e=this.model.attributes.dataset_id,t=this.model.attributes.creating_job,i=this,s=function(t){var s='<div id="thdiv-'+e+'" class="toolhelp">';t.name&&t.help?(s+="<strong>Tool help for "+t.name+"</strong><hr/>",s+=t.help):s+="<strong>Tool help is unavailable for this dataset.</strong><hr/>",s+="</div>",i.$el.find(".details").append(n.parseHTML(s))},a=function(e){n.ajax({url:Galaxy.root+"api/tools/"+e.tool_id+"/build"}).done(function(e){s(e)}).fail(function(){s({})})};return null===Galaxy.user.id?null:(0,p.default)({title:(0,v.default)("Tool Help"),classes:"icon-btn",href:"#",faIcon:"fa-question",onclick:function(){i.$el.find(".toolhelp").length>0?i.$el.find(".toolhelp").toggle():n.ajax({url:Galaxy.root+"api/jobs/"+t}).done(function(e){a(e)}).fail(function(){console.log('Failed at recovering job information from the  Galaxy API for job id "'+t+'".')})}})},_renderSecondaryActions:function(){var e=y.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case o.default.UPLOAD:case o.default.NOT_VIEWABLE:return e;case o.default.ERROR:return e.unshift(this._renderErrButton()),e.concat([this._renderRerunButton(),this._renderToolHelpButton()]);case o.default.OK:case o.default.FAILED_METADATA:return e.concat([this._renderRerunButton(),this._renderVisualizationsButton(),this._renderToolHelpButton()])}return e.concat([this._renderRerunButton(),this._renderToolHelpButton()])},_renderErrButton:function(){var e=this;return(0,p.default)({title:(0,v.default)("View or report this error"),href:Galaxy.root+"datasets/error?dataset_id="+this.model.attributes.id,classes:"report-error-btn",faIcon:"fa-bug",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("datasets/error",{dataset_id:e.model.attributes.id}))}})},_renderRerunButton:function(){var e=this.model.get("creating_job");if(this.model.get("rerunnable"))return(0,p.default)({title:(0,v.default)("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("/",{job_id:e}))}})},_renderVisualizationsButton:function(){var t=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||e.isEmpty(t))return null;if(!e.isObject(t[0]))return this.warn("Visualizations have been switched off"),null;var i=n(this.templates.visualizations(t,this));return i.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(i.find(".visualization-link").addBack(".visualization-link")),i},_addScratchBookFn:function(e){e.click(function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:"Visualization",url:n(this).attr("href")}),e.preventDefault(),e.stopPropagation())})},_renderTags:function(e){if(this.hasUser){var t=this;this.tagsEditor=new c.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.tagsEditorShown=!0},onhide:function(){t.tagsEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(e){if(this.hasUser){var t=this;this.annotationEditor=new h.default.AnnotationEditor({model:this.model,el:e.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.annotationEditorShown=!0},onhide:function(){t.annotationEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(e){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var t=n('<a class="value">?</a>').attr("href",this.model.urls.edit).attr("target","_top");e.find(".dbkey .value").replaceWith(t)}},events:e.extend(e.clone(y.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(e){this.trigger("edit",this,e)},"click .delete-btn":function(e){this.trigger("delete",this,e)},"click .rerun-btn":function(e){this.trigger("rerun",this,e)},"click .report-err-btn":function(e){this.trigger("report-err",this,e)},"click .visualization-btn":function(e){this.trigger("visualize",this,e)},"click .dbkey a":function(e){this.trigger("edit",this,e)}}),_clickUndeleteLink:function(e){return this.model.undelete(),!1},_clickPurgeLink:function(e){return confirm((0,v.default)("This will permanently remove the data in your dataset. Are you sure?"))&&this.model.purge(),!1},toString:function(){return"HDAEditView("+(this.model?""+this.model:"(no model)")+")"}});w.prototype.templates=function(){var t=e.extend({},y.prototype.templates.warnings,{failed_metadata:g.default.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','<div class="failed_metadata-warning warningmessagesmall">',(0,v.default)("An error occurred setting the metadata for this dataset"),'<br /><a href="<%- dataset.urls.edit %>" target="_top">',(0,v.default)("Set it manually or retry auto-detection"),"</a>","</div>","<% } %>"],"dataset"),deleted:g.default.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,v.default)("This dataset has been deleted"),'<br /><a class="undelete-link" href="javascript:void(0);">',(0,v.default)("Undelete it"),"</a>","<% if( view.purgeAllowed ){ %>",'<br /><a class="purge-link" href="javascript:void(0);">',(0,v.default)("Permanently remove it from disk"),"</a>","<% } %>","</div>","<% } %>"],"dataset")}),i=g.default.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'<a class="visualization-link icon-btn" href="<%- visualizations[0].href %>"',' target="<%- visualizations[0].target %>" title="',(0,v.default)("Visualize in"),' <%- visualizations[0].html %>">','<span class="fa fa-bar-chart-o"></span>',"</a>","<% } else { %>",'<div class="visualizations-dropdown dropdown icon-btn">','<a data-toggle="dropdown" title="',(0,v.default)("Visualize"),'">','<span class="fa fa-bar-chart-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu">',"<% _.each( visualizations, function( visualization ){ %>",'<li><a class="visualization-link" href="<%- visualization.href %>"',' target="<%- visualization.target %>">',"<%- visualization.html %>","</a></li>","<% }); %>","</ul>","</div>","<% } %>"],"visualizations");return e.extend({},y.prototype.templates,{warnings:t,visualizations:i})}(),t.default={DatasetListItemEdit:w}}).call(t,i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(5),o=s(a),r=i(4),l=s(r);i(20);var d=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(e){e=e||{},this.tooltipConfig=e.tooltipConfig||{placement:"bottom"},this.listenTo(this.model,"change:annotation",function(){this.render()}),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.$el.html(this._template()),this.$annotation().make_text_editable({use_textarea:!0,on_finish:function(t){e.$annotation().text(t),e.model.save({annotation:t},{silent:!0}).fail(function(){e.$annotation().text(e.model.previous("annotation"))})}}),this},_template:function(){var 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n=l.default.extend({routes:{"(/)":"home","(/)root*":"home","(/)tours(/)(:tour_id)":"show_tours","(/)user(/)":"show_user","(/)user(/)(:form_id)":"show_user_form","(/)pages(/)create(/)":"show_pages_create","(/)pages(/)edit(/)":"show_pages_edit","(/)pages(/)(:action_id)":"show_pages","(/)visualizations(/)edit(/)":"show_visualizations_edit","(/)visualizations/(:action_id)":"show_visualizations","(/)workflows/import_workflow":"show_import_workflow","(/)workflows/run(/)":"show_run","(/)workflows(/)list":"show_workflows","(/)workflows/list_published(/)":"show_workflows_published","(/)workflows/create(/)":"show_workflows_create","(/)histories(/)citations(/)":"show_history_citations","(/)histories(/)rename(/)":"show_histories_rename","(/)histories(/)import(/)":"show_histories_import","(/)histories(/)permissions(/)":"show_histories_permissions","(/)histories(/)(:action_id)":"show_histories","(/)datasets(/)list(/)":"show_datasets","(/)custom_builds":"show_custom_builds","(/)datasets/edit":"show_dataset_edit_attributes","(/)datasets/error":"show_dataset_error"},require_login:["show_user","show_user_form","show_workflows"],authenticate:function(e,t){return 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e=this;this.tool_panel.get("layout").size()>0&&(this.$el.prepend(this.tool_panel_view.$el),this.tool_panel_view.render()),e.$("#internal-workflows").append(e._templateAllWorkflow({title:(0,c.default)("All workflows"),href:"workflow"})),n.each(this.stored_workflow_menu_entries,function(t){e.$("#internal-workflows").append(e._templateWorkflowLink({title:t.stored_workflow.name,href:"workflows/run?id="+t.encoded_stored_workflow_id}))})},_templateTool:function(e){return['<div class="toolTitle">','<a href="',this.root,e.href,'" target="galaxy_main">',e.title,"</a>","</div>"].join("")},_templateAllWorkflow:function(e){return['<div class="toolTitle">','<a href="',Galaxy.root,e.href,'">',e.title,"</a>","</div>"].join("")},_templateWorkflowLink:function(e){return['<div class="toolTitle">','<a class="'+e.cls+' " href="',Galaxy.root,e.href,'">',e.title,"</a>","</div>"].join("")},_template:function(){return['<div class="toolMenuContainer">','<div class="toolMenu" style="display: none">','<div 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try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be.  You can also upload compressed files, which will automatically be decompressed."}},list_extensions:[],list_genomes:[],initialize:function(e){var t=this;this.options=a.default.merge(e,this.options),this.ui_button=new u.default.View({onclick:function(e){e.preventDefault(),t.show()},onunload:function(){var e=t.ui_button.model.get("percentage",0);if(e>0&&e<100)return"Several uploads are queued."}}),this.setElement(this.ui_button.$el);var t=this;a.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(e){for(var i in e)t.list_extensions.push({id:e[i].extension,text:e[i].extension,description:e[i].description,description_url:e[i].description_url,composite_files:e[i].composite_files});t.list_extensions.sort(function(e,t){var i=e.text&&e.text.toLowerCase(),n=t.text&&t.text.toLowerCase();return i>n?1:i<n?-1:0}),t.options.datatypes_disable_auto||t.list_extensions.unshift(t.options.auto)}}),a.default.get({url:Galaxy.root+"api/genomes",success:function(e){for(var i in e)t.list_genomes.push({id:e[i][1],text:e[i][0]});t.list_genomes.sort(function(e,i){return e.id==t.options.default_genome?-1:i.id==t.options.default_genome?1:e.text>i.text?1:e.text<i.text?-1:0})}})},show:function(){var e=this;if(!Galaxy.currHistoryPanel||!Galaxy.currHistoryPanel.model)return void window.setTimeout(function(){e.show()},500);this.current_user=Galaxy.user.id,this.modal||(this.tabs=new d.default.View,this.default_view=new f.default(this),this.tabs.add({id:"regular",title:"Regular",$el:this.default_view.$el}),this.composite_view=new m.default(this),this.tabs.add({id:"composite",title:"Composite",$el:this.composite_view.$el}),this.collection_view=new _.default(this),this.tabs.add({id:"collection",title:"Collection",$el:this.collection_view.$el}),this.modal=new r.default.View({title:"Download from web or upload from disk",body:this.tabs.$el,height:this.options.height,width:this.options.width,closing_events:!0,title_separator:!1})),this.modal.show()},currentHistory:function(){return this.current_user&&Galaxy.currHistoryPanel.model.get("id")},currentFtp:function(){return this.current_user&&this.options.ftp_upload_site},toData:function(e,t){var i={payload:{tool_id:"upload1",history_id:t||this.currentHistory(),inputs:{}},files:[],error_message:null};if(e&&e.length>0){var n={file_count:e.length,dbkey:e[0].get("genome","?"),file_type:e[0].get("extension","auto")};for(var s in e){var a=e[s];if(a.set("status","running"),!(a.get("file_size")>0)){i.error_message="Upload content incomplete.",a.set("status","error"),a.set("info",i.error_message);break}var 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Data",percentage:0,status:"",onunload:function(){},onclick:function(){}}).set(t),this.setElement(this._template()),this.$progress=this.$(".progress-bar"),this.listenTo(this.model,"change",this.render,this),this.render(),i(window).on("beforeunload",function(){return n.model.get("onunload")()})},render:function(){var e=this.model.attributes;this.$el.off("click").on("click",function(t){e.onclick(t)}).tooltip({title:this.model.get("tooltip"),placement:"bottom"}),this.$progress.removeClass().addClass("progress-bar").addClass("progress-bar-notransition").addClass(""!=e.status&&"progress-bar-"+e.status).css({width:e.percentage+"%"})},_template:function(){return'<div class="upload-button"><div class="progress"><div class="progress-bar"/><a class="panel-header-button" href="javascript:void(0)" id="tool-panel-upload-button"><span class="fa fa-upload"/></a></div></div>'}});t.default={View:n}}).call(t,i(2),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),r=(a(o),i(29)),l=a(r),d=i(244),c=a(d),u=i(55),h=a(u),f=i(56),p=a(f),m=i(15),g=a(m),_=i(10),v=a(_),y=i(6),w=a(y),b=i(245),x=a(b);i(57),t.default=e.View.extend({upload_size:0,collection:new l.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ui_button=e.ui_button,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.$uploadbox=this.$(".upload-box"),this.$uploadtable=this.$(".upload-table"),this.btnLocal=new w.default.Button({id:"btn-local",title:"Choose local file",onclick:function(){t.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new w.default.Button({id:"btn-ftp",title:"Choose FTP file",onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new w.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new w.default.Button({id:"btn-start",title:"Start",onclick:function(){t._eventStart()}}),this.btnStop=new w.default.Button({id:"btn-stop",title:"Pause",onclick:function(){t._eventStop()}}),this.btnReset=new w.default.Button({id:"btn-reset",title:"Reset",onclick:function(){t._eventReset()}}),this.btnClose=new w.default.Button({id:"btn-close",title:"Close",onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$uploadbox.uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$uploadbox.addClass("highlight")},ondragleave:function(){t.$uploadbox.removeClass("highlight")}}),this.ftp=new g.default.View({title:"FTP files",container:this.btnFtp.$el}),this.select_extension=new v.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t._changeExtension(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new p.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new v.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t._changeGenome(e)}}),this.loader=new x.default({$container:this.$uploadbox,collection:this.collection,new_content:function(e){var i=new c.default(t,{model:e});return t.$uploadtable.find("> tbody:first").append(i.$el),i.render(),i}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this.render()},render:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running,s=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[n?"enable":"disable"](),this.btnFtp[n?"enable":"disable"](),this.btnCreate[n?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[s?"show":"hide"](),this.$(".upload-helper")[s?"hide":"show"]()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new l.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t});this.render(),this.collection.add(i)},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"success"}),this.ui_button.model.set("percentage",this._uploadPercentage(100,i.get("file_size"))),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.success++,this.render(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this.render()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this.render()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this.render()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new h.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(0!=this.counter.announce&&0==this.counter.running){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this._uploadFtp(),this.uploadbox.start(),this.render()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){if(0==this.counter.running){this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this.render()}},_changeExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},_changeGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_uploadFtp:function(){var e=this,t=[];this.collection.each(function(i){"queued"==i.get("status")&&"ftp"==i.get("file_mode")&&(e.uploadbox.remove(i.id),t.push(i))}),t.length>0&&s.uploadpost({data:this.app.toData(t),url:this.app.options.nginx_upload_path,success:function(i){n.each(t,function(t){e._eventSuccess(t.id)})},error:function(i){n.each(t,function(t){e._eventError(t.id,i)})}})},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Type</th><th>Genome</th><th>Settings</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Type (set all):</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),r=a(o),l=i(29),d=(a(l),i(54)),c=a(d),u=i(15),h=a(u),f=i(10),p=a(f);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$settings=this.$(".upload-settings"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new h.default.View({title:"Upload configuration",container:this.$(".upload-settings"),placement:"bottom"});var s=this.app.select_genome.value(),a=this.app.select_extension.value();this.select_genome=new p.default.View({css:"upload-genome",data:i.app.list_genomes,container:this.$(".upload-genome"),value:s,onchange:function(e){i.model.set("genome",e)}}),this.select_extension=new p.default.View({css:"upload-extension",data:i.app.list_extensions,container:this.$(".upload-extension"),value:a,onchange:function(e){i.model.set("extension",e)}}),this.model.set({genome:s,extension:a}),this.$symbol.on("click",function(){i._removeRow()}),this.$(".upload-extension-info").on("click",function(e){i.app.showExtensionInfo({$el:n(e.target),title:i.select_extension.text(),extension:i.select_extension.value()})}).on("mousedown",function(e){e.preventDefault()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:genome",function(){i._refreshGenome()}),this.listenTo(this.model,"change:extension",function(){i._refreshExtension()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()})},render:function(){this._refreshType(),this._refreshPercentage(),this._refreshStatus(),this._refreshInfo(),this._refreshGenome(),this._refreshExtension(),this._refreshFileSize()},remove:function(){this.select_genome.remove(),this.select_extension.remove(),e.View.prototype.remove.apply(this)},_refreshType:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(r.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshExtension:function(){this.select_extension.value(this.model.get("extension"))},_refreshGenome:function(){this.select_genome.value(this.model.get("genome"))},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),t?(this.select_genome.enable(),this.select_extension.enable()):(this.select_genome.disable(),this.select_extension.disable()),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(r.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new c.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-extension" style="float: left;"/>&nbsp;&nbsp<div class="upload-extension-info upload-icon-button fa fa-search"/></td><td><div class="upload-genome"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,i,n){Object.defineProperty(t,"__esModule",{value:!0}),t.default=e.View.extend({initialize:function(e){this.$container=e.$container,this.collection=e.collection,this.new_content=e.new_content,this.max=e.max||50,this.content_list={},this.$message=i("<div/>").addClass("ui-limitloader").append("...only the first "+this.max+" entries are visible."),this.$container.append(this.$message),this.listenTo(this.collection,"reset",this._reset,this),this.listenTo(this.collection,"add",this._refresh,this),this.listenTo(this.collection,"remove",this._remove,this)},_done:function(){var e=n.size(this.content_list)>this.max;return this.$message[e?"show":"hide"](),e},_reset:function(){n.each(this.content_list,function(e){e.remove()}),this.content_list={},this.$message.hide()},_remove:function(e){var t=e.id,i=this.content_list[t];i&&(i.remove(),delete this.content_list[t]),this._refresh()},_refresh:function(){if(!this._done())for(var e in this.collection.models){var t=this.collection.models[e];this.content_list[t.id];if(!this.content_list[t.id]){var i=this.new_content(t);if(this.content_list[t.id]=i,this._done())break}}}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),r=(a(o),i(29)),l=a(r),d=i(247),c=a(d),u=i(56),h=a(u),f=i(15),p=(a(f),i(10)),m=a(p),g=i(6),_=a(g);t.default=e.View.extend({collection:new l.default.Collection,initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnStart=new _.default.Button({title:"Start",onclick:function(){t._eventStart()}}),this.btnClose=new _.default.Button({title:"Close",onclick:function(){t.app.modal.hide()}}),n.each([this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.select_extension=new m.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return e.composite_files}),onchange:function(e){t.collection.reset();var i=n.findWhere(t.list_extensions,{id:e});i&&i.composite_files&&n.each(i.composite_files,function(e){t.collection.add({id:t.collection.size(),file_desc:e.description||e.name})})}}),this.$(".upload-footer-extension-info").on("click",function(e){new h.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new m.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome}),this.listenTo(this.collection,"add",function(e){t._eventAnnounce(e)}),this.listenTo(this.collection,"change add",function(){t.render()}),this.select_extension.options.onchange(this.select_extension.value()),this.render()},render:function(){var e=this.collection.first();e&&"running"==e.get("status")?(this.select_genome.disable(),this.select_extension.disable()):(this.select_genome.enable(),this.select_extension.enable()),this.collection.where({status:"ready"}).length==this.collection.length&&this.collection.length>0?(this.btnStart.enable(),this.btnStart.$el.addClass("btn-primary")):(this.btnStart.disable(),this.btnStart.$el.removeClass("btn-primary")),this.$(".upload-table")[this.collection.length>0?"show":"hide"]()},_eventAnnounce:function(e){var t=new c.default(this,{model:e});this.$(".upload-table > tbody:first").append(t.$el),this.$(".upload-table")[this.collection.length>0?"show":"hide"](),t.render()},_eventStart:function(){var e=this;this.collection.each(function(t){t.set({genome:e.select_genome.value(),extension:e.select_extension.value()})}),s.uploadpost({url:this.app.options.nginx_upload_path,data:this.app.toData(this.collection.filter()),success:function(t){e._eventSuccess(t)},error:function(t){e._eventError(t)},progress:function(t){e._eventProgress(t)}})},_eventProgress:function(e){this.collection.each(function(t){t.set("percentage",e)})},_eventSuccess:function(e){this.collection.each(function(e){e.set("status","success")}),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e){this.collection.each(function(t){t.set({status:"error",info:e})})},_template:function(){return'<div class="upload-view-composite"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th/><th/><th>Description</th><th>Name</th><th>Size</th><th>Settings</th><th>Status</th></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Composite Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome/Build:</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),r=a(o),l=i(54),d=a(l),c=i(55),u=a(c),h=i(15),f=a(h),p=i(6),m=a(p),g=i(10);a(g);i(57),t.default=e.View.extend({status_classes:{init:"upload-mode fa fa-exclamation text-primary",ready:"upload-mode fa fa-check text-success",running:"upload-mode fa fa-spinner fa-spin",success:"upload-mode fa fa-check",error:"upload-mode fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template()),this.$source=this.$(".upload-source"),this.$settings=this.$(".upload-settings"),this.$status=this.$(".upload-status"),this.$text=this.$(".upload-text"),this.$text_content=this.$(".upload-text-content"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$file_name=this.$(".upload-file-name"),this.$file_desc=this.$(".upload-file-desc"),this.$file_size=this.$(".upload-file-size"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.uploadinput=this.$el.uploadinput({ondragover:function(){i.model.get("enabled")&&i.$el.addClass("warning")},ondragleave:function(){i.$el.removeClass("warning")},onchange:function(e){"running"!=i.model.get("status")&&e&&e.length>0&&(i.model.reset({file_data:e[0],file_name:e[0].name,file_size:e[0].size,file_mode:e[0].mode||"local"}),i._refreshReady())}}),this.button_menu=new m.default.ButtonMenu({icon:"fa-caret-down",title:"Select",pull:"left"}),this.$source.append(this.button_menu.$el),this.button_menu.addMenu({icon:"fa-laptop",title:"Choose local file",onclick:function(){i.uploadinput.dialog()}}),this.app.ftp_upload_site&&this.button_menu.addMenu({icon:"fa-folder-open-o",title:"Choose FTP file",onclick:function(){i._showFtp()}}),this.button_menu.addMenu({icon:"fa-edit",title:"Paste/Fetch data",onclick:function(){i.model.reset({file_mode:"new",file_name:"New File"})}}),this.ftp=new f.default.View({title:"Choose FTP file:",container:this.$source.find(".ui-button-menu"),placement:"right"}),this.settings=new f.default.View({title:"Upload configuration",container:this.$settings,placement:"bottom"}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length}),i._refreshReady()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_name",function(){i._refreshFileName()}),this.listenTo(this.model,"change:file_mode",function(){i._refreshMode()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){this.$el.attr("id","upload-row-"+this.model.id),this.$file_name.html(s.escape(this.model.get("file_name")||"-")),this.$file_desc.html(this.model.get("file_desc")||"Unavailable"),this.$file_size.html(r.default.bytesToString(this.model.get("file_size"))),this.$status.removeClass().addClass(this.status_classes.init)},remove:function(){e.View.prototype.remove.apply(this)},_refreshReady:function(){this.app.collection.each(function(e){e.set("status",e.get("file_size")>0&&"ready"||"init")})},_refreshMode:function(){"new"==this.model.get("file_mode")?(this.height=this.$el.height(),this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$text_content.val("").trigger("keyup")):(this.$el.height(this.height),this.$text.hide())},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));0!=e?this.$progress_bar.css({width:e+"%"}):(this.$progress_bar.addClass("no-transition"),this.$progress_bar.css({width:"0%"}),this.$progress_bar[0].offsetHeight,this.$progress_bar.removeClass("no-transition")),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$status.removeClass().addClass(this.status_classes[e]),this.model.set("enabled","running"!=e),this.$text_content.attr("disabled",!this.model.get("enabled")),this.$el.removeClass("success danger warning"),"running"!=e&&"ready"!=e||this.model.set("percentage",0),this.$source.find(".button")["running"==e?"addClass":"removeClass"]("disabled"),"success"==e&&(this.$el.addClass("success"),this.model.set("percentage",100),this.$percentage.html("100%")),"error"==e?(this.$el.addClass("danger"),this.model.set("percentage",0),this.$info_progress.hide(),this.$info_text.show()):(this.$info_progress.show(),this.$info_text.hide())},_refreshFileName:function(){this.$file_name.html(this.model.get("file_name")||"-")},_refreshFileSize:function(){this.$file_size.html(r.default.bytesToString(this.model.get("file_size")))},_showFtp:function(){if(this.ftp.visible)this.ftp.hide();else{var e=this;this.ftp.empty(),this.ftp.append(new u.default({ftp_upload_site:this.app.ftp_upload_site,onchange:function(t){e.ftp.hide(),"running"!=e.model.get("status")&&t&&(e.model.reset({file_mode:"ftp",file_name:t.path,file_size:t.size,file_path:t.path}),e._refreshReady())}}).$el),this.ftp.show()}},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new d.default(this).$el),this.settings.show())},_template:function(){return'<tr class="upload-row"><td><div class="upload-source"/><div class="upload-text-column"><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-status"/></td><td><div class="upload-file-desc upload-title"/></td><td><div class="upload-file-name upload-title"/></td><td><div class="upload-file-size upload-size"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),r=(a(o),i(29)),l=a(r),d=i(249),c=a(d),u=i(55),h=a(u),f=i(56),p=a(f),m=i(15),g=a(m),_=i(10),v=a(_),y=i(6),w=a(y),b=i(58);a(b);i(57),t.default=e.View.extend({upload_size:0,collection:new l.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ui_button=e.ui_button,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnLocal=new w.default.Button({id:"btn-local",title:"Choose local files",onclick:function(){t.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new w.default.Button({id:"btn-ftp",title:"Choose FTP files",onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new w.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new w.default.Button({id:"btn-start",title:"Start",onclick:function(){t._eventStart()}}),this.btnBuild=new w.default.Button({id:"btn-build",title:"Build",onclick:function(){t._eventBuild()}}),this.btnStop=new w.default.Button({id:"btn-stop",title:"Pause",onclick:function(){t._eventStop()}}),this.btnReset=new w.default.Button({id:"btn-reset",title:"Reset",onclick:function(){t._eventReset()}}),this.btnClose=new w.default.Button({id:"btn-close",title:"Close",onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnBuild,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$(".upload-box").uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$(".upload-box").addClass("highlight")},ondragleave:function(){t.$(".upload-box").removeClass("highlight")}}),this.ftp=new g.default.View({title:"FTP files",container:this.btnFtp.$el}),this.select_extension=new v.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t.updateExtension(e)}}),this.collectionType="list",this.select_collection=new v.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-collection-type"),data:[{id:"list",text:"List"},{id:"paired",text:"Paired"},{id:"list:paired",text:"List of Pairs"}],value:"list",onchange:function(e){t.updateCollectionType(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new p.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new v.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t.updateGenome(e)}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this._updateScreen()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new l.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t,extension:this.select_extension.value(),genome:this.select_genome.value()});this.collection.add(i);var n=new c.default(this,{model:i});this.$(".upload-table > tbody:first").append(n.$el),this._updateScreen(),n.render()},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=n.pluck(t.outputs,"hid"),s=this.collection.get(e);s.set({percentage:100,status:"success",hids:i}),this.ui_button.model.set("percentage",this._uploadPercentage(100,s.get("file_size"))),this.upload_completed+=100*s.get("file_size"),this.counter.announce--,this.counter.success++,this._updateScreen(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this._updateScreen()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this._updateScreen()},_eventBuild:function(){var e=[];n.forEach(this.collection.models,function(t){e.push.apply(e,t.get("hids"))});var t=n.map(e,function(e){return Galaxy.currHistoryPanel.collection.getByHid(e)}),i=new Galaxy.currHistoryPanel.collection.constructor(t);i.historyId=Galaxy.currHistoryPanel.collection.historyId,Galaxy.currHistoryPanel.buildCollection(this.collectionType,i,!0),this.counter.running=0,this._updateScreen(),this._eventReset(),this.app.modal.hide()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this._updateScreen()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new h.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(!(0==this.counter.announce||this.counter.running>0)){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this.uploadbox.start(),this._updateScreen()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){0==this.counter.running&&(this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this._updateScreen())},updateExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},updateCollectionType:function(e){this.collectionType=e},updateGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_updateScreen:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running&&0==this.counter.announce&&this.counter.success>0&&0==this.counter.error,s=0==this.counter.running,a=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnBuild[n?"enable":"disable"](),this.btnBuild.$el[n?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[s?"enable":"disable"](),this.btnFtp[s?"enable":"disable"](),this.btnCreate[s?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[a?"show":"hide"](),this.$(".upload-helper")[a?"hide":"show"]()},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title-compressed">Collection Type:</span><span class="upload-footer-collection-type"/><span class="upload-footer-title-compressed">File Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title-compressed">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),r=a(o),l=i(29),d=(a(l),i(54)),c=a(d),u=i(15),h=a(u),f=i(10);a(f);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title-extended"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new h.default.View({title:"Upload configuration",container:this.$(".upload-settings"),placement:"bottom"});this.app.select_genome.value(),this.app.select_extension.value();this.$symbol.on("click",function(){i._removeRow()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(r.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(r.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new c.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title-extended"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(6),a=n(s),o=i(251),r=n(o),l=i(252),d=n(l),c=i(4),u=n(c),h=e.View.extend({initialize:function(t,i){var n=this;this.userIsAnonymous=Galaxy.user.isAnonymous(),this.allow_user_dataset_purge=i.config.allow_user_dataset_purge,this.root=i.root,this.historyView=new d.default.CurrentHistoryView({className:d.default.CurrentHistoryView.prototype.className+" middle",purgeAllowed:this.allow_user_dataset_purge,linkTarget:"galaxy_main"}),Galaxy.currHistoryPanel=this.historyView,Galaxy.currHistoryPanel.listenToGalaxy(Galaxy),this.buttonRefresh=new a.default.ButtonLink({id:"history-refresh-button",title:"Refresh history",cls:"panel-header-button",icon:"fa fa-refresh",onclick:function(){n.historyView.loadCurrentHistory()}}),this.buttonOptions=new a.default.ButtonLink({id:"history-options-button",title:"History options",cls:"panel-header-button",target:"galaxy_main",icon:"fa fa-cog",href:this.root+"root/history_options"}),this.buttonViewMulti=new a.default.ButtonLink({id:"history-view-multi-button",title:"View all histories",cls:"panel-header-button",icon:"fa fa-columns",href:this.root+"history/view_multiple"}),this.model=new e.Model({cls:"history-right-panel",title:(0,u.default)("History"),buttons:[this.buttonRefresh,this.buttonOptions,this.buttonViewMulti]}),this.setElement(this._template()),this.historyView.setElement(this.$el),this.historyView.connectToQuotaMeter(Galaxy.quotaMeter),this.historyView.loadCurrentHistory(),Galaxy.listenTo(this.historyView,"history-size-change",function(){Galaxy.user.fetch({url:Galaxy.user.urlRoot()+"/"+(Galaxy.user.id||"current")})})},render:function(){this.optionsMenu=(0,r.default)(this.buttonOptions.$el,{anonymous:this.userIsAnonymous,purgeAllowed:this.allow_user_dataset_purge,root:this.root}),this.buttonViewMulti.$el[this.userIsAnonymous?"hide":"show"]()},_template:function(e){return['<div id="current-history-panel" class="history-panel middle"/>'].join("")},toString:function(){return"historyPanel"}});t.default=h}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}function a(e,t,i){return n.clone(m).filter(function(n){return!(e&&!n.anon)&&(!(!t&&n.purge)&&(n.href&&(n.href=i+n.href,n.target=n.target||"galaxy_main"),n.confirm&&(n.func=function(){confirm(n.confirm)&&(galaxy_main.location=n.href)}),!0))})}Object.defineProperty(t,"__esModule",{value:!0});var o=i(42),r=s(o),l=i(112),d=s(l),c=i(5),u=(s(c),i(4)),h=s(u),f=i(34),p=s(f),m=[{html:(0,h.default)("History Lists"),header:!0},{html:(0,h.default)("Saved Histories"),href:"histories/list",target:"_top"},{html:(0,h.default)("Histories Shared with Me"),href:"histories/list_shared",target:"_top"},{html:(0,h.default)("Current History"),header:!0,anon:!0},{html:(0,h.default)("Create New"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.createNewHistory()}},{html:(0,h.default)("Copy History"),func:function(){(0,d.default)(Galaxy.currHistoryPanel.model).done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Share or Publish"),href:"history/sharing"},{html:(0,h.default)("Show Structure"),href:"history/display_structured",anon:!0},{html:(0,h.default)("Extract Workflow"),href:"workflow/build_from_current_history"},{html:(0,h.default)("Delete"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history?"))&&Galaxy.currHistoryPanel.model._delete().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Permanently"),purge:!0,anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history permanently? This cannot be undone."))&&Galaxy.currHistoryPanel.model.purge().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Dataset Actions"),header:!0,anon:!0},{html:(0,h.default)("Copy Datasets"),href:"dataset/copy_datasets"},{html:(0,h.default)("Dataset Security"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/permissions?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Resume Paused Jobs"),href:"history/resume_paused_jobs?current=True",anon:!0},{html:(0,h.default)("Collapse Expanded Datasets"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.collapseAll()}},{html:(0,h.default)("Unhide Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really unhide all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"unhide"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"delete"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Purge Deleted Datasets"),confirm:(0,h.default)("Really delete all deleted datasets permanently? This cannot be undone."),href:"history/purge_deleted_datasets",purge:!0,anon:!0},{html:(0,h.default)("Downloads"),header:!0},{html:(0,h.default)("Export Tool Citations"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/citations?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Export History to File"),href:"history/export_archive?preview=True",anon:!0},{html:(0,h.default)("Other Actions"),header:!0},{html:(0,h.default)("Import from File"),href:"histories/import",target:"_top"}];p.default.add({url:"api/webhooks/history-menu/all",async:!1,callback:function(t){var i=[];e.each(t.models,function(e,t){var n=t.toJSON();n.activate&&i.push({html:(0,h.default)(n.config.title),anon:!0})}),i.length>0&&(i.unshift({html:(0,h.default)("Webhooks"),header:!0}),e.merge(m,i))}});var g=function(e,t){t=t||{};var i=void 0===t.anonymous||t.anonymous,n=t.purgeAllowed||!1,s=a(i,n,Galaxy.root);return new r.default(e,s)};t.default=g}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(62),r=(a(o),i(254)),l=a(r),d=i(5),c=a(d),u=i(4),h=a(u),f=c.default.SessionStorageModel.extend({defaults:{tagsEditorShown:!1,annotationEditorShown:!1,scrollPosition:0},toString:function(){return"HistoryViewPrefs("+JSON.stringify(this.toJSON())+")"}});f.storageKey=function(){return"history-panel"};var p=l.default.HistoryViewEdit,m=p.extend({className:p.prototype.className+" current-history-panel",HDCAViewClass:p.prototype.HDCAViewClass.extend({foldoutStyle:"drilldown"}),emptyMsg:[(0,h.default)("This history is empty"),". ",(0,h.default)("You can "),'<a class="uploader-link" href="javascript:void(0)">',(0,h.default)("load your own data"),"</a>",(0,h.default)(" or "),'<a class="get-data-link" href="javascript:void(0)">',(0,h.default)("get data from an external source"),"</a>"].join(""),initialize:function(t){t=t||{},this.preferences=new f(e.extend({id:f.storageKey()},e.pick(t,e.keys(f.prototype.defaults)))),p.prototype.initialize.call(this,t),this.panelStack=[],this.currentContentId=t.currentContentId||null},_setUpListeners:function(){p.prototype._setUpListeners.call(this);var e=this;this.on("new-model",function(){e.preferences.set("scrollPosition",0)})},loadCurrentHistory:function(){return this.loadHistory(null,{url:Galaxy.root+"history/current_history_json"})},switchToHistory:function(e,t){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to switch histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(e,{url:Galaxy.root+"history/set_as_current?id="+e})},createNewHistory:function(e){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to create histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(null,{url:Galaxy.root+"history/create_new_current"})},setModel:function(e,t,i){return p.prototype.setModel.call(this,e,t,i),this.model&&this.model.id&&(this.log("checking for updates"),this.model.checkForUpdates()),this},_setUpModelListeners:function(){return p.prototype._setUpModelListeners.call(this),this.listenTo(this.model,{"change:nice_size change:size":function(){this.trigger("history-size-change",this,this.model,arguments)},"change:id":function(){this.once("loading-done",function(){this.model.checkForUpdates()})}})},_setUpCollectionListeners:function(){p.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,"state:ready",function(e,t,i){e.get("visible")||this.collection.storage.includeHidden()||this.removeItemView(e)})},_setUpBehaviors:function(t){t=t||this.$el;var i=this;return p.prototype._setUpBehaviors.call(i,t),this._debouncedScrollCaptureHandler||(this._debouncedScrollCaptureHandler=e.debounce(function(){i.$el.is(":visible")&&i.preferences.set("scrollPosition",n(this).scrollTop())},40)),i.$scrollContainer(t).off("scroll",this._debouncedScrollCaptureHandler).on("scroll",this._debouncedScrollCaptureHandler),i},_buildNewRender:function(){if(!this.model)return n();var e=p.prototype._buildNewRender.call(this);return e.find(".search").prependTo(e.find("> .controls")),this._renderQuotaMessage(e),e},_renderQuotaMessage:function(e){return e=e||this.$el,n(this.templates.quotaMsg({},this)).prependTo(e.find(".messages"))},_renderTags:function(e){var t=this;p.prototype._renderTags.call(t,e),t.preferences.get("tagsEditorShown")&&t.tagsEditor.toggle(!0),t.listenTo(t.tagsEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("tagsEditorShown",e.hidden)})},_renderAnnotation:function(e){var t=this;p.prototype._renderAnnotation.call(t,e),t.preferences.get("annotationEditorShown")&&t.annotationEditor.toggle(!0),t.listenTo(t.annotationEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("annotationEditorShown",e.hidden)})},_swapNewRender:function(t){p.prototype._swapNewRender.call(this,t);var i=this;return e.delay(function(){var e=i.preferences.get("scrollPosition");e&&i.scrollTo(e,0)},10),this},_attachItems:function(e){p.prototype._attachItems.call(this,e);var t=this;return t.currentContentId&&t._setCurrentContentById(t.currentContentId),this},addItemView:function(e,t,i){var n=p.prototype.addItemView.call(this,e,t,i);return n&&this.panelStack.length?this._collapseDrilldownPanel():n},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}})},setCurrentContent:function(e){this.$(".history-content.current-content").removeClass("current-content"),e?(e.$el.addClass("current-content"),this.currentContentId=e.model.id):this.currentContentId=null},_setCurrentContentById:function(e){var t=this.viewFromModelId(e)||null;this.setCurrentContent(t)},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$controls().add(this.$list()).hide(),e.parentName=this.model.get("name"),e.delegateEvents().render().$el.appendTo(this.$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.$controls().add(this.$list()).show()},events:e.extend(e.clone(p.prototype.events),{"click .uploader-link":function(e){Galaxy.upload.show(e)},"click .get-data-link":function(e){var t=n(".toolMenuContainer");t.parent().scrollTop(0),t.find('span:contains("Get Data")').click()}}),listenToGalaxy:function(t){this.listenTo(t,{"center-frame:load":function(t){var i=t.fullpath,n=null,s={display:/datasets\/([a-f0-9]+)\/display/,edit:/datasets\/([a-f0-9]+)\/edit/,report_error:/dataset\/errors\?id=([a-f0-9]+)/,rerun:/tool_runner\/rerun\?id=([a-f0-9]+)/,show_params:/datasets\/([a-f0-9]+)\/show_params/};e.find(s,function(t,s){return n=e.result(i.match(t),1)}),this._setCurrentContentById(n?"dataset-"+n:null)},"center-panel:load":function(e){this._setCurrentContentById()}})},connectToQuotaMeter:function(e){return e?(this.listenTo(e,"quota:over",this.showQuotaMessage),this.listenTo(e,"quota:under",this.hideQuotaMessage),this.on("rendered rendered:initial",function(){e&&e.isOverQuota()&&this.showQuotaMessage()}),this):this},clearMessages:function(t){var i=e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget);return i=i.not(".quota-message"),i.fadeOut(this.fxSpeed,function(){n(this).remove()}),this},showQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")&&e.slideDown(this.fxSpeed)},hideQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")||e.slideUp(this.fxSpeed)},unhideHidden:function(){var e=this;return confirm((0,h.default)("Really unhide all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{visible:!0}).done(function(){e.model.contents.includeHidden||e.renderItems()}):s.when()},deleteHidden:function(){var e=this;return confirm((0,h.default)("Really delete all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{deleted:!0,visible:!0}):s.when()},toString:function(){return"CurrentHistoryView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=c.default.wrapTemplate(['<div class="quota-message errormessage">',(0,h.default)("You are over your disk quota"),". ",(0,h.default)("Tool execution is on hold until your disk usage drops below your allocated quota"),".","</div>"],"history");return e.extend(e.clone(p.prototype.templates),{quotaMsg:t})}(),t.default={CurrentHistoryView:m}}).call(t,i(1),i(0),i(0))},function(e,t,i){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=i(2),s=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(t[i]=e[i]);return t.default=e,t}(n),a=i(116),o=function(e){return e&&e.__esModule?e:{default:e}}(a),r=["new","queued","running"],l=["error","deleted"],d=s.Model.extend({url:function(){return Galaxy.root+"api/histories/"+this.attributes.history_id+"/contents/dataset_collections/"+this.attributes.collection_id+"/jobs_summary"},hasDetails:function(){return this.has("populated_state")},new:function(){return!this.hasDetails()||"new"==this.get("populated_state")},errored:function(){return"error"===this.get("populated_state")||this.anyWithStates(l)},states:function(){return this.get("states")||{}},anyWithState:function(e){return(this.states()[e]||0)>0},anyWithStates:function(e){var t=this.states();for(var i in e)if((t[e[i]]||0)>0)return!0;return!1},numWithStates:function(e){var t=this.states(),i=0;for(var n in e)i+=t[e[n]]||0;return i},numInError:function(){return this.numWithStates(l)},running:function(){return this.anyWithState("running")},terminal:function(){return!this.new()&&!this.anyWithStates(r)},jobCount:function(){var e=this.states(),t=0;for(var i in e)t+=e[i];return t},toString:function(){return"JobStatesSummary(id="+this.get("id")+")"}}),c=s.Collection.extend({model:d,initialize:function(){this.updateTimeoutId=null,this.active=!0},url:function(){var e=this.models.filter(function(e){return!e.terminal()}),t=e.map(function(e){return e.get("id")}).join(","),i=e.map(function(e){return e.get("model")}).join(",");return Galaxy.root+"api/histories/"+this.historyId+"/jobs_summary?ids="+t+"&types="+i},monitor:function(){var e=this;if(this.clearUpdateTimeout(),this.active){var t=function(){e.updateTimeoutId=setTimeout(function(){e.monitor()},2e3)},i=this.models.filter(function(e){return!e.terminal()});if(i.length,!1){var n=i.map(function(e){return function(){return e.fetch()}});return new o.default.AjaxQueue(n).done(t)}i.length>0?this.fetch({remove:!1}).done(t):t()}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},toString:function(){return"JobStatesSummaryCollection()"}});t.default={JobStatesSummary:d,JobStatesSummaryCollection:c,FETCH_STATE_ON_ADD:!1}},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(255),r=a(o),l=i(63),d=(a(l),i(16)),c=(a(d),i(115)),u=a(c),h=i(257),f=a(h),p=i(258),m=a(p),g=i(39),_=a(g),v=i(124),y=a(v),w=i(58),b=a(w),x=i(261),C=a(x),$=i(262),k=a($),S=i(21),T=a(S),P=i(42),E=(a(P),i(5)),D=a(E),A=i(4),M=a(A);i(20);var I=r.default.HistoryView,L=I.extend({HDAViewClass:f.default.HDAListItemEdit,HDCAViewClass:m.default.HDCAListItemEdit,initialize:function(e){e=e||{},I.prototype.initialize.call(this,e),this.tagsEditor=null,this.dragItems=!0,this.annotationEditor=null,this.purgeAllowed=e.purgeAllowed||!1,this.annotationEditorShown=e.annotationEditorShown||!1,this.tagsEditorShown=e.tagsEditorShown||!1},_setUpListeners:function(){return I.prototype._setUpListeners.call(this),this.on({"droptarget:drop":function(e,t){this.dataDropped(t),this.dropTargetOff()},"view:attached view:removed":function(){this._renderCounts()},"search:loading-progress":this._renderSearchProgress,"search:searching":this._renderSearchFindings})},_setUpModelListeners:function(){return I.prototype._setUpModelListeners.call(this),this.listenTo(this.model,"change:size",this.updateHistoryDiskSize),this},_setUpCollectionListeners:function(){return I.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"change:deleted":this._handleItemDeletedChange,"change:visible":this._handleItemVisibleChange,"change:purged":function(e){this.model.fetch()},"fetching-deleted":function(e){this.$("> .controls .deleted-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-hidden":function(e){this.$("> .controls .hidden-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-deleted-done fetching-hidden-done":this._renderCounts}),this},_buildNewRender:function(){var e=I.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.user&&Galaxy.user.id&&Galaxy.user.id===this.model.get("user_id")&&(this._renderTags(e),this._renderAnnotation(e)),e):e},updateHistoryDiskSize:function(){this.$(".history-size").text(this.model.get("nice_size"))},renderItems:function(e){var t=I.prototype.renderItems.call(this,e);return this.searchFor?this._renderSearchFindings(e):this._renderCounts(e),t},_renderCounts:function(t){t=t instanceof e?t:this.$el;var i=this.templates.counts(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i)},_renderTags:function(e){var t=this;this.tagsEditor=new _.default.TagsEditor({model:this.model,el:e.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDATagEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDATagEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".controls .actions"))})},_renderAnnotation:function(e){var t=this;this.annotationEditor=new y.default.AnnotationEditor({model:this.model,el:e.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDAAnnotationEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDAAnnotationEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".controls .actions"))})},_setUpBehaviors:function(e){if(e=e||this.$el,I.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.model.get("user_id")){var t=this;e.find("> .controls .name").attr("title",(0,M.default)("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var i=t.model.get("name");e&&e!==i?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(i)}})}},multiselectActions:function(){var e=this,t=[{html:(0,M.default)("Hide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.hide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Unhide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.unhide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Delete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.delete;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Undelete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.undelete;e.getSelectedModels().ajaxQueue(t)}}];return e.purgeAllowed&&t.push({html:(0,M.default)("Permanently delete datasets"),func:function(){if(confirm((0,M.default)("This will permanently remove the data in your datasets. Are you sure?"))){var t=u.default.HistoryDatasetAssociation.prototype.purge;e.getSelectedModels().ajaxQueue(t)}}}),t=t.concat(e._collectionActions())},_collectionActions:function(){var e=this;return[{html:(0,M.default)("Build Dataset List"),func:function(){e.buildCollection("list")}},{html:(0,M.default)("Build Dataset Pair"),func:function(){e.buildCollection("paired")}},{html:(0,M.default)("Build List of Dataset Pairs"),func:function(){e.buildCollection("list:paired")}}]},buildCollection:function(e,t,i){var n,s=this,t=t||s.getSelectedModels(),i=i||!1;"list"==e?n=b.default.createListCollection:"paired"==e?n=C.default.createPairCollection:"list:paired"==e?n=k.default.createListOfPairsCollection:console.warn("Unknown collectionType encountered "+e),n(t,i).done(function(){s.model.refresh()})},_getItemViewOptions:function(e){var t=I.prototype._getItemViewOptions.call(this,e);return n.extend(t,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),t},_handleItemDeletedChange:function(e){e.get("deleted")?this._handleItemDeletion(e):this._handleItemUndeletion(e),this._renderCounts()},_handleItemDeletion:function(e){var t=this.model.get("contents_active");t.deleted+=1,t.active-=1,this.model.contents.includeDeleted||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUndeletion:function(e){var t=this.model.get("contents_active");t.deleted-=1,this.model.contents.includeDeleted||(t.active-=1),this.model.set("contents_active",t)},_handleItemVisibleChange:function(e){e.hidden()?this._handleItemHidden(e):this._handleItemUnhidden(e),this._renderCounts()},_handleItemHidden:function(e){var t=this.model.get("contents_active");t.hidden+=1,t.active-=1,this.model.contents.includeHidden||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUnhidden:function(e){var t=this.model.get("contents_active");t.hidden-=1,this.model.contents.includeHidden||(t.active-=1),this.model.set("contents_active",t)},toggleHDATagEditors:function(e,t){n.each(this.views,function(i){i.tagsEditor&&i.tagsEditor.toggle(e,t)})},toggleHDAAnnotationEditors:function(e,t){n.each(this.views,function(i){i.annotationEditor&&i.annotationEditor.toggle(e,t)})},events:n.extend(n.clone(I.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(e){this.toggleShowDeleted()},"click .toggle-hidden-link":function(e){this.toggleShowHidden()}}),_renderSearchProgress:function(e,t){var i=e+t;return this.$("> .controls .subtitle").html(["<i>",(0,M.default)("Searching "),i,"/",this.model.contentsShown(),"</i>"].join(""))},_renderSearchFindings:function(t){t=t instanceof e?t:this.$el;var i=this.templates.found(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i),this},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var e={dragenter:n.bind(this.dragenter,this),dragover:n.bind(this.dragover,this),dragleave:n.bind(this.dragleave,this),drop:n.bind(this.drop,this)},t=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),t]);for(var i in e)e.hasOwnProperty(i)&&t.on(i,e[i]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),s("<div/>").addClass("history-drop-target")},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),s("<div/>").addClass("history-drop-target-help").text((0,M.default)("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var e=this.$(".history-drop-target").get(0);for(var t in this._dropHandlers)this._dropHandlers.hasOwnProperty(t)&&e.off(t,this._dropHandlers[t]);return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(e){e.preventDefault(),e.stopPropagation()},dragleave:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(e){e.preventDefault();var t=this,i=e.originalEvent.dataTransfer,n=i.getData("text");i.dropEffect="move";try{n=JSON.parse(n)}catch(e){t.warn("error parsing JSON from drop:",n)}return t.trigger("droptarget:drop",e,n,t),!1},dataDropped:function(t){var i=this;return n.isObject(t)&&"HistoryDatasetAssociation"===t.model_class&&t.id?0!==i.contents.currentPage?i.contents.fetchPage(0).then(function(){return i.model.contents.copy(t.id)}):i.model.contents.copy(t.id):e.when()},toString:function(){return"HistoryViewEdit("+(this.model?this.model.get("name"):"")+")"}});L.prototype.templates=function(){var e=D.default.wrapTemplate(["<% var shown = Math.max( view.views.length, history.contents_active.active ) %>","<% if( shown ){ %>",'<span class="shown-count">',"<%- shown %> ",(0,M.default)("shown"),"</span>","<% } %>","<% if( history.contents_active.deleted ){ %>",'<span class="deleted-count">',"<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>","<% } else { %>","<%- history.contents_active.deleted %> ",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("deleted"),"</a>","<% } %>","</span>","<% } %>","<% if( history.contents_active.hidden ){ %>",'<span class="hidden-count">',"<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>","<%- history.contents_active.hidden %> ",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hidden"),"</a>","<% } %>","</span>","<% } %>"],"history"),t=D.default.wrapTemplate([(0,M.default)("Found")," <%- view.views.length %>, ","<% if( history.contents_active.deleted ){ %>","<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>, ","<% } else { %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("show deleted"),"</a>, ","<% } %>","<% } %>","<% if( history.contents_active.hidden ){ %>","<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("show hidden"),"</a>","<% } %>","<% } %>"],"history");return n.extend(n.clone(I.prototype.templates),{counts:e,found:t})}(),t.default={HistoryViewEdit:L}}).call(t,i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(117),o=s(a),r=i(62),l=s(r),d=i(63),c=s(d),u=i(64),h=(s(u),i(119)),f=s(h),p=i(121),m=s(p),g=i(24),_=(s(g),i(113)),v=s(_),y=i(21),w=s(y),b=i(5),x=s(b),C=i(4),$=s(C);i(118);var k=o.default.ModelListPanel,S=k.extend({_logNamespace:"history",HDAViewClass:f.default.HDAListItemView,HDCAViewClass:m.default.HDCAListItemView,collectionClass:c.default.HistoryContents,modelCollectionKey:"contents",tagName:"div",className:k.prototype.className+" history-panel",emptyMsg:(0,$.default)("This history is empty"),noneFoundMsg:(0,$.default)("No matching datasets found"),searchPlaceholder:(0,$.default)("search datasets"),initialize:function(e){k.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_createDefaultCollection:function(){return new this.collectionClass([],{history:this.model})},freeModel:function(){return k.prototype.freeModel.call(this),this.model&&this.model.stopPolling(),this},_setUpListeners:function(){k.prototype._setUpListeners.call(this),this.on({error:function(e,t,i,n,s){this.errorHandler(e,t,i,n,s)},"views:ready view:attached view:removed":function(e){this._renderSelectButton()},"view:attached":function(e){this.scrollTo(0)}})},loadHistory:function(t,i,n){var s=this;return n=e.extend(n||{silent:!0}),this.info("loadHistory:",t,i,n),this.setModel(new l.default.History({id:t})),n.silent=!0,this.trigger("loading"),this.model.fetchWithContents(i,n).always(function(){s.render(),s.trigger("loading-done")})},refreshContents:function(e){return this.model?this.model.refresh(e):n.when()},_setUpCollectionListeners:function(){return k.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"fetching-more":function(){this._toggleContentsLoadingIndicator(!0),this.$emptyMessage().hide()},"fetching-more-done":function(){this._toggleContentsLoadingIndicator(!1)}})},_showLoadingIndicator:function(t,i,s){var a=n('<div class="loading-indicator"/>');this.$el.html(a.text(t).slideDown(e.isUndefined(i)?this.fxSpeed:i))},_hideLoadingIndicator:function(t){this.$(".loading-indicator").slideUp(e.isUndefined(t)?this.fxSpeed+200:t,function(){n(this).remove()})},_buildNewRender:function(){var e=k.prototype._buildNewRender.call(this);return this._renderSelectButton(e),e},_renderSelectButton:function(e){if(e=e||this.$el,!this.multiselectActions().length)return null;if(!this.views.length)return this.hideSelectors(),e.find(".controls .actions .show-selectors-btn").remove(),null;var t=e.find(".controls .actions .show-selectors-btn");return t.length?t:(0,w.default)({title:(0,$.default)("Operations on multiple datasets"),classes:"show-selectors-btn",faIcon:"fa-check-square-o"}).prependTo(e.find(".controls .actions"))},_renderEmptyMessage:function(e){var t=this.$emptyMessage(e);return this.model.get("contents_active").active<=0?t.empty().append(this.emptyMsg).show():this.searchFor&&this.model.contents.haveSearchDetails()&&!this.views.length?t.empty().append(this.noneFoundMsg).show():(t.hide(),n())},$scrollContainer:function(e){return this.$list(e)},_toggleContentsLoadingIndicator:function(e){e?this.$list().html('<div class="contents-loading-indicator"><span class="fa fa-2x fa-spinner fa-spin"/></div>'):this.$list().find(".contents-loading-indicator").remove()},renderItems:function(e){e=e||this.$el;var t=this.$list(e);n(".tooltip").remove(),t.empty(),this.views=[];var i=this._filterCollection();return i.length?(this._renderPagination(e),this.views=this._renderSomeItems(i,t)):e.find("> .controls .list-pagination").empty(),this._renderEmptyMessage(e).toggle(!i.length),this.trigger("views:ready",this.views),this.views},_renderPagination:function(e){var t=e.find("> .controls .list-pagination");return this.searchFor||!this.model.contents.shouldPaginate()?t.empty():(t.html(this.templates.pagination({current:this.model.contents.currentPage+1,last:this.model.contents.getLastPage()+1},this)),t.find("select.pages").tooltip(),t)},_renderSomeItems:function(e,t){var i=this,n=[];return t.append(e.map(function(e){var t=i._createItemView(e);return n.push(t),i._renderItemView$el(t)})),n},_filterItem:function(e){var t=this.model.contents;return(t.includeHidden||!e.hidden())&&(t.includeDeleted||!e.isDeletedOrPurged())&&k.prototype._filterItem.call(this,e)},_getItemViewClass:function(e){var t=e.get("history_content_type");switch(t){case"dataset":return this.HDAViewClass;case"dataset_collection":return this.HDCAViewClass}throw new TypeError("Unknown history_content_type: "+t)},_getItemViewOptions:function(t){var i=k.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,expanded:this.model.contents.storage.isExpanded(t.id),hasUser:this.model.ownedByCurrUser()})},_setUpItemViewListeners:function(e){var t=this;return k.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{expanded:function(e){t.model.contents.storage.addExpanded(e.model)},collapsed:function(e){t.model.contents.storage.removeExpanded(e.model)}})},collapseAll:function(){this.model.contents.storage.clearExpanded(),k.prototype.collapseAll.call(this)},getSelectedModels:function(){var e=k.prototype.getSelectedModels.call(this);return e.historyId=this.collection.historyId,e},events:e.extend(e.clone(k.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click > .controls .prev":"_clickPrevPage","click > .controls .next":"_clickNextPage","change > .controls .pages":"_changePageSelect","click .messages [class$=message]":"clearMessages"}),_clickPrevPage:function(e){this.model.stopPolling(),this.model.contents.fetchPrevPage()},_clickNextPage:function(e){this.model.stopPolling(),this.model.contents.fetchNextPage()},_changePageSelect:function(e){this.model.stopPolling();var t=n(e.currentTarget).val();this.model.contents.fetchPage(t)},toggleShowDeleted:function(e,t){e=void 0!==e?e:!this.model.contents.includeDeleted;var i=this.model.contents;return i.setIncludeDeleted(e,t),this.trigger("show-deleted",e),i.fetchCurrentPage({renderAll:!0}),e},toggleShowHidden:function(e,t,i){e=void 0!==e?e:!this.model.contents.includeHidden;var n=this.model.contents;return n.setIncludeHidden(e,i),this.trigger("show-hidden",e),n.fetchCurrentPage({renderAll:!0}),e},_firstSearch:function(e){var t=this;if(this.log("onFirstSearch",e),this.model.contents.haveSearchDetails())return void this.searchItems(e);this.$("> .controls .search-input").searchInput("toggle-loading"),this.searchFor=e;this.model.contents.progressivelyFetchDetails({silent:!0}).progress(function(e,i,n){t.renderItems(),t.trigger("search:loading-progress",i,n)}).always(function(){t.$el.find("> .controls .search-input").searchInput("toggle-loading")}).done(function(){t.searchItems(e,"force")})},clearSearch:function(e){var t=this;return this.searchFor?(this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.model.contents.fetchCurrentPage({silent:!0}).done(function(){t.renderItems()}),this):this},errorHandler:function(t,i,n){if(!i||0!==i.status||0!==i.readyState){if(this.error(t,i,n),e.isString(t)&&e.isString(i)){var s=t,a=i;return v.default.errorModal(s,a,n)}return i&&502===i.status?v.default.badGatewayErrorModal():v.default.ajaxErrorModal(t,i,n)}},clearMessages:function(t){return(e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget)).fadeOut(this.fxSpeed,function(){n(this).remove()}),this},scrollToHid:function(t){return this.scrollToItem(e.first(this.viewsWhereModel({hid:t})))},ordinalIndicator:function(e){var t=""+e;switch(t.charAt(t.length-1)){case"1":return t+"st";case"2":return t+"nd";case"3":return t+"rd";default:return t+"th"}},toString:function(){return"HistoryView("+(this.model?this.model.get("name"):"")+")"}});S.prototype.templates=function(){var t=function(){return'<div>\n            <div class="controls"></div>\n            <ul class="list-items"></ul>\n            <div class="empty-message infomessagesmall"></div>\',\n        </div>'},i=x.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- history.name %></div>',"</div>",'<div class="subtitle"></div>','<div class="history-size"><%- history.nice_size %></div>','<div class="actions"></div>','<div class="messages">',"<% if( history.deleted && history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been purged and deleted"),"</div>","<% } else if( history.deleted ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been deleted"),"</div>","<% } else if( history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been purged"),"</div>","<% } %>","<% if( history.message ){ %>",'<div class="<%= history.message.level || "info" %>messagesmall">',"<%= history.message.text %>","</div>","<% } %>","</div>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,$.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,$.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>",'<div class="list-pagination form-inline"></div>',"</div>"],"history"),n=x.default.wrapTemplate(['<button class="prev" <%- pages.current === 1 ? "disabled" : "" %>>previous</button>','<select class="pages form-control" ','title="',(0,$.default)("Click to open and select a page. Begin typing a page number to select it"),'">',"<% _.range( 1, pages.last + 1 ).forEach( function( i ){ %>",'<option value="<%- i - 1 %>" <%- i === pages.current ? "selected" : "" %>>',"<%- view.ordinalIndicator( i ) %> of <%- pages.last %> pages","</option>","<% }); %>","</select>",'<button class="next" <%- pages.current === pages.last ? "disabled" : "" %>>next</button>'],"pages");return e.extend(e.clone(k.prototype.templates),{el:t,controls:i,pagination:n})}(),t.default={HistoryView:S}}).call(t,i(1),i(0))},function(e,t,i){"use strict";function n(e,t){function i(){var i=['<div class="loading-indicator">','<div class="loading-indicator-text">','<span class="fa fa-spinner fa-spin fa-lg"></span>','<span class="loading-indicator-message">loading...</span>',"</div>","</div>"].join("\n"),n=o(i).hide().css(t.css||{position:"fixed"}),s=n.children(".loading-indicator-text");return t.cover?(n.css({"z-index":2,top:e.css("top"),bottom:e.css("bottom"),left:e.css("left"),right:e.css("right"),opacity:.5,"background-color":"white","text-align":"center"}),s=n.children(".loading-indicator-text").css({"margin-top":"20px"})):(s=n.children(".loading-indicator-text").css({margin:"12px 0px 0px 10px",opacity:"0.85",color:"grey"}),s.children(".loading-indicator-message").css({margin:"0px 8px 0px 0px","font-style":"italic"})),n}var n=this;return t=a.default.extend({cover:!1},t||{}),n.show=function(t,s,a){return t=t||"loading...",s=s||"fast",e.parent().find(".loading-indicator").remove(),n.$indicator=i().insertBefore(e),n.message(t),n.$indicator.fadeIn(s,a),n},n.message=function(e){n.$indicator.find("i").text(e)},n.hide=function(e,t){return e=e||"fast",n.$indicator&&n.$indicator.length?n.$indicator.fadeOut(e,function(){n.$indicator.remove(),t&&t()}):t&&t(),n},n}Object.defineProperty(t,"__esModule",{value:!0});var s=i(0),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=a.default;t.default=n},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(123),o=s(a),r=i(119),l=s(r),d=i(5),c=s(d),u=i(4),h=s(u),f=o.default.DatasetListItemEdit,p=f.extend({className:f.prototype.className+" history-content",_fetchModelDetails:function(){var t=this;return t.model.inReadyState()&&!t.model.hasDetails()?t.model.fetch({silent:!0}):t.model.has("rerunnable")?e.when():t.model.fetch({silent:!0,data:{keys:["rerunnable","creating_job"].join(",")}})},events:n.extend(n.clone(f.prototype.events),{"click .unhide-link":function(e){return this.model.unhide(),!1}}),toString:function(){return"HDAListItemEdit("+(this.model?""+this.model:"(no model)")+")"}});p.prototype.templates=function(){var e=n.extend({},f.prototype.templates.warnings,{hidden:c.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,h.default)("This dataset has been hidden"),'<br /><a class="unhide-link" a href="javascript:void(0);">',(0,h.default)("Unhide it"),"</a>","</div>","<% } %>"],"dataset")});return n.extend({},f.prototype.templates,{titleBar:l.default.HDAListItemView.prototype.templates.titleBar,warnings:e})}(),t.default={HDAListItemEdit:p}}).call(t,i(0),i(1))},function(e,t,i){"use strict";function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(121),a=n(s),o=i(259),r=n(o),l=i(21),d=n(l),c=i(4),u=n(c),h=a.default.HDCAListItemView,f=h.extend({_getFoldoutPanelClass:function(){return r.default.CollectionViewEdit},_renderPrimaryActions:function(){return this.log(this+"._renderPrimaryActions"),h.prototype._renderPrimaryActions.call(this).concat([this._renderDeleteButton()])},_renderDeleteButton:function(){var e=this,t=this.model.get("deleted");return(0,d.default)({title:t?(0,u.default)("Dataset collection is already deleted"):(0,u.default)("Delete"),classes:"delete-btn",faIcon:"fa-times",disabled:t,onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},toString:function(){return"HDCAListItemEdit("+(this.model?""+this.model:"(no model)")+")"}});t.default={HDCAListItemEdit:f}},function(e,t,i){"use strict";function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(122),a=n(s),o=i(60),r=(n(o),i(260)),l=n(r),d=i(5),c=(n(d),i(39)),u=n(c),h=i(21),f=(n(h),i(4)),p=n(f);i(20);var m=a.default.CollectionView,g=m.extend({DatasetDCEViewClass:l.default.DatasetDCEListItemEdit,NestedDCDCEViewClass:l.default.NestedDCDCEListItemEdit,getNestedDCDCEViewClass:function(){return l.default.NestedDCDCEListItemEdit.extend({foldoutPanelClass:g})},initialize:function(e){m.prototype.initialize.call(this,e)},_setUpBehaviors:function(e){if(e=e||this.$el,m.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()){this.tagsEditorShown=!0;var t=this;e.find("> .controls .name").attr("title",(0,p.default)("Click to rename collection")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var i=t.model.get("name");e&&e!==i?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(i)}}),this.tagsEditor=new u.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},usePrompt:!1}),this.tagsEditor.toggle(!0)}},toString:function(){return"CollectionViewEdit("+(this.model?this.model.get("name"):"")+")"}});t.default={CollectionViewEdit:g}},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(67),o=s(a),r=i(123),l=s(r),d=i(5),c=(s(d),i(4)),u=(s(c),o.default.DCListItemView),h=u.extend({initialize:function(e){u.prototype.initialize.call(this,e)},toString:function(){return"DCListItemEdit("+(this.model?""+this.model:"(no model)")+")"}}),f=o.default.DCEListItemView,p=f.extend({initialize:function(e){f.prototype.initialize.call(this,e)},toString:function(){return"DCEListItemEdit("+(this.model?""+this.model:"(no 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See the <a href="https://galaxyproject.org/learn/managing-datasets/" target="_blank">documentation</a> for tips on how to find all of the data in your account.</p>'}});t.default={View:h,Model:u}}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(3),o=(s(a),i(6)),r=s(o),l=i(11),d=s(l),c=i(88),u=s(c),h=e.Collection.extend({comparator:function(e,t){return e=e.get("name"),t=t.get("name"),e>t?1:e<t?-1:0}}),f=e.View.extend({initialize:function(t){var i=this,s=Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.model.id;this.model=new e.Model,this.model.url=Galaxy.root+"api/histories/"+s+"/custom_builds_metadata",this.collection=new h,this.collection.url=Galaxy.root+"api/users/"+Galaxy.user.id+"/custom_builds",this.message=new r.default.Message({}),this.installed_builds=new r.default.Select.View({optional:!0,onchange:function(){i.installed_builds.value(null)},empty_text:"List of available builds:",error_text:"No system installed builds available."}),this.table=new u.default.View({cls:"grid",selectable:!1}),this.table.addHeader("Name"),this.table.addHeader("Key"),this.table.addHeader("Number of chroms/contigs"),this.table.addHeader(""),this.table.appendHeader(),this.setElement(n("<div/>").append(n("<h4/>").text("Current Custom Builds")).append(this.table.$el).append(this.$installed=n("<div/>").append(n("<h4/>").text("System Installed Builds").addClass("ui-margin-top")).append(this.installed_builds.$el)).append(n("<h4/>").text("Add a Custom Build").addClass("ui-margin-top")).append(n("<span/>").addClass("ui-column").append(n("<div/>").addClass("ui-column-left").append(this.message.$el).append(this.$form=n("<div/>").addClass("ui-margin-top"))).append(this.$help=n("<div/>").addClass("ui-column-right")))),this.listenTo(this.collection,"add remove reset",function(){i._renderTable()}),this.listenTo(this.model,"change",function(){i._renderForm()}),this.collection.fetch(),this.model.fetch()},render:function(){this._renderTable(),this._renderForm()},_renderTable:function(){var e=this;this.table.delAll(),this.collection.sort(),this.collection.each(function(t){e.table.add(t.get("name")),e.table.add(t.id),e.table.add(void 0!==t.get("count")?t.get("count"):"Processing..."),e.table.add(new r.default.ButtonIcon({icon:"fa-trash-o",cls:"ui-button-icon-plain",tooltip:"Delete custom build.",onclick:function(){t.destroy()}}).$el),e.table.append(t.id)})},_renderForm:function(){var e=this,t=new d.default({inputs:[{type:"text",name:"name",label:"Name",help:"Specify a build name e.g. Hamster."},{type:"text",name:"id",label:"Key",help:"Specify a build key e.g. hamster_v1."},{name:"len",type:"conditional",test_param:{name:"type",label:"Definition",help:"Provide the data source.",type:"select",value:"fasta",data:[{value:"fasta",label:"FASTA-file from history"},{value:"file",label:"Len-file from disk"},{value:"text",label:"Len-file by copy/paste"}]},cases:[{value:"fasta",inputs:[{type:"select",name:"value",label:"FASTA-file",data:this.model.get("fasta_hdas")}]},{value:"file",inputs:[{type:"upload",name:"value",label:"Len-file",data:this.model.get("len_hdas")}]},{value:"text",inputs:[{type:"text",area:!0,name:"value",label:"Edit/Paste"}]}]}],buttons:{save:new r.default.Button({icon:"fa-save",tooltip:"Create new Build",title:"Save",cls:"btn btn-primary ui-clear-float",onclick:function(){var i=t.data.create();i.id&&i.name?e.collection.create(i,{wait:!0,success:function(t){t.get("message")?e.message.update({message:t.get("message"),status:"warning"}):e.message.update({message:"Successfully added a new custom build.",status:"success"})},error:function(t,i){var n=i&&i.responseJSON&&i.responseJSON.err_msg;e.message.update({message:n||"Failed to create custom build.",status:"danger"})}}):e.message.update({message:"All inputs are required.",status:"danger"})}})},onchange:function(){var i=t.data.match("len|type");if(i){var n=t.field_list[i];e._renderHelp(n.value())}}});this.$form.empty().append(t.$el);var i=this.model.get("installed_builds");i&&i.length?(this.$installed.show(),this.installed_builds.update(this.model.get("installed_builds"))):this.$installed.hide(),this._renderHelp("fasta")},_renderHelp:function(e){this.$help.empty().addClass("alert alert-info").html("fasta"==e?this._templateFasta():this._templateLen())},_templateLen:function(){return"<h4>Length Format</h4><p>The length format is two-column, separated by whitespace, of the form:<pre>chrom/contig   length of chrom/contig</pre></p><p>For example, the first few entries of <em>mm9.len</em> are as follows:<pre>chr1    197195432\nchr2    181748087\nchr3    159599783\nchr4    155630120\nchr5    152537259</pre></p><p>Trackster uses this information to populate the select box for chrom/contig, andto set the maximum basepair of the track browser. 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this.deferred.always(e)}},{key:"progress",value:function(e){return this.deferred.progress(e)}}],[{key:"create",value:function(e){return new t(e).deferred}}]),t}(),r=function(e){function t(e){s(this,t);var n=i(this,(t.__proto__||Object.getPrototypeOf(t)).call(this,e));return n.names={},n}return n(t,e),o(t,[{key:"add",value:function(e){if(!e.hasOwnProperty("name")||!e.hasOwnProperty("fn"))throw new Error('NamedAjaxQueue.add requires an object with both "name" and "fn": '+JSON.stringify(e));if(!this.names.hasOwnProperty(e.name))return this.names[e.name]=!0,a(t.prototype.__proto__||Object.getPrototypeOf(t.prototype),"add",this).call(this,e.fn)}},{key:"clear",value:function(){return this.names={},this}}],[{key:"create",value:function(e){return new t(e).deferred}}]),t}(l);t.default={AjaxQueue:l,NamedAjaxQueue:r}}).call(t,i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(65),l=a(o),r=i(256),d=a(r),c=i(5),u=a(c),h=i(3),f=a(h);i(118);var p=e.View.extend(u.default.LoggableMixin).extend({_logNamespace:"list",viewClass:l.default.ListItemView,collectionClass:e.Collection,tagName:"div",className:"list-panel",fxSpeed:"fast",emptyMsg:(0,f.default)("This list is empty"),noneFoundMsg:(0,f.default)("No matching items found"),searchPlaceholder:(0,f.default)("search"),initialize:function(e,t){e=e||{},e.logger&&(this.logger=e.logger),this.log(this+".initialize:",e),this.fxSpeed=n.has(e,"fxSpeed")?e.fxSpeed:this.fxSpeed,this.filters=[],this.searchFor=e.searchFor||"",this.selecting=void 0===e.selecting||e.selecting,this.selected=e.selected||[],this.lastSelected=null,this.dragItems=e.dragItems||!1,this.viewClass=e.viewClass||this.viewClass,this.views=[],this.collection=e.collection||this._createDefaultCollection(),this.filters=e.filters||[],this.$scrollContainer=e.$scrollContainer||this.$scrollContainer,this.title=e.title||"",this.subtitle=e.subtitle||"",this._setUpListeners()},_setUpListeners:function(){return this.off(),this.on({error:function(e,t,i,n,s){console.error(e,t,i,n,s)},loading:function(){this._showLoadingIndicator("loading...",40)},"loading-done":function(){this._hideLoadingIndicator(40)}}),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this._setUpCollectionListeners(),this._setUpViewListeners(),this},_createDefaultCollection:function(){return new this.collectionClass([])},_setUpCollectionListeners:function(){return this.log(this+"._setUpCollectionListeners",this.collection),this.stopListening(this.collection),this.listenTo(this.collection,{error:function(e,t,i,n,s){this.trigger("error",e,t,i,n,s)},update:function(e,t){var i=t.changes;return t.renderAll||i.added.length+i.removed.length>1?this.renderItems():1===i.added.length?this.addItemView(n.first(i.added),e,t):1===i.removed.length?this.removeItemView(n.first(i.removed),e,t):void 0}}),this},_setUpViewListeners:function(){this.log(this+"._setUpViewListeners"),this.on({"view:selected":function(e,t){if(t&&t.shiftKey&&this.lastSelected){var i=this.viewFromModelId(this.lastSelected);i&&this.selectRange(e,i)}else t&&t.altKey&&!this.selecting&&this.showSelectors();this.selected.push(e.model.id),this.lastSelected=e.model.id},"view:de-selected":function(e,t){this.selected=n.without(this.selected,e.model.id)}})},render:function(e){this.log(this+".render",e);var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){this.debug(this+"(ListPanel)._buildNewRender");var e=s(this.templates.el({},this));return this._renderControls(e),this._renderTitle(e),this._renderSubtitle(e),this._renderSearch(e),this.renderItems(e),e},_renderControls:function(e){this.debug(this+"(ListPanel)._renderControls");var t=s(this.templates.controls({},this));return e.find(".controls").replaceWith(t),t},_renderTitle:function(e){},_renderSubtitle:function(e){},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;i.log("_queueNewRender:",e,t),s(i).queue("fx",[function(e){i.$el.fadeOut(t,e)},function(t){i._swapNewRender(e),t()},function(e){i.$el.fadeIn(t,e)},function(e){i.trigger("rendered",i),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",this.className).append(e.children()),this.selecting&&this.showSelectors(0),this},_setUpBehaviors:function(e){return e=e||this.$el,this.$controls(e).find("[title]").tooltip(),this._renderMultiselectActionMenu(e),this},_renderMultiselectActionMenu:function(e){e=e||this.$el;var t=e.find(".list-action-menu"),i=this.multiselectActions();if(!i.length)return t.empty();var n=s(['<div class="list-action-menu btn-group">','<button class="list-action-menu-btn btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,f.default)("For all selected"),"...","</button>",'<ul class="dropdown-menu pull-right" role="menu">',"</ul>","</div>"].join("")),a=i.map(function(e){var t=['<li><a href="javascript:void(0);">',e.html,"</a></li>"].join("");return s(t).click(function(t){return t.preventDefault(),e.func(t)})});return n.find("ul").append(a),t.replaceWith(n),n},multiselectActions:function(){return[]},$scrollContainer:function(e){return(e||this.$el).parent().parent()},$controls:function(e){return(e||this.$el).find("> .controls")},$list:function(e){return(e||this.$el).find("> .list-items")},$messages:function(e){return(e||this.$el).find("> .controls .messages")},$emptyMessage:function(e){return(e||this.$el).find("> .empty-message")},renderItems:function(e){e=e||this.$el;var t=this;t.log(this+".renderItems",e);var i=t.$list(e);t.freeViews();var n=t._filterCollection();return t.views=n.map(function(e){return t._createItemView(e)}),i.empty(),t.views.length&&t._attachItems(e),t._renderEmptyMessage(e).toggle(!t.views.length),t.trigger("views:ready",t.views),t.views},_filterCollection:function(){var e=this;return e.collection.filter(n.bind(e._filterItem,e))},_filterItem:function(e){var t=this;return n.every(t.filters.map(function(t){return t.call(e)}))&&(!t.searchFor||e.matchesAll(t.searchFor))},_createItemView:function(e){var t=this._getItemViewClass(e),i=n.extend(this._getItemViewOptions(e),{model:e}),s=new t(i);return this._setUpItemViewListeners(s),s},_destroyItemView:function(e){this.stopListening(e),this.views=n.without(this.views,e)},_destroyItemViews:function(e){var t=this;return t.views.forEach(function(e){t.stopListening(e)}),t.views=[],t},freeViews:function(){return this._destroyItemViews()},_getItemViewClass:function(e){return this.viewClass},_getItemViewOptions:function(e){return{fxSpeed:this.fxSpeed,expanded:!1,selectable:this.selecting,selected:n.contains(this.selected,e.id),draggable:this.dragItems}},_setUpItemViewListeners:function(e){var t=this;return this.listenTo(e,"all",function(){var e=Array.prototype.slice.call(arguments,0);e[0]="view:"+e[0],t.trigger.apply(t,e)}),this.listenTo(e,"draggable:dragstart",function(e,t){var i={},n=this.getSelectedModels();i=n.length?n.toJSON():[t.model.toJSON()],e.dataTransfer.setData("text",JSON.stringify(i))},this),t},_attachItems:function(e){var t=this;return this.$list(e).append(this.views.map(function(e){return t._renderItemView$el(e)})),this},_renderItemView$el:function(e){return e.render(0).$el},_renderEmptyMessage:function(e){this.debug("_renderEmptyMessage",e,this.searchFor);var t=this.searchFor?this.noneFoundMsg:this.emptyMsg;return this.$emptyMessage(e).text(t)},expandAll:function(){n.each(this.views,function(e){e.expand()})},collapseAll:function(){n.each(this.views,function(e){e.collapse()})},addItemView:function(e,t,i){var n=this,a=n._filterCollection().indexOf(e);if(-1!==a){var o=n._createItemView(e);return s(o).queue("fx",[function(e){n.$emptyMessage().is(":visible")?n.$emptyMessage().fadeOut(n.fxSpeed,e):e()},function(e){n._attachView(o,a),e()}]),o}},_attachView:function(e,t,i){i=!!n.isUndefined(i)||i,t=t||0;var s=this;return s.views.splice(t,0,e),s._insertIntoListAt(t,s._renderItemView$el(e).hide()),s.trigger("view:attached",e),i?e.$el.slideDown(s.fxSpeed,function(){s.trigger("view:attached:rendered")}):(e.$el.show(),s.trigger("view:attached:rendered")),e},_insertIntoListAt:function(e,t){var i=this.$list();return 0===e?i.prepend(t):i.children().eq(e-1).after(t),t},removeItemView:function(e,t,i){var a=this,o=n.find(a.views,function(t){return t.model===e});if(o)return a.views=n.without(a.views,o),a.trigger("view:removed",o),s({}).queue("fx",[function(e){o.$el.fadeOut(a.fxSpeed,e)},function(e){o.remove(),a.trigger("view:removed:rendered"),a.views.length?e():a._renderEmptyMessage().fadeIn(a.fxSpeed,e)}]),o},viewFromModelId:function(e){return n.find(this.views,function(t){return t.model.id===e})},viewFromModel:function(e){return e?this.viewFromModelId(e.id):void 0},viewsWhereModel:function(e){return this.views.filter(function(t){return n.isMatch(t.model.attributes,e)})},viewRange:function(e,t){if(e===t)return e?[e]:[];var i=this.views.indexOf(e),n=this.views.indexOf(t);return-1===i||-1===n?i===n?[]:-1===i?[t]:[e]:i<n?this.views.slice(i,n+1):this.views.slice(n,i+1)},_renderSearch:function(e){return e.find(".controls .search-input").searchInput({placeholder:this.searchPlaceholder,initialVal:this.searchFor,onfirstsearch:n.bind(this._firstSearch,this),onsearch:n.bind(this.searchItems,this),onclear:n.bind(this.clearSearch,this)}),e},_firstSearch:function(e){return this.log("onFirstSearch",e),this.searchItems(e)},searchItems:function(e,t){if(this.log("searchItems",e,this.searchFor,t),!t&&this.searchFor===e)return this;this.searchFor=e,this.renderItems(),this.trigger("search:searching",e,this);var i=this.$("> .controls .search-query");return i.val()!==e&&i.val(e),this},clearSearch:function(e){return this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.renderItems(),this},THROTTLE_SELECTOR_FX_AT:20,showSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!0,this.$(".list-actions").slideDown(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.showSelector(e)})},hideSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!1,this.$(".list-actions").slideUp(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.hideSelector(e)}),this.selected=[],this.lastSelected=null},toggleSelectors:function(){this.selecting?this.hideSelectors():this.showSelectors()},selectAll:function(e){n.each(this.views,function(t){t.select(e)})},deselectAll:function(e){this.lastSelected=null,n.each(this.views,function(t){t.deselect(e)})},selectRange:function(e,t){var i=this.viewRange(e,t);return n.each(i,function(e){e.select()}),i},getSelectedViews:function(){return n.filter(this.views,function(e){return e.selected})},getSelectedModels:function(){return new this.collection.constructor(n.map(this.getSelectedViews(),function(e){return e.model}))},_showLoadingIndicator:function(e,t,i){this.debug("_showLoadingIndicator",this.indicator,e,t,i),t=void 0!==t?t:this.fxSpeed,this.indicator||(this.indicator=new d.default(this.$el),this.debug("\t created",this.indicator)),this.$el.is(":visible")?(this.$el.fadeOut(t),this.indicator.show(e,t,i)):this.indicator.show(0,i)},_hideLoadingIndicator:function(e,t){this.debug("_hideLoadingIndicator",this.indicator,e,t),e=void 0!==e?e:this.fxSpeed,this.indicator&&this.indicator.hide(e,t)},scrollPosition:function(){return this.$scrollContainer().scrollTop()},scrollTo:function(e,t){return t=t||0,this.$scrollContainer().animate({scrollTop:e},t),this},scrollToTop:function(e){return this.scrollTo(0,e)},scrollToItem:function(e,t){return this},scrollToId:function(e,t){return this.scrollToItem(this.viewFromModelId(e),t)},events:{"click .select-all":"selectAll","click .deselect-all":"deselectAll"},toString:function(){return"ListPanel("+this.collection+")"}});p.prototype.templates=function(){return{el:u.default.wrapTemplate(["<div>",'<div class="controls"></div>','<div class="list-items"></div>','<div class="empty-message infomessagesmall"></div>',"</div>"]),controls:u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- view.title %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"])}}();var m=p.extend({modelCollectionKey:"contents",initialize:function(e){p.prototype.initialize.call(this,e),this.selecting=void 0!==e.selecting&&e.selecting,this.setModel(this.model,e)},setModel:function(e,t){if(t=t||{},this.debug(this+".setModel:",e,t),this.freeModel(),this.freeViews(),e){var i=this.model?this.model.get("id"):null;this.model=e,this.logger&&(this.model.logger=this.logger),this._setUpModelListeners(),this.stopListening(this.collection),this.collection=this.model[this.modelCollectionKey]||t.collection||this._createDefaultCollection(),this._setUpCollectionListeners(),i&&e.get("id")!==i&&this.trigger("new-model",this)}return this},freeModel:function(){return this.model&&this.stopListening(this.model),this},_setUpModelListeners:function(){return this.log(this+"._setUpModelListeners",this.model),this.listenTo(this.model,"error",function(){var e=Array.prototype.slice.call(arguments,0);e.unshift("error"),this.trigger.apply(this,e)},this),this.logger&&this.listenTo(this.model,"all",function(e){this.info(this+"(model)",e,arguments)}),this},_renderControls:function(e){this.debug(this+"(ModelListPanel)._renderControls");var t=this.model?this.model.toJSON():{},i=s(this.templates.controls(t,this));return e.find(".controls").replaceWith(i),i},toString:function(){return"ModelListPanel("+this.model+")"}});m.prototype.templates=function(){var e=u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- model.name %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"]);return n.extend(n.clone(p.prototype.templates),{controls:e})}(),t.default={ListPanel:p,ModelListPanel:m}}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";function n(e,t){function i(e){o(this).parent().children("input").val("").trigger("searchInput.clear").blur(),t.onclear()}function n(e,n){if(!n)return i();o(this).trigger("search.search",n),"function"==typeof t.onfirstsearch&&u?(u=!1,t.onfirstsearch(n)):t.onsearch(n)}function s(){return['<input type="text" name="',t.name,'" placeholder="',t.placeholder,'" ','class="search-query ',t.classes,'" ',"/>"].join("")}var r=27,d=13,c=o(e),u=!0,h={initialVal:"",name:"search",placeholder:"search",classes:"",onclear:function(){},onfirstsearch:null,onsearch:function(e){},minSearchLen:0,escWillClear:!0,oninit:function(){}};return"string"===a.default.type(t)?("toggle-loading"===t&&function(){c.find(".search-loading").toggle(),c.find(".search-clear").toggle()}(),c):("object"===a.default.type(t)&&(t=a.default.extend(!0,{},h,t)),c.addClass("search-input").prepend([function(){return o(s()).focus(function(e){o(this).select()}).keyup(function(e){if(e.preventDefault(),e.stopPropagation(),e.which===r&&t.escWillClear)i.call(this,e);else{var s=o(this).val();(e.which===d||t.minSearchLen&&s.length>=t.minSearchLen)&&n.call(this,e,s)}}).val(t.initialVal)}(),function(){return o(['<span class="search-clear fa fa-times-circle" ','title="',l("clear search (esc)"),'"></span>'].join("")).tooltip({placement:"bottom"}).click(function(e){i.call(this,e)})}(),function(){return o(['<span class="search-loading fa fa-spinner fa-spin" ','title="',l("loading..."),'"></span>'].join("")).hide().tooltip({placement:"bottom"})}()]))}var s=i(0),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=a.default,l=window._l||function(e){return e};a.default.fn.extend({searchInput:function(e){return this.each(function(){return n(this,e)})}})},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(66),a=n(s),o=i(5),l=n(o),r=i(120),d=n(r),c=i(3),u=n(c),h=a.default.DatasetListItemView,f=h.extend({className:h.prototype.className+" history-content",initialize:function(e,t){h.prototype.initialize.call(this,e,t)},toString:function(){return"HDAListItemView("+(this.model?""+this.model:"(no model)")+")"}});f.prototype.templates=function(){var t=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+"</span>\n            </div>\n            </br>\n            "+d.default.nametagTemplate(t)+"\n        </div>\n    "},i=e.extend({},h.prototype.templates.warnings,{hidden:l.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,u.default)("This dataset has been hidden"),"</div>","<% } %>"],"dataset")});return e.extend({},h.prototype.templates,{titleBar:t,warnings:i})}(),t.default={HDAListItemView:f}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function i(t){return 0==t.indexOf("name:")?'<span class="label label-info">'+e.escape(t.slice(5))+"</span>":""}function n(t){return'<span class="nametags">'+e.sortBy(e.uniq(t.tags)).map(i).join("")+"</span>"}Object.defineProperty(t,"__esModule",{value:!0}),t.default={nametagTemplate:n}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(16),a=n(s),o=i(67),l=n(o),r=i(122),d=n(r),c=i(5),u=(n(c),i(120)),h=n(u),f=i(3),p=n(f),m=l.default.DCListItemView,g=m.extend({className:m.prototype.className+" history-content",_setUpListeners:function(){var e=this;m.prototype._setUpListeners.call(this);var t=function(t,i){e.render()};this.model.jobStatesSummary&&this.listenTo(this.model.jobStatesSummary,"change",t),this.listenTo(this.model,{"change:tags change:visible change:state":t})},_getFoldoutPanelClass:function(){return d.default.CollectionView},_swapNewRender:function(e){m.prototype._swapNewRender.call(this,e);var t,i=this.model.jobStatesSummary;t=i?i.new()?"loading":i.errored()?"error":i.terminal()?"ok":i.running()?"running":"queued":this.model.get("job_source_id")?"loading":this.model.get("populated_state")?a.default.OK:a.default.RUNNING,this.$el.addClass("state-"+t);var n=this.stateDescription();return this.$(".state-description").html(n),this.$el},stateDescription:function(){var e=this.model,t=(e.get("element_count"),e.get("job_source_type")),i=(this.model.get("collection_type"),d.default.collectionTypeDescription(e)),n=d.default.collectionDescription(e),s=e.jobStatesSummary;if(t&&"Job"!=t){if(s&&s.hasDetails()){var a=s.new(),o=a?null:s.jobCount();if(a)return'\n                        <div class="progress state-progress">\n                            <span class="note">Creating jobs.<span class="blinking">..</span></span>\n                            <div class="progress-bar info" style="width:100%">\n                        </div>';if(s.errored()){return"a "+i+" with "+s.numInError()+" / "+o+" jobs in error"}if(s.terminal())return n;var l=s.states().running||0,r=s.states().ok||0,c=r/(1*o),u=l/(1*o),h=1-c-u;return'\n                        <div class="progress state-progress">\n                            <span class="note">'+(o&&o>1?o+" jobs":"a job")+" generating a "+i+'</span>\n                            <div class="progress-bar ok" style="width:'+100*c+'%"></div>\n                            <div class="progress-bar running" style="width:'+100*u+'%"></div>\n                            <div class="progress-bar new" style="width:'+100*h+'%">\n                        </div>'}return'\n                    <div class="progress state-progress">\n                        <span class="note">Loading job data for '+i+'.<span class="blinking">..</span></span>\n                        <div class="progress-bar info" style="width:100%">\n                    </div>'}return n},toString:function(){return"HDCAListItemView("+(this.model?""+this.model:"(no model)")+")"}});g.prototype.templates=function(){var t=e.extend({},m.prototype.templates.warnings,{hidden:function(e){e.visible||(0,p.default)("This collection has been hidden")}}),i=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+'</span>\n            </div>\n            <div class="state-description">\n            </div>\n            '+h.default.nametagTemplate(t)+"\n        </div>\n    "};return e.extend({},m.prototype.templates,{warnings:t,titleBar:i})}(),t.default={HDCAListItemView:g}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}function s(e){var t=e.get("collection_type");return"list"==t?(0,f.default)("list"):"paired"==t?(0,f.default)("dataset pair"):"list:paired"==t?(0,f.default)("list of pairs"):(0,f.default)("nested list")}function a(e){var t=e.get("element_count"),i="a "+s(e);if(t){var n;1==t?n="with 1 item":t&&(n="with "+t+" items"),i=i+" "+(0,f.default)(n)}return i}Object.defineProperty(t,"__esModule",{value:!0});var o=i(117),l=n(o),r=i(60),d=(n(r),i(67)),c=n(d),u=i(5),h=(n(u),i(3)),f=n(h),p=l.default.ModelListPanel,m=p.extend({_logNamespace:"collections",className:p.prototype.className+" dataset-collection-panel",DatasetDCEViewClass:c.default.DatasetDCEListItemView,modelCollectionKey:"elements",initialize:function(e){p.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,this.panelStack=[],this.parentName=e.parentName,this.foldoutStyle=e.foldoutStyle||"foldout",this.downloadUrl=Galaxy.root+"api/dataset_collections/"+this.model.attributes.id+"/download"},getNestedDCDCEViewClass:function(){return c.default.NestedDCDCEListItemView.extend({foldoutPanelClass:m})},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;this.handleWarning(e),i.log("_queueNewRender:",e,t),i._swapNewRender(e),i.trigger("rendered",i)},handleWarning:function(e){var t=this.views.length,i=this.model.get("element_count");if(i&&i!==t){var n=(0,f.default)("displaying only "+t+" of "+i+" items");e.find(".elements-warning").html('<div class="warningmessagesmall">'+n+"</div>")}},_filterCollection:function(){return this.model.getVisibleContents()},_getItemViewClass:function(e){switch(e.get("element_type")){case"hda":return this.DatasetDCEViewClass;case"dataset_collection":return this.getNestedDCDCEViewClass()}throw new TypeError("Unknown element type:",e.get("element_type"))},_getItemViewOptions:function(t){var i=p.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,hasUser:this.hasUser,foldoutStyle:this.foldoutStyle})},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}}),this},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$("> .controls").add(this.$list()).hide(),e.parentName=this.model.get("name"),this.$el.append(e.render().$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.render()},events:{"click .navigation .back":"close"},close:function(e){this.remove(),this.trigger("close")},toString:function(){return"CollectionView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=function(t,i){var n=a(i.model);return'\n        <div class="controls">\n            <div class="navigation">\n            <a class="back" href="javascript:void(0)">\n                <span class="fa fa-icon fa-angle-left"></span>\n                '+(0,f.default)("Back to ")+"\n                "+e.escape(i.parentName)+'\n            </a>\n            </div>\n            <div class="title">\n                <div class="name">'+(e.escape(t.name)||e.escape(t.element_identifier))+'</div>\n                <div class="subtitle">\n                    '+n+'\n                </div>\n            </div>\n            <div class="elements-warning">\n            </div>\n            <div class="tags-display"></div>\n            <div class="actions">\n                <a class="download-btn icon-btn" href="'+i.downloadUrl+'"\n                   title="" download="" data-original-title="Download Collection">\n                   <span class="fa fa-floppy-o"></span>\n                </a>\n            </div>\n        </div>'};return e.extend(e.clone(p.prototype.templates),{controls:t})}(),t.default={collectionTypeDescription:s,collectionDescription:a,CollectionView:m}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(16),o=s(a),l=i(66),r=s(l),d=i(39),c=s(d),u=i(124),h=s(u),f=i(21),p=s(f),m=i(5),g=s(m),_=i(3),v=s(_),y=r.default.DatasetListItemView,w=y.extend({initialize:function(e){y.prototype.initialize.call(this,e),this.hasUser=e.hasUser,this.purgeAllowed=e.purgeAllowed||!1,this.tagsEditorShown=e.tagsEditorShown||!1,this.annotationEditorShown=e.annotationEditorShown||!1},_renderPrimaryActions:function(){var e=y.prototype._renderPrimaryActions.call(this);return this.model.get("state")===o.default.NOT_VIEWABLE?e:y.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){var t=this;if(this.model.get("state")===o.default.DISCARDED||!this.model.get("accessible"))return null;var i=this.model.get("purged"),n=this.model.get("deleted"),s={title:(0,v.default)("Edit attributes"),href:Galaxy.root+"datasets/edit?dataset_id="+this.model.attributes.id,faIcon:"fa-pencil",classes:"edit-btn",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/edit",{dataset_id:t.model.attributes.id}))}};return n||i?(s.disabled=!0,i?s.title=(0,v.default)("Cannot edit attributes of datasets removed from disk"):n&&(s.title=(0,v.default)("Undelete dataset to edit attributes"))):e.contains([o.default.UPLOAD,o.default.NEW],this.model.get("state"))&&(s.disabled=!0,s.title=(0,v.default)("This dataset is not yet editable")),(0,p.default)(s)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var e=this,t=this.model.isDeletedOrPurged();return(0,p.default)({title:t?(0,v.default)("Dataset is already deleted"):(0,v.default)("Delete"),disabled:t,faIcon:"fa-times",classes:"delete-btn",onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},_renderDetails:function(){var t=y.prototype._renderDetails.call(this),i=this.model.get("state");return!this.model.isDeletedOrPurged()&&e.contains([o.default.OK,o.default.FAILED_METADATA],i)&&(this._renderTags(t),this._renderAnnotation(t),this._makeDbkeyEditLink(t)),this._setUpBehaviors(t),t},_renderToolHelpButton:function(){var e=this.model.attributes.dataset_id,t=this.model.attributes.creating_job,i=this,s=function(t){var s='<div id="thdiv-'+e+'" class="toolhelp">';t.name&&t.help?(s+="<strong>Tool help for "+t.name+"</strong><hr/>",s+=t.help):s+="<strong>Tool help is unavailable for this dataset.</strong><hr/>",s+="</div>",i.$el.find(".details").append(n.parseHTML(s))},a=function(e){n.ajax({url:Galaxy.root+"api/tools/"+e.tool_id+"/build"}).done(function(e){s(e)}).fail(function(){s({})})};return null===Galaxy.user.id?null:(0,p.default)({title:(0,v.default)("Tool Help"),classes:"icon-btn",href:"#",faIcon:"fa-question",onclick:function(){i.$el.find(".toolhelp").length>0?i.$el.find(".toolhelp").toggle():n.ajax({url:Galaxy.root+"api/jobs/"+t}).done(function(e){a(e)}).fail(function(){console.log('Failed at recovering job information from the  Galaxy API for job id "'+t+'".')})}})},_renderSecondaryActions:function(){var e=y.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case o.default.UPLOAD:case o.default.NOT_VIEWABLE:return e;case o.default.ERROR:return e.unshift(this._renderErrButton()),e.concat([this._renderRerunButton(),this._renderToolHelpButton()]);case o.default.OK:case o.default.FAILED_METADATA:return e.concat([this._renderRerunButton(),this._renderVisualizationsButton(),this._renderToolHelpButton()])}return e.concat([this._renderRerunButton(),this._renderToolHelpButton()])},_renderErrButton:function(){var e=this;return(0,p.default)({title:(0,v.default)("View or report this error"),href:Galaxy.root+"datasets/error?dataset_id="+this.model.attributes.id,classes:"report-error-btn",faIcon:"fa-bug",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("datasets/error",{dataset_id:e.model.attributes.id}))}})},_renderRerunButton:function(){var e=this.model.get("creating_job");if(this.model.get("rerunnable"))return(0,p.default)({title:(0,v.default)("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("/",{job_id:e}))}})},_renderVisualizationsButton:function(){var t=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||e.isEmpty(t))return null;if(!e.isObject(t[0]))return this.warn("Visualizations have been switched off"),null;var i=n(this.templates.visualizations(t,this));return i.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(i.find(".visualization-link").addBack(".visualization-link")),i},_addScratchBookFn:function(e){e.click(function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,v.default)("Visualization"),url:n(this).attr("href")}),e.preventDefault(),e.stopPropagation())})},_renderTags:function(e){if(this.hasUser){var t=this;this.tagsEditor=new c.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.tagsEditorShown=!0},onhide:function(){t.tagsEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(e){if(this.hasUser){var t=this;this.annotationEditor=new h.default.AnnotationEditor({model:this.model,el:e.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.annotationEditorShown=!0},onhide:function(){t.annotationEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(e){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var t=n('<a class="value">?</a>').attr("href",this.model.urls.edit).attr("target","_top");e.find(".dbkey .value").replaceWith(t)}},events:e.extend(e.clone(y.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(e){this.trigger("edit",this,e)},"click .delete-btn":function(e){this.trigger("delete",this,e)},"click .rerun-btn":function(e){this.trigger("rerun",this,e)},"click .report-err-btn":function(e){this.trigger("report-err",this,e)},"click .visualization-btn":function(e){this.trigger("visualize",this,e)},"click .dbkey a":function(e){this.trigger("edit",this,e)}}),_clickUndeleteLink:function(e){return this.model.undelete(),!1},_clickPurgeLink:function(e){return confirm((0,v.default)("This will permanently remove the data in your dataset. Are you sure?"))&&this.model.purge(),!1},toString:function(){return"HDAEditView("+(this.model?""+this.model:"(no model)")+")"}});w.prototype.templates=function(){var t=e.extend({},y.prototype.templates.warnings,{failed_metadata:g.default.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','<div class="failed_metadata-warning warningmessagesmall">',(0,v.default)("An error occurred setting the metadata for this dataset"),'<br /><a href="<%- dataset.urls.edit %>" target="_top">',(0,v.default)("Set it manually or retry auto-detection"),"</a>","</div>","<% } %>"],"dataset"),deleted:g.default.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,v.default)("This dataset has been deleted"),'<br /><a class="undelete-link" href="javascript:void(0);">',(0,v.default)("Undelete it"),"</a>","<% if( view.purgeAllowed ){ %>",'<br /><a class="purge-link" href="javascript:void(0);">',(0,v.default)("Permanently remove it from disk"),"</a>","<% } %>","</div>","<% } %>"],"dataset")}),i=g.default.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'<a class="visualization-link icon-btn" href="<%- visualizations[0].href %>"',' target="<%- visualizations[0].target %>" title="',(0,v.default)("Visualize in"),' <%- visualizations[0].html %>">','<span class="fa fa-bar-chart-o"></span>',"</a>","<% } else { %>",'<div class="visualizations-dropdown dropdown icon-btn">','<a data-toggle="dropdown" title="',(0,v.default)("Visualize"),'">','<span class="fa fa-bar-chart-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu">',"<% _.each( visualizations, function( visualization ){ %>",'<li><a class="visualization-link" href="<%- visualization.href %>"',' target="<%- visualization.target %>">',"<%- visualization.html %>","</a></li>","<% }); %>","</ul>","</div>","<% } %>"],"visualizations");return e.extend({},y.prototype.templates,{warnings:t,visualizations:i})}(),t.default={DatasetListItemEdit:w}}).call(t,i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(5),o=s(a),l=i(3),r=s(l);i(20);var d=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(e){e=e||{},this.tooltipConfig=e.tooltipConfig||{placement:"bottom"},this.listenTo(this.model,"change:annotation",function(){this.render()}),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.$el.html(this._template()),this.$annotation().make_text_editable({use_textarea:!0,on_finish:function(t){e.$annotation().text(t),e.model.save({annotation:t},{silent:!0}).fail(function(){e.$annotation().text(e.model.previous("annotation"))})}}),this},_template:function(){var e=this.model.get("annotation");return['<label class="prompt">',(0,r.default)("Annotation"),"</label>",'<div class="annotation">',n.escape(e),"</div>"].join("")},$annotation:function(){return this.$el.find(".annotation")},remove:function(){this.$annotation.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["AnnotationEditor(",""+this.model,")"].join("")}});t.default={AnnotationEditor:d}}).call(t,i(2),i(1))},,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,function(e,t,i){"use strict";(function(e){function t(e){return e&&e.__esModule?e:{default:e}}var 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n=r.default.extend({routes:{"(/)":"home","(/)root*":"home","(/)tours(/)(:tour_id)":"show_tours","(/)user(/)":"show_user","(/)user(/)(:form_id)":"show_user_form","(/)pages(/)create(/)":"show_pages_create","(/)pages(/)edit(/)":"show_pages_edit","(/)pages(/)(:action_id)":"show_pages","(/)visualizations(/)edit(/)":"show_visualizations_edit","(/)visualizations/(:action_id)":"show_visualizations","(/)workflows/import_workflow":"show_import_workflow","(/)workflows/run(/)":"show_run","(/)workflows(/)list":"show_workflows","(/)workflows/list_published(/)":"show_workflows_published","(/)workflows/create(/)":"show_workflows_create","(/)histories(/)citations(/)":"show_history_citations","(/)histories(/)rename(/)":"show_histories_rename","(/)histories(/)import(/)":"show_histories_import","(/)histories(/)permissions(/)":"show_histories_permissions","(/)histories(/)(:action_id)":"show_histories","(/)datasets(/)list(/)":"show_datasets","(/)custom_builds":"show_custom_builds","(/)datasets/edit":"show_dataset_edit_attributes","(/)datasets/error":"show_dataset_error"},require_login:["show_user","show_user_form","show_workflows"],authenticate:function(e,t){return Galaxy.user&&Galaxy.user.id||-1==this.require_login.indexOf(t)},show_tours:function(e){e?$.default.giveTour(e):this.page.display(new $.default.ToursView)},show_user:function(){this.page.display(new w.default.View)},show_user_form:function(e){var t=new w.default.Model({user_id:Galaxy.params.id});this.page.display(new v.default.View(t.get(e)))},show_visualizations:function(e){this.page.display(new P.default.View({action_id:e,plural:"Visualizations",item:"visualization"}))},show_visualizations_edit:function(){this.page.display(new v.default.View({url:"visualization/edit?id="+G.default.get("id"),redirect:"visualizations/list"}))},show_workflows_published:function(){this.page.display(new S.default({url_base:Galaxy.root+"workflow/list_published",dict_format:!0}))},show_histories:function(e){this.page.display(new L.default.View({action_id:e}))},show_history_citations:function(){var e=Q.default.extend(q.default),t=document.createElement("div");this.page.display(t),new e({propsData:{id:G.default.get("id"),source:"histories"}}).$mount(t)},show_histories_rename:function(){this.page.display(new v.default.View({url:"history/rename?id="+G.default.get("id"),redirect:"histories/list"}))},show_histories_import:function(){var e=Q.default.extend(M.default),t=document.createElement("div");this.page.display(t),(new e).$mount(t)},show_histories_permissions:function(){this.page.display(new v.default.View({url:"history/permissions?id="+G.default.get("id"),redirect:"histories/list"}))},show_datasets:function(){this.page.display(new S.default({url_base:Galaxy.root+"dataset/list",dict_format:!0}))},show_pages:function(e){this.page.display(new P.default.View({action_id:e,plural:"Pages",item:"page"}))},show_pages_create:function(){this.page.display(new v.default.View({url:"page/create",redirect:"pages/list"}))},show_pages_edit:function(){this.page.display(new v.default.View({url:"page/edit?id="+G.default.get("id"),redirect:"pages/list"}))},show_workflows:function(){this.page.display(new D.default.View)},show_workflows_create:function(){this.page.display(new v.default.View({url:"workflow/create",redirect:"workflow/editor"}))},show_run:function(){this._loadWorkflow()},show_import_workflow:function(){this.page.display(new D.default.ImportWorkflowView)},show_custom_builds:function(){var e=this,t=this.page.historyPanel.historyView;if(!t||!t.model||!t.model.id)return void window.setTimeout(function(){e.show_custom_builds()},500);this.page.display(new x.default.View)},show_dataset_edit_attributes:function(){this.page.display(new W.default.View)},show_dataset_error:function(){this.page.display(new R.default.View)},home:function(e){e.tool_id||e.job_id?"upload1"===e.tool_id?(this.page.toolPanel.upload.show(),this._loadCenterIframe("welcome")):this._loadToolForm(e):e.workflow_id?this._loadWorkflow():e.m_c?this._loadCenterIframe(e.m_c+"/"+e.m_a):this._loadCenterIframe("welcome")},_loadToolForm:function(e){e.id=decodeURIComponent(e.tool_id),this.page.display(new g.default.View(e))},_loadCenterIframe:function(e,t){t=t||Galaxy.root,e=t+e,this.page.$("#galaxy_main").prop("src",e)},_loadWorkflow:function(){var e=this;H.default.get({url:Galaxy.root+"api/workflows/"+H.default.getQueryString("id")+"/download?style=run",success:function(t){e.page.display(new N.default.View(t))},error:function(t){var i=t.err_msg||"Error occurred while loading the resource.",n={message:i,status:"danger",persistent:!0};e.page.display(new U.default.Message(n))}})}});K(function(){Galaxy.page=new p.default.View(e.extend(t,{Left:c.default,Right:h.default,Router:n}))})}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(85),o=s(a),l=i(241),r=s(l),d=i(3),c=s(d),u=i(111),h=(s(u),e.View.extend({initialize:function(t,i){var n=i.config;this.root=i.root,this.stored_workflow_menu_entries=n.stored_workflow_menu_entries||[];var s=new o.default.ToolSearch({hidden:!1}),a=new o.default.ToolCollection(n.toolbox);this.tool_panel=new o.default.ToolPanel({tool_search:s,tools:a,layout:n.toolbox_in_panel}),this.tool_panel_view=new o.default.ToolPanelView({model:this.tool_panel}),this.upload_button=new r.default({nginx_upload_path:n.nginx_upload_path,ftp_upload_site:n.ftp_upload_site,default_genome:n.default_genome,default_extension:n.default_extension}),Galaxy.upload=this.upload_button,this.model=new e.Model({title:(0,c.default)("Tools"),buttons:[this.upload_button]}),this.setElement(this._template())},render:function(){var e=this;this.tool_panel.get("layout").size()>0&&(this.$el.prepend(this.tool_panel_view.$el),this.tool_panel_view.render()),e.$("#internal-workflows").append(e._templateAllWorkflow({title:(0,c.default)("All workflows"),href:"workflow"})),n.each(this.stored_workflow_menu_entries,function(t){e.$("#internal-workflows").append(e._templateWorkflowLink({title:t.stored_workflow.name,href:"workflows/run?id="+t.encoded_stored_workflow_id}))})},_templateTool:function(e){return['<div class="toolTitle">','<a href="',this.root,e.href,'" target="galaxy_main">',e.title,"</a>","</div>"].join("")},_templateAllWorkflow:function(e){return['<div class="toolTitle">','<a href="',Galaxy.root,e.href,'">',e.title,"</a>","</div>"].join("")},_templateWorkflowLink:function(e){return['<div class="toolTitle">','<a class="'+e.cls+' " href="',Galaxy.root,e.href,'">',e.title,"</a>","</div>"].join("")},_template:function(){return['<div class="toolMenuContainer">','<div class="toolMenu" style="display: none">','<div id="search-no-results" style="display: none; padding-top: 5px">',"<em><strong>",(0,c.default)("Search did not match any tools."),"</strong></em>","</div>","</div>",'<div class="toolSectionPad"/>','<div class="toolSectionPad"/>','<div class="toolSectionTitle" id="title_XXinternalXXworkflow">',"<span>",(0,c.default)("Workflows"),"</span>","</div>",'<div id="internal-workflows" class="toolSectionBody">','<div class="toolSectionBg"/>',"</div>","</div>"].join("")},toString:function(){return"toolPanel"}}));t.default=h}).call(t,i(2),i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(3),a=n(s),o=i(4),l=n(o),r=i(8),d=n(r),c=i(43),u=n(c),h=i(242),f=n(h),p=i(243),m=n(p),g=i(246),_=n(g),v=i(248),y=n(v);t.default=e.View.extend({options:{nginx_upload_path:"",ftp_upload_site:"n/a",default_genome:"?",default_extension:"auto",height:500,width:900,auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be.  You can also upload compressed files, which will automatically be decompressed."}},list_extensions:[],list_genomes:[],initialize:function(e){var t=this;this.options=l.default.merge(e,this.options),this.ui_button=new f.default.View({onclick:function(e){e.preventDefault(),t.show()},onunload:function(){var e=t.ui_button.model.get("percentage",0);if(e>0&&e<100)return"Several uploads are queued."}}),this.setElement(this.ui_button.$el);var t=this;l.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(e){for(var i in e)t.list_extensions.push({id:e[i].extension,text:e[i].extension,description:e[i].description,description_url:e[i].description_url,composite_files:e[i].composite_files});t.list_extensions.sort(function(e,t){var i=e.text&&e.text.toLowerCase(),n=t.text&&t.text.toLowerCase();return i>n?1:i<n?-1:0}),t.options.datatypes_disable_auto||t.list_extensions.unshift(t.options.auto)}}),l.default.get({url:Galaxy.root+"api/genomes",success:function(e){for(var i in e)t.list_genomes.push({id:e[i][1],text:e[i][0]});t.list_genomes.sort(function(e,i){return e.id==t.options.default_genome?-1:i.id==t.options.default_genome?1:e.text>i.text?1:e.text<i.text?-1:0})}})},show:function(){var e=this;if(!Galaxy.currHistoryPanel||!Galaxy.currHistoryPanel.model)return void window.setTimeout(function(){e.show()},500);this.current_user=Galaxy.user.id,this.modal||(this.tabs=new u.default.View,this.default_view=new m.default(this),this.tabs.add({id:"regular",title:(0,a.default)("Regular"),$el:this.default_view.$el}),this.composite_view=new _.default(this),this.tabs.add({id:"composite",title:(0,a.default)("Composite"),$el:this.composite_view.$el}),this.collection_view=new y.default(this),this.tabs.add({id:"collection",title:(0,a.default)("Collection"),$el:this.collection_view.$el}),this.modal=new d.default.View({title:(0,a.default)("Download from web or upload from disk"),body:this.tabs.$el,height:this.options.height,width:this.options.width,closing_events:!0,title_separator:!1})),this.modal.show()},currentHistory:function(){return this.current_user&&Galaxy.currHistoryPanel.model.get("id")},currentFtp:function(){return this.current_user&&this.options.ftp_upload_site},toData:function(e,t){var i={payload:{tool_id:"upload1",history_id:t||this.currentHistory(),inputs:{}},files:[],error_message:null};if(e&&e.length>0){var n={file_count:e.length,dbkey:e[0].get("genome","?"),file_type:e[0].get("extension","auto")};for(var s in e){var a=e[s];if(a.set("status","running"),!(a.get("file_size")>0)){i.error_message="Upload content incomplete.",a.set("status","error"),a.set("info",i.error_message);break}var o="files_"+s+"|";switch(n[o+"type"]="upload_dataset",n[o+"space_to_tab"]=a.get("space_to_tab")&&"Yes"||null,n[o+"to_posix_lines"]=a.get("to_posix_lines")&&"Yes"||null,n[o+"dbkey"]=a.get("genome",null),n[o+"file_type"]=a.get("extension",null),a.get("file_mode")){case"new":n[o+"url_paste"]=a.get("url_paste");break;case"ftp":n[o+"ftp_files"]=a.get("file_path");break;case"local":i.files.push({name:o+"file_data",file:a.get("file_data")})}}i.payload.inputs=JSON.stringify(n)}return i}})}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n){Object.defineProperty(t,"__esModule",{value:!0});var s=i(3),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=e.View.extend({initialize:function(t){var i=this;this.model=t&&t.model||new e.Model({icon:"fa-upload",tooltip:(0,a.default)("Download from URL or upload files from disk"),label:"Load Data",percentage:0,status:"",onunload:function(){},onclick:function(){}}).set(t),this.setElement(this._template()),this.$progress=this.$(".progress-bar"),this.listenTo(this.model,"change",this.render,this),this.render(),n(window).on("beforeunload",function(){return i.model.get("onunload")()})},render:function(){var e=this.model.attributes;this.$el.off("click").on("click",function(t){e.onclick(t)}).tooltip({title:this.model.get("tooltip"),placement:"bottom"}),this.$progress.removeClass().addClass("progress-bar").addClass("progress-bar-notransition").addClass(""!=e.status&&"progress-bar-"+e.status).css({width:e.percentage+"%"})},_template:function(){return'<div class="upload-button"><div class="progress"><div class="progress-bar"/><a class="panel-header-button" href="javascript:void(0)" id="tool-panel-upload-button"><span class="fa fa-upload"/></a></div></div>'}});t.default={View:o}}).call(t,i(2),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=(a(r),i(29)),c=a(d),u=i(244),h=a(u),f=i(55),p=a(f),m=i(56),g=a(m),_=i(15),v=a(_),y=i(10),w=a(y),b=i(6),x=a(b),C=i(245),$=a(C);i(57),t.default=e.View.extend({upload_size:0,collection:new c.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ui_button=e.ui_button,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.$uploadbox=this.$(".upload-box"),this.$uploadtable=this.$(".upload-table"),this.btnLocal=new x.default.Button({id:"btn-local",title:(0,l.default)("Choose local file"),onclick:function(){t.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new x.default.Button({id:"btn-ftp",title:(0,l.default)("Choose FTP file"),onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,l.default)("Pause"),onclick:function(){t._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,l.default)("Reset"),onclick:function(){t._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$uploadbox.uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$uploadbox.addClass("highlight")},ondragleave:function(){t.$uploadbox.removeClass("highlight")}}),this.ftp=new v.default.View({title:(0,l.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new w.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t._changeExtension(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new g.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new w.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t._changeGenome(e)}}),this.loader=new $.default({$container:this.$uploadbox,collection:this.collection,new_content:function(e){var i=new h.default(t,{model:e});return t.$uploadtable.find("> tbody:first").append(i.$el),i.render(),i}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this.render()},render:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running,s=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[n?"enable":"disable"](),this.btnFtp[n?"enable":"disable"](),this.btnCreate[n?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[s?"show":"hide"](),this.$(".upload-helper")[s?"hide":"show"]()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new c.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t});this.render(),this.collection.add(i)},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"success"}),this.ui_button.model.set("percentage",this._uploadPercentage(100,i.get("file_size"))),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.success++,this.render(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this.render()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this.render()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this.render()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(0!=this.counter.announce&&0==this.counter.running){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this._uploadFtp(),this.uploadbox.start(),this.render()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){if(0==this.counter.running){this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this.render()}},_changeExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},_changeGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_uploadFtp:function(){var e=this,t=[];this.collection.each(function(i){"queued"==i.get("status")&&"ftp"==i.get("file_mode")&&(e.uploadbox.remove(i.id),t.push(i))}),t.length>0&&s.uploadpost({data:this.app.toData(t),url:this.app.options.nginx_upload_path,success:function(i){n.each(t,function(t){e._eventSuccess(t.id)})},error:function(i){n.each(t,function(t){e._eventError(t.id,i)})}})},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Type</th><th>Genome</th><th>Settings</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Type (set all):</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=a(r),c=i(29),u=(a(c),i(54)),h=a(u),f=i(15),p=a(f),m=i(10),g=a(m);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$settings=this.$(".upload-settings"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new p.default.View({title:(0,l.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});var s=this.app.select_genome.value(),a=this.app.select_extension.value();this.select_genome=new g.default.View({css:"upload-genome",data:i.app.list_genomes,container:this.$(".upload-genome"),value:s,onchange:function(e){i.model.set("genome",e)}}),this.select_extension=new g.default.View({css:"upload-extension",data:i.app.list_extensions,container:this.$(".upload-extension"),value:a,onchange:function(e){i.model.set("extension",e)}}),this.model.set({genome:s,extension:a}),this.$symbol.on("click",function(){i._removeRow()}),this.$(".upload-extension-info").on("click",function(e){i.app.showExtensionInfo({$el:n(e.target),title:i.select_extension.text(),extension:i.select_extension.value()})}).on("mousedown",function(e){e.preventDefault()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:genome",function(){i._refreshGenome()}),this.listenTo(this.model,"change:extension",function(){i._refreshExtension()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()})},render:function(){this._refreshType(),this._refreshPercentage(),this._refreshStatus(),this._refreshInfo(),this._refreshGenome(),this._refreshExtension(),this._refreshFileSize()},remove:function(){this.select_genome.remove(),this.select_extension.remove(),e.View.prototype.remove.apply(this)},_refreshType:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(d.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshExtension:function(){this.select_extension.value(this.model.get("extension"))},_refreshGenome:function(){this.select_genome.value(this.model.get("genome"))},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),t?(this.select_genome.enable(),this.select_extension.enable()):(this.select_genome.disable(),this.select_extension.disable()),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(d.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-extension" style="float: left;"/>&nbsp;&nbsp<div class="upload-extension-info upload-icon-button fa fa-search"/></td><td><div class="upload-genome"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,i,n){Object.defineProperty(t,"__esModule",{value:!0}),t.default=e.View.extend({initialize:function(e){this.$container=e.$container,this.collection=e.collection,this.new_content=e.new_content,this.max=e.max||50,this.content_list={},this.$message=i("<div/>").addClass("ui-limitloader").append("...only the first "+this.max+" entries are visible."),this.$container.append(this.$message),this.listenTo(this.collection,"reset",this._reset,this),this.listenTo(this.collection,"add",this._refresh,this),this.listenTo(this.collection,"remove",this._remove,this)},_done:function(){var e=n.size(this.content_list)>this.max;return this.$message[e?"show":"hide"](),e},_reset:function(){n.each(this.content_list,function(e){e.remove()}),this.content_list={},this.$message.hide()},_remove:function(e){var t=e.id,i=this.content_list[t];i&&(i.remove(),delete this.content_list[t]),this._refresh()},_refresh:function(){if(!this._done())for(var e in this.collection.models){var t=this.collection.models[e];this.content_list[t.id];if(!this.content_list[t.id]){var i=this.new_content(t);if(this.content_list[t.id]=i,this._done())break}}}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=(a(r),i(29)),c=a(d),u=i(247),h=a(u),f=i(56),p=a(f),m=i(15),g=(a(m),i(10)),_=a(g),v=i(6),y=a(v);t.default=e.View.extend({collection:new c.default.Collection,initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnStart=new y.default.Button({title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnClose=new y.default.Button({title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.select_extension=new _.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return e.composite_files}),onchange:function(e){t.collection.reset();var i=n.findWhere(t.list_extensions,{id:e});i&&i.composite_files&&n.each(i.composite_files,function(e){t.collection.add({id:t.collection.size(),file_desc:e.description||e.name})})}}),this.$(".upload-footer-extension-info").on("click",function(e){new p.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new _.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome}),this.listenTo(this.collection,"add",function(e){t._eventAnnounce(e)}),this.listenTo(this.collection,"change add",function(){t.render()}),this.select_extension.options.onchange(this.select_extension.value()),this.render()},render:function(){var e=this.collection.first();e&&"running"==e.get("status")?(this.select_genome.disable(),this.select_extension.disable()):(this.select_genome.enable(),this.select_extension.enable()),this.collection.where({status:"ready"}).length==this.collection.length&&this.collection.length>0?(this.btnStart.enable(),this.btnStart.$el.addClass("btn-primary")):(this.btnStart.disable(),this.btnStart.$el.removeClass("btn-primary")),this.$(".upload-table")[this.collection.length>0?"show":"hide"]()},_eventAnnounce:function(e){var t=new h.default(this,{model:e});this.$(".upload-table > tbody:first").append(t.$el),this.$(".upload-table")[this.collection.length>0?"show":"hide"](),t.render()},_eventStart:function(){var e=this;this.collection.each(function(t){t.set({genome:e.select_genome.value(),extension:e.select_extension.value()})}),s.uploadpost({url:this.app.options.nginx_upload_path,data:this.app.toData(this.collection.filter()),success:function(t){e._eventSuccess(t)},error:function(t){e._eventError(t)},progress:function(t){e._eventProgress(t)}})},_eventProgress:function(e){this.collection.each(function(t){t.set("percentage",e)})},_eventSuccess:function(e){this.collection.each(function(e){e.set("status","success")}),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e){this.collection.each(function(t){t.set({status:"error",info:e})})},_template:function(){return'<div class="upload-view-composite"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th/><th/><th>Description</th><th>Name</th><th>Size</th><th>Settings</th><th>Status</th></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Composite Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome/Build:</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=a(r),c=i(54),u=a(c),h=i(55),f=a(h),p=i(15),m=a(p),g=i(6),_=a(g),v=i(10);a(v);i(57),t.default=e.View.extend({status_classes:{init:"upload-mode fa fa-exclamation text-primary",ready:"upload-mode fa fa-check text-success",running:"upload-mode fa fa-spinner fa-spin",success:"upload-mode fa fa-check",error:"upload-mode fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template()),this.$source=this.$(".upload-source"),this.$settings=this.$(".upload-settings"),this.$status=this.$(".upload-status"),this.$text=this.$(".upload-text"),this.$text_content=this.$(".upload-text-content"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$file_name=this.$(".upload-file-name"),this.$file_desc=this.$(".upload-file-desc"),this.$file_size=this.$(".upload-file-size"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.uploadinput=this.$el.uploadinput({ondragover:function(){i.model.get("enabled")&&i.$el.addClass("warning")},ondragleave:function(){i.$el.removeClass("warning")},onchange:function(e){"running"!=i.model.get("status")&&e&&e.length>0&&(i.model.reset({file_data:e[0],file_name:e[0].name,file_size:e[0].size,file_mode:e[0].mode||"local"}),i._refreshReady())}}),this.button_menu=new _.default.ButtonMenu({icon:"fa-caret-down",title:(0,l.default)("Select"),pull:"left"}),this.$source.append(this.button_menu.$el),this.button_menu.addMenu({icon:"fa-laptop",title:(0,l.default)("Choose local file"),onclick:function(){i.uploadinput.dialog()}}),this.app.ftp_upload_site&&this.button_menu.addMenu({icon:"fa-folder-open-o",title:(0,l.default)("Choose FTP file"),onclick:function(){i._showFtp()}}),this.button_menu.addMenu({icon:"fa-edit",title:"Paste/Fetch data",onclick:function(){i.model.reset({file_mode:"new",file_name:"New File"})}}),this.ftp=new m.default.View({title:"Choose FTP file:",container:this.$source.find(".ui-button-menu"),placement:"right"}),this.settings=new m.default.View({title:(0,l.default)("Upload configuration"),container:this.$settings,placement:"bottom"}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length}),i._refreshReady()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_name",function(){i._refreshFileName()}),this.listenTo(this.model,"change:file_mode",function(){i._refreshMode()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){this.$el.attr("id","upload-row-"+this.model.id),this.$file_name.html(s.escape(this.model.get("file_name")||"-")),this.$file_desc.html(this.model.get("file_desc")||"Unavailable"),this.$file_size.html(d.default.bytesToString(this.model.get("file_size"))),this.$status.removeClass().addClass(this.status_classes.init)},remove:function(){e.View.prototype.remove.apply(this)},_refreshReady:function(){this.app.collection.each(function(e){e.set("status",e.get("file_size")>0&&"ready"||"init")})},_refreshMode:function(){"new"==this.model.get("file_mode")?(this.height=this.$el.height(),this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$text_content.val("").trigger("keyup")):(this.$el.height(this.height),this.$text.hide())},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));0!=e?this.$progress_bar.css({width:e+"%"}):(this.$progress_bar.addClass("no-transition"),this.$progress_bar.css({width:"0%"}),this.$progress_bar[0].offsetHeight,this.$progress_bar.removeClass("no-transition")),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$status.removeClass().addClass(this.status_classes[e]),this.model.set("enabled","running"!=e),this.$text_content.attr("disabled",!this.model.get("enabled")),this.$el.removeClass("success danger warning"),"running"!=e&&"ready"!=e||this.model.set("percentage",0),this.$source.find(".button")["running"==e?"addClass":"removeClass"]("disabled"),"success"==e&&(this.$el.addClass("success"),this.model.set("percentage",100),this.$percentage.html("100%")),"error"==e?(this.$el.addClass("danger"),this.model.set("percentage",0),this.$info_progress.hide(),this.$info_text.show()):(this.$info_progress.show(),this.$info_text.hide())},_refreshFileName:function(){this.$file_name.html(this.model.get("file_name")||"-")},_refreshFileSize:function(){this.$file_size.html(d.default.bytesToString(this.model.get("file_size")))},_showFtp:function(){if(this.ftp.visible)this.ftp.hide();else{var e=this;this.ftp.empty(),this.ftp.append(new f.default({ftp_upload_site:this.app.ftp_upload_site,onchange:function(t){e.ftp.hide(),"running"!=e.model.get("status")&&t&&(e.model.reset({file_mode:"ftp",file_name:t.path,file_size:t.size,file_path:t.path}),e._refreshReady())}}).$el),this.ftp.show()}},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new u.default(this).$el),this.settings.show())},_template:function(){return'<tr class="upload-row"><td><div class="upload-source"/><div class="upload-text-column"><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-status"/></td><td><div class="upload-file-desc upload-title"/></td><td><div class="upload-file-name upload-title"/></td><td><div class="upload-file-size upload-size"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=(a(r),i(29)),c=a(d),u=i(249),h=a(u),f=i(55),p=a(f),m=i(56),g=a(m),_=i(15),v=a(_),y=i(10),w=a(y),b=i(6),x=a(b),C=i(58);a(C);i(57),t.default=e.View.extend({upload_size:0,collection:new c.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ui_button=e.ui_button,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnLocal=new x.default.Button({id:"btn-local",title:(0,l.default)("Choose local files"),onclick:function(){t.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new x.default.Button({id:"btn-ftp",title:(0,l.default)("Choose FTP files"),onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnBuild=new x.default.Button({id:"btn-build",title:(0,l.default)("Build"),onclick:function(){t._eventBuild()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,l.default)("Pause"),onclick:function(){t._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,l.default)("Reset"),onclick:function(){t._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnBuild,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$(".upload-box").uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$(".upload-box").addClass("highlight")},ondragleave:function(){t.$(".upload-box").removeClass("highlight")}}),this.ftp=new v.default.View({title:(0,l.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new w.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t.updateExtension(e)}}),this.collectionType="list",this.select_collection=new w.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-collection-type"),data:[{id:"list",text:"List"},{id:"paired",text:"Paired"},{id:"list:paired",text:"List of Pairs"}],value:"list",onchange:function(e){t.updateCollectionType(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new g.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new w.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t.updateGenome(e)}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this._updateScreen()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new c.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t,extension:this.select_extension.value(),genome:this.select_genome.value()});this.collection.add(i);var n=new h.default(this,{model:i});this.$(".upload-table > tbody:first").append(n.$el),this._updateScreen(),n.render()},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=n.pluck(t.outputs,"hid"),s=this.collection.get(e);s.set({percentage:100,status:"success",hids:i}),this.ui_button.model.set("percentage",this._uploadPercentage(100,s.get("file_size"))),this.upload_completed+=100*s.get("file_size"),this.counter.announce--,this.counter.success++,this._updateScreen(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this._updateScreen()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this._updateScreen()},_eventBuild:function(){var e=[];n.forEach(this.collection.models,function(t){e.push.apply(e,t.get("hids"))});var t=n.map(e,function(e){return Galaxy.currHistoryPanel.collection.getByHid(e)}),i=new Galaxy.currHistoryPanel.collection.constructor(t);i.historyId=Galaxy.currHistoryPanel.collection.historyId,Galaxy.currHistoryPanel.buildCollection(this.collectionType,i,!0),this.counter.running=0,this._updateScreen(),this._eventReset(),this.app.modal.hide()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this._updateScreen()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(!(0==this.counter.announce||this.counter.running>0)){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this.uploadbox.start(),this._updateScreen()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){0==this.counter.running&&(this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this._updateScreen())},updateExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},updateCollectionType:function(e){this.collectionType=e},updateGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_updateScreen:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running&&0==this.counter.announce&&this.counter.success>0&&0==this.counter.error,s=0==this.counter.running,a=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnBuild[n?"enable":"disable"](),this.btnBuild.$el[n?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[s?"enable":"disable"](),this.btnFtp[s?"enable":"disable"](),this.btnCreate[s?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[a?"show":"hide"](),this.$(".upload-helper")[a?"hide":"show"]()},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title-compressed">Collection Type:</span><span class="upload-footer-collection-type"/><span class="upload-footer-title-compressed">File Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title-compressed">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=a(r),c=i(29),u=(a(c),i(54)),h=a(u),f=i(15),p=a(f),m=i(10);a(m);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title-extended"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new p.default.View({title:(0,l.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});this.app.select_genome.value(),this.app.select_extension.value();this.$symbol.on("click",function(){i._removeRow()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(d.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(d.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title-extended"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(6),a=n(s),o=i(251),l=n(o),r=i(252),d=n(r),c=i(3),u=n(c),h=e.View.extend({initialize:function(t,i){var n=this;this.userIsAnonymous=Galaxy.user.isAnonymous(),this.allow_user_dataset_purge=i.config.allow_user_dataset_purge,this.root=i.root,this.historyView=new d.default.CurrentHistoryView({className:d.default.CurrentHistoryView.prototype.className+" middle",purgeAllowed:this.allow_user_dataset_purge,linkTarget:"galaxy_main"}),Galaxy.currHistoryPanel=this.historyView,Galaxy.currHistoryPanel.listenToGalaxy(Galaxy),this.buttonRefresh=new a.default.ButtonLink({id:"history-refresh-button",title:(0,u.default)("Refresh history"),cls:"panel-header-button",icon:"fa fa-refresh",onclick:function(){n.historyView.loadCurrentHistory()}}),this.buttonOptions=new a.default.ButtonLink({id:"history-options-button",title:(0,u.default)("History options"),cls:"panel-header-button",target:"galaxy_main",icon:"fa fa-cog",href:this.root+"root/history_options"}),this.buttonViewMulti=new a.default.ButtonLink({id:"history-view-multi-button",title:(0,u.default)("View all histories"),cls:"panel-header-button",icon:"fa fa-columns",href:this.root+"history/view_multiple"}),this.model=new e.Model({cls:"history-right-panel",title:(0,u.default)("History"),buttons:[this.buttonRefresh,this.buttonOptions,this.buttonViewMulti]}),this.setElement(this._template()),this.historyView.setElement(this.$el),this.historyView.connectToQuotaMeter(Galaxy.quotaMeter),this.historyView.loadCurrentHistory(),Galaxy.listenTo(this.historyView,"history-size-change",function(){Galaxy.user.fetch({url:Galaxy.user.urlRoot()+"/"+(Galaxy.user.id||"current")})})},render:function(){this.optionsMenu=(0,l.default)(this.buttonOptions.$el,{anonymous:this.userIsAnonymous,purgeAllowed:this.allow_user_dataset_purge,root:this.root}),this.buttonViewMulti.$el[this.userIsAnonymous?"hide":"show"]()},_template:function(e){return['<div id="current-history-panel" class="history-panel middle"/>'].join("")},toString:function(){return"historyPanel"}});t.default=h}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}function a(e,t,i){return n.clone(m).filter(function(n){return!(e&&!n.anon)&&(!(!t&&n.purge)&&(n.href&&(n.href=i+n.href,n.target=n.target||"galaxy_main"),n.confirm&&(n.func=function(){confirm(n.confirm)&&(galaxy_main.location=n.href)}),!0))})}Object.defineProperty(t,"__esModule",{value:!0});var o=i(42),l=s(o),r=i(112),d=s(r),c=i(5),u=(s(c),i(3)),h=s(u),f=i(34),p=s(f),m=[{html:(0,h.default)("History Lists"),header:!0},{html:(0,h.default)("Saved Histories"),href:"histories/list",target:"_top"},{html:(0,h.default)("Histories Shared with Me"),href:"histories/list_shared",target:"_top"},{html:(0,h.default)("Current History"),header:!0,anon:!0},{html:(0,h.default)("Create New"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.createNewHistory()}},{html:(0,h.default)("Copy History"),func:function(){(0,d.default)(Galaxy.currHistoryPanel.model).done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Share or Publish"),href:"history/sharing"},{html:(0,h.default)("Show Structure"),href:"history/display_structured",anon:!0},{html:(0,h.default)("Extract Workflow"),href:"workflow/build_from_current_history"},{html:(0,h.default)("Delete"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history?"))&&Galaxy.currHistoryPanel.model._delete().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Permanently"),purge:!0,anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history permanently? This cannot be undone."))&&Galaxy.currHistoryPanel.model.purge().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Dataset Actions"),header:!0,anon:!0},{html:(0,h.default)("Copy Datasets"),href:"dataset/copy_datasets"},{html:(0,h.default)("Dataset Security"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/permissions?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Resume Paused Jobs"),href:"history/resume_paused_jobs?current=True",anon:!0},{html:(0,h.default)("Collapse Expanded Datasets"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.collapseAll()}},{html:(0,h.default)("Unhide Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really unhide all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"unhide"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"delete"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Purge Deleted Datasets"),confirm:(0,h.default)("Really delete all deleted datasets permanently? This cannot be undone."),href:"history/purge_deleted_datasets",purge:!0,anon:!0},{html:(0,h.default)("Downloads"),header:!0},{html:(0,h.default)("Export Tool Citations"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/citations?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Export History to File"),href:"history/export_archive?preview=True",anon:!0},{html:(0,h.default)("Other Actions"),header:!0},{html:(0,h.default)("Import from File"),href:"histories/import",target:"_top"}];p.default.add({url:"api/webhooks/history-menu/all",async:!1,callback:function(t){var i=[];e.each(t.models,function(e,t){var n=t.toJSON();n.activate&&i.push({html:(0,h.default)(n.config.title),anon:!0})}),i.length>0&&(i.unshift({html:(0,h.default)("Webhooks"),header:!0}),e.merge(m,i))}});var g=function(e,t){t=t||{};var i=void 0===t.anonymous||t.anonymous,n=t.purgeAllowed||!1,s=a(i,n,Galaxy.root);return new l.default(e,s)};t.default=g}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(62),l=(a(o),i(254)),r=a(l),d=i(5),c=a(d),u=i(3),h=a(u),f=c.default.SessionStorageModel.extend({defaults:{tagsEditorShown:!1,annotationEditorShown:!1,scrollPosition:0},toString:function(){return"HistoryViewPrefs("+JSON.stringify(this.toJSON())+")"}});f.storageKey=function(){return"history-panel"};var p=r.default.HistoryViewEdit,m=p.extend({className:p.prototype.className+" current-history-panel",HDCAViewClass:p.prototype.HDCAViewClass.extend({foldoutStyle:"drilldown"}),emptyMsg:[(0,h.default)("This history is empty"),". ",(0,h.default)("You can "),'<a class="uploader-link" href="javascript:void(0)">',(0,h.default)("load your own data"),"</a>",(0,h.default)(" or "),'<a class="get-data-link" href="javascript:void(0)">',(0,h.default)("get data from an external source"),"</a>"].join(""),initialize:function(t){t=t||{},this.preferences=new f(e.extend({id:f.storageKey()},e.pick(t,e.keys(f.prototype.defaults)))),p.prototype.initialize.call(this,t),this.panelStack=[],this.currentContentId=t.currentContentId||null},_setUpListeners:function(){p.prototype._setUpListeners.call(this);var e=this;this.on("new-model",function(){e.preferences.set("scrollPosition",0)})},loadCurrentHistory:function(){return this.loadHistory(null,{url:Galaxy.root+"history/current_history_json"})},switchToHistory:function(e,t){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to switch histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(e,{url:Galaxy.root+"history/set_as_current?id="+e})},createNewHistory:function(e){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to create histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(null,{url:Galaxy.root+"history/create_new_current"})},setModel:function(e,t,i){return p.prototype.setModel.call(this,e,t,i),this.model&&this.model.id&&(this.log("checking for updates"),this.model.checkForUpdates()),this},_setUpModelListeners:function(){return p.prototype._setUpModelListeners.call(this),this.listenTo(this.model,{"change:nice_size change:size":function(){this.trigger("history-size-change",this,this.model,arguments)},"change:id":function(){this.once("loading-done",function(){this.model.checkForUpdates()})}})},_setUpCollectionListeners:function(){p.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,"state:ready",function(e,t,i){e.get("visible")||this.collection.storage.includeHidden()||this.removeItemView(e)})},_setUpBehaviors:function(t){t=t||this.$el;var i=this;return p.prototype._setUpBehaviors.call(i,t),this._debouncedScrollCaptureHandler||(this._debouncedScrollCaptureHandler=e.debounce(function(){i.$el.is(":visible")&&i.preferences.set("scrollPosition",n(this).scrollTop())},40)),i.$scrollContainer(t).off("scroll",this._debouncedScrollCaptureHandler).on("scroll",this._debouncedScrollCaptureHandler),i},_buildNewRender:function(){if(!this.model)return n();var e=p.prototype._buildNewRender.call(this);return e.find(".search").prependTo(e.find("> .controls")),this._renderQuotaMessage(e),e},_renderQuotaMessage:function(e){return e=e||this.$el,n(this.templates.quotaMsg({},this)).prependTo(e.find(".messages"))},_renderTags:function(e){var t=this;p.prototype._renderTags.call(t,e),t.preferences.get("tagsEditorShown")&&t.tagsEditor.toggle(!0),t.listenTo(t.tagsEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("tagsEditorShown",e.hidden)})},_renderAnnotation:function(e){var t=this;p.prototype._renderAnnotation.call(t,e),t.preferences.get("annotationEditorShown")&&t.annotationEditor.toggle(!0),t.listenTo(t.annotationEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("annotationEditorShown",e.hidden)})},_swapNewRender:function(t){p.prototype._swapNewRender.call(this,t);var i=this;return e.delay(function(){var e=i.preferences.get("scrollPosition");e&&i.scrollTo(e,0)},10),this},_attachItems:function(e){p.prototype._attachItems.call(this,e);var t=this;return t.currentContentId&&t._setCurrentContentById(t.currentContentId),this},addItemView:function(e,t,i){var n=p.prototype.addItemView.call(this,e,t,i);return n&&this.panelStack.length?this._collapseDrilldownPanel():n},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}})},setCurrentContent:function(e){this.$(".history-content.current-content").removeClass("current-content"),e?(e.$el.addClass("current-content"),this.currentContentId=e.model.id):this.currentContentId=null},_setCurrentContentById:function(e){var t=this.viewFromModelId(e)||null;this.setCurrentContent(t)},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$controls().add(this.$list()).hide(),e.parentName=this.model.get("name"),e.delegateEvents().render().$el.appendTo(this.$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.$controls().add(this.$list()).show()},events:e.extend(e.clone(p.prototype.events),{"click .uploader-link":function(e){Galaxy.upload.show(e)},"click .get-data-link":function(e){var t=n(".toolMenuContainer");t.parent().scrollTop(0),t.find('span:contains("Get Data")').click()}}),listenToGalaxy:function(t){this.listenTo(t,{"center-frame:load":function(t){var i=t.fullpath,n=null,s={display:/datasets\/([a-f0-9]+)\/display/,edit:/datasets\/([a-f0-9]+)\/edit/,report_error:/dataset\/errors\?id=([a-f0-9]+)/,rerun:/tool_runner\/rerun\?id=([a-f0-9]+)/,show_params:/datasets\/([a-f0-9]+)\/show_params/};e.find(s,function(t,s){return n=e.result(i.match(t),1)}),this._setCurrentContentById(n?"dataset-"+n:null)},"center-panel:load":function(e){this._setCurrentContentById()}})},connectToQuotaMeter:function(e){return e?(this.listenTo(e,"quota:over",this.showQuotaMessage),this.listenTo(e,"quota:under",this.hideQuotaMessage),this.on("rendered rendered:initial",function(){e&&e.isOverQuota()&&this.showQuotaMessage()}),this):this},clearMessages:function(t){var i=e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget);return i=i.not(".quota-message"),i.fadeOut(this.fxSpeed,function(){n(this).remove()}),this},showQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")&&e.slideDown(this.fxSpeed)},hideQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")||e.slideUp(this.fxSpeed)},unhideHidden:function(){var e=this;return confirm((0,h.default)("Really unhide all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{visible:!0}).done(function(){e.model.contents.includeHidden||e.renderItems()}):s.when()},deleteHidden:function(){var e=this;return confirm((0,h.default)("Really delete all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{deleted:!0,visible:!0}):s.when()},toString:function(){return"CurrentHistoryView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=c.default.wrapTemplate(['<div class="quota-message errormessage">',(0,h.default)("You are over your disk quota"),". ",(0,h.default)("Tool execution is on hold until your disk usage drops below your allocated quota"),".","</div>"],"history");return e.extend(e.clone(p.prototype.templates),{quotaMsg:t})}(),t.default={CurrentHistoryView:m}}).call(t,i(1),i(0),i(0))},function(e,t,i){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=i(2),s=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(t[i]=e[i]);return t.default=e,t}(n),a=i(116),o=function(e){return e&&e.__esModule?e:{default:e}}(a),l=["new","queued","running"],r=["error","deleted"],d=s.Model.extend({url:function(){return Galaxy.root+"api/histories/"+this.attributes.history_id+"/contents/dataset_collections/"+this.attributes.collection_id+"/jobs_summary"},hasDetails:function(){return this.has("populated_state")},new:function(){return!this.hasDetails()||"new"==this.get("populated_state")},errored:function(){return"error"===this.get("populated_state")||this.anyWithStates(r)},states:function(){return this.get("states")||{}},anyWithState:function(e){return(this.states()[e]||0)>0},anyWithStates:function(e){var t=this.states();for(var i in e)if((t[e[i]]||0)>0)return!0;return!1},numWithStates:function(e){var t=this.states(),i=0;for(var n in e)i+=t[e[n]]||0;return i},numInError:function(){return this.numWithStates(r)},running:function(){return this.anyWithState("running")},terminal:function(){return!this.new()&&!this.anyWithStates(l)},jobCount:function(){var e=this.states(),t=0;for(var i in e)t+=e[i];return t},toString:function(){return"JobStatesSummary(id="+this.get("id")+")"}}),c=s.Collection.extend({model:d,initialize:function(){this.updateTimeoutId=null,this.active=!0},url:function(){var e=this.models.filter(function(e){return!e.terminal()}),t=e.map(function(e){return e.get("id")}).join(","),i=e.map(function(e){return e.get("model")}).join(",");return Galaxy.root+"api/histories/"+this.historyId+"/jobs_summary?ids="+t+"&types="+i},monitor:function(){var e=this;if(this.clearUpdateTimeout(),this.active){var t=function(){e.updateTimeoutId=setTimeout(function(){e.monitor()},2e3)},i=this.models.filter(function(e){return!e.terminal()});if(i.length,!1){var n=i.map(function(e){return function(){return e.fetch()}});return new o.default.AjaxQueue(n).done(t)}i.length>0?this.fetch({remove:!1}).done(t):t()}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},toString:function(){return"JobStatesSummaryCollection()"}});t.default={JobStatesSummary:d,JobStatesSummaryCollection:c,FETCH_STATE_ON_ADD:!1}},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(255),l=a(o),r=i(63),d=(a(r),i(16)),c=(a(d),i(115)),u=a(c),h=i(257),f=a(h),p=i(258),m=a(p),g=i(39),_=a(g),v=i(124),y=a(v),w=i(58),b=a(w),x=i(261),C=a(x),$=i(262),k=a($),S=i(21),T=a(S),P=i(42),E=(a(P),i(5)),D=a(E),A=i(3),M=a(A);i(20);var I=l.default.HistoryView,L=I.extend({HDAViewClass:f.default.HDAListItemEdit,HDCAViewClass:m.default.HDCAListItemEdit,initialize:function(e){e=e||{},I.prototype.initialize.call(this,e),this.tagsEditor=null,this.dragItems=!0,this.annotationEditor=null,this.purgeAllowed=e.purgeAllowed||!1,this.annotationEditorShown=e.annotationEditorShown||!1,this.tagsEditorShown=e.tagsEditorShown||!1},_setUpListeners:function(){return I.prototype._setUpListeners.call(this),this.on({"droptarget:drop":function(e,t){this.dataDropped(t),this.dropTargetOff()},"view:attached view:removed":function(){this._renderCounts()},"search:loading-progress":this._renderSearchProgress,"search:searching":this._renderSearchFindings})},_setUpModelListeners:function(){return I.prototype._setUpModelListeners.call(this),this.listenTo(this.model,"change:size",this.updateHistoryDiskSize),this},_setUpCollectionListeners:function(){return I.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"change:deleted":this._handleItemDeletedChange,"change:visible":this._handleItemVisibleChange,"change:purged":function(e){this.model.fetch()},"fetching-deleted":function(e){this.$("> .controls .deleted-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-hidden":function(e){this.$("> .controls .hidden-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-deleted-done fetching-hidden-done":this._renderCounts}),this},_buildNewRender:function(){var e=I.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.user&&Galaxy.user.id&&Galaxy.user.id===this.model.get("user_id")&&(this._renderTags(e),this._renderAnnotation(e)),e):e},updateHistoryDiskSize:function(){this.$(".history-size").text(this.model.get("nice_size"))},renderItems:function(e){var t=I.prototype.renderItems.call(this,e);return this.searchFor?this._renderSearchFindings(e):this._renderCounts(e),t},_renderCounts:function(t){t=t instanceof e?t:this.$el;var i=this.templates.counts(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i)},_renderTags:function(e){var t=this;this.tagsEditor=new _.default.TagsEditor({model:this.model,el:e.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDATagEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDATagEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".controls .actions"))})},_renderAnnotation:function(e){var t=this;this.annotationEditor=new y.default.AnnotationEditor({model:this.model,el:e.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDAAnnotationEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDAAnnotationEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".controls .actions"))})},_setUpBehaviors:function(e){if(e=e||this.$el,I.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.model.get("user_id")){var t=this;e.find("> .controls .name").attr("title",(0,M.default)("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var i=t.model.get("name");e&&e!==i?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(i)}})}},multiselectActions:function(){var e=this,t=[{html:(0,M.default)("Hide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.hide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Unhide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.unhide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Delete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.delete;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Undelete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.undelete;e.getSelectedModels().ajaxQueue(t)}}];return e.purgeAllowed&&t.push({html:(0,M.default)("Permanently delete datasets"),func:function(){if(confirm((0,M.default)("This will permanently remove the data in your datasets. Are you sure?"))){var t=u.default.HistoryDatasetAssociation.prototype.purge;e.getSelectedModels().ajaxQueue(t)}}}),t=t.concat(e._collectionActions())},_collectionActions:function(){var e=this;return[{html:(0,M.default)("Build Dataset List"),func:function(){e.buildCollection("list")}},{html:(0,M.default)("Build Dataset Pair"),func:function(){e.buildCollection("paired")}},{html:(0,M.default)("Build List of Dataset Pairs"),func:function(){e.buildCollection("list:paired")}}]},buildCollection:function(e,t,i){var n,s=this,t=t||s.getSelectedModels(),i=i||!1;"list"==e?n=b.default.createListCollection:"paired"==e?n=C.default.createPairCollection:"list:paired"==e?n=k.default.createListOfPairsCollection:console.warn("Unknown collectionType encountered "+e),n(t,i).done(function(){s.model.refresh()})},_getItemViewOptions:function(e){var t=I.prototype._getItemViewOptions.call(this,e);return n.extend(t,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),t},_handleItemDeletedChange:function(e){e.get("deleted")?this._handleItemDeletion(e):this._handleItemUndeletion(e),this._renderCounts()},_handleItemDeletion:function(e){var t=this.model.get("contents_active");t.deleted+=1,t.active-=1,this.model.contents.includeDeleted||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUndeletion:function(e){var t=this.model.get("contents_active");t.deleted-=1,this.model.contents.includeDeleted||(t.active-=1),this.model.set("contents_active",t)},_handleItemVisibleChange:function(e){e.hidden()?this._handleItemHidden(e):this._handleItemUnhidden(e),this._renderCounts()},_handleItemHidden:function(e){var t=this.model.get("contents_active");t.hidden+=1,t.active-=1,this.model.contents.includeHidden||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUnhidden:function(e){var t=this.model.get("contents_active");t.hidden-=1,this.model.contents.includeHidden||(t.active-=1),this.model.set("contents_active",t)},toggleHDATagEditors:function(e,t){n.each(this.views,function(i){i.tagsEditor&&i.tagsEditor.toggle(e,t)})},toggleHDAAnnotationEditors:function(e,t){n.each(this.views,function(i){i.annotationEditor&&i.annotationEditor.toggle(e,t)})},events:n.extend(n.clone(I.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(e){this.toggleShowDeleted()},"click .toggle-hidden-link":function(e){this.toggleShowHidden()}}),_renderSearchProgress:function(e,t){var i=e+t;return this.$("> .controls .subtitle").html(["<i>",(0,M.default)("Searching "),i,"/",this.model.contentsShown(),"</i>"].join(""))},_renderSearchFindings:function(t){t=t instanceof e?t:this.$el;var i=this.templates.found(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i),this},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var e={dragenter:n.bind(this.dragenter,this),dragover:n.bind(this.dragover,this),dragleave:n.bind(this.dragleave,this),drop:n.bind(this.drop,this)},t=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),t]);for(var i in e)e.hasOwnProperty(i)&&t.on(i,e[i]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),s("<div/>").addClass("history-drop-target")},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),s("<div/>").addClass("history-drop-target-help").text((0,M.default)("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var e=this.$(".history-drop-target").get(0);for(var t in this._dropHandlers)this._dropHandlers.hasOwnProperty(t)&&e.off(t,this._dropHandlers[t]);return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(e){e.preventDefault(),e.stopPropagation()},dragleave:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(e){e.preventDefault();var t=this,i=e.originalEvent.dataTransfer,n=i.getData("text");i.dropEffect="move";try{n=JSON.parse(n)}catch(e){t.warn("error parsing JSON from drop:",n)}return t.trigger("droptarget:drop",e,n,t),!1},dataDropped:function(t){var i=this;return n.isObject(t)&&"HistoryDatasetAssociation"===t.model_class&&t.id?0!==i.contents.currentPage?i.contents.fetchPage(0).then(function(){return i.model.contents.copy(t.id)}):i.model.contents.copy(t.id):e.when()},toString:function(){return"HistoryViewEdit("+(this.model?this.model.get("name"):"")+")"}});L.prototype.templates=function(){var e=D.default.wrapTemplate(["<% var shown = Math.max( view.views.length, history.contents_active.active ) %>","<% if( shown ){ %>",'<span class="shown-count">',"<%- shown %> ",(0,M.default)("shown"),"</span>","<% } %>","<% if( history.contents_active.deleted ){ %>",'<span class="deleted-count">',"<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>","<% } else { %>","<%- history.contents_active.deleted %> ",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("deleted"),"</a>","<% } %>","</span>","<% } %>","<% if( history.contents_active.hidden ){ %>",'<span class="hidden-count">',"<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>","<%- history.contents_active.hidden %> ",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hidden"),"</a>","<% } %>","</span>","<% } %>"],"history"),t=D.default.wrapTemplate([(0,M.default)("Found")," <%- view.views.length %>, ","<% if( history.contents_active.deleted ){ %>","<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>, ","<% } else { %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("show deleted"),"</a>, ","<% } %>","<% } %>","<% if( history.contents_active.hidden ){ %>","<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("show hidden"),"</a>","<% } %>","<% } %>"],"history");return n.extend(n.clone(I.prototype.templates),{counts:e,found:t})}(),t.default={HistoryViewEdit:L}}).call(t,i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(117),o=s(a),l=i(62),r=s(l),d=i(63),c=s(d),u=i(64),h=(s(u),i(119)),f=s(h),p=i(121),m=s(p),g=i(24),_=(s(g),i(113)),v=s(_),y=i(21),w=s(y),b=i(5),x=s(b),C=i(3),$=s(C);i(118);var k=o.default.ModelListPanel,S=k.extend({_logNamespace:"history",HDAViewClass:f.default.HDAListItemView,HDCAViewClass:m.default.HDCAListItemView,collectionClass:c.default.HistoryContents,modelCollectionKey:"contents",tagName:"div",className:k.prototype.className+" history-panel",emptyMsg:(0,$.default)("This history is empty"),noneFoundMsg:(0,$.default)("No matching datasets found"),searchPlaceholder:(0,$.default)("search datasets"),initialize:function(e){k.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_createDefaultCollection:function(){return new this.collectionClass([],{history:this.model})},freeModel:function(){return k.prototype.freeModel.call(this),this.model&&this.model.stopPolling(),this},_setUpListeners:function(){k.prototype._setUpListeners.call(this),this.on({error:function(e,t,i,n,s){this.errorHandler(e,t,i,n,s)},"views:ready view:attached view:removed":function(e){this._renderSelectButton()},"view:attached":function(e){this.scrollTo(0)}})},loadHistory:function(t,i,n){var s=this;return n=e.extend(n||{silent:!0}),this.info("loadHistory:",t,i,n),this.setModel(new r.default.History({id:t})),n.silent=!0,this.trigger("loading"),this.model.fetchWithContents(i,n).always(function(){s.render(),s.trigger("loading-done")})},refreshContents:function(e){return this.model?this.model.refresh(e):n.when()},_setUpCollectionListeners:function(){return k.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"fetching-more":function(){this._toggleContentsLoadingIndicator(!0),this.$emptyMessage().hide()},"fetching-more-done":function(){this._toggleContentsLoadingIndicator(!1)}})},_showLoadingIndicator:function(t,i,s){var a=n('<div class="loading-indicator"/>');this.$el.html(a.text(t).slideDown(e.isUndefined(i)?this.fxSpeed:i))},_hideLoadingIndicator:function(t){this.$(".loading-indicator").slideUp(e.isUndefined(t)?this.fxSpeed+200:t,function(){n(this).remove()})},_buildNewRender:function(){var e=k.prototype._buildNewRender.call(this);return this._renderSelectButton(e),e},_renderSelectButton:function(e){if(e=e||this.$el,!this.multiselectActions().length)return null;if(!this.views.length)return this.hideSelectors(),e.find(".controls .actions .show-selectors-btn").remove(),null;var t=e.find(".controls .actions .show-selectors-btn");return t.length?t:(0,w.default)({title:(0,$.default)("Operations on multiple datasets"),classes:"show-selectors-btn",faIcon:"fa-check-square-o"}).prependTo(e.find(".controls .actions"))},_renderEmptyMessage:function(e){var t=this.$emptyMessage(e);return this.model.get("contents_active").active<=0?t.empty().append(this.emptyMsg).show():this.searchFor&&this.model.contents.haveSearchDetails()&&!this.views.length?t.empty().append(this.noneFoundMsg).show():(t.hide(),n())},$scrollContainer:function(e){return this.$list(e)},_toggleContentsLoadingIndicator:function(e){e?this.$list().html('<div class="contents-loading-indicator"><span class="fa fa-2x fa-spinner fa-spin"/></div>'):this.$list().find(".contents-loading-indicator").remove()},renderItems:function(e){e=e||this.$el;var t=this.$list(e);n(".tooltip").remove(),t.empty(),this.views=[];var i=this._filterCollection();return i.length?(this._renderPagination(e),this.views=this._renderSomeItems(i,t)):e.find("> .controls .list-pagination").empty(),this._renderEmptyMessage(e).toggle(!i.length),this.trigger("views:ready",this.views),this.views},_renderPagination:function(e){var t=e.find("> .controls .list-pagination");return this.searchFor||!this.model.contents.shouldPaginate()?t.empty():(t.html(this.templates.pagination({current:this.model.contents.currentPage+1,last:this.model.contents.getLastPage()+1},this)),t.find("select.pages").tooltip(),t)},_renderSomeItems:function(e,t){var i=this,n=[];return t.append(e.map(function(e){var t=i._createItemView(e);return n.push(t),i._renderItemView$el(t)})),n},_filterItem:function(e){var t=this.model.contents;return(t.includeHidden||!e.hidden())&&(t.includeDeleted||!e.isDeletedOrPurged())&&k.prototype._filterItem.call(this,e)},_getItemViewClass:function(e){var t=e.get("history_content_type");switch(t){case"dataset":return this.HDAViewClass;case"dataset_collection":return this.HDCAViewClass}throw new TypeError("Unknown history_content_type: "+t)},_getItemViewOptions:function(t){var i=k.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,expanded:this.model.contents.storage.isExpanded(t.id),hasUser:this.model.ownedByCurrUser()})},_setUpItemViewListeners:function(e){var t=this;return k.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{expanded:function(e){t.model.contents.storage.addExpanded(e.model)},collapsed:function(e){t.model.contents.storage.removeExpanded(e.model)}})},collapseAll:function(){this.model.contents.storage.clearExpanded(),k.prototype.collapseAll.call(this)},getSelectedModels:function(){var e=k.prototype.getSelectedModels.call(this);return e.historyId=this.collection.historyId,e},events:e.extend(e.clone(k.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click > .controls .prev":"_clickPrevPage","click > .controls .next":"_clickNextPage","change > .controls .pages":"_changePageSelect","click .messages [class$=message]":"clearMessages"}),_clickPrevPage:function(e){this.model.stopPolling(),this.model.contents.fetchPrevPage()},_clickNextPage:function(e){this.model.stopPolling(),this.model.contents.fetchNextPage()},_changePageSelect:function(e){this.model.stopPolling();var t=n(e.currentTarget).val();this.model.contents.fetchPage(t)},toggleShowDeleted:function(e,t){e=void 0!==e?e:!this.model.contents.includeDeleted;var i=this.model.contents;return i.setIncludeDeleted(e,t),this.trigger("show-deleted",e),i.fetchCurrentPage({renderAll:!0}),e},toggleShowHidden:function(e,t,i){e=void 0!==e?e:!this.model.contents.includeHidden;var n=this.model.contents;return n.setIncludeHidden(e,i),this.trigger("show-hidden",e),n.fetchCurrentPage({renderAll:!0}),e},_firstSearch:function(e){var t=this;if(this.log("onFirstSearch",e),this.model.contents.haveSearchDetails())return void this.searchItems(e);this.$("> .controls .search-input").searchInput("toggle-loading"),this.searchFor=e;this.model.contents.progressivelyFetchDetails({silent:!0}).progress(function(e,i,n){t.renderItems(),t.trigger("search:loading-progress",i,n)}).always(function(){t.$el.find("> .controls .search-input").searchInput("toggle-loading")}).done(function(){t.searchItems(e,"force")})},clearSearch:function(e){var t=this;return this.searchFor?(this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.model.contents.fetchCurrentPage({silent:!0}).done(function(){t.renderItems()}),this):this},errorHandler:function(t,i,n){if(!i||0!==i.status||0!==i.readyState){if(this.error(t,i,n),e.isString(t)&&e.isString(i)){var s=t,a=i;return v.default.errorModal(s,a,n)}return i&&502===i.status?v.default.badGatewayErrorModal():v.default.ajaxErrorModal(t,i,n)}},clearMessages:function(t){return(e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget)).fadeOut(this.fxSpeed,function(){n(this).remove()}),this},scrollToHid:function(t){return this.scrollToItem(e.first(this.viewsWhereModel({hid:t})))},ordinalIndicator:function(e){var t=""+e;switch(t.charAt(t.length-1)){case"1":return t+"st";case"2":return t+"nd";case"3":return t+"rd";default:return t+"th"}},toString:function(){return"HistoryView("+(this.model?this.model.get("name"):"")+")"}});S.prototype.templates=function(){var t=function(){return'<div>\n            <div class="controls"></div>\n            <ul class="list-items"></ul>\n            <div class="empty-message infomessagesmall"></div>\',\n        </div>'},i=x.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- history.name %></div>',"</div>",'<div class="subtitle"></div>','<div class="history-size"><%- history.nice_size %></div>','<div class="actions"></div>','<div class="messages">',"<% if( history.deleted && history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been purged and deleted"),"</div>","<% } else if( history.deleted ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been deleted"),"</div>","<% } else if( history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been purged"),"</div>","<% } %>","<% if( history.message ){ %>",'<div class="<%= history.message.level || "info" %>messagesmall">',"<%= history.message.text %>","</div>","<% } %>","</div>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,$.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,$.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>",'<div class="list-pagination form-inline"></div>',"</div>"],"history"),n=x.default.wrapTemplate(['<button class="prev" <%- pages.current === 1 ? "disabled" : "" %>>previous</button>','<select class="pages form-control" ','title="',(0,$.default)("Click to open and select a page. Begin typing a page number to select it"),'">',"<% _.range( 1, pages.last + 1 ).forEach( function( i ){ %>",'<option value="<%- i - 1 %>" <%- i === pages.current ? "selected" : "" %>>',"<%- view.ordinalIndicator( i ) %> of <%- pages.last %> pages","</option>","<% }); %>","</select>",'<button class="next" <%- pages.current === pages.last ? 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diff --git a/static/scripts/bundled/extended.bundled.js b/static/scripts/bundled/extended.bundled.js
index b9220ce1c7d..d60ee6ba476 100644
--- a/static/scripts/bundled/extended.bundled.js
+++ b/static/scripts/bundled/extended.bundled.js
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If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=i.extend(this.options,e),this.fetchExtAndGenomes(),this.options.id&&this.fetchDataset()},fetchDataset:function(e){this.options=i.extend(this.options,e),this.model=new d.default.Item({id:this.options.id});var t=this;this.model.fetch({success:function(){t.options.show_permissions?t.showPermissions():t.options.show_version?t.fetchVersion():t.render()},error:function(e,t){void 0!==t.responseJSON?l.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):l.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(e){this.options=i.extend(this.options,e),r(".tooltip").remove();var t=this.templateDataset();this.$el.html(t({item:this.model})),r(".peek").html(this.model.get("peek")),r("#center [data-toggle]").tooltip()},fetchVersion:function(e){this.options=i.extend(this.options,e);var t=this;this.options.ldda_id?(this.ldda=new d.default.Ldda({id:this.options.ldda_id}),this.ldda.url=this.ldda.urlRoot+this.model.id+"/versions/"+this.ldda.id,this.ldda.fetch({success:function(){t.renderVersion()},error:function(e,t){void 0!==t.responseJSON?l.default.error(t.responseJSON.err_msg):l.default.error("An error occurred.")}})):(this.render(),l.default.error("Library dataset version requested but no id provided."))},renderVersion:function(){r(".tooltip").remove();var e=this.templateVersion();this.$el.html(e({item:this.model,ldda:this.ldda})),r(".peek").html(this.ldda.get("peek"))},enableModification:function(){r(".tooltip").remove();var e=this.templateModifyDataset();this.$el.html(e({item:this.model})),this.renderSelectBoxes({genome_build:this.model.get("genome_build"),file_ext:this.model.get("file_ext")}),r(".peek").html(this.model.get("peek")),r("#center [data-toggle]").tooltip()},downloadDataset:function(){var e=Galaxy.root+"api/libraries/datasets/download/uncompressed",t={ld_ids:this.id};this.processDownload(e,t)},processDownload:function(e,t,n){if(e&&t){t="string"==typeof t?t:r.param(t);var i="";r.each(t.split("&"),function(){var e=this.split("=");i+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),r('<form action="'+e+'" method="'+(n||"post")+'">'+i+"</form>").appendTo("body").submit().remove(),l.default.info("Your download will begin soon.")}},importIntoHistory:function(){this.refreshUserHistoriesList(function(e){var t=e.templateBulkImportInModal();e.modal=Galaxy.modal,e.modal.show({closing_events:!0,title:"Import into History",body:t({histories:e.histories.models}),buttons:{Import:function(){e.importCurrentIntoHistory()},Close:function(){Galaxy.modal.hide()}}})})},refreshUserHistoriesList:function(e){var t=this;this.histories=new d.default.GalaxyHistories,this.histories.fetch({success:function(n){0===n.length?l.default.warning("You have to create history first. Click this to do so.","",{onclick:function(){window.location=Galaxy.root}}):e(t)},error:function(e,t){void 0!==t.responseJSON?l.default.error(t.responseJSON.err_msg):l.default.error("An error occurred.")}})},importCurrentIntoHistory:function(){this.modal.disableButton("Import");var e=this.modal.$("input[name=history_name]").val(),t=this;if(""!==e)r.post(Galaxy.root+"api/histories",{name:e}).done(function(e){t.processImportToHistory(e.id)}).fail(function(e,t,n){l.default.error("An error occurred.")}).always(function(){t.modal.enableButton("Import")});else{var n=r(this.modal.$el).find("select[name=dataset_import_single] option:selected").val();this.processImportToHistory(n),this.modal.enableButton("Import")}},processImportToHistory:function(e){var t=new d.default.HistoryItem;t.url=t.urlRoot+e+"/contents",a.getJSON(Galaxy.root+"history/set_as_current?id="+e),t.save({content:this.id,source:"library"},{success:function(){Galaxy.modal.hide(),l.default.success("Dataset imported. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}})},error:function(e,t){void 0!==t.responseJSON?l.default.error("Dataset not imported. "+t.responseJSON.err_msg):l.default.error("An error occured. Dataset not imported. Please try again.")}})},showPermissions:function(e){var t=this.templateDatasetPermissions(),n=this;this.options=i.extend(this.options,e),r(".tooltip").remove(),void 0!==this.options.fetched_permissions&&(0===this.options.fetched_permissions.access_dataset_roles.length?this.model.set({is_unrestricted:!0}):this.model.set({is_unrestricted:!1})),this.$el.html(t({item:this.model,is_admin:Galaxy.config.is_admin_user})),r.get(Galaxy.root+"api/libraries/datasets/"+n.id+"/permissions?scope=current").done(function(e){n.prepareSelectBoxes({fetched_permissions:e,is_admin:Galaxy.config.is_admin_user})}).fail(function(){l.default.error("An error occurred while attempting to fetch dataset permissions.")}),r("#center [data-toggle]").tooltip(),r("#center").css("overflow","auto")},_serializeRoles:function(e){for(var t=[],n=0;n<e.length;n++)t.push(e[n][1]+":"+e[n][0].replace(":"," ").replace(","," &"));return t},prepareSelectBoxes:function(e){this.options=i.extend(this.options,e),this.accessSelectObject=new p.default.View(this._generate_select_options({selector:"access_perm",initialData:this._serializeRoles(this.options.fetched_permissions.access_dataset_roles)})),this.modifySelectObject=new p.default.View(this._generate_select_options({selector:"modify_perm",initialData:this._serializeRoles(this.options.fetched_permissions.modify_item_roles)})),this.manageSelectObject=new p.default.View(this._generate_select_options({selector:"manage_perm",initialData:this._serializeRoles(this.options.fetched_permissions.manage_dataset_roles)}))},_generate_select_options:function(e){var t={minimumInputLength:0,multiple:!0,placeholder:"Click to select a role",formatResult:function(e){return e.name+" type: "+e.type},formatSelection:function(e){return e.name},initSelection:function(e,t){var n=[];r(e.val().split(",")).each(function(){var e=this.split(":");n.push({id:e[0],name:e[1]})}),t(n)},dropdownCssClass:"bigdrop"};return t.container=this.$el.find("#"+e.selector),t.css=e.selector,t.initialData=e.initialData.join(","),t.ajax={url:Galaxy.root+"api/libraries/datasets/"+this.id+"/permissions?scope=available",dataType:"json",quietMillis:100,data:function(e,t){return{q:e,page_limit:10,page:t}},results:function(e,t){var n=10*t<e.total;return{results:e.roles,more:n}}},t},saveModifications:function(e){var t=!1,n=this.model,i=this.$el.find(".input_dataset_name").val();if(void 0!==i&&i!==n.get("name")){if(!(i.length>0))return void l.default.warning("Library dataset name has to be at least 1 character long.");n.set("name",i),t=!0}var r=this.$el.find(".input_dataset_misc_info").val();void 0!==r&&r!==n.get("misc_info")&&(n.set("misc_info",r),t=!0);var a=this.select_genome.$el.select2("data").id;void 0!==a&&a!==n.get("genome_build")&&(n.set("genome_build",a),t=!0);var o=this.select_extension.$el.select2("data").id;void 0!==o&&o!==n.get("file_ext")&&(n.set("file_ext",o),t=!0);var s=this;t?n.save(null,{patch:!0,success:function(e){s.render(),l.default.success("Changes to library dataset saved.")},error:function(e,t){void 0!==t.responseJSON?l.default.error(t.responseJSON.err_msg):l.default.error("An error occured while attempting to update the library dataset.")}}):(s.render(),l.default.info("Nothing has changed."))},copyToClipboard:function(t){t.preventDefault();var n=e.history.location.href;-1!==n.lastIndexOf("/permissions")&&(n=n.substr(0,n.lastIndexOf("/permissions"))),window.prompt("Copy to clipboard: Ctrl+C, Enter",n)},makeDatasetPrivate:function(){var e=this;r.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=make_private").done(function(t){e.model.set({is_unrestricted:!1}),e.showPermissions({fetched_permissions:t}),l.default.success("The dataset is now private to you.")}).fail(function(){l.default.error("An error occurred while attempting to make dataset private.")})},removeDatasetRestrictions:function(){var e=this;r.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=remove_restrictions").done(function(t){e.model.set({is_unrestricted:!0}),e.showPermissions({fetched_permissions:t}),l.default.success("Access to this dataset is now unrestricted.")}).fail(function(){l.default.error("An error occurred while attempting to make dataset unrestricted.")})},_extractIds:function(e){for(var t=[],n=e.length-1;n>=0;n--)t.push(e[n].id);return t},savePermissions:function(e){var t=this,n=this._extractIds(this.accessSelectObject.$el.select2("data")),i=this._extractIds(this.manageSelectObject.$el.select2("data")),a=this._extractIds(this.modifySelectObject.$el.select2("data"));r.post(Galaxy.root+"api/libraries/datasets/"+t.id+"/permissions?action=set_permissions",{"access_ids[]":n,"manage_ids[]":i,"modify_ids[]":a}).done(function(e){t.showPermissions({fetched_permissions:e}),l.default.success("Permissions saved.")}).fail(function(){l.default.error("An error occurred while attempting to set dataset permissions.")})},fetchExtAndGenomes:function(){var e=this;0==this.list_genomes.length&&h.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){for(var n in t)e.list_extensions.push({id:t[n].extension,text:t[n].extension,description:t[n].description,description_url:t[n].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)}}),0==this.list_extensions.length&&h.default.get({url:Galaxy.root+"api/genomes",success:function(t){for(var n in t)e.list_genomes.push({id:t[n][1],text:t[n][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})}})},renderSelectBoxes:function(e){var t=this,n="?",i="auto";void 0!==e&&(void 0!==e.genome_build&&(n=e.genome_build),void 0!==e.file_ext&&(i=e.file_ext)),this.select_genome=new p.default.View({css:"dataset-genome-select",data:t.list_genomes,container:t.$el.find("#dataset_genome_select"),value:n}),this.select_extension=new p.default.View({css:"dataset-extension-select",data:t.list_extensions,container:t.$el.find("#dataset_extension_select"),value:i})},templateDataset:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<button data-toggle="tooltip" data-placement="top" title="Download dataset" class="btn btn-default toolbtn-download-dataset primary-button toolbar-item" type="button">','<span class="fa fa-download"></span>',"&nbsp;Download","</button>",'<button data-toggle="tooltip" data-placement="top" title="Import dataset into history" class="btn btn-default toolbtn-import-dataset primary-button toolbar-item" type="button">','<span class="fa fa-book"></span>',"&nbsp;to History","</button>",'<% if (item.get("can_user_modify")) { %>','<button data-toggle="tooltip" data-placement="top" title="Modify library item" 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%>","</ol>",'<% if (item.get("is_unrestricted")) { %>',"<div>",'This dataset is unrestricted so everybody with the link can access it. 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If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=i.extend(this.options,e),this.fetchExtAndGenomes(),this.options.id&&this.fetchDataset()},fetchDataset:function(e){this.options=i.extend(this.options,e),this.model=new h.default.Item({id:this.options.id});var t=this;this.model.fetch({success:function(){t.options.show_permissions?t.showPermissions():t.options.show_version?t.fetchVersion():t.render()},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):d.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(e){this.options=i.extend(this.options,e),r(".tooltip").remove();var t=this.templateDataset();this.$el.html(t({item:this.model})),r(".peek").html(this.model.get("peek")),r("#center [data-toggle]").tooltip()},fetchVersion:function(e){this.options=i.extend(this.options,e);var t=this;this.options.ldda_id?(this.ldda=new h.default.Ldda({id:this.options.ldda_id}),this.ldda.url=this.ldda.urlRoot+this.model.id+"/versions/"+this.ldda.id,this.ldda.fetch({success:function(){t.renderVersion()},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})):(this.render(),d.default.error("Library dataset version requested but no id provided."))},renderVersion:function(){r(".tooltip").remove();var e=this.templateVersion();this.$el.html(e({item:this.model,ldda:this.ldda})),r(".peek").html(this.ldda.get("peek"))},enableModification:function(){r(".tooltip").remove();var e=this.templateModifyDataset();this.$el.html(e({item:this.model})),this.renderSelectBoxes({genome_build:this.model.get("genome_build"),file_ext:this.model.get("file_ext")}),r(".peek").html(this.model.get("peek")),r("#center [data-toggle]").tooltip()},downloadDataset:function(){var e=Galaxy.root+"api/libraries/datasets/download/uncompressed",t={ld_ids:this.id};this.processDownload(e,t)},processDownload:function(e,t,n){if(e&&t){t="string"==typeof t?t:r.param(t);var i="";r.each(t.split("&"),function(){var e=this.split("=");i+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),r('<form action="'+e+'" method="'+(n||"post")+'">'+i+"</form>").appendTo("body").submit().remove(),d.default.info("Your download will begin soon.")}},importIntoHistory:function(){this.refreshUserHistoriesList(function(e){var t=e.templateBulkImportInModal();e.modal=Galaxy.modal,e.modal.show({closing_events:!0,title:(0,l.default)("Import into History"),body:t({histories:e.histories.models}),buttons:{Import:function(){e.importCurrentIntoHistory()},Close:function(){Galaxy.modal.hide()}}})})},refreshUserHistoriesList:function(e){var t=this;this.histories=new h.default.GalaxyHistories,this.histories.fetch({success:function(n){0===n.length?d.default.warning("You have to create history first. Click this to do so.","",{onclick:function(){window.location=Galaxy.root}}):e(t)},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})},importCurrentIntoHistory:function(){this.modal.disableButton("Import");var e=this.modal.$("input[name=history_name]").val(),t=this;if(""!==e)r.post(Galaxy.root+"api/histories",{name:e}).done(function(e){t.processImportToHistory(e.id)}).fail(function(e,t,n){d.default.error("An error occurred.")}).always(function(){t.modal.enableButton("Import")});else{var n=r(this.modal.$el).find("select[name=dataset_import_single] option:selected").val();this.processImportToHistory(n),this.modal.enableButton("Import")}},processImportToHistory:function(e){var t=new h.default.HistoryItem;t.url=t.urlRoot+e+"/contents",a.getJSON(Galaxy.root+"history/set_as_current?id="+e),t.save({content:this.id,source:"library"},{success:function(){Galaxy.modal.hide(),d.default.success("Dataset imported. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}})},error:function(e,t){void 0!==t.responseJSON?d.default.error("Dataset not imported. "+t.responseJSON.err_msg):d.default.error("An error occured. Dataset not imported. Please try again.")}})},showPermissions:function(e){var t=this.templateDatasetPermissions(),n=this;this.options=i.extend(this.options,e),r(".tooltip").remove(),void 0!==this.options.fetched_permissions&&(0===this.options.fetched_permissions.access_dataset_roles.length?this.model.set({is_unrestricted:!0}):this.model.set({is_unrestricted:!1})),this.$el.html(t({item:this.model,is_admin:Galaxy.config.is_admin_user})),r.get(Galaxy.root+"api/libraries/datasets/"+n.id+"/permissions?scope=current").done(function(e){n.prepareSelectBoxes({fetched_permissions:e,is_admin:Galaxy.config.is_admin_user})}).fail(function(){d.default.error("An error occurred while attempting to fetch dataset permissions.")}),r("#center [data-toggle]").tooltip(),r("#center").css("overflow","auto")},_serializeRoles:function(e){for(var t=[],n=0;n<e.length;n++)t.push(e[n][1]+":"+e[n][0].replace(":"," ").replace(","," &"));return t},prepareSelectBoxes:function(e){this.options=i.extend(this.options,e),this.accessSelectObject=new g.default.View(this._generate_select_options({selector:"access_perm",initialData:this._serializeRoles(this.options.fetched_permissions.access_dataset_roles)})),this.modifySelectObject=new g.default.View(this._generate_select_options({selector:"modify_perm",initialData:this._serializeRoles(this.options.fetched_permissions.modify_item_roles)})),this.manageSelectObject=new g.default.View(this._generate_select_options({selector:"manage_perm",initialData:this._serializeRoles(this.options.fetched_permissions.manage_dataset_roles)}))},_generate_select_options:function(e){var t={minimumInputLength:0,multiple:!0,placeholder:"Click to select a role",formatResult:function(e){return e.name+" type: "+e.type},formatSelection:function(e){return e.name},initSelection:function(e,t){var n=[];r(e.val().split(",")).each(function(){var e=this.split(":");n.push({id:e[0],name:e[1]})}),t(n)},dropdownCssClass:"bigdrop"};return t.container=this.$el.find("#"+e.selector),t.css=e.selector,t.initialData=e.initialData.join(","),t.ajax={url:Galaxy.root+"api/libraries/datasets/"+this.id+"/permissions?scope=available",dataType:"json",quietMillis:100,data:function(e,t){return{q:e,page_limit:10,page:t}},results:function(e,t){var n=10*t<e.total;return{results:e.roles,more:n}}},t},saveModifications:function(e){var t=!1,n=this.model,i=this.$el.find(".input_dataset_name").val();if(void 0!==i&&i!==n.get("name")){if(!(i.length>0))return void d.default.warning("Library dataset name has to be at least 1 character long.");n.set("name",i),t=!0}var r=this.$el.find(".input_dataset_misc_info").val();void 0!==r&&r!==n.get("misc_info")&&(n.set("misc_info",r),t=!0);var a=this.select_genome.$el.select2("data").id;void 0!==a&&a!==n.get("genome_build")&&(n.set("genome_build",a),t=!0);var o=this.select_extension.$el.select2("data").id;void 0!==o&&o!==n.get("file_ext")&&(n.set("file_ext",o),t=!0);var s=this;t?n.save(null,{patch:!0,success:function(e){s.render(),d.default.success("Changes to library dataset saved.")},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occured while attempting to update the library dataset.")}}):(s.render(),d.default.info("Nothing has changed."))},copyToClipboard:function(t){t.preventDefault();var n=e.history.location.href;-1!==n.lastIndexOf("/permissions")&&(n=n.substr(0,n.lastIndexOf("/permissions"))),window.prompt("Copy to clipboard: Ctrl+C, Enter",n)},makeDatasetPrivate:function(){var e=this;r.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=make_private").done(function(t){e.model.set({is_unrestricted:!1}),e.showPermissions({fetched_permissions:t}),d.default.success("The dataset is now private to you.")}).fail(function(){d.default.error("An error occurred while attempting to make dataset private.")})},removeDatasetRestrictions:function(){var e=this;r.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=remove_restrictions").done(function(t){e.model.set({is_unrestricted:!0}),e.showPermissions({fetched_permissions:t}),d.default.success("Access to this dataset is now unrestricted.")}).fail(function(){d.default.error("An error occurred while attempting to make dataset unrestricted.")})},_extractIds:function(e){for(var t=[],n=e.length-1;n>=0;n--)t.push(e[n].id);return t},savePermissions:function(e){var t=this,n=this._extractIds(this.accessSelectObject.$el.select2("data")),i=this._extractIds(this.manageSelectObject.$el.select2("data")),a=this._extractIds(this.modifySelectObject.$el.select2("data"));r.post(Galaxy.root+"api/libraries/datasets/"+t.id+"/permissions?action=set_permissions",{"access_ids[]":n,"manage_ids[]":i,"modify_ids[]":a}).done(function(e){t.showPermissions({fetched_permissions:e}),d.default.success("Permissions saved.")}).fail(function(){d.default.error("An error occurred while attempting to set dataset permissions.")})},fetchExtAndGenomes:function(){var e=this;0==this.list_genomes.length&&p.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){for(var n in t)e.list_extensions.push({id:t[n].extension,text:t[n].extension,description:t[n].description,description_url:t[n].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)}}),0==this.list_extensions.length&&p.default.get({url:Galaxy.root+"api/genomes",success:function(t){for(var n in t)e.list_genomes.push({id:t[n][1],text:t[n][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})}})},renderSelectBoxes:function(e){var t=this,n="?",i="auto";void 0!==e&&(void 0!==e.genome_build&&(n=e.genome_build),void 0!==e.file_ext&&(i=e.file_ext)),this.select_genome=new g.default.View({css:"dataset-genome-select",data:t.list_genomes,container:t.$el.find("#dataset_genome_select"),value:n}),this.select_extension=new g.default.View({css:"dataset-extension-select",data:t.list_extensions,container:t.$el.find("#dataset_extension_select"),value:i})},templateDataset:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<button data-toggle="tooltip" data-placement="top" title="Download dataset" class="btn btn-default toolbtn-download-dataset primary-button toolbar-item" type="button">','<span class="fa fa-download"></span>',"&nbsp;Download","</button>",'<button data-toggle="tooltip" data-placement="top" title="Import dataset into history" class="btn btn-default toolbtn-import-dataset primary-button toolbar-item" type="button">','<span class="fa fa-book"></span>',"&nbsp;to History","</button>",'<% if (item.get("can_user_modify")) { %>','<button data-toggle="tooltip" data-placement="top" title="Modify library item" class="btn btn-default toolbtn_modify_dataset primary-button toolbar-item" type="button">','<span class="fa fa-pencil"></span>',"&nbsp;Modify","</button>","<% } %>",'<% if (item.get("can_user_manage")) { %>','<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" title="Manage permissions" class="btn btn-default toolbtn_change_permissions primary-button toolbar-item" type="button">','<span class="fa fa-group"></span>',"&nbsp;Permissions","</button>","</a>","<% } %>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<% if (item.get("is_unrestricted")) { %>',"<div>",'This dataset is unrestricted so everybody with the link can access it. Just share <span class="copy-link-to-clipboard"><a href=""a>this page</a></span>.',"</div>","<% } %>",'<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th class="dataset-first-column" scope="row" id="id_row" data-id="<%= _.escape(item.get("ldda_id")) %>">Name</th>','<td><%= _.escape(item.get("name")) %></td>',"</tr>",'<% if (item.get("file_ext")) { %>',"<tr>",'<th scope="row">Data type</th>','<td><%= _.escape(item.get("file_ext")) %></td>',"</tr>","<% } %>",'<% if (item.get("genome_build")) { %>',"<tr>",'<th scope="row">Genome build</th>','<td><%= _.escape(item.get("genome_build")) %></td>',"</tr>","<% } %>",'<% if (item.get("file_size")) { %>',"<tr>",'<th scope="row">Size</th>','<td><%= _.escape(item.get("file_size")) %></td>',"</tr>","<% } %>",'<% if (item.get("date_uploaded")) { %>',"<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(item.get("date_uploaded")) %></td>',"</tr>","<% } %>",'<% if (item.get("uploaded_by")) { %>',"<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(item.get("uploaded_by")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_data_lines")) { %>',"<tr>",'<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(item.get("metadata_data_lines")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_comment_lines")) { %>',"<tr>",'<th scope="row">Comment Lines</th>','<td scope="row"><%= _.escape(item.get("metadata_comment_lines")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_columns")) { %>',"<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(item.get("metadata_columns")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_column_types")) { %>',"<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(item.get("metadata_column_types")) %></td>',"</tr>","<% } %>",'<% if (item.get("message")) { %>',"<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(item.get("message")) %></td>',"</tr>","<% } %>",'<% if (item.get("misc_blurb")) { %>',"<tr>",'<th scope="row">Misc. blurb</th>','<td scope="row"><%= _.escape(item.get("misc_blurb")) %></td>',"</tr>","<% } %>",'<% if (item.get("misc_info")) { %>',"<tr>",'<th scope="row">Misc. info</th>','<td scope="row"><%= _.escape(item.get("misc_info")) %></td>',"</tr>","<% } %>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>",'<% if ( item.get("uuid") !== "ok" ) { %>',"<tr>",'<th scope="row">UUID</th>','<td scope="row"><%= _.escape(item.get("uuid")) %></td>',"</tr>","<% } %>",'<% if ( item.get("state") !== "ok" ) { %>',"<tr>",'<th scope="row">State</th>','<td scope="row"><%= _.escape(item.get("state")) %></td>',"</tr>","<% } %>","</table>",'<% if (item.get("job_stderr")) { %>',"<h4>Job Standard Error</h4>",'<pre class="code">','<%= _.escape(item.get("job_stderr")) %>',"</pre>","<% } %>",'<% if (item.get("job_stdout")) { %>',"<h4>Job Standard Output</h4>",'<pre class="code">','<%= _.escape(item.get("job_stdout")) %>',"</pre>","<% } %>","<div>",'<pre class="peek">',"</pre>","</div>",'<% if (item.get("has_versions")) { %>',"<div>","<h3>Expired versions:</h3>","<ul>",'<% _.each(item.get("expired_versions"), function(version) { %>','<li><a title="See details of this version" href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/versions/<%- version[0] %>"><%- version[1] %></a></li>',"<% }) %>","<ul>","</div>","<% } %>","</div>","</div>"].join(""))},templateVersion:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>">','<button data-toggle="tooltip" data-placement="top" title="Go to latest dataset" class="btn btn-default primary-button toolbar-item" type="button">','<span class="fa fa-caret-left fa-lg"></span>',"&nbsp;Latest dataset","</button>","<a>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<div class="alert alert-warning">This is an expired version of the library dataset: <%= _.escape(item.get("name")) %></div>','<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th scope="row" id="id_row" data-id="<%= _.escape(ldda.id) %>">Name</th>','<td><%= _.escape(ldda.get("name")) %></td>',"</tr>",'<% if (ldda.get("file_ext")) { %>',"<tr>",'<th scope="row">Data type</th>','<td><%= _.escape(ldda.get("file_ext")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("genome_build")) { %>',"<tr>",'<th scope="row">Genome build</th>','<td><%= _.escape(ldda.get("genome_build")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("file_size")) { %>',"<tr>",'<th scope="row">Size</th>','<td><%= _.escape(ldda.get("file_size")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("date_uploaded")) { %>',"<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(ldda.get("date_uploaded")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("uploaded_by")) { %>',"<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(ldda.get("uploaded_by")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_data_lines")) { %>',"<tr>",'<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(ldda.get("metadata_data_lines")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_comment_lines")) { %>',"<tr>",'<th scope="row">Comment Lines</th>','<td scope="row"><%= _.escape(ldda.get("metadata_comment_lines")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_columns")) { %>',"<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(ldda.get("metadata_columns")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_column_types")) { %>',"<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(ldda.get("metadata_column_types")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("message")) { %>',"<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(ldda.get("message")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("misc_blurb")) { %>',"<tr>",'<th scope="row">Miscellaneous blurb</th>','<td scope="row"><%= _.escape(ldda.get("misc_blurb")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("misc_info")) { %>',"<tr>",'<th scope="row">Miscellaneous information</th>','<td scope="row"><%= _.escape(ldda.get("misc_info")) %></td>',"</tr>","<% } %>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>","</table>","<div>",'<pre class="peek">',"</pre>","</div>","</div>","</div>"].join(""))},templateModifyDataset:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<button data-toggle="tooltip" data-placement="top" title="Cancel modifications" class="btn btn-default toolbtn_cancel_modifications primary-button toolbar-item" type="button">','<span class="fa fa-times"></span>',"&nbsp;Cancel","</button>",'<button data-toggle="tooltip" data-placement="top" title="Save modifications" class="btn btn-default toolbtn_save_modifications primary-button toolbar-item" type="button">','<span class="fa fa-floppy-o"></span>',"&nbsp;Save","</button>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); 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e=this.ext_to_type[e],t=this.ext_to_type[t],this.type_to_type[e]&&t in this.type_to_type[e]},prebuildNode:function(t,n,i){var r=this,a=e("<div class='toolForm toolFormInCanvas'/>"),o=e("<div class='toolFormTitle unselectable'><span class='nodeTitle'>"+n+"</div></div>");s(o.find(".nodeTitle"),t),a.append(o),a.css("left",e(window).scrollLeft()+20),a.css("top",e(window).scrollTop()+20),a.append(e("<div class='toolFormBody'></div>"));var l=new _.default(this,{element:a});l.type=t,l.content_id=i;var c="<div><img height='16' align='middle' src='"+Galaxy.root+"static/images/loading_small_white_bg.gif'/> loading tool info...</div>";a.find(".toolFormBody").append(c);var d=e("<div class='buttons' style='float: right;'></div>");d.append(e("<div/>").addClass("fa-icon-button fa fa-files-o").click(function(e){l.clone()})),d.append(e("<div/>").addClass("fa-icon-button fa fa-times").click(function(e){l.destroy()})),a.appendTo("#canvas-container");var u=e("#canvas-container").position(),h=e("#canvas-container").parent(),f=a.width(),p=a.height();return a.css({left:-u.left+h.width()/2-f/2,top:-u.top+h.height()/2-p/2}),d.prependTo(a.find(".toolFormTitle")),f+=d.width()+10,a.css("width",f),a.bind("dragstart",function(){r.workflow.activate_node(l)}).bind("dragend",function(){r.workflow.node_changed(this),r.workflow.fit_canvas_to_nodes(),r.canvas_manager.draw_overview()}).bind("dragclickonly",function(){r.workflow.activate_node(l)}).bind("drag",function(t,n){var i=e(this).offsetParent().offset(),r=n.offsetX-i.left,a=n.offsetY-i.top;e(this).css({left:r,top:a}),e(this).find(".terminal").each(function(){this.terminal.redraw()})}),l}})}).call(t,n(0),n(2),n(1))},286:function(e,t,n){"use strict";(function(e){function i(e,t){this.app=e,this.canvas_container=t,this.id_counter=0,this.nodes={},this.name=null,this.has_changes=!1,this.active_form_has_changes=!1,this.workflowOutputLabels={}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(125),a=function(e){return e&&e.__esModule?e:{default:e}}(r),o=n(7),s=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}(o);e.extend(i.prototype,{canLabelOutputWith:function(e){return!e||!(e in this.workflowOutputLabels)},registerOutputLabel:function(e){e&&(this.workflowOutputLabels[e]=!0)},unregisterOutputLabel:function(e){e&&delete this.workflowOutputLabels[e]},updateOutputLabel:function(e,t){e&&this.unregisterOutputLabel(e),this.canLabelOutputWith(t)||s.warning("Workflow contains duplicate workflow output labels "+t+". This must be fixed before it can be saved."),t&&this.registerOutputLabel(t)},attemptUpdateOutputLabel:function(e,t,n){return!!this.canLabelOutputWith(n)&&(e.labelWorkflowOutput(t,n),e.nodeView.redrawWorkflowOutputs(),!0)},create_node:function(e,t,n){var i=this.app.prebuildNode(e,t,n);return this.add_node(i),this.fit_canvas_to_nodes(),this.app.canvas_manager.draw_overview(),this.activate_node(i),i},add_node:function(e){e.id=this.id_counter,e.element.attr("id","wf-node-step-"+e.id),this.id_counter++,this.nodes[e.id]=e,this.has_changes=!0,e.workflow=this},remove_node:function(e){this.active_node==e&&this.clear_active_node(),delete this.nodes[e.id],this.has_changes=!0},remove_all:function(){var t=this;e.each(this.nodes,function(e,n){n.destroy(),t.remove_node(n)})},rectify_workflow_outputs:function(){var t=!1,n=!1;if(e.each(this.nodes,function(i,r){r.workflow_outputs&&r.workflow_outputs.length>0&&(t=!0),e.each(r.post_job_actions,function(e,t){"HideDatasetAction"===t.action_type&&(n=!0)})}),!1!==t||!1!==n){var i=this;e.each(this.nodes,function(n,r){if("tool"===r.type){var a=!1;null===r.post_job_actions&&(r.post_job_actions={},a=!0);var o=[];e.each(r.post_job_actions,function(e,t){"HideDatasetAction"==t.action_type&&o.push(e)}),o.length>0&&e.each(o,function(e,t){a=!0,delete r.post_job_actions[t]}),t&&e.each(r.output_terminals,function(e,t){if(!0==!r.isWorkflowOutput(t.name)){a=!0;var n={action_type:"HideDatasetAction",output_name:t.name,action_arguments:{}};r.post_job_actions["HideDatasetAction"+t.name]=null,r.post_job_actions["HideDatasetAction"+t.name]=n}}),i.active_node==r&&!0===a&&i.reload_active_node()}})}},to_simple:function(){var t={};return e.each(this.nodes,function(n,i){var r={};e.each(i.input_terminals,function(t,n){r[n.name]=null;var i=[];e.each(n.connectors,function(e,t){if(t.handle1){var a={id:t.handle1.node.id,output_name:t.handle1.name},o=n.attributes.input.input_subworkflow_step_id;void 0!==o&&(a.input_subworkflow_step_id=o),i[e]=a,r[n.name]=i}})});var a={};i.post_job_actions&&e.each(i.post_job_actions,function(e,t){var n={action_type:t.action_type,output_name:t.output_name,action_arguments:t.action_arguments};a[t.action_type+t.output_name]=null,a[t.action_type+t.output_name]=n}),i.workflow_outputs||(i.workflow_outputs=[]);var o={id:i.id,type:i.type,content_id:i.content_id,tool_version:i.config_form.version,tool_state:i.tool_state,errors:i.errors,input_connections:r,position:e(i.element).position(),annotation:i.annotation,post_job_actions:i.post_job_actions,uuid:i.uuid,label:i.label,workflow_outputs:i.workflow_outputs};t[i.id]=o}),{steps:t}},from_simple:function(t,n){var i=void 0===n||n,r=this,o=0;i?r.name=t.name:o=Object.keys(r.nodes).length;var s=o,l=!1;e.each(t.steps,function(t,n){var a=r.app.prebuildNode(n.type,n.name,n.content_id);i||(n.uuid=null,e.each(n.workflow_outputs,function(e,t){t.uuid=null})),a.init_field_data(n),n.position&&a.element.css({top:n.position.top,left:n.position.left}),a.id=parseInt(n.id)+o,r.nodes[a.id]=a,s=Math.max(s,parseInt(t)+o),l||(a.workflow_outputs.length>0?l=!0:e.each(a.post_job_actions||[],function(e,t){"HideDatasetAction"===t.action_type&&(l=!0)}))}),r.id_counter=s+1,e.each(t.steps,function(t,n){var i=r.nodes[parseInt(t)+o];e.each(n.input_connections,function(t,n){n&&(e.isArray(n)||(n=[n]),e.each(n,function(e,n){var s=r.nodes[parseInt(n.id)+o],l=new a.default;l.connect(s.output_terminals[n.output_name],i.input_terminals[t]),l.redraw()}))}),l&&e.each(i.output_terminals,function(t,n){if(void 0===i.post_job_actions["HideDatasetAction"+n.name]){i.addWorkflowOutput(n.name);e(i.element).find(".callout."+n.name).find("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png"),r.has_changes=!0}})})},check_changes_in_active_form:function(){this.active_form_has_changes&&(this.has_changes=!0,e("#right-content").find("form").submit(),this.active_form_has_changes=!1)},reload_active_node:function(){if(this.active_node){var e=this.active_node;this.clear_active_node(),this.activate_node(e)}},clear_active_node:function(){this.active_node&&(this.active_node.make_inactive(),this.active_node=null),document.activeElement.blur(),this.app.showAttributes()},activate_node:function(e){this.active_node!=e&&(this.check_changes_in_active_form(),this.clear_active_node(),this.app.showForm(e.config_form,e),e.make_active(),this.active_node=e)},node_changed:function(e,t){this.has_changes=!0,this.active_node==e&&t&&(this.check_changes_in_active_form(),this.app.showForm(e.config_form,e)),this.app.showWorkflowParameters()},layout:function(){this.check_changes_in_active_form(),this.has_changes=!0;var t={},n={};e.each(this.nodes,function(e,i){void 0===t[e]&&(t[e]=0),void 0===n[e]&&(n[e]=[])}),e.each(this.nodes,function(i,r){e.each(r.input_terminals,function(i,a){e.each(a.connectors,function(e,i){var a=i.handle1.node;t[r.id]+=1,n[a.id].push(r.id)})})});for(var i=[];;){var r=[];for(var a in t)0===t[a]&&r.push(a);if(0===r.length)break;i.push(r);for(var o in r){var s=r[o];delete t[s];for(var l in n[s])t[n[s][l]]-=1}}if(!t.length){var c=this.nodes,d=80;e.each(i,function(t,n){n.sort(function(t,n){return e(c[t].element).position().top-e(c[n].element).position().top});var i=0,r=30;e.each(n,function(t,n){var a=c[n],o=e(a.element);e(o).css({top:r,left:d}),i=Math.max(i,e(o).width()),r+=e(o).height()+30}),d+=i+80}),e.each(c,function(e,t){t.redraw()})}},bounds_for_all_nodes:function(){var t,n=1/0,i=-1/0,r=1/0,a=-1/0;return e.each(this.nodes,function(o,s){var l=e(s.element);t=l.position(),n=Math.min(n,t.left),i=Math.max(i,t.left+l.width()),r=Math.min(r,t.top),a=Math.max(a,t.top+l.width())}),{xmin:n,xmax:i,ymin:r,ymax:a}},fit_canvas_to_nodes:function(){function t(e,t){return Math.ceil(e/t)*t}function n(e,t){if(e<t||e>3*t){return-(e-(Math.ceil(e%t/t)+1)*t)}return 0}var i=this.bounds_for_all_nodes(),r=this.canvas_container.position(),a=this.canvas_container.parent(),o=n(i.xmin,100),s=n(i.ymin,100);o=Math.max(o,r.left),s=Math.max(s,r.top);var l=r.left-o,c=r.top-s,d=t(i.xmax+100,100)+o,u=t(i.ymax+100,100)+s;d=Math.max(d,-l+a.width()),u=Math.max(u,-c+a.height()),this.canvas_container.css({left:l,top:c,width:d,height:u}),this.canvas_container.children().each(function(){var t=e(this).position();e(this).css("left",t.left+o),e(this).css("top",t.top+s)})}}),t.default=i}).call(t,n(0))},287:function(e,t,n){"use strict";(function(e){function n(e,t,n){this.app=e,this.cv=t,this.cc=this.cv.find("#canvas-container"),this.overview=n,this.oc=n.find("#overview-canvas"),this.ov=n.find("#overview-viewport"),this.init_drag(),this.init_copy_paste()}function i(e){this.panel=e}Object.defineProperty(t,"__esModule",{value:!0}),e.extend(n.prototype,{init_drag:function(){var t=this,n=function(e,n){e=Math.min(e,t.cv.width()/2),e=Math.max(e,-t.cc.width()+t.cv.width()/2),n=Math.min(n,t.cv.height()/2),n=Math.max(n,-t.cc.height()+t.cv.height()/2),t.cc.css({left:e,top:n}),t.cv.css({"background-position-x":e,"background-position-y":n}),t.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new i(this)});var r,a;this.cv.bind("click",function(){document.activeElement.blur()}).bind("dragstart",function(){var n=e(this).offset(),i=t.cc.position();a=i.top-n.top,r=i.left-n.left}).bind("drag",function(e,t){n(t.offsetX+r,t.offsetY+a)}).bind("dragend",function(){t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),this.overview.click(function(e){if(t.overview.hasClass("blockaclick"))t.overview.removeClass("blockaclick");else{var i=t.cc.width(),r=t.cc.height(),a=t.oc.width(),o=t.oc.height(),s=e.pageX-t.oc.offset().left-t.ov.width()/2,l=e.pageY-t.oc.offset().top-t.ov.height()/2;n(-s/a*i,-l/o*r),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}}),this.ov.bind("drag",function(e,i){var r=t.cc.width(),a=t.cc.height(),o=t.oc.width(),s=t.oc.height(),l=i.offsetX-t.overview.offset().left,c=i.offsetY-t.overview.offset().top;n(-l/o*r,-c/s*a)}).bind("dragend",function(){t.overview.addClass("blockaclick"),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),e("#overview-border").bind("drag",function(n,i){var r=e(this).offsetParent(),a=r.offset(),o=Math.max(r.width()-(i.offsetX-a.left),r.height()-(i.offsetY-a.top));e(this).css({width:o,height:o}),t.draw_overview()}),e("#overview-border div").bind("drag",function(){})},init_copy_paste:function(){var e=this;document.addEventListener("copy",function(t){""===window.getSelection().toString()&&(e.app.workflow.active_node&&t.clipboardData.setData("application/json",JSON.stringify({nodeId:e.app.workflow.active_node.id})),t.preventDefault())}),document.addEventListener("paste",function(t){if(document.activeElement&&"textarea"!==document.activeElement.type&&"text"!==document.activeElement.type){var n;try{n=JSON.parse(t.clipboardData.getData("application/json")).nodeId}catch(e){}n&&e.app.workflow.nodes.hasOwnProperty(n)&&e.app.workflow.nodes[n].clone(),t.preventDefault()}})},update_viewport_overlay:function(){var e=this.cc,t=this.cv,n=this.oc,i=this.ov,r=e.width(),a=e.height(),o=n.width(),s=n.height(),l=e.position();i.css({left:-l.left/r*o,top:-l.top/a*s,width:t.width()/r*o-2,height:t.height()/a*s-2})},draw_overview:function(){var t,n,i,r,a=e("#overview-canvas"),o=a.parent().parent().width(),s=a.get(0).getContext("2d"),l=e("#canvas-container").width(),c=e("#canvas-container").height(),d=this.cv.width(),u=this.cv.height();l<d&&c<u?(i=l/d*o,r=(o-i)/2,t=c/u*o,n=(o-t)/2):l<c?(n=0,t=o,i=Math.ceil(t*l/c),r=(o-i)/2):(i=o,r=0,t=Math.ceil(i*c/l),n=(o-t)/2),a.parent().css({left:r,top:n,width:i,height:t}),a.attr("width",i),a.attr("height",t),e.each(this.app.workflow.nodes,function(n,r){s.fillStyle="#D2C099",s.strokeStyle="#D8B365",s.lineWidth=1;var a=e(r.element),o=a.position(),d=o.left/l*i,u=o.top/c*t,h=a.width()/l*i,f=a.height()/c*t;r.errors?(s.fillStyle="#FFCCCC",s.strokeStyle="#AA6666"):void 0!==r.workflow_outputs&&r.workflow_outputs.length>0&&(s.fillStyle="#E8A92D",s.strokeStyle="#E8A92D"),s.fillRect(d,u,h,f),s.strokeRect(d,u,h,f)}),this.update_viewport_overlay()}}),e.extend(i.prototype,{test:function(t,n){var i=this;clearTimeout(this.timeout);var r=t.pageX,a=t.pageY,o=e(this.panel),s=o.position(),l=o.width(),c=o.height(),d=o.parent(),u=d.width(),h=d.height(),f=d.offset(),p=f.left,_=f.top,g=p+d.width(),m=_+d.height(),v=-(l-u/2),y=-(c-h/2),b=u/2,w=h/2,x=!1,k=0;r-5<p?s.left<b&&(k=Math.min(23,b-s.left),o.css("left",s.left+k),x=!0):r+5>g?s.left>v&&(k=Math.min(23,s.left-v),o.css("left",s.left-k),x=!0):a-5<_?s.top<w&&(k=Math.min(23,w-s.top),o.css("top",s.top+k),x=!0):a+5>m&&s.top>y&&(k=Math.min(23,s.top-v),o.css("top",s.top-k+"px"),x=!0),x&&(n(),this.timeout=setTimeout(function(){i.test(t,n)},50))},stop:function(){clearTimeout(this.timeout)}}),t.default=n}).call(t,n(0))},288:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(3),s=a(o),l=n(289),c=a(l),d=e.Model.extend({initialize:function(e,t){this.app=e,this.element=t.element,this.input_terminals={},this.output_terminals={},this.errors={},this.workflow_outputs=[]},getWorkflowOutput:function(e){return i.findWhere(this.workflow_outputs,{output_name:e})},isWorkflowOutput:function(e){return void 0!==this.getWorkflowOutput(e)},removeWorkflowOutput:function(e){for(;this.isWorkflowOutput(e);)this.workflow_outputs.splice(this.getWorkflowOutput(e),1)},addWorkflowOutput:function(e,t){if(!this.isWorkflowOutput(e)){var n={output_name:e};return t&&(n.label=t),this.workflow_outputs.push(n),!0}return!1},labelWorkflowOutput:function(e,t){var n=!1,i=null;if(this.isWorkflowOutput(e)){var r=this.getWorkflowOutput(e);i=r.label,r.label=t,n=i!=t}else n=this.addWorkflowOutput(e,t);return n&&(this.app.workflow.updateOutputLabel(i,t),this.markChanged(),this.nodeView.redrawWorkflowOutputs()),n},connectedOutputTerminals:function(){return this._connectedTerminals(this.output_terminals)},_connectedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.connectors.length>0&&t.push(n)}),t},hasConnectedOutputTerminals:function(){var e=this.output_terminals;for(var t in e)if(e[t].connectors.length>0)return!0;return!1},connectedMappedInputTerminals:function(){return this._connectedMappedTerminals(this.input_terminals)},hasConnectedMappedInputTerminals:function(){var e=this.input_terminals;for(var t in e){var n=e[t];if(n.connectors.length>0&&n.isMappedOver())return!0}return!1},_connectedMappedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.mapOver().isCollection&&n.connectors.length>0&&t.push(n)}),t},mappedInputTerminals:function(){return this._mappedTerminals(this.input_terminals)},_mappedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.mapOver().isCollection&&t.push(n)}),t},hasMappedOverInputTerminals:function(){var e=!1;return i.each(this.input_terminals,function(t){t.mapOver().isCollection&&(e=!0)}),e},redraw:function(){r.each(this.input_terminals,function(e,t){t.redraw()}),r.each(this.output_terminals,function(e,t){t.redraw()})},clone:function(){var e=this,t={name:this.name,label:this.label,annotation:this.annotation,post_job_actions:this.post_job_actions},n=this.app.workflow.create_node(this.type,this.name,this.content_id);s.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{type:this.type,tool_id:this.content_id,inputs:this.tool_state},success:function(i){var r=Object.assign({},i,t);n.init_field_data(r),n.update_field_data(r),e.app.workflow.activate_node(n)}})},destroy:function(){r.each(this.input_terminals,function(e,t){t.destroy()}),r.each(this.output_terminals,function(e,t){t.destroy()}),this.app.workflow.remove_node(this),r(this.element).remove()},make_active:function(){r(this.element).addClass("toolForm-active")},make_inactive:function(){var e=this.element.get(0);!function(t){t.removeChild(e),t.appendChild(e)}(e.parentNode),r(e).removeClass("toolForm-active")},init_field_data:function(e){e.type&&(this.type=e.type),this.name=e.name,this.config_form=e.config_form,this.tool_version=this.config_form&&this.config_form.version,this.tool_state=e.tool_state,this.errors=e.errors,this.tooltip=e.tooltip?e.tooltip:"",this.annotation=e.annotation,this.post_job_actions=e.post_job_actions?e.post_job_actions:{},this.label=e.label,this.uuid=e.uuid,this.workflow_outputs=e.workflow_outputs?e.workflow_outputs:[];var t=this,n=new c.default({el:this.element[0],node:t});t.nodeView=n,r.each(e.data_inputs,function(e,t){n.addDataInput(t)}),e.data_inputs.length>0&&e.data_outputs.length>0&&n.addRule(),r.each(e.data_outputs,function(e,t){n.addDataOutput(t)}),n.render(),this.app.workflow.node_changed(this,!0)},update_field_data:function(e){var t=this,n=t.nodeView,a=[];if(r.each(n.outputViews,function(t,n){var r=n.output.name,o=e.data_outputs,s=!1;i.each(o,function(e){e.name==r&&(s=!0)}),!1===s&&a.push(r)}),i.each(a,function(e){i.each(n.outputViews[e].terminalElement.terminal.connectors,function(e){e&&e.destroy()}),n.outputViews[e].remove(),delete n.outputViews[e],delete t.output_terminals[e]}),r.each(t.workflow_outputs,function(e,n){n&&!t.output_terminals[n.output_name]&&t.workflow_outputs.splice(e,1)}),r.each(e.data_outputs,function(e,i){n.outputViews[i.name]?(t.output_terminals[i.name].datatypes=i.extensions,t.output_terminals[i.name].destroyInvalidConnections()):n.addDataOutput(i)}),this.tool_state=e.tool_state,this.config_form=e.config_form,this.tool_version=this.config_form&&this.config_form.version,this.errors=e.errors,this.annotation=e.annotation,this.label=e.label,"post_job_actions"in e){var o=e.post_job_actions;this.post_job_actions=o||{}}t.nodeView.renderToolErrors();var s=n.$("div.inputs"),l=n.newInputsDiv(),c={};i.each(e.data_inputs,function(e){var n=t.nodeView.addDataInput(e,l);c[e.name]=n}),i.each(i.difference(i.values(n.terminalViews),i.values(c)),function(e){e.el.terminal.destroy()}),n.terminalViews=c,t.nodeView.render(),1==e.data_outputs.length&&"collection_type"in e.data_outputs[0]&&n.updateDataOutput(e.data_outputs[0]),s.replaceWith(l),"workflow_outputs"in e&&(this.workflow_outputs=e.workflow_outputs?e.workflow_outputs:[]),this.markChanged(),this.redraw()},error:function(e){var t=r(this.element).find(".toolFormBody");t.find("div").remove();var n="<div style='color: red; text-style: italic;'>"+e+"</div>";this.config_form=n,t.html(n),this.app.workflow.node_changed(this)},markChanged:function(){this.app.workflow.node_changed(this)}});t.default=d}).call(t,n(2),n(1),n(0))},289:function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(1),o=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}(a),s=n(290),l=r(s),c=n(292),d=r(c);t.default=e.View.extend({initialize:function(e){this.node=e.node,this.output_width=Math.max(150,this.$el.width()),this.tool_body=this.$el.find(".toolFormBody"),this.tool_body.find("div").remove(),this.newInputsDiv().appendTo(this.tool_body),this.terminalViews={},this.outputViews={}},render:function(){this.renderToolLabel(),this.renderToolErrors(),this.$el.css("width",Math.min(250,Math.max(this.$el.width(),this.output_width)))},renderToolLabel:function(){this.$(".nodeTitle").text(this.node.label||this.node.name)},renderToolErrors:function(){this.node.errors?this.$el.addClass("tool-node-error"):this.$el.removeClass("tool-node-error")},newInputsDiv:function(){return i("<div/>").addClass("inputs")},updateMaxWidth:function(e){this.output_width=Math.max(this.output_width,e)},addRule:function(){this.tool_body.append(i("<div/>").addClass("rule"))},addDataInput:function(e,t){var n=!0;t||(t=this.$(".inputs"),n=!1);var i=this.terminalViews[e.name],r="dataset_collection"==e.input_type?l.default.InputCollectionTerminalView:l.default.InputTerminalView;if(!i||i instanceof r||(i.el.terminal.destroy(),i=null),i){var a=i.el.terminal;a.update(e),a.destroyInvalidConnections()}else i=new r({node:this.node,input:e});this.terminalViews[e.name]=i;var o=i.el,s=new d.default.DataInputView({terminalElement:o,input:e,nodeView:this,skipResize:n}),c=s.$el;return t.append(c.prepend(i.terminalElements())),i},addDataOutput:function(e){var t=e.collection?l.default.OutputCollectionTerminalView:l.default.OutputTerminalView,n=new t({node:this.node,output:e}),i=new d.default.DataOutputView({output:e,terminalElement:n.el,nodeView:this});this.outputViews[e.name]=i,this.tool_body.append(i.$el.append(n.terminalElements()))},redrawWorkflowOutputs:function(){o.each(this.outputViews,function(e){e.redrawWorkflowOutput()})},updateDataOutput:function(e){this.node.output_terminals[e.name].update(e)}})}).call(t,n(2),n(0))},290:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(291),s=a(o),l=n(125),c=a(l);window.workflow_globals=window.workflow_globals||{};var d=e.View.extend({tagName:"div",className:"fa-icon-button fa fa-folder-o",initialize:function(e){this.$el.tooltip({delay:500,title:"Run tool in parallel over 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t=e.node,n=e.input,i=n.name,r=this.terminalForInput(n);r.multiple||this.setupMappingView(r),this.el.terminal=r,r.node=t,r.name=i,t.input_terminals[i]=r},events:{dropinit:"onDropInit",dropstart:"onDropStart",dropend:"onDropEnd",drop:"onDrop",hover:"onHover"},onDropInit:function(e,t){var n=this.el.terminal;return r(t.drag).hasClass("output-terminal")&&n.canAccept(t.drag.terminal)},onDropStart:function(e,t){t.proxy.terminal&&(t.proxy.terminal.connectors[0].inner_color="#BBFFBB")},onDropEnd:function(e,t){t.proxy.terminal&&(t.proxy.terminal.connectors[0].inner_color="#FFFFFF")},onDrop:function(e,t){var n=this.el.terminal;new c.default(t.drag.terminal,n).redraw()},onHover:function(){var e=this.el,t=e.terminal;if(t.connectors.length>0){var n=r("<div class='callout'></div>").css({display:"none"}).appendTo("body").append(r("<div class='button'></div>").append(r("<div/>").addClass("fa-icon-button fa fa-times").click(function(){r.each(t.connectors,function(e,t){t&&t.destroy()}),n.remove()}))).bind("mouseleave",function(){r(this).remove()});n.css({top:r(e).offset().top-2,left:r(e).offset().left-n.width(),"padding-right":r(e).width()}).show()}}}),p=f.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:u,terminalForInput:function(e){return new s.default.InputTerminal({element:this.el,input:e})}}),_=f.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:u,terminalForInput:function(e){return new s.default.InputCollectionTerminal({element:this.el,input:e})}}),g=h.extend({className:"terminal output-terminal",initialize:function(e){var t=e.node,n=e.output,i=n.name,r=this.terminalForOutput(n);this.setupMappingView(r),this.el.terminal=r,r.node=t,r.name=i,t.output_terminals[i]=r},events:{drag:"onDrag",dragstart:"onDragStart",dragend:"onDragEnd"},onDrag:function(e,t){var n=function(){var e=r(t.proxy).offsetParent().offset(),n=t.offsetX-e.left,i=t.offsetY-e.top;r(t.proxy).css({left:n,top:i}),t.proxy.terminal.redraw(),window.workflow_globals.canvas_manager.update_viewport_overlay()};n(),r("#canvas-container").get(0).scroll_panel.test(e,n)},onDragStart:function(e,t){r(t.available).addClass("input-terminal-active"),window.workflow_globals.workflow.check_changes_in_active_form();var n=r('<div class="drag-terminal" style="position: absolute;"></div>').appendTo("#canvas-container").get(0);n.terminal=new s.default.OutputTerminal({element:n});var i=new c.default;return i.dragging=!0,i.connect(this.el.terminal,n.terminal),n},onDragEnd:function(e,t){var n=t.proxy.terminal.connectors[0];n&&n.destroy(),r(t.proxy).remove(),r(t.available).removeClass("input-terminal-active"),r("#canvas-container").get(0).scroll_panel.stop()}}),m=g.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:d,terminalForOutput:function(e){var t=e.extensions;return new s.default.OutputTerminal({element:this.el,datatypes:t})}}),v=g.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:d,terminalForOutput:function(e){var t=e.collection_type,n=e.collection_type_source;return new s.default.OutputCollectionTerminal({element:this.el,collection_type:t,collection_type_source:n,datatypes:e.extensions})}});t.default={InputTerminalView:p,OutputTerminalView:m,InputCollectionTerminalView:_,OutputCollectionTerminalView:v}}).call(t,n(2),n(1),n(0))},291:function(e,t,n){"use strict";(function(e,n,i){function r(e){this.collectionType=e,this.isCollection=!0,this.rank=e.split(":").length}Object.defineProperty(t,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var a={isCollection:!1,canMatch:function(e){return!1},canMapOver:function(e){return!1},toString:function(){return"NullCollectionType[]"},append:function(e){return e},equal:function(e){return e===this}},o={isCollection:!0,canMatch:function(e){return a!==e},canMapOver:function(e){return!1},toString:function(){return"AnyCollectionType[]"},append:function(e){throw"Cannot append to ANY_COLLECTION_TYPE_DESCRIPTION"},equal:function(e){return e===this}};e.extend(r.prototype,{append:function(e){return e===a?this:e===o?otherCollectionType:new r(this.collectionType+":"+e.collectionType)},canMatch:function(e){return e!==a&&(e===o||e.collectionType==this.collectionType)},canMapOver:function(e){if(e===a)return!1;if(e===o)return!1;if(this.rank<=e.rank)return!1;var t=e.collectionType;return this._endsWith(this.collectionType,t)},effectiveMapOver:function(e){var t=e.collectionType;return new r(this.collectionType.substring(0,this.collectionType.length-t.length-1))},equal:function(e){return e.collectionType==this.collectionType},toString:function(){return"CollectionType["+this.collectionType+"]"},_endsWith:function(e,t){return-1!==e.indexOf(t,e.length-t.length)}});var s=n.Model.extend({initialize:function(e){this.mapOver=e.mapOver||a,this.terminal=e.terminal,this.terminal.terminalMapping=this},disableMapOver:function(){this.setMapOver(a)},setMapOver:function(e){this.mapOver=e,this.trigger("change")}}),l=n.Model.extend({initialize:function(e){this.element=e.element,this.connectors=[]},connect:function(e){this.connectors.push(e),this.node&&this.node.markChanged()},disconnect:function(t){this.connectors.splice(e.inArray(t,this.connectors),1),this.node&&(this.node.markChanged(),this.resetMappingIfNeeded())},redraw:function(){e.each(this.connectors,function(e,t){t.redraw()})},destroy:function(){e.each(this.connectors.slice(),function(e,t){t.destroy()})},destroyInvalidConnections:function(){i.each(this.connectors,function(e){e&&e.destroyIfInvalid()})},setMapOver:function(e){this.multiple||this.mapOver().equal(e)||(this.terminalMapping.setMapOver(e),i.each(this.node.output_terminals,function(t){t.setMapOver(e)}))},mapOver:function(){return this.terminalMapping?this.terminalMapping.mapOver:a},isMappedOver:function(){return this.terminalMapping&&this.terminalMapping.mapOver.isCollection},resetMapping:function(){this.terminalMapping.disableMapOver()},resetMappingIfNeeded:function(){}}),c=l.extend({initialize:function(e){l.prototype.initialize.call(this,e),this.datatypes=e.datatypes},resetMappingIfNeeded:function(){this.node.hasConnectedOutputTerminals()||this.node.hasConnectedMappedInputTerminals()||i.each(this.node.mappedInputTerminals(),function(e){e.resetMappingIfNeeded()}),!this.node.hasMappedOverInputTerminals()&&this.resetMapping()},resetMapping:function(){this.terminalMapping.disableMapOver(),i.each(this.connectors,function(e){var t=e.handle2;t&&(t.resetMappingIfNeeded(),e.destroyIfInvalid())})}}),d=l.extend({initialize:function(e){l.prototype.initialize.call(this,e),this.update(e.input)},canAccept:function(e){return!this._inputFilled()&&this.attachable(e)},resetMappingIfNeeded:function(){this.mapOver().isCollection&&((this.node.hasConnectedMappedInputTerminals()||!this.node.hasConnectedOutputTerminals())&&this.resetMapping())},resetMapping:function(){this.terminalMapping.disableMapOver(),this.node.hasMappedOverInputTerminals()||i.each(this.node.output_terminals,function(e){e.resetMapping()})},connected:function(){return 0!==this.connectors.length},_inputFilled:function(){var e;return this.connected()?this.multiple?this._collectionAttached()?inputsFilled=!0:e=!1:e=!0:e=!1,e},_collectionAttached:function(){if(this.connected()){var e=this.connectors[0].handle1;return!!e&&!!(e.isCollection||e.isMappedOver()||e.datatypes.indexOf("input_collection")>0)}return!1},_mappingConstraints:function(){if(!this.node)return[];var e=this.mapOver();if(e.isCollection)return[e];var t=[];return this.node.hasConnectedOutputTerminals()?t.push(i.first(i.values(this.node.output_terminals)).mapOver()):i.each(this.node.connectedMappedInputTerminals(),function(e){t.push(e.mapOver())}),t},_producesAcceptableDatatype:function(e){for(var t in this.datatypes){var n=this.datatypes[t];if("input"==n)return!0;var i=new Array;if(i=i.concat(e.datatypes),e.node.post_job_actions)for(var r in e.node.post_job_actions){var a=e.node.post_job_actions[r];"ChangeDatatypeAction"!=a.action_type||""!=a.output_name&&a.output_name!=e.name||!a.action_arguments||i.push(a.action_arguments.newtype)}for(var o in i){var s=i[o];if("input"==s||"_sniff_"==s||"input_collection"==s||window.workflow_globals.app.isSubType(i[o],n))return!0}}return!1},_otherCollectionType:function(e){var t=a;e.isCollection&&(t=e.collectionType);var n=e.mapOver();return n.isCollection&&(t=n.append(t)),t}}),u=d.extend({update:function(e){this.datatypes=e.extensions,this.multiple=e.multiple,this.collection=!1},connect:function(e){d.prototype.connect.call(this,e);var t=e.handle1;if(t){var n=this._otherCollectionType(t);n.isCollection&&this.setMapOver(n)}},attachable:function(e){var t=this._otherCollectionType(e),n=this.mapOver();if(t.isCollection){if(this.multiple)return!(this.connected()&&!this._collectionAttached())&&(1==t.rank&&this._producesAcceptableDatatype(e));if(n.isCollection&&n.canMatch(t))return this._producesAcceptableDatatype(e);return!!this._mappingConstraints().every(i.bind(t.canMatch,t))&&this._producesAcceptableDatatype(e)}return!n.isCollection&&this._producesAcceptableDatatype(e)}}),h=d.extend({update:function(e){this.multiple=!1,this.collection=!0,this.datatypes=e.extensions;var t=[];e.collection_types?i.each(e.collection_types,function(e){t.push(new r(e))}):t.push(o),this.collectionTypes=t},connect:function(e){d.prototype.connect.call(this,e);var t=e.handle1;if(t){var n=this._effectiveMapOver(t);this.setMapOver(n)}},_effectiveMapOver:function(e){var t=this.collectionTypes,n=this._otherCollectionType(e);if(!i.some(t,function(e){return e.canMatch(n)}))for(var r in t){var o=t[r];if(n.canMapOver(o)){var s=n.effectiveMapOver(o);if(s!=a)return s}}return a},_effectiveCollectionTypes:function(){var e=this.mapOver();return i.map(this.collectionTypes,function(t){return e.append(t)})},attachable:function(e){var t=this._otherCollectionType(e);if(t.isCollection){var n=this._effectiveCollectionTypes(),r=this.mapOver();if(i.some(n,function(e){return e.canMatch(t)}))return this._producesAcceptableDatatype(e);if(r.isCollection)return!1;if(i.some(this.collectionTypes,function(e){return t.canMapOver(e)})){var a=this._effectiveMapOver(e);if(!a.isCollection)return!1;if(this._mappingConstraints().every(a.canMatch))return this._producesAcceptableDatatype(e)}}return!1}}),f=l.extend({initialize:function(e){if(l.prototype.initialize.call(this,e),this.datatypes=e.datatypes,e.collection_type)this.collectionType=new r(e.collection_type);else{e.collection_type_source||console.log("Warning: No collection type or collection type source defined."),this.collectionType=o}this.isCollection=!0},update:function(e){var t;if(e.collection_type)t=new r(e.collection_type);else{e.collection_type_source||console.log("Warning: No collection type or collection type source defined."),t=o}t.collectionType!=this.collectionType.collectionType&&i.each(this.connectors,function(e){e.destroy()}),this.collectionType=t}});t.default={InputTerminal:u,OutputTerminal:c,InputCollectionTerminal:h,OutputCollectionTerminal:f,TerminalMapping:s,CollectionTypeDescription:r,NULL_COLLECTION_TYPE_DESCRIPTION:a,ANY_COLLECTION_TYPE_DESCRIPTION:o}}).call(t,n(0),n(2),n(1))},292:function(e,t,n){"use strict";(function(e,n){Object.defineProperty(t,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var i=e.View.extend({className:"form-row dataRow input-data-row",initialize:function(e){this.input=e.input,this.nodeView=e.nodeView,this.terminalElement=e.terminalElement,this.$el.attr("name",this.input.name).html(this.input.label),e.skipResize||(this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),n("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()),this.$el.css({position:"",left:"",top:"",display:""}),this.$el.remove())}}),r=e.View.extend({className:"form-row dataRow",initialize:function(e){this.output=e.output,this.terminalElement=e.terminalElement,this.nodeView=e.nodeView;var t=this.output,i=t.name,r=this.nodeView.node;if(t.extensions.indexOf("input")>=0||t.extensions.indexOf("input_collection")>=0||(i=i+" ("+t.extensions.join(", ")+")"),this.$el.html(i),this.calloutView=null,["tool","subworkflow"].indexOf(r.type)>=0){var o=new a({label:i,output:t,node:r});this.calloutView=o,this.$el.append(o.el),this.$el.hover(function(){o.hoverImage()},function(){o.resetImage()})}this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),n("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()+17),this.$el.css({position:"",left:"",top:"",display:""}).detach()},redrawWorkflowOutput:function(){this.calloutView&&this.calloutView.resetImage()}}),a=e.View.extend({tagName:"div",initialize:function(e){this.label=e.label,this.node=e.node,this.output=e.output;var t=this,i=this.node;this.$el.attr("class","callout "+this.label).css({display:"none"}).append(n("<div class='buttons'></div>").append(n("<img/>").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png").click(function(){var e=t.output.name;i.isWorkflowOutput(e)?(i.removeWorkflowOutput(e),t.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png")):(i.addWorkflowOutput(e),t.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png")),window.workflow_globals.workflow.has_changes=!0,window.workflow_globals.canvas_manager.draw_overview()}))).tooltip({delay:500,title:"Mark dataset as a workflow output. All unmarked datasets will be hidden."}),this.$el.css({top:"50%",margin:"-8px 0px 0px 0px",right:8}),this.$el.show(),this.resetImage()},resetImage:function(){this.node.isWorkflowOutput(this.output.name)?this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png"):this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png")},hoverImage:function(){this.$("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-yellow.png")}});t.default={DataInputView:i,DataOutputView:r}}).call(t,n(2),n(0))},293:function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}function a(e){var t=e.model.attributes,n=t.workflow,i=t.node;t.inputs.unshift({type:"text",name:"__annotation",label:"Annotation",fixed:!0,value:i.annotation,area:!0,help:"Add an annotation or notes to this step. Annotations are available when a workflow is viewed."}),t.inputs.unshift({type:"text",name:"__label",label:"Label",value:i.label,help:"Add a step label.",fixed:!0,onchange:function(t){var r=!1;for(var a in n.nodes){var o=n.nodes[a];if(o.label&&o.label==t&&o.id!=i.id){r=!0;break}}var s=e.data.match("__label");e.element_list[s].model.set("error_text",r&&"Duplicate label. Please fix this before saving the workflow."),e.trigger("change")}})}function o(e,t,n,i){var r=i.node.post_job_actions;t=t||[],t.push(e);for(var a in e.inputs){var s=e.inputs[a];if(s.action){if(s.name="pja__"+n+"__"+s.action,s.pja_arg&&(s.name+="__"+s.pja_arg),s.payload)for(var l in s.payload)s.payload[s.name+"__"+l]=s.payload[l],delete s.payload[l];var c=r[s.action+n];if(c){for(var d in t)t[d].expanded=!0;s.pja_arg?s.value=c.action_arguments&&c.action_arguments[s.pja_arg]||s.value:s.value="true"}}s.inputs&&o(s,t.slice(0),n,i)}}function s(e,t){var n=[],i=[],r=t.datatypes,a=t.node,s=t.workflow;for(var l in r)n.push({0:r[l],1:r[l]});for(l in a.input_terminals)i.push(a.input_terminals[l].name);n.sort(function(e,t){return e.label>t.label?1:e.label<t.label?-1:0}),n.unshift({0:"Sequences",1:"Sequences"}),n.unshift({0:"Roadmaps",1:"Roadmaps"}),n.unshift({0:"Leave unchanged",1:"__empty__"});var c,d={title:"Configure Output: '"+e+"'",type:"section",flat:!0,inputs:[{label:"Label",type:"text",value:(c=a.getWorkflowOutput(e))&&c.label||"",help:"This will provide a short name to describe the output - this must be unique across workflows.",onchange:function(t){s.attemptUpdateOutputLabel(a,e,t)}},{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://galaxyproject.org/learn/advanced-workflow/variables/">here</a> for more information. Valid inputs are: <strong>'+i.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:n,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Add Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{action:"RemoveTagDatasetAction",pja_arg:"tags",label:"Remove Tags",type:"text",value:"",ignore:"",help:"This action will remove tags for the dataset."},{title:"Assign columns",type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};return o(d,[],e,t),d}function l(e){var t=e.model.attributes,n=t.inputs,i=t.node,r=i.post_job_actions,a=i.output_terminals&&Object.keys(i.output_terminals)[0];if(a){n.push({name:"pja__"+a+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(r["EmailAction"+a])),ignore:"false",help:"An email notification will be sent when the job has completed.",payload:{host:window.location.host}}),n.push({name:"pja__"+a+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(r["DeleteIntermediatesAction"+a])),ignore:"false",help:"Upon completion of this step, delete non-starred outputs from completed workflow steps if they are no longer required as inputs."});for(var o in i.output_terminals)n.push(s(o,t))}}Object.defineProperty(t,"__esModule",{value:!0});var c=n(3),d=r(c),u=n(11),h=r(u),f=n(45),p=r(f),_=e.View.extend({initialize:function(e){var t=this,n=e.node;this.form=new h.default(d.default.merge(e,{onchange:function(){d.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{id:n.id,type:n.type,content_id:n.content_id,inputs:t.form.data.create()},success:function(e){n.update_field_data(e)}})}})),a(this.form),this.form.render()}}),g=e.View.extend({initialize:function(e){var t=this,n=e.node;this.form=new p.default(d.default.merge(e,{text_enable:"Set in Advance",text_disable:"Set at Runtime",narrow:!0,initial_errors:!0,cls:"ui-portlet-narrow",initialmodel:function(e,n){t._customize(n),e.resolve()},buildmodel:function(e,t){t.model.get("postchange")(e,t)},postchange:function(e,r){var a=r.model.attributes,o={tool_id:a.id,tool_version:a.version,type:"tool",inputs:i.extend(!0,{},r.data.create())};Galaxy.emit.debug("tool-form-workflow::postchange()","Sending current state.",o),d.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:o,success:function(i){r.model.set(i.config_form),t._customize(r),r.update(i.config_form),r.errors(i.config_form),n.update_field_data(i),Galaxy.emit.debug("tool-form-workflow::postchange()","Received new model.",i),e.resolve()},error:function(t){Galaxy.emit.debug("tool-form-workflow::postchange()","Refresh request failed.",t),e.reject()}})}}))},_customize:function(e){var t=e.model.attributes;d.default.deepeach(t.inputs,function(e){e.type&&(-1!=["data","data_collection"].indexOf(e.type)?(e.type="hidden",e.info="Data input '"+e.name+"' ("+d.default.textify(e.extensions)+")",e.value={__class__:"RuntimeValue"}):e.fixed||(e.collapsible_value={__class__:"RuntimeValue"},e.is_workflow=e.options&&0===e.options.length||-1!=["integer","float"].indexOf(e.type)))}),d.default.deepeach(t.inputs,function(e){"conditional"===e.type&&(e.test_param.collapsible_value=void 0)}),l(e),a(e)}});t.default={Default:_,Tool:g}}).call(t,n(2),n(0))},294:function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}function a(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}Object.defineProperty(t,"__esModule",{value:!0});var o=n(1),s=a(o),l=n(295),c=a(l),d=n(27),u=r(d),h=n(3),f=r(h),p=n(37),_=r(p),g=n(41),m=r(g);n(40);var v=e.Model.extend({is_visible:function(e,t){var n=e.getBoundingClientRect(),r=i("svg")[0].getBoundingClientRect();return!(n.right<0||n.left>r.right||n.bottom<0||n.top>r.bottom)}}),y={drawTicks:function(e,t,n,i,r){var a=e.append("g").selectAll("g").data(t).enter().append("g").selectAll("g").data(n).enter().append("g").attr("class","tick").attr("transform",function(e){return"rotate("+(180*e.angle/Math.PI-90)+")translate("+e.radius+",0)"}),o=[],s=[],l=function(e){return e.angle>Math.PI?"end":null};return r?(o=[0,0,0,-4],s=[4,0,"",".35em"],l=null):(o=[1,0,4,0],s=[0,4,".35em",""]),a.append("line").attr("x1",o[0]).attr("y1",o[1]).attr("x2",o[2]).attr("y1",o[3]).style("stroke","#000"),a.append("text").attr("x",s[0]).attr("y",s[1]).attr("dx",s[2]).attr("dy",s[3]).attr("text-anchor",l).attr("transform",i).text(function(e){return e.label})},formatNum:function(e,t){if(void 0===t&&(t=2),null===e)return null;var n=null;if(Math.abs(e)<1)n=e.toPrecision(t);else{var i=Math.round(e.toPrecision(t));e=Math.abs(e),e<1e3?n=i:e<1e6?n=Math.round((i/1e3).toPrecision(3)).toFixed(0)+"K":e<1e9&&(n=Math.round((i/1e6).toPrecision(3)).toFixed(0)+"M")}return n}},b=e.Model.extend({}),w=e.View.extend({className:"circster",initialize:function(e){this.genome=e.genome,this.label_arc_height=50,this.scale=1,this.circular_views=null,this.chords_views=null,this.model.get("drawables").on("add",this.add_track,this),this.model.get("drawables").on("remove",this.remove_track,this);var t=this.model.get("config");t.get("arc_dataset_height").on("change:value",this.update_track_bounds,this),t.get("track_gap").on("change:value",this.update_track_bounds,this)},get_circular_tracks:function(){return this.model.get("drawables").filter(function(e){return"DiagonalHeatmapTrack"!==e.get("track_type")})},get_chord_tracks:function(){return this.model.get("drawables").filter(function(e){return"DiagonalHeatmapTrack"===e.get("track_type")})},get_tracks_bounds:function(){var e=this.get_circular_tracks(),t=this.model.get("config").get_value("arc_dataset_height"),n=this.model.get("config").get_value("track_gap"),i=Math.min(this.$el.width(),this.$el.height())-20,r=i/2-e.length*(t+n)+n-this.label_arc_height,a=c.range(r,i/2,t+n);return s.map(a,function(e){return[e,e+t]})},render:function(){var e=this,t=e.$el.width(),n=e.$el.height(),i=this.get_circular_tracks(),r=this.get_chord_tracks(),a=e.model.get("config").get_value("total_gap"),o=this.get_tracks_bounds(),s=c.select(e.$el[0]).append("svg").attr("width",t).attr("height",n).attr("pointer-events","all").append("svg:g").call(c.behavior.zoom().on("zoom",function(){var t=c.event.scale;s.attr("transform","translate("+c.event.translate+") scale("+t+")"),e.scale!==t&&(e.zoom_drag_timeout&&clearTimeout(e.zoom_drag_timeout),e.zoom_drag_timeout=setTimeout(function(){},400))})).attr("transform","translate("+t/2+","+n/2+")").append("svg:g").attr("class","tracks");this.circular_views=i.map(function(t,n){var i=new M({el:s.append("g")[0],track:t,radius_bounds:o[n],genome:e.genome,total_gap:a});return i.render(),i}),this.chords_views=r.map(function(t){var n=new C({el:s.append("g")[0],track:t,radius_bounds:o[0],genome:e.genome,total_gap:a});return n.render(),n});var l=this.circular_views[this.circular_views.length-1].radius_bounds[1],d=[l,l+this.label_arc_height];this.label_track_view=new k({el:s.append("g")[0],track:new b,radius_bounds:d,genome:e.genome,total_gap:a}),this.label_track_view.render()},add_track:function(e){var t=this.model.get("config").get_value("total_gap");if("DiagonalHeatmapTrack"===e.get("track_type")){var n=this.circular_views[0].radius_bounds,i=new C({el:c.select("g.tracks").append("g")[0],track:e,radius_bounds:n,genome:this.genome,total_gap:t});i.render(),this.chords_views.push(i)}else{var r=this.get_tracks_bounds();s.each(this.circular_views,function(e,t){e.update_radius_bounds(r[t])}),s.each(this.chords_views,function(e){e.update_radius_bounds(r[0])});var a=this.circular_views.length,o=new M({el:c.select("g.tracks").append("g")[0],track:e,radius_bounds:r[a],genome:this.genome,total_gap:t});o.render(),this.circular_views.push(o)}},remove_track:function(e,t,n){var i=this.circular_views[n.index];this.circular_views.splice(n.index,1),i.$el.remove();var r=this.get_tracks_bounds();s.each(this.circular_views,function(e,t){e.update_radius_bounds(r[t])})},update_track_bounds:function(){var e=this.get_tracks_bounds();s.each(this.circular_views,function(t,n){t.update_radius_bounds(e[n])}),s.each(this.chords_views,function(t){t.update_radius_bounds(e[0])})}}),x=e.View.extend({tagName:"g",initialize:function(e){this.bg_stroke="#ddd",this.loading_bg_fill="#ffc",this.bg_fill="#ddd",this.total_gap=e.total_gap,this.track=e.track,this.radius_bounds=e.radius_bounds,this.genome=e.genome,this.chroms_layout=this._chroms_layout(),this.data_bounds=[],this.scale=1,this.parent_elt=c.select(this.$el[0])},get_fill_color:function(){var e=this.track.get("config").get_value("block_color");return e||(e=this.track.get("config").get_value("color")),e},render:function(){var e=this.parent_elt,t=this.chroms_layout,n=c.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]),r=e.selectAll("g").data(t).enter().append("svg:g"),a=r.append("path").attr("d",n).attr("class","chrom-background").style("stroke",this.bg_stroke).style("fill",this.loading_bg_fill);a.append("title").text(function(e){return e.data.chrom});var o=this,s=o.track.get("data_manager"),l=!s||s.data_is_ready();i.when(l).then(function(){i.when(o._render_data(e)).then(function(){a.style("fill",o.bg_fill),o.render_labels()})})},render_labels:function(){},update_radius_bounds:function(e){this.radius_bounds=e;var t=c.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]);this.parent_elt.selectAll("g>path.chrom-background").transition().duration(1e3).attr("d",t),this._transition_chrom_data(),this._transition_labels()},update_scale:function(e){var t=this.scale;if(this.scale=e,!(e<=t)){var n=this,r=new v;return this.parent_elt.selectAll("path.chrom-data").filter(function(e,t){return r.is_visible(this)}).each(function(t,r){var a,o=c.select(this),l=o.attr("chrom"),d=n.genome.get_chrom_region(l),u=n.track.get("data_manager");u.can_get_more_detailed_data(d)&&(a=n.track.get("data_manager").get_more_detailed_data(d,"Coverage",0,e),i.when(a).then(function(e){o.remove(),n._update_data_bounds();var t=s.find(n.chroms_layout,function(e){return e.data.chrom===l}),i=n.get_fill_color();n._render_chrom_data(n.parent_elt,t,e).style("stroke",i).style("fill",i)}))}),n}},_transition_chrom_data:function(){var e=this.track,t=this.chroms_layout,n=this.parent_elt.selectAll("g>path.chrom-data");if(n[0].length>0){var r=this;i.when(e.get("data_manager").get_genome_wide_data(this.genome)).then(function(i){var a=s.reject(s.map(i,function(e,n){var i=null,a=r._get_path_function(t[n],e);return a&&(i=a(e.data)),i}),function(e){return null===e}),o=e.get("config").get_value("color");n.each(function(e,t){c.select(this).transition().duration(1e3).style("stroke",o).style("fill",o).attr("d",a[t])})})}},_transition_labels:function(){},_update_data_bounds:function(e){this.data_bounds;this.data_bounds=e||this.get_data_bounds(this.track.get("data_manager").get_genome_wide_data(this.genome)),this._transition_chrom_data()},_render_data:function(e){var t=this,n=this.chroms_layout,r=this.track,a=i.Deferred();return i.when(r.get("data_manager").get_genome_wide_data(this.genome)).then(function(i){t.data_bounds=t.get_data_bounds(i),r.get("config").set_value("min_value",t.data_bounds[0],{silent:!0}),r.get("config").set_value("max_value",t.data_bounds[1],{silent:!0});var o=s.zip(n,i);s.each(o,function(n){var i=n[0],r=n[1];return t._render_chrom_data(e,i,r)});var l=t.get_fill_color();t.parent_elt.selectAll("path.chrom-data").style("stroke",l).style("fill",l),a.resolve(e)}),a},_render_chrom_data:function(e,t,n){},_get_path_function:function(e,t){},_chroms_layout:function(){var e=this.genome.get_chroms_info(),t=c.layout.pie().value(function(e){return e.len}).sort(null),n=t(e),i=2*Math.PI*this.total_gap/e.length;return s.map(n,function(e,t){var n=e.endAngle-i;return e.endAngle=n>e.startAngle?n:e.startAngle,e})}}),k=x.extend({initialize:function(e){x.prototype.initialize.call(this,e),this.innerRadius=this.radius_bounds[0],this.radius_bounds[0]=this.radius_bounds[1],this.bg_stroke="#fff",this.bg_fill="#fff",this.min_arc_len=.05},_render_data:function(e){var t=this,n=e.selectAll("g");n.selectAll("path").attr("id",function(e){return"label-"+e.data.chrom}),n.append("svg:text").filter(function(e){return e.endAngle-e.startAngle>t.min_arc_len}).attr("text-anchor","middle").append("svg:textPath").attr("class","chrom-label").attr("xlink:href",function(e){return"#label-"+e.data.chrom}).attr("startOffset","25%").text(function(e){return e.data.chrom});var i=function(e){var n=(e.endAngle-e.startAngle)/e.value,i=c.range(0,e.value,25e6).map(function(i,r){return{radius:t.innerRadius,angle:i*n+e.startAngle,label:0===r?0:r%3?null:t.formatNum(i)}});return i.length<4&&(i[i.length-1].label=t.formatNum(Math.round((i[i.length-1].angle-e.startAngle)/n))),i},r=function(e){return e.angle>Math.PI?"rotate(180)translate(-16)":null},a=s.filter(this.chroms_layout,function(e){return e.endAngle-e.startAngle>t.min_arc_len});this.drawTicks(this.parent_elt,a,i,r)}});s.extend(k.prototype,y);var j=x.extend({initialize:function(e){x.prototype.initialize.call(this,e);var t=this.track.get("config");t.get("min_value").on("change:value",this._update_min_max,this),t.get("max_value").on("change:value",this._update_min_max,this),t.get("color").on("change:value",this._transition_chrom_data,this)},_update_min_max:function(){var e=this.track.get("config"),t=[e.get_value("min_value"),e.get_value("max_value")];this._update_data_bounds(t),this.parent_elt.selectAll(".min_max").text(function(e,n){return t[n]})},_quantile:function(e,t){return e.sort(c.ascending),c.quantile(e,t)},_render_chrom_data:function(e,t,n){var i=this._get_path_function(t,n);return i?e.datum(n.data).append("path").attr("class","chrom-data").attr("chrom",t.data.chrom).attr("d",i):null},_get_path_function:function(e,t){if("string"==typeof t||!t.data||0===t.data.length)return null;var n=c.scale.linear().domain(this.data_bounds).range(this.radius_bounds).clamp(!0),i=c.scale.linear().domain([0,t.data.length]).range([e.startAngle,e.endAngle]),r=c.svg.line.radial().interpolate("linear").radius(function(e){return n(e[1])}).angle(function(e,t){return i(t)});return c.svg.area.radial().interpolate(r.interpolate()).innerRadius(n(0)).outerRadius(r.radius()).angle(r.angle())},render_labels:function(){var e=this,t=function(){return"rotate(90)"},n=this.drawTicks(this.parent_elt,[this.chroms_layout[0]],this._data_bounds_ticks_fn(),t,!0).classed("min_max",!0);s.each(n,function(t){i(t).click(function(){new _.default.ConfigSettingCollectionView({collection:e.track.get("config")}).render_in_modal("Configure Track")})})},_transition_labels:function(){if(0!==this.data_bounds.length){var e=this,t=s.filter(this.chroms_layout,function(e){return e.endAngle-e.startAngle>.08}),n=s.filter(t,function(e,t){return t%3==0}),i=s.flatten(s.map(n,function(t){return e._data_bounds_ticks_fn()(t)}));this.parent_elt.selectAll("g.tick").data(i).transition().attr("transform",function(e){return"rotate("+(180*e.angle/Math.PI-90)+")translate("+e.radius+",0)"})}},_data_bounds_ticks_fn:function(){var e=this;return visibleChroms=0,function(t){return[{radius:e.radius_bounds[0],angle:t.startAngle,label:e.formatNum(e.data_bounds[0])},{radius:e.radius_bounds[1],angle:t.startAngle,label:e.formatNum(e.data_bounds[1])}]}},get_data_bounds:function(e){}});s.extend(j.prototype,y);var M=j.extend({get_data_bounds:function(e){var t=s.flatten(s.map(e,function(e){return e?s.map(e.data,function(e){return parseInt(e[1],10)||0}):0}));return[s.min(t),this._quantile(t,.98)||s.max(t)]}}),C=x.extend({render:function(){var e=this;i.when(e.track.get("data_manager").data_is_ready()).then(function(){i.when(e.track.get("data_manager").get_genome_wide_data(e.genome)).then(function(t){var n=[],i=e.genome.get_chroms_info();s.each(t,function(t,r){var 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0!==t.responseJSON?s.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):s.default.error("An error occurred. 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Showing folder instead.")}else(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.paginate();r("#center [data-toggle]").tooltip(),r("#center").css("overflow","auto")},paginate:function(e){this.options=i.extend(this.options,e),(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_items_count=this.folder_container.get("folder").models.length,this.options.page_count=Math.ceil(this.options.total_items_count/Galaxy.libraries.preferences.get("folder_page_size"));var t=Galaxy.libraries.preferences.get("folder_page_size")*(this.options.show_page-1),n=null;n=this.folder_container.get("folder").models.slice(t,t+Galaxy.libraries.preferences.get("folder_page_size")),this.options.items_shown=n.length,Galaxy.libraries.preferences.get("folder_page_size")*this.options.show_page>this.options.total_items_count+Galaxy.libraries.preferences.get("folder_page_size")&&(n=[]),Galaxy.libraries.folderToolbarView.renderPaginator(this.options),this.collection.reset(n)},rePaint:function(e){this.options=i.extend(this.options,e),this.removeAllRows(),this.renderAll(),this.checkEmptiness()},addAll:function(e){i.each(e,function(e){Galaxy.libraries.folderListView.collection.add(e,{current_sort_order:!1})}),r("#center [data-toggle]").tooltip(),this.checkEmptiness(),this.postRender()},postRender:function(){var e=this.folderContainer.attributes.metadata;e.contains_file_or_folder=void 0!==this.collection.findWhere({type:"file"})||void 0!==this.collection.findWhere({type:"folder"}),Galaxy.libraries.folderToolbarView.configureElements(e)},renderAll:function(){var e=this;i.each(this.collection.models.reverse(),function(t){e.renderOne(t)}),this.postRender()},renderOne:function(e){this.options.contains_file_or_folder=!0,e.set("folder_id",this.id);var t=new u.default.FolderRowView({model:e});this.rowViews[e.get("id")]=t,this.$el.find("#first_folder_item").after(t.el)},removeOne:function(e){this.$el.find("tr").filter(function(){return r(this).data("id")&&r(this).data("id")===e.id}).remove()},removeAllRows:function(){r(".library-row").remove()},checkEmptiness:function(){0===this.$el.find(".dataset_row").length&&0===this.$el.find(".folder_row").length?this.$el.find(".empty-folder-message").show():this.$el.find(".empty-folder-message").hide()},sortColumnClicked:function(e){e.preventDefault(),this.current_sort_order="asc"===this.current_sort_order?"desc":"asc",this.current_sort_key=e.currentTarget.className.replace("sort-folder-",""),this.collection.sortFolder(this.current_sort_key,this.current_sort_order),this.renderSortIcon()},selectAll:function(e){var t=e.target.checked,n=this;r(":checkbox","#folder_list_body").each(function(){this.checked=t;var e=r(this).closest("tr");t?n.makeDarkRow(e):n.makeWhiteRow(e)})},selectClickedRow:function(e){var t,n,i="";t=r(e.target).closest("tr"),"input"===e.target.localName?(i=e.target,n="input"):"td"===e.target.localName&&(i=t.find(":checkbox")[0],n="td"),i.checked?"td"===n?(i.checked="",this.makeWhiteRow(t)):"input"===n&&this.makeDarkRow(t):"td"===n?(i.checked="selected",this.makeDarkRow(t)):"input"===n&&this.makeWhiteRow(t)},makeDarkRow:function(e){e.removeClass("light").addClass("dark"),e.find("a").removeClass("light").addClass("dark"),e.find(".fa-file-o").removeClass("fa-file-o").addClass("fa-file"),e.find(".fa-folder-o").removeClass("fa-folder-o").addClass("fa-folder")},makeWhiteRow:function(e){e.removeClass("dark").addClass("light"),e.find("a").removeClass("dark").addClass("light"),e.find(".fa-file").removeClass("fa-file").addClass("fa-file-o"),e.find(".fa-folder").removeClass("fa-folder").addClass("fa-folder-o")},renderSortIcon:function(){"asc"===this.current_sort_order?(r('[class*="sort-icon"]').removeClass("fa-sort-alpha-desc").removeClass("fa-sort-alpha-asc"),r(".sort-icon-"+this.current_sort_key).addClass("fa-sort-alpha-asc")):r(".sort-icon-"+this.current_sort_key).addClass("fa-sort-alpha-desc")},templateFolder:function(){return i.template(['<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>',"<% _.each(path, function(path_item) { %>","<% if (path_item[0] != id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are in this folder"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<table data-library-id="<%- parent_library_id  %>" class="grid table table-condensed">',"<thead>",'<th class="button_heading"></th>','<th style="text-align: center; width: 20px; " title="Check to select all datasets"><input id="select-all-checkboxes" style="margin: 0;" type="checkbox"></th>','<th><a class="sort-folder-name" title="Click to reverse order" href="#">name</a> <span title="Sorted alphabetically" class="sort-icon-name fa fa-sort-alpha-<%- order %>"></span></th>','<th style="width:20%;"><a class="sort-folder-description" title="Click to reverse order" href="#">description</a> <span title="Sorted alphabetically" class="sort-icon-description fa"></span></th>','<th style="width:5%;"><a class="sort-folder-file_ext" title="Click to reverse order" href="#">data type</a> <span title="Sorted alphabetically" class="sort-icon-file_ext fa"></span></th>','<th style="width:10%;">size</th>','<th style="width:160px;">time updated (UTC)</th>','<th style="width:5%;"><a class="sort-folder-state" title="Click to reverse order" href="#">state</a> <span title="Sorted alphabetically" class="sort-icon-state fa"></span></th>','<th style="width:150px;"></th> ',"</thead>",'<tbody id="folder_list_body">','<tr id="first_folder_item">',"<td>",'<a href="#<% if (upper_folder_id !== 0){ print("folders/" + upper_folder_id)} %>" title="Go to parent folder" class="btn_open_folder btn btn-default btn-xs">..<a>',"</td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","</tr>","</tbody>","</table>",'<div class="empty-folder-message" style="display:none;">',"This folder is either empty or you do not have proper access permissions to see the contents. If you expected something to show up",' please consult the <a href="https://galaxyproject.org/data-libraries/#permissions" target="_blank">library security wikipage</a>',' or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.',"</div>"].join(""))}});t.default={FolderListView:h}}).call(t,n(2),n(1),n(0))},299:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(13),c=a(l),d=n(126),u=a(d),h=e.View.extend({events:{"click .undelete_dataset_btn":"undeleteDataset","click .undelete_folder_btn":"undeleteFolder","click .edit_folder_btn":"startModifications","click .cancel_folder_btn":"cancelModifications","click .save_folder_btn":"saveModifications"},defaults:{type:null,visibility_config:{edit_folder_btn:!1,save_folder_btn:!1,cancel_folder_btn:!1,permission_folder_btn:!1},edit_mode:!1},initialize:function(e){this.options=i.defaults(e||{},this.defaults),this.render(this.options)},render:function(e){this.options=i.extend(this.options,e);var t=this.options.model,n=null;return"folder"===t.get("type")||"LibraryFolder"===t.get("model_class")?(this.options.type="folder",this.prepareButtons(t),n=t.get("deleted")?this.templateRowDeletedFolder():this.templateRowFolder()):"file"===t.get("type")||"LibraryDatasetDatasetAssociation"===t.get("model_class")||"LibraryDataset"===t.get("model_class")?(this.options.type="file",n=t.get("deleted")?this.templateRowDeletedFile():this.templateRowFile()):(Galaxy.emit.error("Unknown library item type found."),Galaxy.emit.error(t.get("type")||t.get("model_class"))),this.setElement(n({content_item:t,edit_mode:this.options.edit_mode,button_config:this.options.visibility_config})),this.$el.show(),this},prepareButtons:function(e){var t=this.options.visibility_config;!1===this.options.edit_mode?(t.save_folder_btn=!1,t.cancel_folder_btn=!1,!0===e.get("deleted")?(t.edit_folder_btn=!1,t.permission_folder_btn=!1):!1===e.get("deleted")&&(t.save_folder_btn=!1,t.cancel_folder_btn=!1,!0===e.get("can_modify")&&(t.edit_folder_btn=!0),!0===e.get("can_manage")&&(t.permission_folder_btn=!0))):!0===this.options.edit_mode&&(t.edit_folder_btn=!1,t.permission_folder_btn=!1,t.save_folder_btn=!0,t.cancel_folder_btn=!0),this.options.visibility_config=t},showDatasetDetails:function(){Galaxy.libraries.datasetView=new u.default.LibraryDatasetView({id:this.id})},undeleteDataset:function(e){r(".tooltip").hide();var t=this,n=r(e.target).closest("tr").data("id"),i=Galaxy.libraries.folderListView.collection.get(n);i.url=i.urlRoot+i.id+"?undelete=true",i.destroy({success:function(e,i){Galaxy.libraries.folderListView.collection.remove(n);var r=new c.default.Item(i);Galaxy.libraries.folderListView.collection.add(r),Galaxy.libraries.folderListView.collection.sortFolder("name","asc"),s.default.success("Dataset undeleted. Click this to see it.","",{onclick:function(){var e=t.model.get("folder_id");window.location=Galaxy.root+"library/list#folders/"+e+"/datasets/"+t.id}})},error:function(e,t){void 0!==t.responseJSON?s.default.error("Dataset was not undeleted. "+t.responseJSON.err_msg):s.default.error("An error occured! Dataset was not undeleted. Please try again.")}})},undeleteFolder:function(e){r(".tooltip").hide();var t=r(e.target).closest("tr").data("id"),n=Galaxy.libraries.folderListView.collection.get(t);n.url=n.urlRoot+n.id+"?undelete=true",n.destroy({success:function(e,n){Galaxy.libraries.folderListView.collection.remove(t);var i=new c.default.FolderAsModel(n);Galaxy.libraries.folderListView.collection.add(i),Galaxy.libraries.folderListView.collection.sortFolder("name","asc"),s.default.success("Folder undeleted.")},error:function(e,t){void 0!==t.responseJSON?s.default.error("Folder was not undeleted. "+t.responseJSON.err_msg):s.default.error("An error occured! Folder was not undeleted. Please try again.")}})},startModifications:function(){this.options.edit_mode=!0,this.repaint()},cancelModifications:function(){this.options.edit_mode=!1,this.repaint()},saveModifications:function(){var e=Galaxy.libraries.folderListView.collection.get(this.$el.data("id")),t=!1,n=this.$el.find(".input_folder_name").val();if(void 0!==n&&n!==e.get("name")){if(!(n.length>2))return void s.default.warning("Folder name has to be at least 3 characters long.");e.set("name",n),t=!0}var i=this.$el.find(".input_folder_description").val();if(void 0!==i&&i!==e.get("description")&&(e.set("description",i),t=!0),t){var r=this;e.save(null,{patch:!0,success:function(e){r.options.edit_mode=!1,r.repaint(e),s.default.success("Changes to folder saved.")},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg):s.default.error("An error occured while attempting to update the folder.")}})}else this.options.edit_mode=!1,this.repaint(e),s.default.info("Nothing has changed.")},repaint:function(){r(".tooltip").hide();var e=this.$el;this.render(),e.replaceWith(this.$el),this.$el.find("[data-toggle]").tooltip()},templateRowFolder:function(){return i.template(['<tr class="folder_row light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Folder" class="fa fa-folder-o"/>',"</td>",'<td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td>',"<% if(!edit_mode) { %>","<td>",'<a href="#folders/<%- content_item.id %>"><%- content_item.get("name") %></a>',"</td>","<td>",'<%- content_item.get("description") %>',"</td>","<% } else if(edit_mode){ %>",'<td><textarea rows="4" class="form-control input_folder_name" placeholder="name" ><%- content_item.get("name") %></textarea></td>','<td><textarea rows="4" class="form-control input_folder_description" placeholder="description" ><%- content_item.get("description") %></textarea></td>',"<% } %>","<td>folder</td>","<td></td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td></td>","<td>","<% if(edit_mode) { %>",'<button data-toggle="tooltip" data-placement="top" title="Save changes" class="primary-button btn-xs save_folder_btn" type="button" style="<% if(button_config.save_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-floppy-o"/> Save',"</button>",'<button data-toggle="tooltip" data-placement="top" title="Discard changes" class="primary-button btn-xs cancel_folder_btn" type="button" style="<% if(button_config.cancel_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-times"/> Cancel',"</button>","<% } else if (!edit_mode){%>",'<button data-toggle="tooltip" data-placement="top" title="Modify \'<%- content_item.get("name") %>\'" class="primary-button btn-xs edit_folder_btn" type="button" style="<% if(button_config.edit_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-pencil"/> Edit',"</button>",'<a href="#/folders/<%- content_item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permission_folder_btn" title="Permissions of \'<%- content_item.get("name") %>\'" style="<% if(button_config.permission_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-group"/> Manage',"</button>","</a>","<% } %>","</td>","</tr>"].join(""))},templateRowFile:function(){return i.template(['<tr class="dataset_row light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Dataset" class="fa fa-file-o"/>',"</td>",'<td style="text-align: center; ">','<input style="margin: 0;" type="checkbox">',"</td>","<td>",'<a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>" class="library-dataset">','<%- content_item.get("name") %>',"<a>","</td>",'<td><%- content_item.get("message") %></td>','<td><%= _.escape(content_item.get("file_ext")) %></td>','<td><%= _.escape(content_item.get("file_size")) %></td>','<td><%= _.escape(content_item.get("update_time")) %></td>',"<td>",'<% if ( content_item.get("state") !== "ok" ) { %>','<%= _.escape(content_item.get("state")) %>',"<% } %>","</td>","<td>",'<% if (content_item.get("is_unrestricted")) { %>','<span data-toggle="tooltip" data-placement="top" title="Unrestricted dataset" style="color:grey;" class="fa fa-globe fa-lg"/>',"<% } %>",'<% if (content_item.get("is_private")) { %>','<span data-toggle="tooltip" data-placement="top" title="Private dataset" style="color:grey;" class="fa fa-key fa-lg"/>',"<% } %>",'<% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %>','<span data-toggle="tooltip" data-placement="top" title="Restricted dataset" style="color:grey;" class="fa fa-shield fa-lg"/>',"<% } %>",'<% if (content_item.get("can_manage")) { %>','<a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-dataset-btn" title="Permissions of \'<%- content_item.get("name") %>\'">','<span class="fa fa-group"/> Manage',"</button>","</a>","<% } %>","</td>","</tr>"].join(""))},templateRowDeletedFile:function(){return i.template(['<tr class="active deleted_dataset library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Dataset" class="fa fa-file-o"/>',"</td>","<td></td>",'<td style="color:grey;">','<%- content_item.get("name") %>',"</td>","<td>",'<%- content_item.get("message") %>',"</td>","<td>",'<%= _.escape(content_item.get("file_ext")) %>',"</td>","<td>",'<%= _.escape(content_item.get("file_size")) %>',"</td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td>",'<% if ( content_item.get("state") !== "ok" ) { %>','<%= _.escape(content_item.get("state")) %>',"<% } %>","</td>","<td>",'<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"/>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- content_item.get("name") %>\'" class="primary-button btn-xs undelete_dataset_btn" type="button" style="margin-left:1em;">','<span class="fa fa-unlock"/> Undelete',"</button>","</td>","</tr>"].join(""))},templateRowDeletedFolder:function(){return i.template(['<tr class="active deleted_folder light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Folder" class="fa fa-folder-o"/>',"</td>","<td></td>",'<td style="color:grey;">','<%- content_item.get("name") %>',"</td>","<td>",'<%- content_item.get("description") %>',"</td>","<td>","folder","</td>","<td></td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td></td>","<td>",'<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"/>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- content_item.get("name") %>\'" class="primary-button btn-xs undelete_folder_btn" type="button" style="margin-left:1em;">','<span class="fa fa-unlock"/> Undelete',"</button>","</td>","</tr>"].join(""))}});t.default={FolderRowView:h}}).call(t,n(2),n(1),n(0))},300:function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(7),o=r(a),s=n(13),l=r(s),c=n(301),d=r(c),u=n(1),h=r(u),f=e.View.extend({el:"#libraries_element",events:{"click .sort-libraries-link":"sort_clicked"},defaults:{page_count:null,show_page:null,all_fetched:!1},initialize:function(e){this.options=h.default.defaults(this.options||{},e,this.defaults);var t=this;this.modal=null,this.collection=new l.default.Libraries,this.collection.url=this.collection.urlRoot+"?deleted=false",this.collection.fetch({success:function(){t.render()},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occurred.")}})},render:function(e){this.options=h.default.extend(this.options,e),this.setElement("#libraries_element");var t=this.templateLibraryList(),n=null,r=null,a=function(e){return!0===e.get("public")};if(i(".tooltip").hide(),void 0!==e&&(r=void 0!==e.models?e.models:null),null!==this.collection&&null===r)this.sortLibraries(),n=Galaxy.libraries.preferences.get("with_deleted")?this.collection.models:this.collection.where({deleted:!1}),Galaxy.libraries.preferences.get("without_restricted")&&(n=h.default.filter(n,a));else if(null!==r){if(Galaxy.libraries.preferences.get("with_deleted"))n=r;else{var o=function(e){return!1===e.get("deleted")};n=h.default.filter(r,o)}Galaxy.libraries.preferences.get("without_restricted")&&(n=h.default.filter(n,a))}else n=[];(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_libraries_count=n.length;var s=Galaxy.libraries.preferences.get("library_page_size")*(this.options.show_page-1);this.options.page_count=Math.ceil(this.options.total_libraries_count/Galaxy.libraries.preferences.get("library_page_size")),this.options.total_libraries_count>0&&s<this.options.total_libraries_count?(n=n.slice(s,s+Galaxy.libraries.preferences.get("library_page_size")),this.options.libraries_shown=n.length,Galaxy.libraries.preferences.get("library_page_size")*this.options.show_page>this.options.total_libraries_count+Galaxy.libraries.preferences.get("library_page_size")&&(n=[]),this.$el.html(t({length:1,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options),this.renderRows(n)):(this.$el.html(t({length:0,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options)),i("#center [data-toggle]").tooltip(),i("#center").css("overflow","auto")},fetchDeleted:function(){if(this.options.all_fetched)this.render();else{var e=this;this.collection.url=this.collection.urlRoot+"?deleted=true",this.collection.fetch({remove:!1,success:function(){e.options.all_fetched=!0,e.render()},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occurred.")}})}},renderRows:function(e){for(var t=0;t<e.length;t++){var n=e[t];this.renderOne({library:n})}},renderOne:function(e){var t=e.library,n=new d.default.LibraryRowView(t);this.$el.find("#library_list_body").append(n.el)},sort_clicked:function(){"asc"===Galaxy.libraries.preferences.get("sort_order")?Galaxy.libraries.preferences.set({sort_order:"desc"}):Galaxy.libraries.preferences.set({sort_order:"asc"}),this.render()},sortLibraries:function(){"name"===Galaxy.libraries.preferences.get("sort_by")&&("asc"===Galaxy.libraries.preferences.get("sort_order")?this.collection.sortLibraries("name","asc"):"desc"===Galaxy.libraries.preferences.get("sort_order")&&this.collection.sortLibraries("name","desc"))},searchLibraries:function(e){if(""!==i.trim(e)){var t=null;t=this.collection.search(e),this.options.searching=!0,this.render({models:t,show_page:1})}else this.options.searching=!1,this.render()},templateLibraryList:function(){return h.default.template(['<div class="library_container table-responsive">',"<% if(length === 0) { %>","<% if(search_term.length > 0) { %>","<div>","There are no libraries matching your search. Try different keyword.","</div>","<% } else{ %>","<div>","There are no libraries visible to you here. If you expected some to show up please consult the",' <a href="https://galaxyproject.org/data-libraries/#permissions" target="_blank">library security wikipage</a>',' or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.',"</div>","<% }%>","<% } else{ %>",'<table class="grid table table-condensed">',"<thead>",'<th style="width:30%;">','<a class="sort-libraries-link" title="Click to reverse order" href="#">',"name","</a>",'<span title="Sorted alphabetically" class="fa fa-sort-alpha-<%- order %>"/>',"</th>",'<th style="width:22%;">description</th>','<th style="width:22%;">synopsis</th> ','<th style="width:26%;"></th>',"</thead>",'<tbody id="library_list_body">',"</tbody>","</table>","<% }%>","</div>"].join(""))}});t.default={LibraryListView:f}}).call(t,n(2),n(0))},301:function(e,t,n){"use strict";(function(e,i,r){Object.defineProperty(t,"__esModule",{value:!0});var a=n(7),o=function(e){return e&&e.__esModule?e:{default:e}}(a),s=e.View.extend({events:{"click .edit_library_btn":"edit_button_clicked","click .cancel_library_btn":"cancel_library_modification","click .save_library_btn":"save_library_modification","click .delete_library_btn":"delete_library","click .undelete_library_btn":"undelete_library"},edit_mode:!1,element_visibility_config:{upload_library_btn:!1,edit_library_btn:!1,permission_library_btn:!1,save_library_btn:!1,cancel_library_btn:!1,delete_library_btn:!1,undelete_library_btn:!1},initialize:function(e){this.render(e)},render:function(e){void 0===e&&(e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id"))),this.prepareButtons(e);var t=this.templateRow();return this.setElement(t({library:e,button_config:this.element_visibility_config,edit_mode:this.edit_mode})),this.$el.show(),this},repaint:function(e){i(".tooltip").hide();var t=this.$el;this.render(),t.replaceWith(this.$el),this.$el.find("[data-toggle]").tooltip()},prepareButtons:function(e){var t=this.element_visibility_config;!1===this.edit_mode?(t.save_library_btn=!1,t.cancel_library_btn=!1,t.delete_library_btn=!1,!0===e.get("deleted")?(t.undelete_library_btn=!0,t.upload_library_btn=!1,t.edit_library_btn=!1,t.permission_library_btn=!1):!1===e.get("deleted")&&(t.save_library_btn=!1,t.cancel_library_btn=!1,t.undelete_library_btn=!1,!0===e.get("can_user_add")&&(t.upload_library_btn=!0),!0===e.get("can_user_modify")&&(t.edit_library_btn=!0),!0===e.get("can_user_manage")&&(t.permission_library_btn=!0))):!0===this.edit_mode&&(t.upload_library_btn=!1,t.edit_library_btn=!1,t.permission_library_btn=!1,t.save_library_btn=!0,t.cancel_library_btn=!0,t.delete_library_btn=!0,t.undelete_library_btn=!1),this.element_visibility_config=t},edit_button_clicked:function(){this.edit_mode=!0,this.repaint()},cancel_library_modification:function(){this.edit_mode=!1,this.repaint()},save_library_modification:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=!1,n=this.$el.find(".input_library_name").val();if(void 0!==n&&n!==e.get("name")){if(!(n.length>2))return void o.default.warning("Library name has to be at least 3 characters long.");e.set("name",n),t=!0}var i=this.$el.find(".input_library_description").val();void 0!==i&&i!==e.get("description")&&(e.set("description",i),t=!0);var r=this.$el.find(".input_library_synopsis").val();if(void 0!==r&&r!==e.get("synopsis")&&(e.set("synopsis",r),t=!0),t){var a=this;e.save(null,{patch:!0,success:function(e){a.edit_mode=!1,a.repaint(e),o.default.success("Changes to library saved.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured while attempting to update the library.")}})}else this.edit_mode=!1,this.repaint(e),o.default.info("Nothing has changed.")},delete_library:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=this;e.destroy({success:function(e){e.set("deleted",!0),Galaxy.libraries.libraryListView.collection.add(e),t.edit_mode=!1,!1===Galaxy.libraries.preferences.get("with_deleted")?(i(".tooltip").hide(),t.repaint(e),t.$el.remove()):!0===Galaxy.libraries.preferences.get("with_deleted")&&t.repaint(e),o.default.success("Library has been marked deleted.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured during deleting the library.")}})},undelete_library:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=this;e.url=e.urlRoot+e.id+"?undelete=true",e.destroy({success:function(e){e.set("deleted",!1),Galaxy.libraries.libraryListView.collection.add(e),t.edit_mode=!1,t.repaint(e),o.default.success("Library has been undeleted.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured while undeleting the library.")}})},templateRow:function(){return r.template(['<tr class="<% if(library.get("deleted") === true) { print("active") } %>" style="display:none;" data-id="<%- library.get("id") %>">',"<% if(!edit_mode) { %>",'<% if(library.get("deleted")) { %>','<td style="color:grey;"><%- library.get("name") %></td>',"<% } else { %>",'<td><a href="#folders/<%- library.get("root_folder_id") %>"><%- library.get("name") %></a></td>',"<% } %>",'<% if(library.get("description")) { %>','<% if( (library.get("description")).length> 80 ) { %>','<td data-toggle="tooltip" data-placement="bottom" title="<%= _.escape(library.get("description")) %>"><%= _.escape(library.get("description")).substring(0, 80) + "..." %></td>',"<% } else { %>",'<td><%= _.escape(library.get("description"))%></td>',"<% } %>","<% } else { %>","<td></td>","<% } %>",'<% if(library.get("synopsis")) { %>','<% if( (library.get("synopsis")).length> 120 ) { %>','<td data-toggle="tooltip" data-placement="bottom" title="<%= _.escape(library.get("synopsis")) %>"><%= _.escape(library.get("synopsis")).substring(0, 120) + "..." %></td>',"<% } else { %>",'<td><%= _.escape(library.get("synopsis"))%></td>',"<% } %>","<% } else { %>","<td></td>","<% } %>","<% } else if(edit_mode){ %>",'<td><textarea rows="4" class="form-control input_library_name" placeholder="name" ><%- library.get("name") %></textarea></td>','<td><textarea rows="4" class="form-control input_library_description" placeholder="description" ><%- library.get("description") %></textarea></td>','<td><textarea rows="4" class="form-control input_library_synopsis" placeholder="synopsis" ><%- library.get("synopsis") %></textarea></td>',"<% } %>",'<td class="right-center">','<% if( (library.get("public")) && (library.get("deleted") === false) ) { %>','<span data-toggle="tooltip" data-placement="top" title="Unrestricted library" style="color:grey;" class="fa fa-globe fa-lg"> </span>',"<% }%>",'<button data-toggle="tooltip" data-placement="top" title="Modify \'<%- library.get("name") %>\'" class="primary-button btn-xs edit_library_btn" type="button" style="<% if(button_config.edit_library_btn === false) { print("display:none;") } %>"><span class="fa fa-pencil"></span> Edit</button>','<a href="#library/<%- library.get("id") %>/permissions"><button data-toggle="tooltip" data-placement="top" title="Permissions of \'<%- library.get("name") %>\'" class="primary-button btn-xs permission_library_btn" type="button" style="<% if(button_config.permission_library_btn === false) { print("display:none;") } %>"><span class="fa fa-group"></span> Manage</button></a>','<button data-toggle="tooltip" data-placement="top" title="Save changes" class="primary-button btn-xs save_library_btn" type="button" style="<% if(button_config.save_library_btn === false) { print("display:none;") } %>"><span class="fa fa-floppy-o"></span> Save</button>','<button data-toggle="tooltip" data-placement="top" title="Discard changes" class="primary-button btn-xs cancel_library_btn" type="button" style="<% if(button_config.cancel_library_btn === false) { print("display:none;") } %>"><span class="fa fa-times"></span> Cancel</button>','<button data-toggle="tooltip" data-placement="top" title="Delete \'<%- library.get("name") %>\'" class="primary-button btn-xs delete_library_btn" type="button" style="<% if(button_config.delete_library_btn === false) { print("display:none;") } %>"><span class="fa fa-trash-o"></span> Delete</button>','<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey; <% if(button_config.undelete_library_btn === false) { print("display:none;") } %>" class="fa fa-ban fa-lg"></span>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- library.get("name") %>\' " class="primary-button btn-xs undelete_library_btn" type="button" style="<% if(button_config.undelete_library_btn === false) { print("display:none;") } %>"><span class="fa fa-unlock"></span> Undelete</button>',"</td>","</tr>"].join(""))}});t.default={LibraryRowView:s}}).call(t,n(2),n(0),n(1))},302:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(13),c=a(l),d=e.View.extend({el:"#center",defaults:{search_term:""},events:{"click #create_new_library_btn":"createLibraryFromModal","click #include_deleted_chk":"includeDeletedChecked","click #exclude_restricted_chk":"excludeRestrictedChecked","click .page_size_prompt":"showPageSizePrompt","keyup .library-search-input":"searchLibraries"},initialize:function(e){this.options=i.defaults(this.options||{},e,this.defaults),this.render()},render:function(){var e=this.templateToolBar(),t=!1,n=!0;Galaxy.user&&(t=Galaxy.user.isAdmin(),n=Galaxy.user.isAnonymous()),this.$el.html(e({admin_user:t,anon_user:n})),t&&(this.$el.find("#include_deleted_chk")[0].checked=Galaxy.libraries.preferences.get("with_deleted"),this.$el.find("#exclude_restricted_chk")[0].checked=Galaxy.libraries.preferences.get("without_restricted"))},renderPaginator:function(e){this.options=i.extend(this.options,e);var t=this.templatePaginator();this.$el.find("#library_paginator").html(t({show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_libraries_count:this.options.total_libraries_count,libraries_shown:this.options.libraries_shown,library_page_size:Galaxy.libraries.preferences.get("library_page_size")}))},createLibraryFromModal:function(e){e.preventDefault(),e.stopPropagation();var t=this;this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Create New Library",body:this.templateNewLibraryInModal(),buttons:{Create:function(){t.createNewLibrary()},Close:function(){t.modal.hide()}}})},createNewLibrary:function(){var e=this.serializeNewLibrary();if(this.validateNewLibrary(e)){var t=new c.default.Library,n=this;t.save(e,{success:function(e){Galaxy.libraries.libraryListView.collection.add(e),n.modal.hide(),n.clearLibraryModal(),Galaxy.libraries.libraryListView.render(),s.default.success("Library created.")},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg):s.default.error("An error occured.")}})}else s.default.error("Library's name is missing.");return!1},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many libraries per page do you want to see?",Galaxy.libraries.preferences.get("library_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({library_page_size:parseInt(t)}),Galaxy.libraries.libraryListView.render({show_page:1}))},clearLibraryModal:function(){r("input[name='Name']").val(""),r("input[name='Description']").val(""),r("input[name='Synopsis']").val("")},serializeNewLibrary:function(){return{name:r("input[name='Name']").val(),description:r("input[name='Description']").val(),synopsis:r("input[name='Synopsis']").val()}},validateNewLibrary:function(e){return""!==e.name},includeDeletedChecked:function(e){e.target.checked?(Galaxy.libraries.preferences.set({with_deleted:!0}),Galaxy.libraries.libraryListView.fetchDeleted()):(Galaxy.libraries.preferences.set({with_deleted:!1}),Galaxy.libraries.libraryListView.render())},excludeRestrictedChecked:function(e){e.target.checked?Galaxy.libraries.preferences.set({without_restricted:!0}):Galaxy.libraries.preferences.set({without_restricted:!1}),Galaxy.libraries.libraryListView.render()},searchLibraries:function(e){var t=r(".library-search-input").val();this.options.search_term=t,Galaxy.libraries.libraryListView.searchLibraries(t)},templateToolBar:function(){return i.template(['<div class="library_style_container">','<div id="toolbar_form">','<div id="library_toolbar">','<form class="form-inline" role="form">','<span><strong><a href="#" title="Go to first page">DATA LIBRARIES</a></strong></span>','<span id="library_paginator" class="library-paginator">',"</span>",'<div class="form-group toolbar-item">','<input type="text" class="form-control library-search-input" placeholder="Search" size="30">',"</div>","<% if(admin_user === true) { %>",'<div class="checkbox toolbar-item" style="height: 20px;">',"<label>",'<input id="include_deleted_chk" type="checkbox">',"include deleted ","</input>","</label>","<label>",'<input id="exclude_restricted_chk" type="checkbox">',"exclude restricted","</input>","</label>","</div>",'<span class="toolbar-item" data-toggle="tooltip" data-placement="top" title="Create New Library">','<button id="create_new_library_btn" class="primary-button btn-xs" type="button"><span class="fa fa-plus"></span> New Library</button>',"</span>","<% } %>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/list-of-libraries/" target="_blank">','<button class="primary-button" type="button"><span class="fa fa-question-circle"></span> Help</button>',"</a>","</span>","</form>","</div>","</div>",'<div id="libraries_element">',"</div>","</div>"].join(""))},templatePaginator:function(){return i.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- libraries_shown %> libraries shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- library_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_libraries_count %> total","</span>"].join(""))},templateNewLibraryInModal:function(){return i.template(['<div id="new_library_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">','<input type="text" name="Synopsis" value="" placeholder="Synopsis">',"</form>","</div>"].join(""))}});t.default={LibraryToolbarView:d}}).call(t,n(2),n(1),n(0))},303:function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(3),l=o(s),c=n(7),d=o(c),u=n(13),h=o(u),f=n(10),p=o(f);n(127);var _=e.View.extend({el:"#center",events:{"click #toolbtn_create_folder":"createFolderFromModal","click #toolbtn_bulk_import":"modalBulkImport","click #include_deleted_datasets_chk":"checkIncludeDeleted","click #toolbtn_bulk_delete":"deleteSelectedItems","click .toolbtn-show-locinfo":"showLocInfo","click .page_size_prompt":"showPageSizePrompt"},defaults:{can_add_library_item:!1,contains_file_or_folder:!1,chain_call_control:{total_number:0,failed_number:0},disabled_jstree_element:"folders"},modal:null,jstree:null,histories:null,select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=i.defaults(e||{},this.defaults),this.fetchExtAndGenomes(),this.render()},render:function(e){this.options=i.extend(this.options,e);var t=this.templateToolBar(),n={id:this.options.id,is_admin:!1,is_anonym:!0,mutiple_add_dataset_options:!1};Galaxy.user&&(n.is_admin=Galaxy.user.isAdmin(),n.is_anonym=Galaxy.user.isAnonymous(),null===Galaxy.config.user_library_import_dir&&!1===Galaxy.config.allow_library_path_paste&&null===Galaxy.config.library_import_dir||(n.mutiple_add_dataset_options=!0)),this.$el.html(t(n))},renderPaginator:function(e){this.options=i.extend(this.options,e);var t=this.templatePaginator();r("body").find(".folder-paginator").html(t({id:this.options.id,show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_items_count:this.options.total_items_count,items_shown:this.options.items_shown,folder_page_size:Galaxy.libraries.preferences.get("folder_page_size")}))},configureElements:function(e){this.options=i.extend(this.options,e),!0===this.options.can_add_library_item?r(".add-library-items").show():r(".add-library-items").hide(),!0===this.options.contains_file_or_folder&&Galaxy.user?Galaxy.user.isAnonymous()?(r(".dataset-manipulation").show(),r(".logged-dataset-manipulation").hide()):(r(".logged-dataset-manipulation").show(),r(".dataset-manipulation").show()):(r(".logged-dataset-manipulation").hide(),r(".dataset-manipulation").hide()),this.$el.find("[data-toggle]").tooltip()},createFolderFromModal:function(e){e.preventDefault(),e.stopPropagation();var t=this,n=this.templateNewFolderInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Create New Folder",body:n(),buttons:{Create:function(){t.create_new_folder_event()},Close:function(){Galaxy.modal.hide()}}})},create_new_folder_event:function(){var t=this.serialize_new_folder();if(this.validate_new_folder(t)){var n,i=new h.default.FolderAsModel,r=e.history.fragment.split("/");n=r.indexOf("page")>-1?r[r.length-3]:r[r.length-1],i.url=i.urlRoot+n,i.save(t,{success:function(e){Galaxy.modal.hide(),d.default.success("Folder created."),e.set({type:"folder"}),Galaxy.libraries.folderListView.collection.add(e)},error:function(e,t){Galaxy.modal.hide(),void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})}else d.default.error("Folder's name is missing.");return!1},serialize_new_folder:function(){return{name:r("input[name='Name']").val(),description:r("input[name='Description']").val()}},validate_new_folder:function(e){return""!==e.name},modalBulkImport:function(){if(0===this.findCheckedRows().length)d.default.info("You must select some datasets first.");else{var e=this;this.histories=new h.default.GalaxyHistories,this.histories.fetch().done(function(){var t=e.templateBulkImportInModal();e.modal=Galaxy.modal,e.modal.show({closing_events:!0,title:"Import into History",body:t({histories:e.histories.models}),buttons:{Import:function(){e.importAllIntoHistory()},Close:function(){Galaxy.modal.hide()}}})}).fail(function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")})}},importAllIntoHistory:function(){this.modal.disableButton("Import");var e=this.modal.$("input[name=history_name]").val(),t=this;if(""!==e)r.post(Galaxy.root+"api/histories",{name:e}).done(function(e){t.options.last_used_history_id=e.id,t.processImportToHistory(e.id,e.name)}).fail(function(e,t,n){d.default.error("An error occurred.")}).always(function(){t.modal.enableButton("Import")});else{var n=r("select[name=dataset_import_bulk] option:selected").val();this.options.last_used_history_id=n;var i=r("select[name=dataset_import_bulk] option:selected").text();this.processImportToHistory(n,i),this.modal.enableButton("Import")}},processImportToHistory:function(e,t){var n=[],i=[];this.findCheckedRows().each(function(){var e=r(this).closest("tr").data("id");"F"==e.substring(0,1)?i.push(e):n.push(e)});for(var o=[],s=n.length-1;s>=0;s--){var l=n[s],c=new h.default.HistoryItem;c.url=c.urlRoot+e+"/contents",c.content=l,c.source="library",o.push(c)}for(var s=i.length-1;s>=0;s--){var d=i[s],c=new h.default.HistoryItem;c.url=c.urlRoot+e+"/contents",c.content=d,c.source="library_folder",o.push(c)}this.initChainCallControl({length:o.length,action:"to_history",history_name:t}),a.getJSON(Galaxy.root+"history/set_as_current?id="+e),this.chainCallImportingIntoHistory(o,t)},updateProgress:function(){this.progress+=this.progressStep,r(".progress-bar-import").width(Math.round(this.progress)+"%");var e=Math.round(this.progress)+"% Complete";r(".completion_span").text(e)},download:function(e,t){var n=[],i=[];this.findCheckedRows().each(function(){var e=r(this).closest("tr").data("id");"F"==e.substring(0,1)?i.push(e):n.push(e)});var a=Galaxy.root+"api/libraries/datasets/download/"+t,o={ld_ids:n,folder_ids:i};this.processDownload(a,o,"get")},processDownload:function(e,t,n){if(e&&t){t="string"==typeof t?t:r.param(t);var i="";r.each(t.split("&"),function(){var e=this.split("=");i+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),r('<form action="'+e+'" method="'+(n||"post")+'">'+i+"</form>").appendTo("body").submit().remove(),d.default.info("Your download will begin soon.")}else d.default.error("An error occurred.")},addFilesFromHistoryModal:function(){this.histories=new h.default.GalaxyHistories;var e=this;this.histories.fetch().done(function(){e.modal=Galaxy.modal;var t=e.templateAddFilesFromHistory();e.modal.show({closing_events:!0,title:"Adding datasets from your history",body:t({histories:e.histories.models}),buttons:{Add:function(){e.addAllDatasetsFromHistory()},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),e.fetchAndDisplayHistoryContents(e.histories.models[0].id),r("#dataset_add_bulk").change(function(t){e.fetchAndDisplayHistoryContents(t.target.value)})}).fail(function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")})},importFilesFromPathModal:function(){var e=this;this.modal=Galaxy.modal;var t=this.templateImportPathModal();this.modal.show({closing_events:!0,title:"Please enter paths to import",body:t({}),buttons:{Import:function(){e.importFromPathsClicked(e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),this.renderSelectBoxes()},fetchExtAndGenomes:function(){var e=this;l.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){e.list_extensions=[];for(var n in t)e.list_extensions.push({id:t[n].extension,text:t[n].extension,description:t[n].description,description_url:t[n].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)},cache:!0}),l.default.get({url:Galaxy.root+"api/genomes",success:function(t){e.list_genomes=[];for(var n in t)e.list_genomes.push({id:t[n][1],text:t[n][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})},cache:!0})},renderSelectBoxes:function(){var e=this;this.select_genome=new p.default.View({css:"library-genome-select",data:e.list_genomes,container:Galaxy.modal.$el.find("#library_genome_select"),value:"?"}),this.select_extension=new p.default.View({css:"library-extension-select",data:e.list_extensions,container:Galaxy.modal.$el.find("#library_extension_select"),value:"auto"})},importFilesFromGalaxyFolderModal:function(e){var t=this,n=this.templateBrowserModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Please select folders or files",body:n({}),buttons:{Import:function(){t.importFromJstreePath(t,e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+t.id,{trigger:!0})}}),r(".libimport-select-all").bind("click",function(){r("#jstree_browser").jstree("check_all")}),r(".libimport-select-none").bind("click",function(){r("#jstree_browser").jstree("uncheck_all")}),this.renderSelectBoxes(),e.disabled_jstree_element="folders",this.renderJstree(e),r("input[type=radio]").change(function(n){"jstree-disable-folders"===n.target.value?(e.disabled_jstree_element="folders",t.renderJstree(e),r(".jstree-folders-message").hide(),r(".jstree-preserve-structure").hide(),r(".jstree-files-message").show()):"jstree-disable-files"===n.target.value&&(r(".jstree-files-message").hide(),r(".jstree-folders-message").show(),r(".jstree-preserve-structure").show(),e.disabled_jstree_element="files",t.renderJstree(e))})},renderJstree:function(e){this.options=i.extend(this.options,e);var t=e.source||"userdir",n=this.options.disabled_jstree_element;this.jstree=new h.default.Jstree,this.jstree.url=this.jstree.urlRoot+"?target="+t+"&format=jstree&disable="+n,this.jstree.fetch({success:function(e,t){r("#jstree_browser").jstree("destroy"),r("#jstree_browser").jstree({core:{data:e},plugins:["types","checkbox"],types:{folder:{icon:"jstree-folder"},file:{icon:"jstree-file"}},checkbox:{three_state:!1}})},error:function(e,t){void 0!==t.responseJSON?404001===t.responseJSON.err_code?d.default.warning(t.responseJSON.err_msg):d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})},importFromPathsClicked:function(){var e=this.modal.$el.find(".preserve-checkbox").is(":checked"),t=this.modal.$el.find(".link-checkbox").is(":checked"),n=this.modal.$el.find(".spacetab-checkbox").is(":checked"),i=this.modal.$el.find(".posix-checkbox").is(":checked"),a=this.modal.$el.find(".tag-files").is(":checked"),o=this.select_extension.value(),s=this.select_genome.value(),l=r("textarea#import_paths").val(),c=[];if(l){this.modal.disableButton("Import"),l=l.split("\n");for(var u=l.length-1;u>=0;u--){var h=l[u].trim();0!==h.length&&c.push(h)}this.initChainCallControl({length:c.length,action:"adding_datasets"}),this.chainCallImportingFolders({paths:c,preserve_dirs:e,link_data:t,space_to_tab:n,to_posix_lines:i,source:"admin_path",file_type:o,tag_using_filenames:a,dbkey:s})}else d.default.info("Please enter a path relative to Galaxy root.")},initChainCallControl:function(e){var t;switch(e.action){case"adding_datasets":t=this.templateAddingDatasetsProgressBar(),this.modal.$el.find(".modal-body").html(t({folder_name:this.options.folder_name}));break;case"deleting_datasets":t=this.templateDeletingItemsProgressBar(),this.modal.$el.find(".modal-body").html(t());break;case"to_history":t=this.templateImportIntoHistoryProgressBar(),this.modal.$el.find(".modal-body").html(t({history_name:e.history_name}));break;default:Galaxy.emit.error("Wrong action specified.","datalibs")}this.progress=0,this.progressStep=100/e.length,this.options.chain_call_control.total_number=e.length,this.options.chain_call_control.failed_number=0},importFromJstreePath:function(e,t){var n=r("#jstree_browser").jstree().get_selected(!0),a=i.filter(n,function(e){return 0==e.state.disabled}),o=this.modal.$el.find(".preserve-checkbox").is(":checked"),s=this.modal.$el.find(".link-checkbox").is(":checked"),l=this.modal.$el.find(".spacetab-checkbox").is(":checked"),c=this.modal.$el.find(".posix-checkbox").is(":checked"),u=this.select_extension.value(),h=this.select_genome.value(),f=this.modal.$el.find(".tag-files").is(":checked"),p=a[0].type,_=[];if(a.length<1)d.default.info("Please select some items first.");else{this.modal.disableButton("Import");for(var g=a.length-1;g>=0;g--)void 0!==a[g].li_attr.full_path&&_.push(a[g].li_attr.full_path);if(this.initChainCallControl({length:_.length,action:"adding_datasets"}),"folder"===p){var m=t.source+"_folder";this.chainCallImportingFolders({paths:_,preserve_dirs:o,link_data:s,space_to_tab:l,to_posix_lines:c,source:m,file_type:u,dbkey:h,tag_using_filenames:f})}else if("file"===p){var m=t.source+"_file";this.chainCallImportingUserdirFiles({paths:_,file_type:u,dbkey:h,link_data:s,space_to_tab:l,to_posix_lines:c,source:m,tag_using_filenames:f})}}},fetchAndDisplayHistoryContents:function(e){var t=new h.default.HistoryContents({id:e}),n=this;t.fetch({success:function(t){var i=n.templateHistoryContents();n.histories.get(e).set({contents:t}),n.modal.$el.find("#selected_history_content").html(i({history_contents:t.models.reverse()})),n.modal.$el.find(".history-import-select-all").bind("click",function(){r("#selected_history_content [type=checkbox]").prop("checked",!0)}),n.modal.$el.find(".history-import-unselect-all").bind("click",function(){r("#selected_history_content [type=checkbox]").prop("checked",!1)})},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})},addAllDatasetsFromHistory:function(){var e=this.modal.$el.find("#selected_history_content").find(":checked"),t=[],n=[],i=[];if(e.length<1)d.default.info("You must select some datasets first.");else{this.modal.disableButton("Add"),e.each(function(){var e=r(this).closest("li").data("id");if(e){var i=r(this).closest("li").data("name");t.push(e),n.push(i)}});for(var a=t.length-1;a>=0;a--){var o=t[a],s=new h.default.Item;s.url=Galaxy.root+"api/folders/"+this.options.id+"/contents","collection"===n[a]?s.set({from_hdca_id:o}):s.set({from_hda_id:o}),i.push(s)}this.initChainCallControl({length:i.length,action:"adding_datasets"}),this.chainCallAddingHdas(i)}},chainCallImportingIntoHistory:function(e,t){var n=this,i=e.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?d.default.success("Selected datasets imported into history. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}}):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?d.default.error("There was an error and no datasets were imported into history."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&d.default.warning("Some of the datasets could not be imported into history. Click this to see what was imported.","",{onclick:function(){window.location=Galaxy.root}}),Galaxy.modal.hide(),!0;r.when(i.save({content:i.content,source:i.source})).done(function(){n.updateProgress(),n.chainCallImportingIntoHistory(e,t)}).fail(function(){n.options.chain_call_control.failed_number+=1,n.updateProgress(),n.chainCallImportingIntoHistory(e,t)})},chainCallImportingUserdirFiles:function(e){var t=this,n=e.paths.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?(d.default.success("Selected files imported into the current folder"),Galaxy.modal.hide()):d.default.error("An error occured."),!0;r.when(r.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+n+"&file_type="+e.file_type+"&link_data="+e.link_data+"&space_to_tab="+e.space_to_tab+"&to_posix_lines="+e.to_posix_lines+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(n){t.updateProgress(),t.chainCallImportingUserdirFiles(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingUserdirFiles(e)})},chainCallImportingFolders:function(e){var t=this,n=e.paths.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?(d.default.success("Selected folders and their contents imported into the current folder."),Galaxy.modal.hide()):d.default.error("An error occured."),!0;r.when(r.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+n+"&preserve_dirs="+e.preserve_dirs+"&link_data="+e.link_data+"&to_posix_lines="+e.to_posix_lines+"&space_to_tab="+e.space_to_tab+"&file_type="+e.file_type+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(n){t.updateProgress(),t.chainCallImportingFolders(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingFolders(e)})},chainCallAddingHdas:function(e){var t=this;this.added_hdas=new h.default.Folder;var n=e.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?d.default.success("Selected datasets from history added to the folder"):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?d.default.error("There was an error and no datasets were added to the folder."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&d.default.warning("Some of the datasets could not be added to the folder"),Galaxy.modal.hide(),this.added_hdas;r.when(n.save({from_hda_id:n.get("from_hda_id")})).done(function(n){Galaxy.libraries.folderListView.collection.add(n),t.updateProgress(),t.chainCallAddingHdas(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallAddingHdas(e)})},chainCallDeletingItems:function(e){var t=this;this.deleted_items=new h.default.Folder;var n=e.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?d.default.success("Selected items were deleted."):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?d.default.error("There was an error and no items were deleted. Please make sure you have sufficient permissions."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&d.default.warning("Some of the items could not be deleted. Please make sure you have sufficient permissions."),Galaxy.modal.hide(),this.deleted_items;n.destroy().done(function(i){if(Galaxy.libraries.folderListView.collection.remove(n.id),t.updateProgress(),Galaxy.libraries.folderListView.options.include_deleted){var r=null;"folder"===i.type||"LibraryFolder"===i.model_class?r=new h.default.FolderAsModel(i):"file"===i.type||"LibraryDataset"===i.model_class?r=new h.default.Item(i):(Galaxy.emit.error("Unknown library item type found.","datalibs"),Galaxy.emit.error(i.type||i.model_class,"datalibs")),Galaxy.libraries.folderListView.collection.add(r)}t.chainCallDeletingItems(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallDeletingItems(e)})},checkIncludeDeleted:function(e){e.target.checked?Galaxy.libraries.folderListView.fetchFolder({include_deleted:!0}):Galaxy.libraries.folderListView.fetchFolder({include_deleted:!1})},deleteSelectedItems:function(){var e=[],t=[],n=this.findCheckedRows();if(0===n.length)d.default.info("You must select at least one item for deletion.");else{var i=this.templateDeletingItemsProgressBar();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Deleting selected items",body:i({}),buttons:{Close:function(){Galaxy.modal.hide()}}}),this.options.chain_call_control.total_number=0,this.options.chain_call_control.failed_number=0,n.each(function(){var n=r(this).closest("tr").data("id");void 0!==n&&("F"==n.substring(0,1)?t.push(n):e.push(n))});var a=e.length+t.length;this.progressStep=100/a,this.progress=0;for(var o=[],s=e.length-1;s>=0;s--){var l=new h.default.Item({id:e[s]});o.push(l)}for(var s=t.length-1;s>=0;s--){var c=new h.default.FolderAsModel({id:t[s]});o.push(c)}this.options.chain_call_control.total_number=a,this.chainCallDeletingItems(o)}},showLocInfo:function(){var e=null,t=this;null!==Galaxy.libraries.libraryListView?(e=Galaxy.libraries.libraryListView.collection.get(this.options.parent_library_id),this.showLocInfoModal(e)):(e=new h.default.Library({id:this.options.parent_library_id}),e.fetch({success:function(){t.showLocInfoModal(e)},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}}))},showLocInfoModal:function(e){var t=this,n=this.templateLocInfoInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Location Details",body:n({library:e,options:t.options}),buttons:{Close:function(){Galaxy.modal.hide()}}})},showImportModal:function(e){switch(e.source){case"history":this.addFilesFromHistoryModal();break;case"importdir":this.importFilesFromGalaxyFolderModal({source:"importdir"});break;case"path":this.importFilesFromPathModal();break;case"userdir":this.importFilesFromGalaxyFolderModal({source:"userdir"});break;default:Galaxy.libraries.library_router.back(),d.default.error("Invalid import source.")}},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many items per page do you want to see?",Galaxy.libraries.preferences.get("folder_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({folder_page_size:parseInt(t)}),Galaxy.libraries.folderListView.render({id:this.options.id,show_page:1}))},findCheckedRows:function(){return r("#folder_list_body").find(":checked")},templateToolBar:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<form class="form-inline" role="form">',"<span><strong>DATA LIBRARIES</strong></span>",'<span class="library-paginator folder-paginator"></span>','<div class="checkbox toolbar-item logged-dataset-manipulation" style="height: 20px; display:none;">',"<label>",'<input id="include_deleted_datasets_chk" type="checkbox">include deleted</input>',"</label>","</div>",'<button style="display:none;" data-toggle="tooltip" data-placement="top" title="Create New Folder" id="toolbtn_create_folder" class="btn btn-default primary-button add-library-items toolbar-item" type="button">','<span class="fa fa-plus"></span><span class="fa fa-folder"></span>',"</button>","<% if(mutiple_add_dataset_options) { %>",'<div class="btn-group add-library-items" style="display:none;">','<button title="Add Datasets to Current Folder" id="" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">','<span class="fa fa-plus"></span><span class="fa fa-file"></span><span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#folders/<%= id %>/import/history"> from History</a></li>',"<% if(Galaxy.config.user_library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/userdir"> from User Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li class="divider"></li>','<li class="dropdown-header">Admins only</li>',"<% if(Galaxy.config.library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/importdir">from Import Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li><a href="#folders/<%= id %>/import/path">from Path</a></li>',"<% } %>","<% } %>","</ul>","</div>","<% } else { %>",'<a  data-placement="top" title="Add Datasets to Current Folder" style="display:none;" class="btn btn-default add-library-items" href="#folders/<%= id %>/import/history" role="button">','<span class="fa fa-plus"></span><span class="fa fa-file"></span>',"</a>","<% } %>",'<button data-toggle="tooltip" data-placement="top" title="Import selected datasets into history" id="toolbtn_bulk_import" class="primary-button dataset-manipulation" style="margin-left: 0.5em; display:none;" type="button">','<span class="fa fa-book"></span>',"&nbsp;to History","</button>",'<div class="btn-group dataset-manipulation" style="margin-left: 0.5em; display:none; ">','<button title="Download selected items as archive" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">','<span class="fa fa-download"></span> Download <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#/folders/<%= id %>/download/tgz">.tar.gz</a></li>','<li><a href="#/folders/<%= id %>/download/tbz">.tar.bz</a></li>','<li><a href="#/folders/<%= id %>/download/zip">.zip</a></li>',"</ul>","</div>",'<button data-toggle="tooltip" data-placement="top" title="Mark selected items deleted" id="toolbtn_bulk_delete" class="primary-button logged-dataset-manipulation" style="margin-left: 0.5em; display:none; " type="button">','<span class="fa fa-times"></span> Delete</button>','<button data-id="<%- id %>" data-toggle="tooltip" data-placement="top" title="Show location details" class="primary-button toolbtn-show-locinfo" style="margin-left: 0.5em;" type="button">','<span class="fa fa-info-circle"></span>',"&nbsp;Details","</button>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/folder-contents/" target="_blank">','<button class="primary-button" type="button">','<span class="fa fa-question-circle"></span>',"&nbsp;Help","</button>","</a>","</span>","</div>","</form>",'<div id="folder_items_element">',"</div>",'<div class="folder-paginator paginator-bottom"></div>',"</div>"].join(""))},templateLocInfoInModal:function(){return i.template(["<div>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">library</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>",'<td><%- library.get("name") %></td>',"</tr>",'<% if(library.get("description") !== "") { %>',"<tr>","<td>description</td>",'<td><%- library.get("description") %></td>',"</tr>","<% } %>",'<% if(library.get("synopsis") !== "") { %>',"<tr>","<td>synopsis</td>",'<td><%- library.get("synopsis") %></td>',"</tr>","<% } %>",'<% if(library.get("create_time_pretty") !== "") { %>',"<tr>","<td>created</td>",'<td><span title="<%- library.get("create_time") %>"><%- library.get("create_time_pretty") %></span></td>',"</tr>","<% } %>","<tr>","<td>id</td>",'<td><%- library.get("id") %></td>',"</tr>","</tbody>","</table>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">folder</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>","<td><%- options.folder_name %></td>","</tr>",'<% if(options.folder_description !== "") { %>',"<tr>","<td>description</td>","<td><%- options.folder_description %></td>","</tr>","<% } %>","<tr>","<td>id</td>","<td><%- options.id %></td>","</tr>","</tbody>","</table>","</div>"].join(""))},templateNewFolderInModal:function(){return i.template(['<div id="new_folder_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">',"</form>","</div>"].join(""))},templateBulkImportInModal:function(){return i.template(["<div>",'<div class="library-modal-item">',"Select history: ",'<select id="dataset_import_bulk" name="dataset_import_bulk" style="width:50%; margin-bottom: 1em; " autofocus>',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>",'<div class="library-modal-item">',"or create new: ",'<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;">',"</input>","</div>","</div>"].join(""))},templateImportIntoHistoryProgressBar:function(){return i.template(['<div class="import_text">',"Importing selected items to history <b><%= _.escape(history_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateAddingDatasetsProgressBar:function(){return i.template(['<div class="import_text">',"Adding selected datasets to library folder <b><%= _.escape(folder_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateDeletingItemsProgressBar:function(){return i.template(['<div class="import_text">',"</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateBrowserModal:function(){return i.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-files-message">All files you select will be imported into the current folder ignoring their folder structure.</div>','<div class="alert alert-info jstree-folders-message" style="display:none;">All files within the selected folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom:1em;">','<label title="Switch to selecting files" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-folders" checked="checked"> Choose Files',"</label>",'<label title="Switch to selecting folders" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-files"> Choose Folders',"</label>","</div>",'<div style="margin-bottom:1em;">','<label class="checkbox-inline jstree-preserve-structure" style="display:none;">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<button title="Select all files" type="button" class="button primary-button libimport-select-all">',"Select all","</button>",'<button title="Select no files" type="button" class="button primary-button libimport-select-none">',"Unselect all","</button>","<hr />",'<div id="jstree_browser">',"</div>","<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<br>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateImportPathModal:function(){return i.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-folders-message">All files within the given folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom: 0.5em;">','<label class="checkbox-inline">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>","<br>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<textarea id="import_paths" class="form-control" rows="5" placeholder="Absolute paths (or paths relative to Galaxy root) separated by newline" autofocus></textarea>',"<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateAddFilesFromHistory:function(){return i.template(['<div id="add_files_modal">',"<div>","1.&nbsp;Select history:&nbsp;",'<select id="dataset_add_bulk" name="dataset_add_bulk" style="width:66%; "> ',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>","<br/>",'<div id="selected_history_content">',"</div>","</div>"].join(""))},templateHistoryContents:function(){return i.template(["<p>2.&nbsp;Choose the datasets to import:</p>","<div>",'<button title="Select all datasets" type="button" class="button primary-button history-import-select-all">',"Select all","</button>",'<button title="Select all datasets" type="button" class="button primary-button history-import-unselect-all">',"Unselect all","</button>","</div>","<br>","<ul>","<% _.each(history_contents, function(history_item) { %>",'<% if (history_item.get("deleted") != true ) { %>','<% var item_name = history_item.get("name") %>','<% if (history_item.get("type") === "collection") { %>','<% var collection_type = history_item.get("collection_type") %>','<% if (collection_type === "list") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">',"<label>",'<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection)',"</label>","</li>","<% } else { %>",'<li><input style="margin: 0;" type="checkbox" onclick="return false;" disabled="disabled">','<span title="You can convert this collection into a collection of type list using the Collection Tools">','<%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection of type <%= _.escape(collection_type) %> not supported.)',"</span>","</li>","<% } %>",'<% } else if (history_item.get("visible") === true && history_item.get("state") === "ok") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">','<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %>',"</label>","</li>","<% } %>","<% } %>","<% }); %>","</ul>"].join(""))},templatePaginator:function(){return i.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#folders/<%= id %>/page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#folders/<%= id %>/page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- items_shown %> items shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- folder_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_items_count %> total","</span>"].join(""))}});t.default={FolderToolbarView:_}}).call(t,n(2),n(1),n(0),n(0))},304:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(13),c=a(l),d=n(10),u=a(d),h=e.View.extend({el:"#center",model:null,options:{},events:{"click .toolbtn_save_permissions":"savePermissions"},initialize:function(e){this.options=i.extend(this.options,e),this.options.id&&this.fetchLibrary()},fetchLibrary:function(e){this.options=i.extend(this.options,e),this.model=new c.default.Library({id:this.options.id});var t=this;this.model.fetch({success:function(){t.options.show_permissions&&t.showPermissions()},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):s.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},showPermissions:function(e){this.options=i.extend(this.options,e),r(".tooltip").remove(),void 0!==this.options.fetched_permissions&&(0===this.options.fetched_permissions.access_library_role_list.length?this.model.set({is_unrestricted:!0}):this.model.set({is_unrestricted:!1}));var t=!1;Galaxy.user&&(t=Galaxy.user.isAdmin());var n=this.templateLibraryPermissions();this.$el.html(n({library:this.model,is_admin:t}));var a=this;r.get(Galaxy.root+"api/libraries/"+a.id+"/permissions?scope=current").done(function(e){a.prepareSelectBoxes({fetched_permissions:e})}).fail(function(){s.default.error("An error occurred while attempting to fetch library permissions.")}),r("#center [data-toggle]").tooltip(),r("#center").css("overflow","auto")},_serializeRoles:function(e){for(var t=[],n=0;n<e.length;n++)t.push(e[n][1]+":"+e[n][0]);return t},prepareSelectBoxes:function(e){this.options=i.extend(this.options,e);var t=this.options.fetched_permissions,n=this,r=this._serializeRoles(t.access_library_role_list),a=this._serializeRoles(t.add_library_item_role_list),o=this._serializeRoles(t.manage_library_role_list),s=this._serializeRoles(t.modify_library_role_list);n.accessSelectObject=new u.default.View(this._createSelectOptions(this,"access_perm",r,!0)),n.addSelectObject=new u.default.View(this._createSelectOptions(this,"add_perm",a,!1)),n.manageSelectObject=new u.default.View(this._createSelectOptions(this,"manage_perm",o,!1)),n.modifySelectObject=new u.default.View(this._createSelectOptions(this,"modify_perm",s,!1))},_createSelectOptions:function(e,t,n,i){return i=!0===i&&i,{minimumInputLength:0,css:t,multiple:!0,placeholder:"Click to select a role",container:e.$el.find("#"+t),ajax:{url:Galaxy.root+"api/libraries/"+e.id+"/permissions?scope=available&is_library_access="+i,dataType:"json",quietMillis:100,data:function(e,t){return{q:e,page_limit:10,page:t}},results:function(e,t){var n=10*t<e.total;return{results:e.roles,more:n}}},formatResult:function(e){return e.name+" type: "+e.type},formatSelection:function(e){return e.name},initSelection:function(e,t){var n=[];r(e.val().split(",")).each(function(){var e=this.split(":");n.push({id:e[0],name:e[1]})}),t(n)},initialData:n,dropdownCssClass:"bigdrop"}},makeDatasetPrivate:function(){var e=this;r.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=make_private").done(function(t){e.model.set({is_unrestricted:!1}),e.showPermissions({fetched_permissions:t}),s.default.success("The dataset is now private to you.")}).fail(function(){s.default.error("An error occurred while attempting to make dataset private.")})},removeDatasetRestrictions:function(){var e=this;r.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=remove_restrictions").done(function(t){e.model.set({is_unrestricted:!0}),e.showPermissions({fetched_permissions:t}),s.default.success("Access to this dataset is now unrestricted.")}).fail(function(){s.default.error("An error occurred while attempting to make dataset unrestricted.")})},_extractIds:function(e){for(var t=[],n=e.length-1;n>=0;n--)t.push(e[n].id);return t},savePermissions:function(e){var t=this,n=this._extractIds(this.accessSelectObject.$el.select2("data")),i=this._extractIds(this.addSelectObject.$el.select2("data")),a=this._extractIds(this.manageSelectObject.$el.select2("data")),o=this._extractIds(this.modifySelectObject.$el.select2("data"));r.post(Galaxy.root+"api/libraries/"+t.id+"/permissions?action=set_permissions",{"access_ids[]":n,"add_ids[]":i,"manage_ids[]":a,"modify_ids[]":o}).done(function(e){t.showPermissions({fetched_permissions:e}),s.default.success("Permissions saved.")}).fail(function(){s.default.error("An error occurred while attempting to set library permissions.")})},templateLibraryPermissions:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<a href="#">','<button data-toggle="tooltip" data-placement="top" title="Go back to the list of Libraries" class="btn btn-default primary-button" type="button">','<span class="fa fa-list"/>',"&nbsp;Libraries","</button>","</a>","</div>","<h1>",'Library: <%= _.escape(library.get("name")) %>',"</h1>",'<div class="alert alert-warning">',"<% if (is_admin) { %>","You are logged in as an <strong>administrator</strong> therefore you can manage any library on this Galaxy instance. Please make sure you understand the consequences.","<% } else { %>","You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.","<% }%>","</div>",'<div class="dataset_table">',"<h2>Library permissions</h2>","<h4>Roles that can access the library</h4>",'<div id="access_perm" class="access_perm roles-selection"/>','<div class="alert alert-info roles-selection">',"User with <strong>any</strong> of these roles can access this library. If there are no access roles set on the library it is considered <strong>unrestricted</strong>.","</div>","<h4>Roles that can manage permissions on this library</h4>",'<div id="manage_perm" class="manage_perm roles-selection"/>','<div class="alert alert-info roles-selection">',"User with <strong>any</strong> of these roles can manage permissions on this library (includes giving access).","</div>","<h4>Roles that can add items to this library</h4>",'<div id="add_perm" class="add_perm roles-selection"/>','<div class="alert alert-info roles-selection">',"User with <strong>any</strong> of these roles can add items to this library (folders and datasets).","</div>","<h4>Roles that can modify this library</h4>",'<div id="modify_perm" class="modify_perm roles-selection"/>','<div class="alert alert-info roles-selection">',"User with <strong>any</strong> of these roles can modify this library (name, synopsis, etc.).","</div>",'<button data-toggle="tooltip" data-placement="top" title="Save modifications made on this page" class="btn btn-default toolbtn_save_permissions primary-button" type="button">','<span class="fa fa-floppy-o"/>',"&nbsp;Save","</button>","</div>","</div>"].join(""))}});t.default={LibraryView:h}}).call(t,n(2),n(1),n(0))},305:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(13),c=a(l),d=n(10),u=a(d),h=e.View.extend({el:"#center",model:null,options:{},events:{"click .toolbtn_save_permissions":"savePermissions"},initialize:function(e){this.options=i.extend(this.options,e),this.options.id&&this.fetchFolder()},fetchFolder:function(e){this.options=i.extend(this.options,e),this.model=new c.default.FolderAsModel({id:this.options.id});var t=this;this.model.fetch({success:function(){t.options.show_permissions&&t.showPermissions()},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):s.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},showPermissions:function(e){this.options=i.extend(this.options,e),r(".tooltip").remove();var t=!1;Galaxy.user&&(t=Galaxy.user.isAdmin());var n=this.templateFolderPermissions();this.$el.html(n({folder:this.model,is_admin:t}));var a=this;r.get(Galaxy.root+"api/folders/"+a.id+"/permissions?scope=current").done(function(e){a.prepareSelectBoxes({fetched_permissions:e})}).fail(function(){s.default.error("An error occurred while attempting to fetch folder permissions.")}),r("#center [data-toggle]").tooltip(),r("#center").css("overflow","auto")},_serializeRoles:function(e){for(var t=[],n=0;n<e.length;n++)t.push(e[n][1]+":"+e[n][0]);return t},prepareSelectBoxes:function(e){this.options=i.extend(this.options,e);var t=this.options.fetched_permissions,n=this,r=this._serializeRoles(t.add_library_item_role_list),a=this._serializeRoles(t.manage_folder_role_list),o=this._serializeRoles(t.modify_folder_role_list);n.addSelectObject=new u.default.View(this._createSelectOptions(this,"add_perm",r,!1)),n.manageSelectObject=new u.default.View(this._createSelectOptions(this,"manage_perm",a,!1)),n.modifySelectObject=new u.default.View(this._createSelectOptions(this,"modify_perm",o,!1))},_createSelectOptions:function(e,t,n){return{minimumInputLength:0,css:t,multiple:!0,placeholder:"Click to select a role",container:e.$el.find("#"+t),ajax:{url:Galaxy.root+"api/folders/"+e.id+"/permissions?scope=available",dataType:"json",quietMillis:100,data:function(e,t){return{q:e,page_limit:10,page:t}},results:function(e,t){var n=10*t<e.total;return{results:e.roles,more:n}}},formatResult:function(e){return e.name+" type: "+e.type},formatSelection:function(e){return e.name},initSelection:function(e,t){var n=[];r(e.val().split(",")).each(function(){var e=this.split(":");n.push({id:e[0],name:e[1]})}),t(n)},initialData:n.join(","),dropdownCssClass:"bigdrop"}},_extractIds:function(e){for(var t=[],n=e.length-1;n>=0;n--)t.push(e[n].id);return t},savePermissions:function(e){var t=this,n=this._extractIds(this.addSelectObject.$el.select2("data")),i=this._extractIds(this.manageSelectObject.$el.select2("data")),a=this._extractIds(this.modifySelectObject.$el.select2("data"));r.post(Galaxy.root+"api/folders/"+t.id+"/permissions?action=set_permissions",{"add_ids[]":n,"manage_ids[]":i,"modify_ids[]":a}).done(function(e){t.showPermissions({fetched_permissions:e}),s.default.success("Permissions saved.")}).fail(function(){s.default.error("An error occurred while attempting to set folder permissions.")})},templateFolderPermissions:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<a href="#/folders/<%= folder.get("parent_id") %>">','<button data-toggle="tooltip" data-placement="top" title="Go back to the parent folder" class="btn btn-default primary-button" type="button">','<span class="fa fa-caret-left fa-lg"/>',"&nbsp;Parent folder","</button>","</a>","</div>","<h1>",'Folder: <%= _.escape(folder.get("name")) %>',"</h1>",'<div class="alert alert-warning">',"<% if (is_admin) { %>","You are logged in as an <strong>administrator</strong> therefore you can manage any folder on this Galaxy instance. Please make sure you understand the consequences.","<% } else { %>","You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.","<% }%>","</div>",'<div class="dataset_table">',"<h2>Folder permissions</h2>","<h4>","Roles that can manage permissions on this folder","</h4>",'<div id="manage_perm" class="manage_perm roles-selection"/>','<div class="alert alert-info roles-selection">',"User with <strong>any</strong> of these roles can manage permissions on this folder.","</div>","<h4>","Roles that can add items to this folder","</h4>",'<div id="add_perm" class="add_perm roles-selection"/>','<div class="alert alert-info roles-selection">',"User with <strong>any</strong> of these roles can add items to this folder (folders and datasets).","</div>","<h4>","Roles that can modify this folder","</h4>",'<div id="modify_perm" class="modify_perm roles-selection"/>','<div class="alert alert-info roles-selection">',"User with <strong>any</strong> of these roles can modify this folder (name, etc.).","</div>",'<button data-toggle="tooltip" data-placement="top" title="Save modifications" class="btn btn-default toolbtn_save_permissions primary-button" type="button">','<span class="fa fa-floppy-o"/>',"&nbsp;Save","</button>","</div>","</div>"].join(""))}});t.default={FolderView:h}}).call(t,n(2),n(1),n(0))},306:function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(307),a=i(r),o=n(308),s=i(o),l=n(309),c=i(l),d=n(310),u=i(d),h=n(311),f=i(h),p=n(312),_=i(p),g=n(313),m=i(g),v=e.Router.extend({initialize:function(){this.routesHit=0,e.history.on("route",function(){this.routesHit++},this),this.bind("route",this.trackPageview)},routes:{"":"toolsheds",sheds:"toolsheds",queue:"queue",workflows:"workflows","status/r/:repositories":"status",status:"status","categories/s/:tool_shed":"categories","category/s/:tool_shed/c/:cateory_id":"repositories","repository/s/:tool_shed/r/:repository_id":"repository"},back:function(){this.routesHit>1?window.history.back():this.navigate("#",{trigger:!0,replace:!0})}}),y=e.View.extend({app_config:{known_views:["toolsheds","queue","status","categories","repositories","repoository"]},initialize:function(){Galaxy.admintoolshedapp=this,this.admin_toolshed_router=new v,this.admin_toolshed_router.on("route:queue",function(){Galaxy.admintoolshedapp.adminRepoQueueView?Galaxy.admintoolshedapp.adminRepoQueueView.reDraw():Galaxy.admintoolshedapp.adminRepoQueueView=new f.default.RepoQueueView}),this.admin_toolshed_router.on("route:toolsheds",function(){Galaxy.admintoolshedapp.adminShedListView?Galaxy.admintoolshedapp.adminShedListView.reDraw():Galaxy.admintoolshedapp.adminShedListView=new a.default.ShedListView}),this.admin_toolshed_router.on("route:categories",function(e){Galaxy.admintoolshedapp.adminShedCategoriesView?Galaxy.admintoolshedapp.adminShedCategoriesView.reDraw({tool_shed:e.replace(/\//g,"%2f")}):Galaxy.admintoolshedapp.adminShedCategoriesView=new 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o=n(17),s=a(o),l=n(127),c=(a(l),n(3)),d=a(c),u=n(8),h=a(u),f=n(11),p=a(f),_=n(18),g=a(_),m=e.View.extend({el:"#center",initialize:function(e){this.options=i.defaults(this.options||{},this.defaults),this.model=new s.default.RepositoryCollection,this.listenTo(this.model,"sync",this.render);var t=e.tool_shed.replace(/\//g,"%2f");this.model.url+="?tool_shed_url="+t+"&repository_id="+e.repository_id,this.model.tool_shed_url=e.tool_shed.replace(/%2f/g,"/"),this.model.tool_shed=t,this.model.category=e.repository_id,this.model.fetch()},render:function(e){var t=this.templateRepoDetails,n=this.model.models[0];this.options={repository:n.get("repository"),tool_shed:this.model.tool_shed,queue:g.default.queueLength()};var a=Object.keys(this.options.repository.metadata).sort(function(e,t){return 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e=this;r("#changeset").on("change",function(){e.options.current_changeset=r("#changeset").find("option:selected").text(),e.options.current_metadata=e.options.repository.metadata[e.options.current_changeset],e.checkInstalled(e.options.current_metadata),e.reDraw(e.options)}),r("#tool_panel_section_select").on("change",function(){e.tpsSelection()}),r("#install_repository").on("click",function(t){r("#repository_installation");t.preventDefault();var n={};n.repositories=JSON.stringify([[r("#install_repository").attr("data-tsrid"),r("#changeset").find("option:selected").val()]]),n.tool_shed_repository_ids=JSON.stringify([r("#install_repository").attr("data-tsrid")]),n.tool_shed_url=e.model.tool_shed_url,n.install_tool_dependencies=r("#install_tool_dependencies").val(),n.install_repository_dependencies=r("#install_repository_dependencies").val(),n.install_resolver_dependencies=r("#install_resolver_dependencies").val();e.panelSelect(n);n.tool_panel_section=JSON.stringify(e.panelSelect(n)),n.shed_tool_conf=r("select[name='shed_tool_conf']").find("option:selected").val(),n.changeset=r("#changeset").find("option:selected").val();var i=r("#repository_installation").attr("action");e.prepareInstall(n,i)}),r("#queue_install").on("click",function(t){e.options.current_changeset=r("#changeset").find("option:selected").text(),e.options.current_metadata=e.options.repository.metadata[e.options.current_changeset];var 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o=n[a],s=!o.deleted&&!o.uninstalled,l=o.changeset_revision==e.changeset_revision||o.installed_changeset_revision==e.changeset_revision;o.name==e.repository.name&&o.owner==e.repository.owner&&s&&l&&(i=!0),i?(r("#install_repository").prop("disabled",!0),r("#install_repository").val("This revision is already installed")):(r("#install_repository").prop("disabled",!1),r("#install_repository").val("Install this revision"))}t.repoQueued(e)||i?(r("#queue_install").hide(),r("#queue_install").val("This revision is already in the queue")):(r("#queue_install").show(),r("#queue_install").val("Install this revision later"))})},panelSelect:function(e){var t={};return r("#tool_panel_section_select").length?e.tool_panel_section_id=r("#tool_panel_section_select").find("option:selected").val():e.new_tool_panel_section=r("#new_tool_panel_section").val(),r(".tool_panel_section_picker").each(function(){var 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%>"].join("")),templateGlobalSectionCreate:i.template(['<div id="tool_panel_section">','<div class="form-row" id="new_tps">','<input id="new_tool_panel_section" name="new_tool_panel_section" type="textfield" value="" size="40"/>','<input class="btn btn-primary" type="button" id="select_existing" value="Select existing" />','<div class="toolParamHelp" style="clear: both;">',"Add a new tool panel section to contain the installed tools (optional).","</div>","</div>","</div>"].join("")),templateGlobalSectionSelect:i.template(['<div id="tool_panel_section">','<div class="toolFormTitle">Tool Panel Section</div>','<div class="toolFormBody">','<div class="tab-pane" id="select_tps">','<select name="<%= name %>" id="<%= tps.id %>">',"<%= tps_select_options({sections: tps.sections}) %>","</select>",'<input class="btn btn-primary" type="button" id="create_new" value="Create new" />','<div class="toolParamHelp" style="clear: both;">',"Select an existing tool panel section to contain the installed tools (optional).","</div>","</div>","</div>","</div>"].join("")),templateToolSectionCreate:i.template(['<div id="new_tps_<%= tool.clean %>" data-clean="<%= tool.clean %>" class="form-row">','<input data-toolguid="<%= tool.guid %>" class="tool_panel_section_picker" size="40" name="new_tool_panel_section" id="new_tool_panel_section_<%= tool.clean %>" type="text">','<input id="per_tool_select_<%= tool.clean %>" class="btn btn-primary" data-toolguid="<%= tool.guid %>" value="Select existing" id="select_existing_<%= tool.clean %>" type="button">',"</div>"].join("")),templateToolSectionSelect:i.template(['<div id="select_tps_<%= tool.clean %>" data-clean="<%= tool.clean %>" class="tps_creator">','<select default="active" style="width: 30em;" data-toolguid="<%= tool.guid %>" class="tool_panel_section_picker" name="tool_panel_section_id" id="tool_panel_section_select_<%= tool.clean %>">',"<%= tps_select_options({sections: tps.sections}) %>","</select>",'<input id="per_tool_create_<%= 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i=e(this).offsetParent(),r=i.offset(),a=Math.max(i.width()-(n.offsetX-r.left),i.height()-(n.offsetY-r.top));e.jStorage.set("overview-size",a+"px")}),e("#close-viewport").click(function(){"0px"===e("#overview-border").css("right")?s():a()}),window.onbeforeunload=function(){if(workflow&&l.workflow.has_changes)return"There are unsaved changes to your workflow which will be lost."},this.options.workflows.length>0&&e("#left").find(".toolMenu").append(this._buildToolPanelWorkflows()),e("div.toolSectionBody").hide(),e("div.toolSectionTitle > span").wrap("<a href='#'></a>");var f=null;e("div.toolSectionTitle").each(function(){var t=e(this).next("div.toolSectionBody");e(this).click(function(){t.is(":hidden")?(f&&f.slideUp("fast"),f=t,t.slideDown("fast")):(t.slideUp("fast"),f=null)})}),(0,M.default)("workflow-name","workflow-name",l.urls.rename_async,"new_name"),e("#workflow-tag").click(function(){return e(".tag-area").click(),!1}),(0,M.default)("workflow-annotation","workflow-annotation",l.urls.annotate_async,"new_annotation",25,!0,4)},_buildToolPanelWorkflows:function(){var t=this,n=e('<div class="toolSectionWrapper"><div class="toolSectionTitle"><a href="#"><span>Workflows</span></a></div><div class="toolSectionBody"><div class="toolSectionBg"/></div></div>');return r.each(this.options.workflows,function(i){if(i.id!==t.options.id){var r=new k.default.ButtonIcon({icon:"fa fa-copy",cls:"ui-button-icon-plain",tooltip:(0,c.default)("Copy and insert individual steps"),onclick:function(){i.step_count<2?t.copy_into_workflow(i.id,i.name):Galaxy.modal.show({title:(0,c.default)("Warning"),body:"This will copy "+i.step_count+" new steps into your workflow.",buttons:{Cancel:function(){Galaxy.modal.hide()},Copy:function(){Galaxy.modal.hide(),t.copy_into_workflow(i.id,i.name)}}})}}),a=e("<a/>").attr("href","#").html(i.name).on("click",function(){t.add_node_for_subworkflow(i.latest_id,i.name)});n.find(".toolSectionBg").append(e("<div/>").addClass("toolTitle").append(a).append(r.$el))}}),n},copy_into_workflow:function(t){var n=this;this._workflowLoadAjax(t,{success:function(t){n.workflow.from_simple(t,!1);var i="";e.each(t.upgrade_messages,function(t,r){i+="<li>Step "+(parseInt(t,10)+1)+": "+n.workflow.nodes[t].name+"<ul>",e.each(r,function(e,t){i+="<li>"+t+"</li>"}),i+="</ul></li>"}),i?window.show_modal("Subworkflow embedded with changes","Problems were encountered loading this workflow (possibly a result of tool upgrades). Please review the following parameters and then save.<ul>"+i+"</ul>",{Continue:hide_modal}):hide_modal()},beforeSubmit:function(e){show_message("Importing workflow","progress")}})},reset:function(){this.workflow&&this.workflow.remove_all(),this.workflow=window.workflow_globals.workflow=new f.default(this,e("#canvas-container"))},scroll_to_nodes:function(){var t,n,i=e("#canvas-viewport"),r=e("#canvas-container");n=r.width()<i.width()?(i.width()-r.width())/2:0,t=r.height()<i.height()?(i.height()-r.height())/2:0,r.css({left:n,top:t})},_workflowLoadAjax:function(t,n){e.ajax(u.default.merge(n,{url:this.urls.load_workflow,data:{id:t,_:"true"},dataType:"json",cache:!1}))},_moduleInitAjax:function(e,t){var n=this;u.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:t,success:function(t){e.init_field_data(t),e.update_field_data(t),n.workflow.activate_node(e)}})},add_node_for_tool:function(e,t){var n=this.workflow.create_node("tool",t,e);this._moduleInitAjax(n,{type:"tool",tool_id:e,_:"true"})},add_node_for_subworkflow:function(e,t){var n=this.workflow.create_node("subworkflow",t,e);this._moduleInitAjax(n,{type:"subworkflow",content_id:e,_:"true"})},add_node_for_module:function(e,t){var n=this.workflow.create_node(e,t);this._moduleInitAjax(n,{type:e,_:"true"})},display_file_list:function(e){var t="<select id='node_data_list' name='node_data_list'>";for(var n in e.output_terminals)t+="<option value='"+n+"'>"+n+"</option>";return t+="</select>"},showWorkflowParameters:function(){var t=/\$\{.+?\}/g,n=[],i=e("#workflow-parameters-container"),r=e("#workflow-parameters-box"),a="",o=[];e.each(this.workflow.nodes,function(i,r){r.config_form&&r.config_form.inputs&&u.default.deepeach(r.config_form.inputs,function(e){if("string"==typeof e.value){var n=e.value.match(t);n&&(o=o.concat(n))}}),r.post_job_actions&&e.each(r.post_job_actions,function(n,i){i.action_arguments&&e.each(i.action_arguments,function(e,n){var i=n.match(t);i&&(o=o.concat(i))})}),o&&e.each(o,function(t,i){-1===e.inArray(i,n)&&n.push(i)})}),n&&0!==n.length?(e.each(n,function(e,t){a+="<div>"+t.substring(2,t.length-1)+"</div>"}),i.html(a),r.show()):(i.html(a),r.hide())},showAttributes:function(){e(".right-content").hide(),e("#edit-attributes").show()},showForm:function(t,n){var i="right-content",r=i+"-"+n.id,a=e("#"+i);if(t&&0==a.find("#"+r).length){var o=e('<div id="'+r+'" class="'+i+'"/>');if(t.node=n,t.workflow=this.workflow,t.datatypes=this.datatypes,t.icon=y.default[n.type],t.cls="ui-portlet-narrow",n){var s="tool"==n.type?"Tool":"Default";o.append(new w.default[s](t).form.$el),a.append(o)}else Galaxy.emit.debug("workflow-view::initialize()","Node not found in workflow.")}e("."+i).hide(),a.find("#"+r).show(),a.show(),a.scrollTop()},isSubType:function(e,t){return e=this.ext_to_type[e],t=this.ext_to_type[t],this.type_to_type[e]&&t in this.type_to_type[e]},prebuildNode:function(t,n,i){var r=this,a=e("<div class='toolForm toolFormInCanvas'/>"),o=e("<div class='toolFormTitle unselectable'><span class='nodeTitle'>"+n+"</div></div>");s(o.find(".nodeTitle"),t),a.append(o),a.css("left",e(window).scrollLeft()+20),a.css("top",e(window).scrollTop()+20),a.append(e("<div class='toolFormBody'></div>"));var l=new m.default(this,{element:a});l.type=t,l.content_id=i;var c="<div><img height='16' align='middle' src='"+Galaxy.root+"static/images/loading_small_white_bg.gif'/> loading tool info...</div>";a.find(".toolFormBody").append(c);var d=e("<div class='buttons' style='float: right;'></div>");d.append(e("<div/>").addClass("fa-icon-button fa fa-files-o").click(function(e){l.clone()})),d.append(e("<div/>").addClass("fa-icon-button fa fa-times").click(function(e){l.destroy()})),a.appendTo("#canvas-container");var u=e("#canvas-container").position(),h=e("#canvas-container").parent(),f=a.width(),p=a.height();return a.css({left:-u.left+h.width()/2-f/2,top:-u.top+h.height()/2-p/2}),d.prependTo(a.find(".toolFormTitle")),f+=d.width()+10,a.css("width",f),a.bind("dragstart",function(){r.workflow.activate_node(l)}).bind("dragend",function(){r.workflow.node_changed(this),r.workflow.fit_canvas_to_nodes(),r.canvas_manager.draw_overview()}).bind("dragclickonly",function(){r.workflow.activate_node(l)}).bind("drag",function(t,n){var i=e(this).offsetParent().offset(),r=n.offsetX-i.left,a=n.offsetY-i.top;e(this).css({left:r,top:a}),e(this).find(".terminal").each(function(){this.terminal.redraw()})}),l}})}).call(t,n(0),n(2),n(1))},286:function(e,t,n){"use strict";(function(e){function i(e,t){this.app=e,this.canvas_container=t,this.id_counter=0,this.nodes={},this.name=null,this.has_changes=!1,this.active_form_has_changes=!1,this.workflowOutputLabels={}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(125),a=function(e){return e&&e.__esModule?e:{default:e}}(r),o=n(7),s=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}(o);e.extend(i.prototype,{canLabelOutputWith:function(e){return!e||!(e in this.workflowOutputLabels)},registerOutputLabel:function(e){e&&(this.workflowOutputLabels[e]=!0)},unregisterOutputLabel:function(e){e&&delete this.workflowOutputLabels[e]},updateOutputLabel:function(e,t){e&&this.unregisterOutputLabel(e),this.canLabelOutputWith(t)||s.warning("Workflow contains duplicate workflow output labels "+t+". This must be fixed before it can be saved."),t&&this.registerOutputLabel(t)},attemptUpdateOutputLabel:function(e,t,n){return!!this.canLabelOutputWith(n)&&(e.labelWorkflowOutput(t,n),e.nodeView.redrawWorkflowOutputs(),!0)},create_node:function(e,t,n){var i=this.app.prebuildNode(e,t,n);return this.add_node(i),this.fit_canvas_to_nodes(),this.app.canvas_manager.draw_overview(),this.activate_node(i),i},add_node:function(e){e.id=this.id_counter,e.element.attr("id","wf-node-step-"+e.id),this.id_counter++,this.nodes[e.id]=e,this.has_changes=!0,e.workflow=this},remove_node:function(e){this.active_node==e&&this.clear_active_node(),delete this.nodes[e.id],this.has_changes=!0},remove_all:function(){var t=this;e.each(this.nodes,function(e,n){n.destroy(),t.remove_node(n)})},rectify_workflow_outputs:function(){var t=!1,n=!1;if(e.each(this.nodes,function(i,r){r.workflow_outputs&&r.workflow_outputs.length>0&&(t=!0),e.each(r.post_job_actions,function(e,t){"HideDatasetAction"===t.action_type&&(n=!0)})}),!1!==t||!1!==n){var i=this;e.each(this.nodes,function(n,r){if("tool"===r.type){var a=!1;null===r.post_job_actions&&(r.post_job_actions={},a=!0);var o=[];e.each(r.post_job_actions,function(e,t){"HideDatasetAction"==t.action_type&&o.push(e)}),o.length>0&&e.each(o,function(e,t){a=!0,delete r.post_job_actions[t]}),t&&e.each(r.output_terminals,function(e,t){if(!0==!r.isWorkflowOutput(t.name)){a=!0;var n={action_type:"HideDatasetAction",output_name:t.name,action_arguments:{}};r.post_job_actions["HideDatasetAction"+t.name]=null,r.post_job_actions["HideDatasetAction"+t.name]=n}}),i.active_node==r&&!0===a&&i.reload_active_node()}})}},to_simple:function(){var t={};return e.each(this.nodes,function(n,i){var r={};e.each(i.input_terminals,function(t,n){r[n.name]=null;var i=[];e.each(n.connectors,function(e,t){if(t.handle1){var a={id:t.handle1.node.id,output_name:t.handle1.name},o=n.attributes.input.input_subworkflow_step_id;void 0!==o&&(a.input_subworkflow_step_id=o),i[e]=a,r[n.name]=i}})});var a={};i.post_job_actions&&e.each(i.post_job_actions,function(e,t){var n={action_type:t.action_type,output_name:t.output_name,action_arguments:t.action_arguments};a[t.action_type+t.output_name]=null,a[t.action_type+t.output_name]=n}),i.workflow_outputs||(i.workflow_outputs=[]);var o={id:i.id,type:i.type,content_id:i.content_id,tool_version:i.config_form.version,tool_state:i.tool_state,errors:i.errors,input_connections:r,position:e(i.element).position(),annotation:i.annotation,post_job_actions:i.post_job_actions,uuid:i.uuid,label:i.label,workflow_outputs:i.workflow_outputs};t[i.id]=o}),{steps:t}},from_simple:function(t,n){var i=void 0===n||n,r=this,o=0;i?r.name=t.name:o=Object.keys(r.nodes).length;var s=o,l=!1;e.each(t.steps,function(t,n){var a=r.app.prebuildNode(n.type,n.name,n.content_id);i||(n.uuid=null,e.each(n.workflow_outputs,function(e,t){t.uuid=null})),a.init_field_data(n),n.position&&a.element.css({top:n.position.top,left:n.position.left}),a.id=parseInt(n.id)+o,r.nodes[a.id]=a,s=Math.max(s,parseInt(t)+o),l||(a.workflow_outputs.length>0?l=!0:e.each(a.post_job_actions||[],function(e,t){"HideDatasetAction"===t.action_type&&(l=!0)}))}),r.id_counter=s+1,e.each(t.steps,function(t,n){var i=r.nodes[parseInt(t)+o];e.each(n.input_connections,function(t,n){n&&(e.isArray(n)||(n=[n]),e.each(n,function(e,n){var s=r.nodes[parseInt(n.id)+o],l=new a.default;l.connect(s.output_terminals[n.output_name],i.input_terminals[t]),l.redraw()}))}),l&&e.each(i.output_terminals,function(t,n){if(void 0===i.post_job_actions["HideDatasetAction"+n.name]){i.addWorkflowOutput(n.name);e(i.element).find(".callout."+n.name).find("img").attr("src",Galaxy.root+"static/images/fugue/asterisk-small.png"),r.has_changes=!0}})})},check_changes_in_active_form:function(){this.active_form_has_changes&&(this.has_changes=!0,e("#right-content").find("form").submit(),this.active_form_has_changes=!1)},reload_active_node:function(){if(this.active_node){var e=this.active_node;this.clear_active_node(),this.activate_node(e)}},clear_active_node:function(){this.active_node&&(this.active_node.make_inactive(),this.active_node=null),document.activeElement.blur(),this.app.showAttributes()},activate_node:function(e){this.active_node!=e&&(this.check_changes_in_active_form(),this.clear_active_node(),this.app.showForm(e.config_form,e),e.make_active(),this.active_node=e)},node_changed:function(e,t){this.has_changes=!0,this.active_node==e&&t&&(this.check_changes_in_active_form(),this.app.showForm(e.config_form,e)),this.app.showWorkflowParameters()},layout:function(){this.check_changes_in_active_form(),this.has_changes=!0;var t={},n={};e.each(this.nodes,function(e,i){void 0===t[e]&&(t[e]=0),void 0===n[e]&&(n[e]=[])}),e.each(this.nodes,function(i,r){e.each(r.input_terminals,function(i,a){e.each(a.connectors,function(e,i){var a=i.handle1.node;t[r.id]+=1,n[a.id].push(r.id)})})});for(var i=[];;){var r=[];for(var a in t)0===t[a]&&r.push(a);if(0===r.length)break;i.push(r);for(var o in r){var s=r[o];delete t[s];for(var l in n[s])t[n[s][l]]-=1}}if(!t.length){var c=this.nodes,d=80;e.each(i,function(t,n){n.sort(function(t,n){return e(c[t].element).position().top-e(c[n].element).position().top});var i=0,r=30;e.each(n,function(t,n){var a=c[n],o=e(a.element);e(o).css({top:r,left:d}),i=Math.max(i,e(o).width()),r+=e(o).height()+30}),d+=i+80}),e.each(c,function(e,t){t.redraw()})}},bounds_for_all_nodes:function(){var t,n=1/0,i=-1/0,r=1/0,a=-1/0;return e.each(this.nodes,function(o,s){var l=e(s.element);t=l.position(),n=Math.min(n,t.left),i=Math.max(i,t.left+l.width()),r=Math.min(r,t.top),a=Math.max(a,t.top+l.width())}),{xmin:n,xmax:i,ymin:r,ymax:a}},fit_canvas_to_nodes:function(){function t(e,t){return Math.ceil(e/t)*t}function n(e,t){if(e<t||e>3*t){return-(e-(Math.ceil(e%t/t)+1)*t)}return 0}var i=this.bounds_for_all_nodes(),r=this.canvas_container.position(),a=this.canvas_container.parent(),o=n(i.xmin,100),s=n(i.ymin,100);o=Math.max(o,r.left),s=Math.max(s,r.top);var l=r.left-o,c=r.top-s,d=t(i.xmax+100,100)+o,u=t(i.ymax+100,100)+s;d=Math.max(d,-l+a.width()),u=Math.max(u,-c+a.height()),this.canvas_container.css({left:l,top:c,width:d,height:u}),this.canvas_container.children().each(function(){var t=e(this).position();e(this).css("left",t.left+o),e(this).css("top",t.top+s)})}}),t.default=i}).call(t,n(0))},287:function(e,t,n){"use strict";(function(e){function n(e,t,n){this.app=e,this.cv=t,this.cc=this.cv.find("#canvas-container"),this.overview=n,this.oc=n.find("#overview-canvas"),this.ov=n.find("#overview-viewport"),this.init_drag(),this.init_copy_paste()}function i(e){this.panel=e}Object.defineProperty(t,"__esModule",{value:!0}),e.extend(n.prototype,{init_drag:function(){var t=this,n=function(e,n){e=Math.min(e,t.cv.width()/2),e=Math.max(e,-t.cc.width()+t.cv.width()/2),n=Math.min(n,t.cv.height()/2),n=Math.max(n,-t.cc.height()+t.cv.height()/2),t.cc.css({left:e,top:n}),t.cv.css({"background-position-x":e,"background-position-y":n}),t.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new i(this)});var r,a;this.cv.bind("click",function(){document.activeElement.blur()}).bind("dragstart",function(){var n=e(this).offset(),i=t.cc.position();a=i.top-n.top,r=i.left-n.left}).bind("drag",function(e,t){n(t.offsetX+r,t.offsetY+a)}).bind("dragend",function(){t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),this.overview.click(function(e){if(t.overview.hasClass("blockaclick"))t.overview.removeClass("blockaclick");else{var i=t.cc.width(),r=t.cc.height(),a=t.oc.width(),o=t.oc.height(),s=e.pageX-t.oc.offset().left-t.ov.width()/2,l=e.pageY-t.oc.offset().top-t.ov.height()/2;n(-s/a*i,-l/o*r),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}}),this.ov.bind("drag",function(e,i){var r=t.cc.width(),a=t.cc.height(),o=t.oc.width(),s=t.oc.height(),l=i.offsetX-t.overview.offset().left,c=i.offsetY-t.overview.offset().top;n(-l/o*r,-c/s*a)}).bind("dragend",function(){t.overview.addClass("blockaclick"),t.app.workflow.fit_canvas_to_nodes(),t.draw_overview()}),e("#overview-border").bind("drag",function(n,i){var r=e(this).offsetParent(),a=r.offset(),o=Math.max(r.width()-(i.offsetX-a.left),r.height()-(i.offsetY-a.top));e(this).css({width:o,height:o}),t.draw_overview()}),e("#overview-border div").bind("drag",function(){})},init_copy_paste:function(){var e=this;document.addEventListener("copy",function(t){""===window.getSelection().toString()&&(e.app.workflow.active_node&&t.clipboardData.setData("application/json",JSON.stringify({nodeId:e.app.workflow.active_node.id})),t.preventDefault())}),document.addEventListener("paste",function(t){if(document.activeElement&&"textarea"!==document.activeElement.type&&"text"!==document.activeElement.type){var n;try{n=JSON.parse(t.clipboardData.getData("application/json")).nodeId}catch(e){}n&&e.app.workflow.nodes.hasOwnProperty(n)&&e.app.workflow.nodes[n].clone(),t.preventDefault()}})},update_viewport_overlay:function(){var e=this.cc,t=this.cv,n=this.oc,i=this.ov,r=e.width(),a=e.height(),o=n.width(),s=n.height(),l=e.position();i.css({left:-l.left/r*o,top:-l.top/a*s,width:t.width()/r*o-2,height:t.height()/a*s-2})},draw_overview:function(){var t,n,i,r,a=e("#overview-canvas"),o=a.parent().parent().width(),s=a.get(0).getContext("2d"),l=e("#canvas-container").width(),c=e("#canvas-container").height(),d=this.cv.width(),u=this.cv.height();l<d&&c<u?(i=l/d*o,r=(o-i)/2,t=c/u*o,n=(o-t)/2):l<c?(n=0,t=o,i=Math.ceil(t*l/c),r=(o-i)/2):(i=o,r=0,t=Math.ceil(i*c/l),n=(o-t)/2),a.parent().css({left:r,top:n,width:i,height:t}),a.attr("width",i),a.attr("height",t),e.each(this.app.workflow.nodes,function(n,r){s.fillStyle="#D2C099",s.strokeStyle="#D8B365",s.lineWidth=1;var a=e(r.element),o=a.position(),d=o.left/l*i,u=o.top/c*t,h=a.width()/l*i,f=a.height()/c*t;r.errors?(s.fillStyle="#FFCCCC",s.strokeStyle="#AA6666"):void 0!==r.workflow_outputs&&r.workflow_outputs.length>0&&(s.fillStyle="#E8A92D",s.strokeStyle="#E8A92D"),s.fillRect(d,u,h,f),s.strokeRect(d,u,h,f)}),this.update_viewport_overlay()}}),e.extend(i.prototype,{test:function(t,n){var i=this;clearTimeout(this.timeout);var r=t.pageX,a=t.pageY,o=e(this.panel),s=o.position(),l=o.width(),c=o.height(),d=o.parent(),u=d.width(),h=d.height(),f=d.offset(),p=f.left,_=f.top,g=p+d.width(),m=_+d.height(),v=-(l-u/2),y=-(c-h/2),b=u/2,w=h/2,x=!1,k=0;r-5<p?s.left<b&&(k=Math.min(23,b-s.left),o.css("left",s.left+k),x=!0):r+5>g?s.left>v&&(k=Math.min(23,s.left-v),o.css("left",s.left-k),x=!0):a-5<_?s.top<w&&(k=Math.min(23,w-s.top),o.css("top",s.top+k),x=!0):a+5>m&&s.top>y&&(k=Math.min(23,s.top-v),o.css("top",s.top-k+"px"),x=!0),x&&(n(),this.timeout=setTimeout(function(){i.test(t,n)},50))},stop:function(){clearTimeout(this.timeout)}}),t.default=n}).call(t,n(0))},288:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(4),s=a(o),l=n(289),c=a(l),d=e.Model.extend({initialize:function(e,t){this.app=e,this.element=t.element,this.input_terminals={},this.output_terminals={},this.errors={},this.workflow_outputs=[]},getWorkflowOutput:function(e){return i.findWhere(this.workflow_outputs,{output_name:e})},isWorkflowOutput:function(e){return void 0!==this.getWorkflowOutput(e)},removeWorkflowOutput:function(e){for(;this.isWorkflowOutput(e);)this.workflow_outputs.splice(this.getWorkflowOutput(e),1)},addWorkflowOutput:function(e,t){if(!this.isWorkflowOutput(e)){var n={output_name:e};return t&&(n.label=t),this.workflow_outputs.push(n),!0}return!1},labelWorkflowOutput:function(e,t){var n=!1,i=null;if(this.isWorkflowOutput(e)){var r=this.getWorkflowOutput(e);i=r.label,r.label=t,n=i!=t}else n=this.addWorkflowOutput(e,t);return n&&(this.app.workflow.updateOutputLabel(i,t),this.markChanged(),this.nodeView.redrawWorkflowOutputs()),n},connectedOutputTerminals:function(){return this._connectedTerminals(this.output_terminals)},_connectedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.connectors.length>0&&t.push(n)}),t},hasConnectedOutputTerminals:function(){var e=this.output_terminals;for(var t in e)if(e[t].connectors.length>0)return!0;return!1},connectedMappedInputTerminals:function(){return this._connectedMappedTerminals(this.input_terminals)},hasConnectedMappedInputTerminals:function(){var e=this.input_terminals;for(var t in e){var n=e[t];if(n.connectors.length>0&&n.isMappedOver())return!0}return!1},_connectedMappedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.mapOver().isCollection&&n.connectors.length>0&&t.push(n)}),t},mappedInputTerminals:function(){return this._mappedTerminals(this.input_terminals)},_mappedTerminals:function(e){var t=[];return r.each(e,function(e,n){n.mapOver().isCollection&&t.push(n)}),t},hasMappedOverInputTerminals:function(){var e=!1;return i.each(this.input_terminals,function(t){t.mapOver().isCollection&&(e=!0)}),e},redraw:function(){r.each(this.input_terminals,function(e,t){t.redraw()}),r.each(this.output_terminals,function(e,t){t.redraw()})},clone:function(){var e=this,t={name:this.name,label:this.label,annotation:this.annotation,post_job_actions:this.post_job_actions},n=this.app.workflow.create_node(this.type,this.name,this.content_id);s.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{type:this.type,tool_id:this.content_id,inputs:this.tool_state},success:function(i){var r=Object.assign({},i,t);n.init_field_data(r),n.update_field_data(r),e.app.workflow.activate_node(n)}})},destroy:function(){r.each(this.input_terminals,function(e,t){t.destroy()}),r.each(this.output_terminals,function(e,t){t.destroy()}),this.app.workflow.remove_node(this),r(this.element).remove()},make_active:function(){r(this.element).addClass("toolForm-active")},make_inactive:function(){var e=this.element.get(0);!function(t){t.removeChild(e),t.appendChild(e)}(e.parentNode),r(e).removeClass("toolForm-active")},init_field_data:function(e){e.type&&(this.type=e.type),this.name=e.name,this.config_form=e.config_form,this.tool_version=this.config_form&&this.config_form.version,this.tool_state=e.tool_state,this.errors=e.errors,this.tooltip=e.tooltip?e.tooltip:"",this.annotation=e.annotation,this.post_job_actions=e.post_job_actions?e.post_job_actions:{},this.label=e.label,this.uuid=e.uuid,this.workflow_outputs=e.workflow_outputs?e.workflow_outputs:[];var t=this,n=new c.default({el:this.element[0],node:t});t.nodeView=n,r.each(e.data_inputs,function(e,t){n.addDataInput(t)}),e.data_inputs.length>0&&e.data_outputs.length>0&&n.addRule(),r.each(e.data_outputs,function(e,t){n.addDataOutput(t)}),n.render(),this.app.workflow.node_changed(this,!0)},update_field_data:function(e){var t=this,n=t.nodeView,a=[];if(r.each(n.outputViews,function(t,n){var r=n.output.name,o=e.data_outputs,s=!1;i.each(o,function(e){e.name==r&&(s=!0)}),!1===s&&a.push(r)}),i.each(a,function(e){i.each(n.outputViews[e].terminalElement.terminal.connectors,function(e){e&&e.destroy()}),n.outputViews[e].remove(),delete n.outputViews[e],delete t.output_terminals[e]}),r.each(t.workflow_outputs,function(e,n){n&&!t.output_terminals[n.output_name]&&t.workflow_outputs.splice(e,1)}),r.each(e.data_outputs,function(e,i){n.outputViews[i.name]?(t.output_terminals[i.name].datatypes=i.extensions,t.output_terminals[i.name].destroyInvalidConnections()):n.addDataOutput(i)}),this.tool_state=e.tool_state,this.config_form=e.config_form,this.tool_version=this.config_form&&this.config_form.version,this.errors=e.errors,this.annotation=e.annotation,this.label=e.label,"post_job_actions"in e){var o=e.post_job_actions;this.post_job_actions=o||{}}t.nodeView.renderToolErrors();var s=n.$("div.inputs"),l=n.newInputsDiv(),c={};i.each(e.data_inputs,function(e){var n=t.nodeView.addDataInput(e,l);c[e.name]=n}),i.each(i.difference(i.values(n.terminalViews),i.values(c)),function(e){e.el.terminal.destroy()}),n.terminalViews=c,t.nodeView.render(),1==e.data_outputs.length&&"collection_type"in e.data_outputs[0]&&n.updateDataOutput(e.data_outputs[0]),s.replaceWith(l),"workflow_outputs"in e&&(this.workflow_outputs=e.workflow_outputs?e.workflow_outputs:[]),this.markChanged(),this.redraw()},error:function(e){var t=r(this.element).find(".toolFormBody");t.find("div").remove();var n="<div style='color: red; text-style: italic;'>"+e+"</div>";this.config_form=n,t.html(n),this.app.workflow.node_changed(this)},markChanged:function(){this.app.workflow.node_changed(this)}});t.default=d}).call(t,n(2),n(1),n(0))},289:function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(1),o=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}(a),s=n(290),l=r(s),c=n(292),d=r(c);t.default=e.View.extend({initialize:function(e){this.node=e.node,this.output_width=Math.max(150,this.$el.width()),this.tool_body=this.$el.find(".toolFormBody"),this.tool_body.find("div").remove(),this.newInputsDiv().appendTo(this.tool_body),this.terminalViews={},this.outputViews={}},render:function(){this.renderToolLabel(),this.renderToolErrors(),this.$el.css("width",Math.min(250,Math.max(this.$el.width(),this.output_width)))},renderToolLabel:function(){this.$(".nodeTitle").text(this.node.label||this.node.name)},renderToolErrors:function(){this.node.errors?this.$el.addClass("tool-node-error"):this.$el.removeClass("tool-node-error")},newInputsDiv:function(){return i("<div/>").addClass("inputs")},updateMaxWidth:function(e){this.output_width=Math.max(this.output_width,e)},addRule:function(){this.tool_body.append(i("<div/>").addClass("rule"))},addDataInput:function(e,t){var n=!0;t||(t=this.$(".inputs"),n=!1);var i=this.terminalViews[e.name],r="dataset_collection"==e.input_type?l.default.InputCollectionTerminalView:l.default.InputTerminalView;if(!i||i instanceof r||(i.el.terminal.destroy(),i=null),i){var a=i.el.terminal;a.update(e),a.destroyInvalidConnections()}else i=new r({node:this.node,input:e});this.terminalViews[e.name]=i;var o=i.el,s=new d.default.DataInputView({terminalElement:o,input:e,nodeView:this,skipResize:n}),c=s.$el;return t.append(c.prepend(i.terminalElements())),i},addDataOutput:function(e){var t=e.collection?l.default.OutputCollectionTerminalView:l.default.OutputTerminalView,n=new t({node:this.node,output:e}),i=new d.default.DataOutputView({output:e,terminalElement:n.el,nodeView:this});this.outputViews[e.name]=i,this.tool_body.append(i.$el.append(n.terminalElements()))},redrawWorkflowOutputs:function(){o.each(this.outputViews,function(e){e.redrawWorkflowOutput()})},updateDataOutput:function(e){this.node.output_terminals[e.name].update(e)}})}).call(t,n(2),n(0))},290:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(291),s=a(o),l=n(125),c=a(l);window.workflow_globals=window.workflow_globals||{};var d=e.View.extend({tagName:"div",className:"fa-icon-button fa fa-folder-o",initialize:function(e){this.$el.tooltip({delay:500,title:"Run tool in parallel over collection"}),this.model.bind("change",i.bind(this.render,this))},render:function(){this.model.mapOver.isCollection?this.$el.show():this.$el.hide()}}),u=d.extend({events:{click:"onClick",mouseenter:"onMouseEnter",mouseleave:"onMouseLeave"},onMouseEnter:function(e){var t=this.model;!t.terminal.connected()&&t.mapOver.isCollection&&this.$el.css("color","red")},onMouseLeave:function(e){this.$el.css("color","black")},onClick:function(e){var t=this.model;!t.terminal.connected()&&t.mapOver.isCollection&&t.terminal.resetMapping()}}),h=e.View.extend({setupMappingView:function(e){var t=new this.terminalMappingClass({terminal:e}),n=new this.terminalMappingViewClass({model:t});n.render(),e.terminalMappingView=n,this.terminalMappingView=n},terminalElements:function(){return this.terminalMappingView?[this.terminalMappingView.el,this.el]:[this.el]}}),f=h.extend({className:"terminal input-terminal",initialize:function(e){var t=e.node,n=e.input,i=n.name,r=this.terminalForInput(n);r.multiple||this.setupMappingView(r),this.el.terminal=r,r.node=t,r.name=i,t.input_terminals[i]=r},events:{dropinit:"onDropInit",dropstart:"onDropStart",dropend:"onDropEnd",drop:"onDrop",hover:"onHover"},onDropInit:function(e,t){var n=this.el.terminal;return r(t.drag).hasClass("output-terminal")&&n.canAccept(t.drag.terminal)},onDropStart:function(e,t){t.proxy.terminal&&(t.proxy.terminal.connectors[0].inner_color="#BBFFBB")},onDropEnd:function(e,t){t.proxy.terminal&&(t.proxy.terminal.connectors[0].inner_color="#FFFFFF")},onDrop:function(e,t){var n=this.el.terminal;new c.default(t.drag.terminal,n).redraw()},onHover:function(){var e=this.el,t=e.terminal;if(t.connectors.length>0){var n=r("<div class='callout'></div>").css({display:"none"}).appendTo("body").append(r("<div class='button'></div>").append(r("<div/>").addClass("fa-icon-button fa fa-times").click(function(){r.each(t.connectors,function(e,t){t&&t.destroy()}),n.remove()}))).bind("mouseleave",function(){r(this).remove()});n.css({top:r(e).offset().top-2,left:r(e).offset().left-n.width(),"padding-right":r(e).width()}).show()}}}),p=f.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:u,terminalForInput:function(e){return new s.default.InputTerminal({element:this.el,input:e})}}),_=f.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:u,terminalForInput:function(e){return new s.default.InputCollectionTerminal({element:this.el,input:e})}}),g=h.extend({className:"terminal output-terminal",initialize:function(e){var t=e.node,n=e.output,i=n.name,r=this.terminalForOutput(n);this.setupMappingView(r),this.el.terminal=r,r.node=t,r.name=i,t.output_terminals[i]=r},events:{drag:"onDrag",dragstart:"onDragStart",dragend:"onDragEnd"},onDrag:function(e,t){var n=function(){var e=r(t.proxy).offsetParent().offset(),n=t.offsetX-e.left,i=t.offsetY-e.top;r(t.proxy).css({left:n,top:i}),t.proxy.terminal.redraw(),window.workflow_globals.canvas_manager.update_viewport_overlay()};n(),r("#canvas-container").get(0).scroll_panel.test(e,n)},onDragStart:function(e,t){r(t.available).addClass("input-terminal-active"),window.workflow_globals.workflow.check_changes_in_active_form();var n=r('<div class="drag-terminal" style="position: absolute;"></div>').appendTo("#canvas-container").get(0);n.terminal=new s.default.OutputTerminal({element:n});var i=new c.default;return i.dragging=!0,i.connect(this.el.terminal,n.terminal),n},onDragEnd:function(e,t){var n=t.proxy.terminal.connectors[0];n&&n.destroy(),r(t.proxy).remove(),r(t.available).removeClass("input-terminal-active"),r("#canvas-container").get(0).scroll_panel.stop()}}),m=g.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:d,terminalForOutput:function(e){var t=e.extensions;return new s.default.OutputTerminal({element:this.el,datatypes:t})}}),v=g.extend({terminalMappingClass:s.default.TerminalMapping,terminalMappingViewClass:d,terminalForOutput:function(e){var t=e.collection_type,n=e.collection_type_source;return new s.default.OutputCollectionTerminal({element:this.el,collection_type:t,collection_type_source:n,datatypes:e.extensions})}});t.default={InputTerminalView:p,OutputTerminalView:m,InputCollectionTerminalView:_,OutputCollectionTerminalView:v}}).call(t,n(2),n(1),n(0))},291:function(e,t,n){"use strict";(function(e,n,i){function r(e){this.collectionType=e,this.isCollection=!0,this.rank=e.split(":").length}Object.defineProperty(t,"__esModule",{value:!0}),window.workflow_globals=window.workflow_globals||{};var a={isCollection:!1,canMatch:function(e){return!1},canMapOver:function(e){return!1},toString:function(){return"NullCollectionType[]"},append:function(e){return e},equal:function(e){return e===this}},o={isCollection:!0,canMatch:function(e){return a!==e},canMapOver:function(e){return!1},toString:function(){return"AnyCollectionType[]"},append:function(e){throw"Cannot append to ANY_COLLECTION_TYPE_DESCRIPTION"},equal:function(e){return e===this}};e.extend(r.prototype,{append:function(e){return e===a?this:e===o?otherCollectionType:new r(this.collectionType+":"+e.collectionType)},canMatch:function(e){return e!==a&&(e===o||e.collectionType==this.collectionType)},canMapOver:function(e){if(e===a)return!1;if(e===o)return!1;if(this.rank<=e.rank)return!1;var t=e.collectionType;return this._endsWith(this.collectionType,t)},effectiveMapOver:function(e){var t=e.collectionType;return new r(this.collectionType.substring(0,this.collectionType.length-t.length-1))},equal:function(e){return e.collectionType==this.collectionType},toString:function(){return"CollectionType["+this.collectionType+"]"},_endsWith:function(e,t){return-1!==e.indexOf(t,e.length-t.length)}});var s=n.Model.extend({initialize:function(e){this.mapOver=e.mapOver||a,this.terminal=e.terminal,this.terminal.terminalMapping=this},disableMapOver:function(){this.setMapOver(a)},setMapOver:function(e){this.mapOver=e,this.trigger("change")}}),l=n.Model.extend({initialize:function(e){this.element=e.element,this.connectors=[]},connect:function(e){this.connectors.push(e),this.node&&this.node.markChanged()},disconnect:function(t){this.connectors.splice(e.inArray(t,this.connectors),1),this.node&&(this.node.markChanged(),this.resetMappingIfNeeded())},redraw:function(){e.each(this.connectors,function(e,t){t.redraw()})},destroy:function(){e.each(this.connectors.slice(),function(e,t){t.destroy()})},destroyInvalidConnections:function(){i.each(this.connectors,function(e){e&&e.destroyIfInvalid()})},setMapOver:function(e){this.multiple||this.mapOver().equal(e)||(this.terminalMapping.setMapOver(e),i.each(this.node.output_terminals,function(t){t.setMapOver(e)}))},mapOver:function(){return this.terminalMapping?this.terminalMapping.mapOver:a},isMappedOver:function(){return this.terminalMapping&&this.terminalMapping.mapOver.isCollection},resetMapping:function(){this.terminalMapping.disableMapOver()},resetMappingIfNeeded:function(){}}),c=l.extend({initialize:function(e){l.prototype.initialize.call(this,e),this.datatypes=e.datatypes},resetMappingIfNeeded:function(){this.node.hasConnectedOutputTerminals()||this.node.hasConnectedMappedInputTerminals()||i.each(this.node.mappedInputTerminals(),function(e){e.resetMappingIfNeeded()}),!this.node.hasMappedOverInputTerminals()&&this.resetMapping()},resetMapping:function(){this.terminalMapping.disableMapOver(),i.each(this.connectors,function(e){var t=e.handle2;t&&(t.resetMappingIfNeeded(),e.destroyIfInvalid())})}}),d=l.extend({initialize:function(e){l.prototype.initialize.call(this,e),this.update(e.input)},canAccept:function(e){return!this._inputFilled()&&this.attachable(e)},resetMappingIfNeeded:function(){this.mapOver().isCollection&&((this.node.hasConnectedMappedInputTerminals()||!this.node.hasConnectedOutputTerminals())&&this.resetMapping())},resetMapping:function(){this.terminalMapping.disableMapOver(),this.node.hasMappedOverInputTerminals()||i.each(this.node.output_terminals,function(e){e.resetMapping()})},connected:function(){return 0!==this.connectors.length},_inputFilled:function(){var e;return this.connected()?this.multiple?this._collectionAttached()?inputsFilled=!0:e=!1:e=!0:e=!1,e},_collectionAttached:function(){if(this.connected()){var e=this.connectors[0].handle1;return!!e&&!!(e.isCollection||e.isMappedOver()||e.datatypes.indexOf("input_collection")>0)}return!1},_mappingConstraints:function(){if(!this.node)return[];var e=this.mapOver();if(e.isCollection)return[e];var t=[];return this.node.hasConnectedOutputTerminals()?t.push(i.first(i.values(this.node.output_terminals)).mapOver()):i.each(this.node.connectedMappedInputTerminals(),function(e){t.push(e.mapOver())}),t},_producesAcceptableDatatype:function(e){for(var t in this.datatypes){var n=this.datatypes[t];if("input"==n)return!0;var i=new Array;if(i=i.concat(e.datatypes),e.node.post_job_actions)for(var r in e.node.post_job_actions){var a=e.node.post_job_actions[r];"ChangeDatatypeAction"!=a.action_type||""!=a.output_name&&a.output_name!=e.name||!a.action_arguments||i.push(a.action_arguments.newtype)}for(var o in i){var s=i[o];if("input"==s||"_sniff_"==s||"input_collection"==s||window.workflow_globals.app.isSubType(i[o],n))return!0}}return!1},_otherCollectionType:function(e){var t=a;e.isCollection&&(t=e.collectionType);var n=e.mapOver();return n.isCollection&&(t=n.append(t)),t}}),u=d.extend({update:function(e){this.datatypes=e.extensions,this.multiple=e.multiple,this.collection=!1},connect:function(e){d.prototype.connect.call(this,e);var t=e.handle1;if(t){var n=this._otherCollectionType(t);n.isCollection&&this.setMapOver(n)}},attachable:function(e){var t=this._otherCollectionType(e),n=this.mapOver();if(t.isCollection){if(this.multiple)return!(this.connected()&&!this._collectionAttached())&&(1==t.rank&&this._producesAcceptableDatatype(e));if(n.isCollection&&n.canMatch(t))return this._producesAcceptableDatatype(e);return!!this._mappingConstraints().every(i.bind(t.canMatch,t))&&this._producesAcceptableDatatype(e)}return!n.isCollection&&this._producesAcceptableDatatype(e)}}),h=d.extend({update:function(e){this.multiple=!1,this.collection=!0,this.datatypes=e.extensions;var t=[];e.collection_types?i.each(e.collection_types,function(e){t.push(new r(e))}):t.push(o),this.collectionTypes=t},connect:function(e){d.prototype.connect.call(this,e);var t=e.handle1;if(t){var n=this._effectiveMapOver(t);this.setMapOver(n)}},_effectiveMapOver:function(e){var t=this.collectionTypes,n=this._otherCollectionType(e);if(!i.some(t,function(e){return e.canMatch(n)}))for(var r in t){var o=t[r];if(n.canMapOver(o)){var s=n.effectiveMapOver(o);if(s!=a)return s}}return a},_effectiveCollectionTypes:function(){var e=this.mapOver();return i.map(this.collectionTypes,function(t){return e.append(t)})},attachable:function(e){var t=this._otherCollectionType(e);if(t.isCollection){var n=this._effectiveCollectionTypes(),r=this.mapOver();if(i.some(n,function(e){return e.canMatch(t)}))return this._producesAcceptableDatatype(e);if(r.isCollection)return!1;if(i.some(this.collectionTypes,function(e){return t.canMapOver(e)})){var a=this._effectiveMapOver(e);if(!a.isCollection)return!1;if(this._mappingConstraints().every(a.canMatch))return this._producesAcceptableDatatype(e)}}return!1}}),f=l.extend({initialize:function(e){if(l.prototype.initialize.call(this,e),this.datatypes=e.datatypes,e.collection_type)this.collectionType=new r(e.collection_type);else{e.collection_type_source||console.log("Warning: No collection type or collection type source defined."),this.collectionType=o}this.isCollection=!0},update:function(e){var t;if(e.collection_type)t=new r(e.collection_type);else{e.collection_type_source||console.log("Warning: No collection type or collection type source 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a({label:i,output:t,node:r});this.calloutView=o,this.$el.append(o.el),this.$el.hover(function(){o.hoverImage()},function(){o.resetImage()})}this.$el.css({position:"absolute",left:-1e3,top:-1e3,display:"none"}),n("body").append(this.el),this.nodeView.updateMaxWidth(this.$el.outerWidth()+17),this.$el.css({position:"",left:"",top:"",display:""}).detach()},redrawWorkflowOutput:function(){this.calloutView&&this.calloutView.resetImage()}}),a=e.View.extend({tagName:"div",initialize:function(e){this.label=e.label,this.node=e.node,this.output=e.output;var t=this,i=this.node;this.$el.attr("class","callout "+this.label).css({display:"none"}).append(n("<div class='buttons'></div>").append(n("<img/>").attr("src",Galaxy.root+"static/images/fugue/asterisk-small-outline.png").click(function(){var 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p.default(h.default.merge(e,{onchange:function(){h.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{id:n.id,type:n.type,content_id:n.content_id,inputs:t.form.data.create()},success:function(e){n.update_field_data(e)}})}})),a(this.form),this.form.render()}}),v=e.View.extend({initialize:function(e){var t=this,n=e.node;this.form=new g.default(h.default.merge(e,{text_enable:"Set in Advance",text_disable:"Set at Runtime",narrow:!0,initial_errors:!0,cls:"ui-portlet-narrow",initialmodel:function(e,n){t._customize(n),e.resolve()},buildmodel:function(e,t){t.model.get("postchange")(e,t)},postchange:function(e,r){var a=r.model.attributes,o={tool_id:a.id,tool_version:a.version,type:"tool",inputs:i.extend(!0,{},r.data.create())};Galaxy.emit.debug("tool-form-workflow::postchange()","Sending current 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t=this.model.get("config");t.get("arc_dataset_height").on("change:value",this.update_track_bounds,this),t.get("track_gap").on("change:value",this.update_track_bounds,this)},get_circular_tracks:function(){return this.model.get("drawables").filter(function(e){return"DiagonalHeatmapTrack"!==e.get("track_type")})},get_chord_tracks:function(){return this.model.get("drawables").filter(function(e){return"DiagonalHeatmapTrack"===e.get("track_type")})},get_tracks_bounds:function(){var e=this.get_circular_tracks(),t=this.model.get("config").get_value("arc_dataset_height"),n=this.model.get("config").get_value("track_gap"),i=Math.min(this.$el.width(),this.$el.height())-20,r=i/2-e.length*(t+n)+n-this.label_arc_height,a=u.range(r,i/2,t+n);return c.map(a,function(e){return[e,e+t]})},render:function(){var e=this,t=e.$el.width(),n=e.$el.height(),i=this.get_circular_tracks(),r=this.get_chord_tracks(),a=e.model.get("config").get_value("total_gap"),o=this.get_tracks_bounds(),s=u.select(e.$el[0]).append("svg").attr("width",t).attr("height",n).attr("pointer-events","all").append("svg:g").call(u.behavior.zoom().on("zoom",function(){var t=u.event.scale;s.attr("transform","translate("+u.event.translate+") scale("+t+")"),e.scale!==t&&(e.zoom_drag_timeout&&clearTimeout(e.zoom_drag_timeout),e.zoom_drag_timeout=setTimeout(function(){},400))})).attr("transform","translate("+t/2+","+n/2+")").append("svg:g").attr("class","tracks");this.circular_views=i.map(function(t,n){var i=new S({el:s.append("g")[0],track:t,radius_bounds:o[n],genome:e.genome,total_gap:a});return i.render(),i}),this.chords_views=r.map(function(t){var n=new T({el:s.append("g")[0],track:t,radius_bounds:o[0],genome:e.genome,total_gap:a});return n.render(),n});var l=this.circular_views[this.circular_views.length-1].radius_bounds[1],c=[l,l+this.label_arc_height];this.label_track_view=new M({el:s.append("g")[0],track:new x,radius_bounds:c,genome:e.genome,total_gap:a}),this.label_track_view.render()},add_track:function(e){var t=this.model.get("config").get_value("total_gap");if("DiagonalHeatmapTrack"===e.get("track_type")){var n=this.circular_views[0].radius_bounds,i=new T({el:u.select("g.tracks").append("g")[0],track:e,radius_bounds:n,genome:this.genome,total_gap:t});i.render(),this.chords_views.push(i)}else{var r=this.get_tracks_bounds();c.each(this.circular_views,function(e,t){e.update_radius_bounds(r[t])}),c.each(this.chords_views,function(e){e.update_radius_bounds(r[0])});var a=this.circular_views.length,o=new S({el:u.select("g.tracks").append("g")[0],track:e,radius_bounds:r[a],genome:this.genome,total_gap:t});o.render(),this.circular_views.push(o)}},remove_track:function(e,t,n){var i=this.circular_views[n.index];this.circular_views.splice(n.index,1),i.$el.remove();var r=this.get_tracks_bounds();c.each(this.circular_views,function(e,t){e.update_radius_bounds(r[t])})},update_track_bounds:function(){var e=this.get_tracks_bounds();c.each(this.circular_views,function(t,n){t.update_radius_bounds(e[n])}),c.each(this.chords_views,function(t){t.update_radius_bounds(e[0])})}}),j=e.View.extend({tagName:"g",initialize:function(e){this.bg_stroke="#ddd",this.loading_bg_fill="#ffc",this.bg_fill="#ddd",this.total_gap=e.total_gap,this.track=e.track,this.radius_bounds=e.radius_bounds,this.genome=e.genome,this.chroms_layout=this._chroms_layout(),this.data_bounds=[],this.scale=1,this.parent_elt=u.select(this.$el[0])},get_fill_color:function(){var e=this.track.get("config").get_value("block_color");return e||(e=this.track.get("config").get_value("color")),e},render:function(){var e=this.parent_elt,t=this.chroms_layout,n=u.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]),r=e.selectAll("g").data(t).enter().append("svg:g"),a=r.append("path").attr("d",n).attr("class","chrom-background").style("stroke",this.bg_stroke).style("fill",this.loading_bg_fill);a.append("title").text(function(e){return e.data.chrom});var o=this,s=o.track.get("data_manager"),l=!s||s.data_is_ready();i.when(l).then(function(){i.when(o._render_data(e)).then(function(){a.style("fill",o.bg_fill),o.render_labels()})})},render_labels:function(){},update_radius_bounds:function(e){this.radius_bounds=e;var t=u.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]);this.parent_elt.selectAll("g>path.chrom-background").transition().duration(1e3).attr("d",t),this._transition_chrom_data(),this._transition_labels()},update_scale:function(e){var t=this.scale;if(this.scale=e,!(e<=t)){var n=this,r=new b;return this.parent_elt.selectAll("path.chrom-data").filter(function(e,t){return r.is_visible(this)}).each(function(t,r){var a,o=u.select(this),s=o.attr("chrom"),l=n.genome.get_chrom_region(s),d=n.track.get("data_manager");d.can_get_more_detailed_data(l)&&(a=n.track.get("data_manager").get_more_detailed_data(l,"Coverage",0,e),i.when(a).then(function(e){o.remove(),n._update_data_bounds();var t=c.find(n.chroms_layout,function(e){return e.data.chrom===s}),i=n.get_fill_color();n._render_chrom_data(n.parent_elt,t,e).style("stroke",i).style("fill",i)}))}),n}},_transition_chrom_data:function(){var e=this.track,t=this.chroms_layout,n=this.parent_elt.selectAll("g>path.chrom-data");if(n[0].length>0){var r=this;i.when(e.get("data_manager").get_genome_wide_data(this.genome)).then(function(i){var a=c.reject(c.map(i,function(e,n){var i=null,a=r._get_path_function(t[n],e);return a&&(i=a(e.data)),i}),function(e){return 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s=t.get_fill_color();t.parent_elt.selectAll("path.chrom-data").style("stroke",s).style("fill",s),a.resolve(e)}),a},_render_chrom_data:function(e,t,n){},_get_path_function:function(e,t){},_chroms_layout:function(){var e=this.genome.get_chroms_info(),t=u.layout.pie().value(function(e){return e.len}).sort(null),n=t(e),i=2*Math.PI*this.total_gap/e.length;return c.map(n,function(e,t){var n=e.endAngle-i;return e.endAngle=n>e.startAngle?n:e.startAngle,e})}}),M=j.extend({initialize:function(e){j.prototype.initialize.call(this,e),this.innerRadius=this.radius_bounds[0],this.radius_bounds[0]=this.radius_bounds[1],this.bg_stroke="#fff",this.bg_fill="#fff",this.min_arc_len=.05},_render_data:function(e){var t=this,n=e.selectAll("g");n.selectAll("path").attr("id",function(e){return"label-"+e.data.chrom}),n.append("svg:text").filter(function(e){return 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h.default.FolderListView({id:e})}),this.library_router.on("route:folder_page",function(e,t){null===Galaxy.libraries.folderToolbarView?(Galaxy.libraries.folderToolbarView=new v.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new h.default.FolderListView({id:e,show_page:t})):Galaxy.libraries.folderListView.render({id:e,show_page:parseInt(t)})}),this.library_router.on("route:download",function(e,t){0===i("#folder_list_body").find(":checked").length?(s.default.info("You must select at least one dataset to download"),Galaxy.libraries.library_router.navigate("folders/"+e,{trigger:!0,replace:!0})):(Galaxy.libraries.folderToolbarView.download(e,t),Galaxy.libraries.library_router.navigate("folders/"+e,{trigger:!1,replace:!0}))}),this.library_router.on("route:dataset_detail",function(e,t){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new b.default.LibraryDatasetView({id:t,show_version:!1,show_permissions:!1})}),this.library_router.on("route:dataset_version",function(e,t,n){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new b.default.LibraryDatasetView({id:t,ldda_id:n,show_version:!0})}),this.library_router.on("route:dataset_permissions",function(e,t){Galaxy.libraries.datasetView&&Galaxy.libraries.datasetView.$el.unbind("click"),Galaxy.libraries.datasetView=new b.default.LibraryDatasetView({id:t,show_permissions:!0})}),this.library_router.on("route:library_permissions",function(e){Galaxy.libraries.libraryView&&Galaxy.libraries.libraryView.$el.unbind("click"),Galaxy.libraries.libraryView=new x.default.LibraryView({id:e,show_permissions:!0})}),this.library_router.on("route:folder_permissions",function(e){Galaxy.libraries.folderView&&Galaxy.libraries.folderView.$el.unbind("click"),Galaxy.libraries.folderView=new j.default.FolderView({id:e,show_permissions:!0})}),this.library_router.on("route:import_datasets",function(e,t){Galaxy.libraries.folderToolbarView&&Galaxy.libraries.folderListView?Galaxy.libraries.folderToolbarView.showImportModal({source:t}):(Galaxy.libraries.folderToolbarView=new v.default.FolderToolbarView({id:e}),Galaxy.libraries.folderListView=new h.default.FolderListView({id:e}),Galaxy.libraries.folderToolbarView.showImportModal({source:t}))}),e.history.start({pushState:!1})}});t.default={GalaxyApp:S}}).call(t,n(2),n(0))},297:function(e,t,n){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var i=function(e,t){return function(n,i){return n.get("type")===i.get("type")?n.has(e)||i.has(e)?n.has(e)?i.has(e)?n.get(e).toLowerCase()>i.get(e).toLowerCase()?"asc"===t?1:-1:i.get(e).toLowerCase()>n.get(e).toLowerCase()?"asc"===t?-1:1:0:-1:1:0:"folder"===n.get("type")?-1:1}},r=function(e,t){return function(n,i){return n.get(e).toLowerCase()>i.get(e).toLowerCase()?"asc"===t?1:-1:i.get(e).toLowerCase()>n.get(e).toLowerCase()?"asc"===t?-1:1:0}};t.default={generateFolderComparator:i,generateLibraryComparator:r}},298:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(13),c=a(l),d=n(299),u=a(d),h=e.View.extend({el:"#folder_items_element",progress:0,progressStep:1,folderContainer:null,current_sort_order:"asc",current_sort_key:"name",events:{"click #select-all-checkboxes":"selectAll","click .dataset_row":"selectClickedRow","click .folder_row":"selectClickedRow","click .sort-folder-name":"sortColumnClicked","click .sort-folder-file_ext":"sortColumnClicked","click .sort-folder-description":"sortColumnClicked","click .sort-folder-state":"sortColumnClicked"},collection:null,defaults:{include_deleted:!1,page_count:null,show_page:null},initialize:function(e){this.options=i.defaults(this.options||{},this.defaults,e),this.modal=null,this.rowViews={},this.collection=new c.default.Folder,this.listenTo(this.collection,"add",this.renderOne),this.listenTo(this.collection,"remove",this.removeOne),this.listenTo(this.collection,"sort",this.rePaint),this.listenTo(this.collection,"reset",this.rePaint),this.fetchFolder()},fetchFolder:function(e){var e=e||{};this.options.include_deleted=e.include_deleted;var t=this;this.folderContainer=new c.default.FolderContainer({id:this.options.id}),this.folderContainer.url=this.folderContainer.attributes.urlRoot+this.options.id+"/contents",this.options.include_deleted&&(this.folderContainer.url=this.folderContainer.url+"?include_deleted=true"),this.folderContainer.fetch({success:function(e){t.folder_container=e,t.render()},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):s.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(e){this.options=i.extend(this.options,e);var t=this.templateFolder();r(".tooltip").hide();var n,a=this.folderContainer.attributes.metadata.full_path;if(n=1===a.length?0:a[a.length-2][0],this.$el.html(t({path:this.folderContainer.attributes.metadata.full_path,parent_library_id:this.folderContainer.attributes.metadata.parent_library_id,id:this.options.id,upper_folder_id:n,order:this.current_sort_order})),this.options.dataset_id){var o=i.findWhere(self.rowViews,{id:this.options.dataset_id});o?o.showDatasetDetails():s.default.error("Requested dataset not found. Showing folder instead.")}else(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.paginate();r("#center [data-toggle]").tooltip(),r("#center").css("overflow","auto")},paginate:function(e){this.options=i.extend(this.options,e),(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_items_count=this.folder_container.get("folder").models.length,this.options.page_count=Math.ceil(this.options.total_items_count/Galaxy.libraries.preferences.get("folder_page_size"));var t=Galaxy.libraries.preferences.get("folder_page_size")*(this.options.show_page-1),n=null;n=this.folder_container.get("folder").models.slice(t,t+Galaxy.libraries.preferences.get("folder_page_size")),this.options.items_shown=n.length,Galaxy.libraries.preferences.get("folder_page_size")*this.options.show_page>this.options.total_items_count+Galaxy.libraries.preferences.get("folder_page_size")&&(n=[]),Galaxy.libraries.folderToolbarView.renderPaginator(this.options),this.collection.reset(n)},rePaint:function(e){this.options=i.extend(this.options,e),this.removeAllRows(),this.renderAll(),this.checkEmptiness()},addAll:function(e){i.each(e,function(e){Galaxy.libraries.folderListView.collection.add(e,{current_sort_order:!1})}),r("#center [data-toggle]").tooltip(),this.checkEmptiness(),this.postRender()},postRender:function(){var e=this.folderContainer.attributes.metadata;e.contains_file_or_folder=void 0!==this.collection.findWhere({type:"file"})||void 0!==this.collection.findWhere({type:"folder"}),Galaxy.libraries.folderToolbarView.configureElements(e)},renderAll:function(){var e=this;i.each(this.collection.models.reverse(),function(t){e.renderOne(t)}),this.postRender()},renderOne:function(e){this.options.contains_file_or_folder=!0,e.set("folder_id",this.id);var t=new u.default.FolderRowView({model:e});this.rowViews[e.get("id")]=t,this.$el.find("#first_folder_item").after(t.el)},removeOne:function(e){this.$el.find("tr").filter(function(){return r(this).data("id")&&r(this).data("id")===e.id}).remove()},removeAllRows:function(){r(".library-row").remove()},checkEmptiness:function(){0===this.$el.find(".dataset_row").length&&0===this.$el.find(".folder_row").length?this.$el.find(".empty-folder-message").show():this.$el.find(".empty-folder-message").hide()},sortColumnClicked:function(e){e.preventDefault(),this.current_sort_order="asc"===this.current_sort_order?"desc":"asc",this.current_sort_key=e.currentTarget.className.replace("sort-folder-",""),this.collection.sortFolder(this.current_sort_key,this.current_sort_order),this.renderSortIcon()},selectAll:function(e){var t=e.target.checked,n=this;r(":checkbox","#folder_list_body").each(function(){this.checked=t;var e=r(this).closest("tr");t?n.makeDarkRow(e):n.makeWhiteRow(e)})},selectClickedRow:function(e){var t,n,i="";t=r(e.target).closest("tr"),"input"===e.target.localName?(i=e.target,n="input"):"td"===e.target.localName&&(i=t.find(":checkbox")[0],n="td"),i.checked?"td"===n?(i.checked="",this.makeWhiteRow(t)):"input"===n&&this.makeDarkRow(t):"td"===n?(i.checked="selected",this.makeDarkRow(t)):"input"===n&&this.makeWhiteRow(t)},makeDarkRow:function(e){e.removeClass("light").addClass("dark"),e.find("a").removeClass("light").addClass("dark"),e.find(".fa-file-o").removeClass("fa-file-o").addClass("fa-file"),e.find(".fa-folder-o").removeClass("fa-folder-o").addClass("fa-folder")},makeWhiteRow:function(e){e.removeClass("dark").addClass("light"),e.find("a").removeClass("dark").addClass("light"),e.find(".fa-file").removeClass("fa-file").addClass("fa-file-o"),e.find(".fa-folder").removeClass("fa-folder").addClass("fa-folder-o")},renderSortIcon:function(){"asc"===this.current_sort_order?(r('[class*="sort-icon"]').removeClass("fa-sort-alpha-desc").removeClass("fa-sort-alpha-asc"),r(".sort-icon-"+this.current_sort_key).addClass("fa-sort-alpha-asc")):r(".sort-icon-"+this.current_sort_key).addClass("fa-sort-alpha-desc")},templateFolder:function(){return i.template(['<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>',"<% _.each(path, function(path_item) { %>","<% if (path_item[0] != id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are in this folder"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<table data-library-id="<%- parent_library_id  %>" class="grid table table-condensed">',"<thead>",'<th class="button_heading"></th>','<th style="text-align: center; width: 20px; " title="Check to select all datasets"><input id="select-all-checkboxes" style="margin: 0;" type="checkbox"></th>','<th><a class="sort-folder-name" title="Click to reverse order" href="#">name</a> <span title="Sorted alphabetically" class="sort-icon-name fa fa-sort-alpha-<%- order %>"></span></th>','<th style="width:20%;"><a class="sort-folder-description" title="Click to reverse order" href="#">description</a> <span title="Sorted alphabetically" class="sort-icon-description fa"></span></th>','<th style="width:5%;"><a class="sort-folder-file_ext" title="Click to reverse order" href="#">data type</a> <span title="Sorted alphabetically" class="sort-icon-file_ext fa"></span></th>','<th style="width:10%;">size</th>','<th style="width:160px;">time updated (UTC)</th>','<th style="width:5%;"><a class="sort-folder-state" title="Click to reverse order" href="#">state</a> <span title="Sorted alphabetically" class="sort-icon-state fa"></span></th>','<th style="width:150px;"></th> ',"</thead>",'<tbody id="folder_list_body">','<tr id="first_folder_item">',"<td>",'<a href="#<% if (upper_folder_id !== 0){ print("folders/" + upper_folder_id)} %>" title="Go to parent folder" class="btn_open_folder btn btn-default btn-xs">..<a>',"</td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","<td></td>","</tr>","</tbody>","</table>",'<div class="empty-folder-message" style="display:none;">',"This folder is either empty or you do not have proper access permissions to see the contents. If you expected something to show up",' please consult the <a href="https://galaxyproject.org/data-libraries/#permissions" target="_blank">library security wikipage</a>',' or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.',"</div>"].join(""))}});t.default={FolderListView:h}}).call(t,n(2),n(1),n(0))},299:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(13),c=a(l),d=n(126),u=a(d),h=e.View.extend({events:{"click .undelete_dataset_btn":"undeleteDataset","click .undelete_folder_btn":"undeleteFolder","click .edit_folder_btn":"startModifications","click .cancel_folder_btn":"cancelModifications","click .save_folder_btn":"saveModifications"},defaults:{type:null,visibility_config:{edit_folder_btn:!1,save_folder_btn:!1,cancel_folder_btn:!1,permission_folder_btn:!1},edit_mode:!1},initialize:function(e){this.options=i.defaults(e||{},this.defaults),this.render(this.options)},render:function(e){this.options=i.extend(this.options,e);var t=this.options.model,n=null;return"folder"===t.get("type")||"LibraryFolder"===t.get("model_class")?(this.options.type="folder",this.prepareButtons(t),n=t.get("deleted")?this.templateRowDeletedFolder():this.templateRowFolder()):"file"===t.get("type")||"LibraryDatasetDatasetAssociation"===t.get("model_class")||"LibraryDataset"===t.get("model_class")?(this.options.type="file",n=t.get("deleted")?this.templateRowDeletedFile():this.templateRowFile()):(Galaxy.emit.error("Unknown library item type found."),Galaxy.emit.error(t.get("type")||t.get("model_class"))),this.setElement(n({content_item:t,edit_mode:this.options.edit_mode,button_config:this.options.visibility_config})),this.$el.show(),this},prepareButtons:function(e){var t=this.options.visibility_config;!1===this.options.edit_mode?(t.save_folder_btn=!1,t.cancel_folder_btn=!1,!0===e.get("deleted")?(t.edit_folder_btn=!1,t.permission_folder_btn=!1):!1===e.get("deleted")&&(t.save_folder_btn=!1,t.cancel_folder_btn=!1,!0===e.get("can_modify")&&(t.edit_folder_btn=!0),!0===e.get("can_manage")&&(t.permission_folder_btn=!0))):!0===this.options.edit_mode&&(t.edit_folder_btn=!1,t.permission_folder_btn=!1,t.save_folder_btn=!0,t.cancel_folder_btn=!0),this.options.visibility_config=t},showDatasetDetails:function(){Galaxy.libraries.datasetView=new u.default.LibraryDatasetView({id:this.id})},undeleteDataset:function(e){r(".tooltip").hide();var t=this,n=r(e.target).closest("tr").data("id"),i=Galaxy.libraries.folderListView.collection.get(n);i.url=i.urlRoot+i.id+"?undelete=true",i.destroy({success:function(e,i){Galaxy.libraries.folderListView.collection.remove(n);var r=new c.default.Item(i);Galaxy.libraries.folderListView.collection.add(r),Galaxy.libraries.folderListView.collection.sortFolder("name","asc"),s.default.success("Dataset undeleted. Click this to see it.","",{onclick:function(){var e=t.model.get("folder_id");window.location=Galaxy.root+"library/list#folders/"+e+"/datasets/"+t.id}})},error:function(e,t){void 0!==t.responseJSON?s.default.error("Dataset was not undeleted. "+t.responseJSON.err_msg):s.default.error("An error occured! Dataset was not undeleted. Please try again.")}})},undeleteFolder:function(e){r(".tooltip").hide();var t=r(e.target).closest("tr").data("id"),n=Galaxy.libraries.folderListView.collection.get(t);n.url=n.urlRoot+n.id+"?undelete=true",n.destroy({success:function(e,n){Galaxy.libraries.folderListView.collection.remove(t);var i=new c.default.FolderAsModel(n);Galaxy.libraries.folderListView.collection.add(i),Galaxy.libraries.folderListView.collection.sortFolder("name","asc"),s.default.success("Folder undeleted.")},error:function(e,t){void 0!==t.responseJSON?s.default.error("Folder was not undeleted. "+t.responseJSON.err_msg):s.default.error("An error occured! Folder was not undeleted. Please try again.")}})},startModifications:function(){this.options.edit_mode=!0,this.repaint()},cancelModifications:function(){this.options.edit_mode=!1,this.repaint()},saveModifications:function(){var e=Galaxy.libraries.folderListView.collection.get(this.$el.data("id")),t=!1,n=this.$el.find(".input_folder_name").val();if(void 0!==n&&n!==e.get("name")){if(!(n.length>2))return void s.default.warning("Folder name has to be at least 3 characters long.");e.set("name",n),t=!0}var i=this.$el.find(".input_folder_description").val();if(void 0!==i&&i!==e.get("description")&&(e.set("description",i),t=!0),t){var r=this;e.save(null,{patch:!0,success:function(e){r.options.edit_mode=!1,r.repaint(e),s.default.success("Changes to folder saved.")},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg):s.default.error("An error occured while attempting to update the folder.")}})}else this.options.edit_mode=!1,this.repaint(e),s.default.info("Nothing has changed.")},repaint:function(){r(".tooltip").hide();var e=this.$el;this.render(),e.replaceWith(this.$el),this.$el.find("[data-toggle]").tooltip()},templateRowFolder:function(){return i.template(['<tr class="folder_row light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Folder" class="fa fa-folder-o"/>',"</td>",'<td style="text-align: center; "><input style="margin: 0;" type="checkbox"></td>',"<% if(!edit_mode) { %>","<td>",'<a href="#folders/<%- content_item.id %>"><%- content_item.get("name") %></a>',"</td>","<td>",'<%- content_item.get("description") %>',"</td>","<% } else if(edit_mode){ %>",'<td><textarea rows="4" class="form-control input_folder_name" placeholder="name" ><%- content_item.get("name") %></textarea></td>','<td><textarea rows="4" class="form-control input_folder_description" placeholder="description" ><%- content_item.get("description") %></textarea></td>',"<% } %>","<td>folder</td>","<td></td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td></td>","<td>","<% if(edit_mode) { %>",'<button data-toggle="tooltip" data-placement="top" title="Save changes" class="primary-button btn-xs save_folder_btn" type="button" style="<% if(button_config.save_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-floppy-o"/> Save',"</button>",'<button data-toggle="tooltip" data-placement="top" title="Discard changes" class="primary-button btn-xs cancel_folder_btn" type="button" style="<% if(button_config.cancel_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-times"/> Cancel',"</button>","<% } else if (!edit_mode){%>",'<button data-toggle="tooltip" data-placement="top" title="Modify \'<%- content_item.get("name") %>\'" class="primary-button btn-xs edit_folder_btn" type="button" style="<% if(button_config.edit_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-pencil"/> Edit',"</button>",'<a href="#/folders/<%- content_item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permission_folder_btn" title="Permissions of \'<%- content_item.get("name") %>\'" style="<% if(button_config.permission_folder_btn === false) { print("display:none;") } %>">','<span class="fa fa-group"/> Manage',"</button>","</a>","<% } %>","</td>","</tr>"].join(""))},templateRowFile:function(){return i.template(['<tr class="dataset_row light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Dataset" class="fa fa-file-o"/>',"</td>",'<td style="text-align: center; ">','<input style="margin: 0;" type="checkbox">',"</td>","<td>",'<a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>" class="library-dataset">','<%- content_item.get("name") %>',"<a>","</td>",'<td><%- content_item.get("message") %></td>','<td><%= _.escape(content_item.get("file_ext")) %></td>','<td><%= _.escape(content_item.get("file_size")) %></td>','<td><%= _.escape(content_item.get("update_time")) %></td>',"<td>",'<% if ( content_item.get("state") !== "ok" ) { %>','<%= _.escape(content_item.get("state")) %>',"<% } %>","</td>","<td>",'<% if (content_item.get("is_unrestricted")) { %>','<span data-toggle="tooltip" data-placement="top" title="Unrestricted dataset" style="color:grey;" class="fa fa-globe fa-lg"/>',"<% } %>",'<% if (content_item.get("is_private")) { %>','<span data-toggle="tooltip" data-placement="top" title="Private dataset" style="color:grey;" class="fa fa-key fa-lg"/>',"<% } %>",'<% if ((content_item.get("is_unrestricted") === false) && (content_item.get("is_private") === false)) { %>','<span data-toggle="tooltip" data-placement="top" title="Restricted dataset" style="color:grey;" class="fa fa-shield fa-lg"/>',"<% } %>",'<% if (content_item.get("can_manage")) { %>','<a href="#folders/<%- content_item.get("folder_id") %>/datasets/<%- content_item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" class="primary-button btn-xs permissions-dataset-btn" title="Permissions of \'<%- content_item.get("name") %>\'">','<span class="fa fa-group"/> Manage',"</button>","</a>","<% } %>","</td>","</tr>"].join(""))},templateRowDeletedFile:function(){return i.template(['<tr class="active deleted_dataset library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Dataset" class="fa fa-file-o"/>',"</td>","<td></td>",'<td style="color:grey;">','<%- content_item.get("name") %>',"</td>","<td>",'<%- content_item.get("message") %>',"</td>","<td>",'<%= _.escape(content_item.get("file_ext")) %>',"</td>","<td>",'<%= _.escape(content_item.get("file_size")) %>',"</td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td>",'<% if ( content_item.get("state") !== "ok" ) { %>','<%= _.escape(content_item.get("state")) %>',"<% } %>","</td>","<td>",'<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"/>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- content_item.get("name") %>\'" class="primary-button btn-xs undelete_dataset_btn" type="button" style="margin-left:1em;">','<span class="fa fa-unlock"/> Undelete',"</button>","</td>","</tr>"].join(""))},templateRowDeletedFolder:function(){return i.template(['<tr class="active deleted_folder light library-row" data-id="<%- content_item.id %>">',"<td>",'<span title="Folder" class="fa fa-folder-o"/>',"</td>","<td></td>",'<td style="color:grey;">','<%- content_item.get("name") %>',"</td>","<td>",'<%- content_item.get("description") %>',"</td>","<td>","folder","</td>","<td></td>","<td>",'<%= _.escape(content_item.get("update_time")) %>',"</td>","<td></td>","<td>",'<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey;" class="fa fa-ban fa-lg"/>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- content_item.get("name") %>\'" class="primary-button btn-xs undelete_folder_btn" type="button" style="margin-left:1em;">','<span class="fa fa-unlock"/> Undelete',"</button>","</td>","</tr>"].join(""))}});t.default={FolderRowView:h}}).call(t,n(2),n(1),n(0))},300:function(e,t,n){"use strict";(function(e,i){function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=n(7),o=r(a),s=n(13),l=r(s),c=n(301),d=r(c),u=n(1),h=r(u),f=e.View.extend({el:"#libraries_element",events:{"click .sort-libraries-link":"sort_clicked"},defaults:{page_count:null,show_page:null,all_fetched:!1},initialize:function(e){this.options=h.default.defaults(this.options||{},e,this.defaults);var t=this;this.modal=null,this.collection=new l.default.Libraries,this.collection.url=this.collection.urlRoot+"?deleted=false",this.collection.fetch({success:function(){t.render()},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occurred.")}})},render:function(e){this.options=h.default.extend(this.options,e),this.setElement("#libraries_element");var t=this.templateLibraryList(),n=null,r=null,a=function(e){return!0===e.get("public")};if(i(".tooltip").hide(),void 0!==e&&(r=void 0!==e.models?e.models:null),null!==this.collection&&null===r)this.sortLibraries(),n=Galaxy.libraries.preferences.get("with_deleted")?this.collection.models:this.collection.where({deleted:!1}),Galaxy.libraries.preferences.get("without_restricted")&&(n=h.default.filter(n,a));else if(null!==r){if(Galaxy.libraries.preferences.get("with_deleted"))n=r;else{var o=function(e){return!1===e.get("deleted")};n=h.default.filter(r,o)}Galaxy.libraries.preferences.get("without_restricted")&&(n=h.default.filter(n,a))}else n=[];(null===this.options.show_page||this.options.show_page<1)&&(this.options.show_page=1),this.options.total_libraries_count=n.length;var s=Galaxy.libraries.preferences.get("library_page_size")*(this.options.show_page-1);this.options.page_count=Math.ceil(this.options.total_libraries_count/Galaxy.libraries.preferences.get("library_page_size")),this.options.total_libraries_count>0&&s<this.options.total_libraries_count?(n=n.slice(s,s+Galaxy.libraries.preferences.get("library_page_size")),this.options.libraries_shown=n.length,Galaxy.libraries.preferences.get("library_page_size")*this.options.show_page>this.options.total_libraries_count+Galaxy.libraries.preferences.get("library_page_size")&&(n=[]),this.$el.html(t({length:1,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options),this.renderRows(n)):(this.$el.html(t({length:0,order:Galaxy.libraries.preferences.get("sort_order"),search_term:Galaxy.libraries.libraryToolbarView.options.search_term})),Galaxy.libraries.libraryToolbarView.renderPaginator(this.options)),i("#center [data-toggle]").tooltip(),i("#center").css("overflow","auto")},fetchDeleted:function(){if(this.options.all_fetched)this.render();else{var e=this;this.collection.url=this.collection.urlRoot+"?deleted=true",this.collection.fetch({remove:!1,success:function(){e.options.all_fetched=!0,e.render()},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occurred.")}})}},renderRows:function(e){for(var t=0;t<e.length;t++){var n=e[t];this.renderOne({library:n})}},renderOne:function(e){var t=e.library,n=new d.default.LibraryRowView(t);this.$el.find("#library_list_body").append(n.el)},sort_clicked:function(){"asc"===Galaxy.libraries.preferences.get("sort_order")?Galaxy.libraries.preferences.set({sort_order:"desc"}):Galaxy.libraries.preferences.set({sort_order:"asc"}),this.render()},sortLibraries:function(){"name"===Galaxy.libraries.preferences.get("sort_by")&&("asc"===Galaxy.libraries.preferences.get("sort_order")?this.collection.sortLibraries("name","asc"):"desc"===Galaxy.libraries.preferences.get("sort_order")&&this.collection.sortLibraries("name","desc"))},searchLibraries:function(e){if(""!==i.trim(e)){var t=null;t=this.collection.search(e),this.options.searching=!0,this.render({models:t,show_page:1})}else this.options.searching=!1,this.render()},templateLibraryList:function(){return h.default.template(['<div class="library_container table-responsive">',"<% if(length === 0) { %>","<% if(search_term.length > 0) { %>","<div>","There are no libraries matching your search. Try different keyword.","</div>","<% } else{ %>","<div>","There are no libraries visible to you here. If you expected some to show up please consult the",' <a href="https://galaxyproject.org/data-libraries/#permissions" target="_blank">library security wikipage</a>',' or visit the <a href="https://biostar.usegalaxy.org/" target="_blank">Galaxy support site</a>.',"</div>","<% }%>","<% } else{ %>",'<table class="grid table table-condensed">',"<thead>",'<th style="width:30%;">','<a class="sort-libraries-link" title="Click to reverse order" href="#">',"name","</a>",'<span title="Sorted alphabetically" class="fa fa-sort-alpha-<%- order %>"/>',"</th>",'<th style="width:22%;">description</th>','<th style="width:22%;">synopsis</th> ','<th style="width:26%;"></th>',"</thead>",'<tbody id="library_list_body">',"</tbody>","</table>","<% }%>","</div>"].join(""))}});t.default={LibraryListView:f}}).call(t,n(2),n(0))},301:function(e,t,n){"use strict";(function(e,i,r){Object.defineProperty(t,"__esModule",{value:!0});var a=n(7),o=function(e){return e&&e.__esModule?e:{default:e}}(a),s=e.View.extend({events:{"click .edit_library_btn":"edit_button_clicked","click .cancel_library_btn":"cancel_library_modification","click .save_library_btn":"save_library_modification","click .delete_library_btn":"delete_library","click .undelete_library_btn":"undelete_library"},edit_mode:!1,element_visibility_config:{upload_library_btn:!1,edit_library_btn:!1,permission_library_btn:!1,save_library_btn:!1,cancel_library_btn:!1,delete_library_btn:!1,undelete_library_btn:!1},initialize:function(e){this.render(e)},render:function(e){void 0===e&&(e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id"))),this.prepareButtons(e);var t=this.templateRow();return this.setElement(t({library:e,button_config:this.element_visibility_config,edit_mode:this.edit_mode})),this.$el.show(),this},repaint:function(e){i(".tooltip").hide();var t=this.$el;this.render(),t.replaceWith(this.$el),this.$el.find("[data-toggle]").tooltip()},prepareButtons:function(e){var t=this.element_visibility_config;!1===this.edit_mode?(t.save_library_btn=!1,t.cancel_library_btn=!1,t.delete_library_btn=!1,!0===e.get("deleted")?(t.undelete_library_btn=!0,t.upload_library_btn=!1,t.edit_library_btn=!1,t.permission_library_btn=!1):!1===e.get("deleted")&&(t.save_library_btn=!1,t.cancel_library_btn=!1,t.undelete_library_btn=!1,!0===e.get("can_user_add")&&(t.upload_library_btn=!0),!0===e.get("can_user_modify")&&(t.edit_library_btn=!0),!0===e.get("can_user_manage")&&(t.permission_library_btn=!0))):!0===this.edit_mode&&(t.upload_library_btn=!1,t.edit_library_btn=!1,t.permission_library_btn=!1,t.save_library_btn=!0,t.cancel_library_btn=!0,t.delete_library_btn=!0,t.undelete_library_btn=!1),this.element_visibility_config=t},edit_button_clicked:function(){this.edit_mode=!0,this.repaint()},cancel_library_modification:function(){this.edit_mode=!1,this.repaint()},save_library_modification:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=!1,n=this.$el.find(".input_library_name").val();if(void 0!==n&&n!==e.get("name")){if(!(n.length>2))return void o.default.warning("Library name has to be at least 3 characters long.");e.set("name",n),t=!0}var i=this.$el.find(".input_library_description").val();void 0!==i&&i!==e.get("description")&&(e.set("description",i),t=!0);var r=this.$el.find(".input_library_synopsis").val();if(void 0!==r&&r!==e.get("synopsis")&&(e.set("synopsis",r),t=!0),t){var a=this;e.save(null,{patch:!0,success:function(e){a.edit_mode=!1,a.repaint(e),o.default.success("Changes to library saved.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured while attempting to update the library.")}})}else this.edit_mode=!1,this.repaint(e),o.default.info("Nothing has changed.")},delete_library:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=this;e.destroy({success:function(e){e.set("deleted",!0),Galaxy.libraries.libraryListView.collection.add(e),t.edit_mode=!1,!1===Galaxy.libraries.preferences.get("with_deleted")?(i(".tooltip").hide(),t.repaint(e),t.$el.remove()):!0===Galaxy.libraries.preferences.get("with_deleted")&&t.repaint(e),o.default.success("Library has been marked deleted.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured during deleting the library.")}})},undelete_library:function(){var e=Galaxy.libraries.libraryListView.collection.get(this.$el.data("id")),t=this;e.url=e.urlRoot+e.id+"?undelete=true",e.destroy({success:function(e){e.set("deleted",!1),Galaxy.libraries.libraryListView.collection.add(e),t.edit_mode=!1,t.repaint(e),o.default.success("Library has been undeleted.")},error:function(e,t){void 0!==t.responseJSON?o.default.error(t.responseJSON.err_msg):o.default.error("An error occured while undeleting the library.")}})},templateRow:function(){return r.template(['<tr class="<% if(library.get("deleted") === true) { print("active") } %>" style="display:none;" data-id="<%- library.get("id") %>">',"<% if(!edit_mode) { %>",'<% if(library.get("deleted")) { %>','<td style="color:grey;"><%- library.get("name") %></td>',"<% } else { %>",'<td><a href="#folders/<%- library.get("root_folder_id") %>"><%- library.get("name") %></a></td>',"<% } %>",'<% if(library.get("description")) { %>','<% if( (library.get("description")).length> 80 ) { %>','<td data-toggle="tooltip" data-placement="bottom" title="<%= _.escape(library.get("description")) %>"><%= _.escape(library.get("description")).substring(0, 80) + "..." %></td>',"<% } else { %>",'<td><%= _.escape(library.get("description"))%></td>',"<% } %>","<% } else { %>","<td></td>","<% } %>",'<% if(library.get("synopsis")) { %>','<% if( (library.get("synopsis")).length> 120 ) { %>','<td data-toggle="tooltip" data-placement="bottom" title="<%= _.escape(library.get("synopsis")) %>"><%= _.escape(library.get("synopsis")).substring(0, 120) + "..." %></td>',"<% } else { %>",'<td><%= _.escape(library.get("synopsis"))%></td>',"<% } %>","<% } else { %>","<td></td>","<% } %>","<% } else if(edit_mode){ %>",'<td><textarea rows="4" class="form-control input_library_name" placeholder="name" ><%- library.get("name") %></textarea></td>','<td><textarea rows="4" class="form-control input_library_description" placeholder="description" ><%- library.get("description") %></textarea></td>','<td><textarea rows="4" class="form-control input_library_synopsis" placeholder="synopsis" ><%- library.get("synopsis") %></textarea></td>',"<% } %>",'<td class="right-center">','<% if( (library.get("public")) && (library.get("deleted") === false) ) { %>','<span data-toggle="tooltip" data-placement="top" title="Unrestricted library" style="color:grey;" class="fa fa-globe fa-lg"> </span>',"<% }%>",'<button data-toggle="tooltip" data-placement="top" title="Modify \'<%- library.get("name") %>\'" class="primary-button btn-xs edit_library_btn" type="button" style="<% if(button_config.edit_library_btn === false) { print("display:none;") } %>"><span class="fa fa-pencil"></span> Edit</button>','<a href="#library/<%- library.get("id") %>/permissions"><button data-toggle="tooltip" data-placement="top" title="Permissions of \'<%- library.get("name") %>\'" class="primary-button btn-xs permission_library_btn" type="button" style="<% if(button_config.permission_library_btn === false) { print("display:none;") } %>"><span class="fa fa-group"></span> Manage</button></a>','<button data-toggle="tooltip" data-placement="top" title="Save changes" class="primary-button btn-xs save_library_btn" type="button" style="<% if(button_config.save_library_btn === false) { print("display:none;") } %>"><span class="fa fa-floppy-o"></span> Save</button>','<button data-toggle="tooltip" data-placement="top" title="Discard changes" class="primary-button btn-xs cancel_library_btn" type="button" style="<% if(button_config.cancel_library_btn === false) { print("display:none;") } %>"><span class="fa fa-times"></span> Cancel</button>','<button data-toggle="tooltip" data-placement="top" title="Delete \'<%- library.get("name") %>\'" class="primary-button btn-xs delete_library_btn" type="button" style="<% if(button_config.delete_library_btn === false) { print("display:none;") } %>"><span class="fa fa-trash-o"></span> Delete</button>','<span data-toggle="tooltip" data-placement="top" title="Marked deleted" style="color:grey; <% if(button_config.undelete_library_btn === false) { print("display:none;") } %>" class="fa fa-ban fa-lg"></span>','<button data-toggle="tooltip" data-placement="top" title="Undelete \'<%- library.get("name") %>\' " class="primary-button btn-xs undelete_library_btn" type="button" style="<% if(button_config.undelete_library_btn === false) { print("display:none;") } %>"><span class="fa fa-unlock"></span> Undelete</button>',"</td>","</tr>"].join(""))}});t.default={LibraryRowView:s}}).call(t,n(2),n(0),n(1))},302:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(3),s=a(o),l=n(7),c=a(l),d=n(13),u=a(d),h=e.View.extend({el:"#center",defaults:{search_term:""},events:{"click #create_new_library_btn":"createLibraryFromModal","click #include_deleted_chk":"includeDeletedChecked","click #exclude_restricted_chk":"excludeRestrictedChecked","click .page_size_prompt":"showPageSizePrompt","keyup .library-search-input":"searchLibraries"},initialize:function(e){this.options=i.defaults(this.options||{},e,this.defaults),this.render()},render:function(){var e=this.templateToolBar(),t=!1,n=!0;Galaxy.user&&(t=Galaxy.user.isAdmin(),n=Galaxy.user.isAnonymous()),this.$el.html(e({admin_user:t,anon_user:n})),t&&(this.$el.find("#include_deleted_chk")[0].checked=Galaxy.libraries.preferences.get("with_deleted"),this.$el.find("#exclude_restricted_chk")[0].checked=Galaxy.libraries.preferences.get("without_restricted"))},renderPaginator:function(e){this.options=i.extend(this.options,e);var t=this.templatePaginator();this.$el.find("#library_paginator").html(t({show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_libraries_count:this.options.total_libraries_count,libraries_shown:this.options.libraries_shown,library_page_size:Galaxy.libraries.preferences.get("library_page_size")}))},createLibraryFromModal:function(e){e.preventDefault(),e.stopPropagation();var t=this;this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,s.default)("Create New Library"),body:this.templateNewLibraryInModal(),buttons:{Create:function(){t.createNewLibrary()},Close:function(){t.modal.hide()}}})},createNewLibrary:function(){var e=this.serializeNewLibrary();if(this.validateNewLibrary(e)){var t=new u.default.Library,n=this;t.save(e,{success:function(e){Galaxy.libraries.libraryListView.collection.add(e),n.modal.hide(),n.clearLibraryModal(),Galaxy.libraries.libraryListView.render(),c.default.success("Library created.")},error:function(e,t){void 0!==t.responseJSON?c.default.error(t.responseJSON.err_msg):c.default.error("An error occured.")}})}else c.default.error("Library's name is missing.");return!1},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many libraries per page do you want to see?",Galaxy.libraries.preferences.get("library_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({library_page_size:parseInt(t)}),Galaxy.libraries.libraryListView.render({show_page:1}))},clearLibraryModal:function(){r("input[name='Name']").val(""),r("input[name='Description']").val(""),r("input[name='Synopsis']").val("")},serializeNewLibrary:function(){return{name:r("input[name='Name']").val(),description:r("input[name='Description']").val(),synopsis:r("input[name='Synopsis']").val()}},validateNewLibrary:function(e){return""!==e.name},includeDeletedChecked:function(e){e.target.checked?(Galaxy.libraries.preferences.set({with_deleted:!0}),Galaxy.libraries.libraryListView.fetchDeleted()):(Galaxy.libraries.preferences.set({with_deleted:!1}),Galaxy.libraries.libraryListView.render())},excludeRestrictedChecked:function(e){e.target.checked?Galaxy.libraries.preferences.set({without_restricted:!0}):Galaxy.libraries.preferences.set({without_restricted:!1}),Galaxy.libraries.libraryListView.render()},searchLibraries:function(e){var t=r(".library-search-input").val();this.options.search_term=t,Galaxy.libraries.libraryListView.searchLibraries(t)},templateToolBar:function(){return i.template(['<div class="library_style_container">','<div id="toolbar_form">','<div id="library_toolbar">','<form class="form-inline" role="form">','<span><strong><a href="#" title="Go to first page">DATA LIBRARIES</a></strong></span>','<span id="library_paginator" class="library-paginator">',"</span>",'<div class="form-group toolbar-item">','<input type="text" class="form-control library-search-input" placeholder="Search" size="30">',"</div>","<% if(admin_user === true) { %>",'<div class="checkbox toolbar-item" style="height: 20px;">',"<label>",'<input id="include_deleted_chk" type="checkbox">',"include deleted ","</input>","</label>","<label>",'<input id="exclude_restricted_chk" type="checkbox">',"exclude restricted","</input>","</label>","</div>",'<span class="toolbar-item" data-toggle="tooltip" data-placement="top" title="Create New Library">','<button id="create_new_library_btn" class="primary-button btn-xs" type="button"><span class="fa fa-plus"></span> New Library</button>',"</span>","<% } %>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/list-of-libraries/" target="_blank">','<button class="primary-button" type="button"><span class="fa fa-question-circle"></span> Help</button>',"</a>","</span>","</form>","</div>","</div>",'<div id="libraries_element">',"</div>","</div>"].join(""))},templatePaginator:function(){return i.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- libraries_shown %> libraries shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- library_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_libraries_count %> total","</span>"].join(""))},templateNewLibraryInModal:function(){return i.template(['<div id="new_library_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">','<input type="text" name="Synopsis" value="" placeholder="Synopsis">',"</form>","</div>"].join(""))}});t.default={LibraryToolbarView:h}}).call(t,n(2),n(1),n(0))},303:function(e,t,n){"use strict";(function(e,i,r,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(3),l=o(s),c=n(4),d=o(c),u=n(7),h=o(u),f=n(13),p=o(f),_=n(10),g=o(_);n(127);var m=e.View.extend({el:"#center",events:{"click #toolbtn_create_folder":"createFolderFromModal","click #toolbtn_bulk_import":"modalBulkImport","click #include_deleted_datasets_chk":"checkIncludeDeleted","click #toolbtn_bulk_delete":"deleteSelectedItems","click .toolbtn-show-locinfo":"showLocInfo","click .page_size_prompt":"showPageSizePrompt"},defaults:{can_add_library_item:!1,contains_file_or_folder:!1,chain_call_control:{total_number:0,failed_number:0},disabled_jstree_element:"folders"},modal:null,jstree:null,histories:null,select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=i.defaults(e||{},this.defaults),this.fetchExtAndGenomes(),this.render()},render:function(e){this.options=i.extend(this.options,e);var t=this.templateToolBar(),n={id:this.options.id,is_admin:!1,is_anonym:!0,mutiple_add_dataset_options:!1};Galaxy.user&&(n.is_admin=Galaxy.user.isAdmin(),n.is_anonym=Galaxy.user.isAnonymous(),null===Galaxy.config.user_library_import_dir&&!1===Galaxy.config.allow_library_path_paste&&null===Galaxy.config.library_import_dir||(n.mutiple_add_dataset_options=!0)),this.$el.html(t(n))},renderPaginator:function(e){this.options=i.extend(this.options,e);var t=this.templatePaginator();r("body").find(".folder-paginator").html(t({id:this.options.id,show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_items_count:this.options.total_items_count,items_shown:this.options.items_shown,folder_page_size:Galaxy.libraries.preferences.get("folder_page_size")}))},configureElements:function(e){this.options=i.extend(this.options,e),!0===this.options.can_add_library_item?r(".add-library-items").show():r(".add-library-items").hide(),!0===this.options.contains_file_or_folder&&Galaxy.user?Galaxy.user.isAnonymous()?(r(".dataset-manipulation").show(),r(".logged-dataset-manipulation").hide()):(r(".logged-dataset-manipulation").show(),r(".dataset-manipulation").show()):(r(".logged-dataset-manipulation").hide(),r(".dataset-manipulation").hide()),this.$el.find("[data-toggle]").tooltip()},createFolderFromModal:function(e){e.preventDefault(),e.stopPropagation();var t=this,n=this.templateNewFolderInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Create New Folder"),body:n(),buttons:{Create:function(){t.create_new_folder_event()},Close:function(){Galaxy.modal.hide()}}})},create_new_folder_event:function(){var t=this.serialize_new_folder();if(this.validate_new_folder(t)){var n,i=new p.default.FolderAsModel,r=e.history.fragment.split("/");n=r.indexOf("page")>-1?r[r.length-3]:r[r.length-1],i.url=i.urlRoot+n,i.save(t,{success:function(e){Galaxy.modal.hide(),h.default.success("Folder created."),e.set({type:"folder"}),Galaxy.libraries.folderListView.collection.add(e)},error:function(e,t){Galaxy.modal.hide(),void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}})}else h.default.error("Folder's name is missing.");return!1},serialize_new_folder:function(){return{name:r("input[name='Name']").val(),description:r("input[name='Description']").val()}},validate_new_folder:function(e){return""!==e.name},modalBulkImport:function(){if(0===this.findCheckedRows().length)h.default.info("You must select some datasets first.");else{var e=this;this.histories=new p.default.GalaxyHistories,this.histories.fetch().done(function(){var t=e.templateBulkImportInModal();e.modal=Galaxy.modal,e.modal.show({closing_events:!0,title:(0,l.default)("Import into History"),body:t({histories:e.histories.models}),buttons:{Import:function(){e.importAllIntoHistory()},Close:function(){Galaxy.modal.hide()}}})}).fail(function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")})}},importAllIntoHistory:function(){this.modal.disableButton("Import");var e=this.modal.$("input[name=history_name]").val(),t=this;if(""!==e)r.post(Galaxy.root+"api/histories",{name:e}).done(function(e){t.options.last_used_history_id=e.id,t.processImportToHistory(e.id,e.name)}).fail(function(e,t,n){h.default.error("An error occurred.")}).always(function(){t.modal.enableButton("Import")});else{var n=r("select[name=dataset_import_bulk] option:selected").val();this.options.last_used_history_id=n;var i=r("select[name=dataset_import_bulk] option:selected").text();this.processImportToHistory(n,i),this.modal.enableButton("Import")}},processImportToHistory:function(e,t){var n=[],i=[];this.findCheckedRows().each(function(){var e=r(this).closest("tr").data("id");"F"==e.substring(0,1)?i.push(e):n.push(e)});for(var o=[],s=n.length-1;s>=0;s--){var l=n[s],c=new p.default.HistoryItem;c.url=c.urlRoot+e+"/contents",c.content=l,c.source="library",o.push(c)}for(var s=i.length-1;s>=0;s--){var d=i[s],c=new p.default.HistoryItem;c.url=c.urlRoot+e+"/contents",c.content=d,c.source="library_folder",o.push(c)}this.initChainCallControl({length:o.length,action:"to_history",history_name:t}),a.getJSON(Galaxy.root+"history/set_as_current?id="+e),this.chainCallImportingIntoHistory(o,t)},updateProgress:function(){this.progress+=this.progressStep,r(".progress-bar-import").width(Math.round(this.progress)+"%");var e=Math.round(this.progress)+"% Complete";r(".completion_span").text(e)},download:function(e,t){var n=[],i=[];this.findCheckedRows().each(function(){var e=r(this).closest("tr").data("id");"F"==e.substring(0,1)?i.push(e):n.push(e)});var a=Galaxy.root+"api/libraries/datasets/download/"+t,o={ld_ids:n,folder_ids:i};this.processDownload(a,o,"get")},processDownload:function(e,t,n){if(e&&t){t="string"==typeof t?t:r.param(t);var i="";r.each(t.split("&"),function(){var e=this.split("=");i+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),r('<form action="'+e+'" method="'+(n||"post")+'">'+i+"</form>").appendTo("body").submit().remove(),h.default.info("Your download will begin soon.")}else h.default.error("An error occurred.")},addFilesFromHistoryModal:function(){this.histories=new p.default.GalaxyHistories;var e=this;this.histories.fetch().done(function(){e.modal=Galaxy.modal;var t=e.templateAddFilesFromHistory();e.modal.show({closing_events:!0,title:(0,l.default)("Adding datasets from your history"),body:t({histories:e.histories.models}),buttons:{Add:function(){e.addAllDatasetsFromHistory()},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),e.fetchAndDisplayHistoryContents(e.histories.models[0].id),r("#dataset_add_bulk").change(function(t){e.fetchAndDisplayHistoryContents(t.target.value)})}).fail(function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")})},importFilesFromPathModal:function(){var e=this;this.modal=Galaxy.modal;var t=this.templateImportPathModal();this.modal.show({closing_events:!0,title:(0,l.default)("Please enter paths to import"),body:t({}),buttons:{Import:function(){e.importFromPathsClicked(e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),this.renderSelectBoxes()},fetchExtAndGenomes:function(){var e=this;d.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){e.list_extensions=[];for(var n in t)e.list_extensions.push({id:t[n].extension,text:t[n].extension,description:t[n].description,description_url:t[n].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)},cache:!0}),d.default.get({url:Galaxy.root+"api/genomes",success:function(t){e.list_genomes=[];for(var n in t)e.list_genomes.push({id:t[n][1],text:t[n][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})},cache:!0})},renderSelectBoxes:function(){var e=this;this.select_genome=new g.default.View({css:"library-genome-select",data:e.list_genomes,container:Galaxy.modal.$el.find("#library_genome_select"),value:"?"}),this.select_extension=new g.default.View({css:"library-extension-select",data:e.list_extensions,container:Galaxy.modal.$el.find("#library_extension_select"),value:"auto"})},importFilesFromGalaxyFolderModal:function(e){var t=this,n=this.templateBrowserModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Please select folders or files"),body:n({}),buttons:{Import:function(){t.importFromJstreePath(t,e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+t.id,{trigger:!0})}}),r(".libimport-select-all").bind("click",function(){r("#jstree_browser").jstree("check_all")}),r(".libimport-select-none").bind("click",function(){r("#jstree_browser").jstree("uncheck_all")}),this.renderSelectBoxes(),e.disabled_jstree_element="folders",this.renderJstree(e),r("input[type=radio]").change(function(n){"jstree-disable-folders"===n.target.value?(e.disabled_jstree_element="folders",t.renderJstree(e),r(".jstree-folders-message").hide(),r(".jstree-preserve-structure").hide(),r(".jstree-files-message").show()):"jstree-disable-files"===n.target.value&&(r(".jstree-files-message").hide(),r(".jstree-folders-message").show(),r(".jstree-preserve-structure").show(),e.disabled_jstree_element="files",t.renderJstree(e))})},renderJstree:function(e){this.options=i.extend(this.options,e);var t=e.source||"userdir",n=this.options.disabled_jstree_element;this.jstree=new p.default.Jstree,this.jstree.url=this.jstree.urlRoot+"?target="+t+"&format=jstree&disable="+n,this.jstree.fetch({success:function(e,t){r("#jstree_browser").jstree("destroy"),r("#jstree_browser").jstree({core:{data:e},plugins:["types","checkbox"],types:{folder:{icon:"jstree-folder"},file:{icon:"jstree-file"}},checkbox:{three_state:!1}})},error:function(e,t){void 0!==t.responseJSON?404001===t.responseJSON.err_code?h.default.warning(t.responseJSON.err_msg):h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}})},importFromPathsClicked:function(){var e=this.modal.$el.find(".preserve-checkbox").is(":checked"),t=this.modal.$el.find(".link-checkbox").is(":checked"),n=this.modal.$el.find(".spacetab-checkbox").is(":checked"),i=this.modal.$el.find(".posix-checkbox").is(":checked"),a=this.modal.$el.find(".tag-files").is(":checked"),o=this.select_extension.value(),s=this.select_genome.value(),l=r("textarea#import_paths").val(),c=[];if(l){this.modal.disableButton("Import"),l=l.split("\n");for(var d=l.length-1;d>=0;d--){var u=l[d].trim();0!==u.length&&c.push(u)}this.initChainCallControl({length:c.length,action:"adding_datasets"}),this.chainCallImportingFolders({paths:c,preserve_dirs:e,link_data:t,space_to_tab:n,to_posix_lines:i,source:"admin_path",file_type:o,tag_using_filenames:a,dbkey:s})}else h.default.info("Please enter a path relative to Galaxy root.")},initChainCallControl:function(e){var t;switch(e.action){case"adding_datasets":t=this.templateAddingDatasetsProgressBar(),this.modal.$el.find(".modal-body").html(t({folder_name:this.options.folder_name}));break;case"deleting_datasets":t=this.templateDeletingItemsProgressBar(),this.modal.$el.find(".modal-body").html(t());break;case"to_history":t=this.templateImportIntoHistoryProgressBar(),this.modal.$el.find(".modal-body").html(t({history_name:e.history_name}));break;default:Galaxy.emit.error("Wrong action specified.","datalibs")}this.progress=0,this.progressStep=100/e.length,this.options.chain_call_control.total_number=e.length,this.options.chain_call_control.failed_number=0},importFromJstreePath:function(e,t){var n=r("#jstree_browser").jstree().get_selected(!0),a=i.filter(n,function(e){return 0==e.state.disabled}),o=this.modal.$el.find(".preserve-checkbox").is(":checked"),s=this.modal.$el.find(".link-checkbox").is(":checked"),l=this.modal.$el.find(".spacetab-checkbox").is(":checked"),c=this.modal.$el.find(".posix-checkbox").is(":checked"),d=this.select_extension.value(),u=this.select_genome.value(),f=this.modal.$el.find(".tag-files").is(":checked"),p=a[0].type,_=[];if(a.length<1)h.default.info("Please select some items first.");else{this.modal.disableButton("Import");for(var g=a.length-1;g>=0;g--)void 0!==a[g].li_attr.full_path&&_.push(a[g].li_attr.full_path);if(this.initChainCallControl({length:_.length,action:"adding_datasets"}),"folder"===p){var m=t.source+"_folder";this.chainCallImportingFolders({paths:_,preserve_dirs:o,link_data:s,space_to_tab:l,to_posix_lines:c,source:m,file_type:d,dbkey:u,tag_using_filenames:f})}else if("file"===p){var m=t.source+"_file";this.chainCallImportingUserdirFiles({paths:_,file_type:d,dbkey:u,link_data:s,space_to_tab:l,to_posix_lines:c,source:m,tag_using_filenames:f})}}},fetchAndDisplayHistoryContents:function(e){var t=new p.default.HistoryContents({id:e}),n=this;t.fetch({success:function(t){var i=n.templateHistoryContents();n.histories.get(e).set({contents:t}),n.modal.$el.find("#selected_history_content").html(i({history_contents:t.models.reverse()})),n.modal.$el.find(".history-import-select-all").bind("click",function(){r("#selected_history_content [type=checkbox]").prop("checked",!0)}),n.modal.$el.find(".history-import-unselect-all").bind("click",function(){r("#selected_history_content [type=checkbox]").prop("checked",!1)})},error:function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}})},addAllDatasetsFromHistory:function(){var e=this.modal.$el.find("#selected_history_content").find(":checked"),t=[],n=[],i=[];if(e.length<1)h.default.info("You must select some datasets first.");else{this.modal.disableButton("Add"),e.each(function(){var e=r(this).closest("li").data("id");if(e){var i=r(this).closest("li").data("name");t.push(e),n.push(i)}});for(var a=t.length-1;a>=0;a--){var o=t[a],s=new p.default.Item;s.url=Galaxy.root+"api/folders/"+this.options.id+"/contents","collection"===n[a]?s.set({from_hdca_id:o}):s.set({from_hda_id:o}),i.push(s)}this.initChainCallControl({length:i.length,action:"adding_datasets"}),this.chainCallAddingHdas(i)}},chainCallImportingIntoHistory:function(e,t){var n=this,i=e.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?h.default.success("Selected datasets imported into history. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}}):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?h.default.error("There was an error and no datasets were imported into history."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&h.default.warning("Some of the datasets could not be imported into history. Click this to see what was imported.","",{onclick:function(){window.location=Galaxy.root}}),Galaxy.modal.hide(),!0;r.when(i.save({content:i.content,source:i.source})).done(function(){n.updateProgress(),n.chainCallImportingIntoHistory(e,t)}).fail(function(){n.options.chain_call_control.failed_number+=1,n.updateProgress(),n.chainCallImportingIntoHistory(e,t)})},chainCallImportingUserdirFiles:function(e){var t=this,n=e.paths.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?(h.default.success("Selected files imported into the current folder"),Galaxy.modal.hide()):h.default.error("An error occured."),!0;r.when(r.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+n+"&file_type="+e.file_type+"&link_data="+e.link_data+"&space_to_tab="+e.space_to_tab+"&to_posix_lines="+e.to_posix_lines+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(n){t.updateProgress(),t.chainCallImportingUserdirFiles(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingUserdirFiles(e)})},chainCallImportingFolders:function(e){var t=this,n=e.paths.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?(h.default.success("Selected folders and their contents imported into the current folder."),Galaxy.modal.hide()):h.default.error("An error occured."),!0;r.when(r.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+n+"&preserve_dirs="+e.preserve_dirs+"&link_data="+e.link_data+"&to_posix_lines="+e.to_posix_lines+"&space_to_tab="+e.space_to_tab+"&file_type="+e.file_type+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(n){t.updateProgress(),t.chainCallImportingFolders(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingFolders(e)})},chainCallAddingHdas:function(e){var t=this;this.added_hdas=new p.default.Folder;var n=e.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?h.default.success("Selected datasets from history added to the folder"):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?h.default.error("There was an error and no datasets were added to the folder."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&h.default.warning("Some of the datasets could not be added to the folder"),Galaxy.modal.hide(),this.added_hdas;r.when(n.save({from_hda_id:n.get("from_hda_id")})).done(function(n){Galaxy.libraries.folderListView.collection.add(n),t.updateProgress(),t.chainCallAddingHdas(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallAddingHdas(e)})},chainCallDeletingItems:function(e){var t=this;this.deleted_items=new p.default.Folder;var n=e.pop();if(void 0===n)return 0===this.options.chain_call_control.failed_number?h.default.success("Selected items were deleted."):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?h.default.error("There was an error and no items were deleted. Please make sure you have sufficient permissions."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&h.default.warning("Some of the items could not be deleted. Please make sure you have sufficient permissions."),Galaxy.modal.hide(),this.deleted_items;n.destroy().done(function(i){if(Galaxy.libraries.folderListView.collection.remove(n.id),t.updateProgress(),Galaxy.libraries.folderListView.options.include_deleted){var r=null;"folder"===i.type||"LibraryFolder"===i.model_class?r=new p.default.FolderAsModel(i):"file"===i.type||"LibraryDataset"===i.model_class?r=new p.default.Item(i):(Galaxy.emit.error("Unknown library item type found.","datalibs"),Galaxy.emit.error(i.type||i.model_class,"datalibs")),Galaxy.libraries.folderListView.collection.add(r)}t.chainCallDeletingItems(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallDeletingItems(e)})},checkIncludeDeleted:function(e){e.target.checked?Galaxy.libraries.folderListView.fetchFolder({include_deleted:!0}):Galaxy.libraries.folderListView.fetchFolder({include_deleted:!1})},deleteSelectedItems:function(){var e=[],t=[],n=this.findCheckedRows();if(0===n.length)h.default.info("You must select at least one item for deletion.");else{var i=this.templateDeletingItemsProgressBar();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Deleting selected items"),body:i({}),buttons:{Close:function(){Galaxy.modal.hide()}}}),this.options.chain_call_control.total_number=0,this.options.chain_call_control.failed_number=0,n.each(function(){var n=r(this).closest("tr").data("id");void 0!==n&&("F"==n.substring(0,1)?t.push(n):e.push(n))});var a=e.length+t.length;this.progressStep=100/a,this.progress=0;for(var o=[],s=e.length-1;s>=0;s--){var c=new p.default.Item({id:e[s]});o.push(c)}for(var s=t.length-1;s>=0;s--){var d=new p.default.FolderAsModel({id:t[s]});o.push(d)}this.options.chain_call_control.total_number=a,this.chainCallDeletingItems(o)}},showLocInfo:function(){var e=null,t=this;null!==Galaxy.libraries.libraryListView?(e=Galaxy.libraries.libraryListView.collection.get(this.options.parent_library_id),this.showLocInfoModal(e)):(e=new p.default.Library({id:this.options.parent_library_id}),e.fetch({success:function(){t.showLocInfoModal(e)},error:function(e,t){void 0!==t.responseJSON?h.default.error(t.responseJSON.err_msg):h.default.error("An error occurred.")}}))},showLocInfoModal:function(e){var t=this,n=this.templateLocInfoInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Location Details"),body:n({library:e,options:t.options}),buttons:{Close:function(){Galaxy.modal.hide()}}})},showImportModal:function(e){switch(e.source){case"history":this.addFilesFromHistoryModal();break;case"importdir":this.importFilesFromGalaxyFolderModal({source:"importdir"});break;case"path":this.importFilesFromPathModal();break;case"userdir":this.importFilesFromGalaxyFolderModal({source:"userdir"});break;default:Galaxy.libraries.library_router.back(),h.default.error("Invalid import source.")}},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many items per page do you want to see?",Galaxy.libraries.preferences.get("folder_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({folder_page_size:parseInt(t)}),Galaxy.libraries.folderListView.render({id:this.options.id,show_page:1}))},findCheckedRows:function(){return r("#folder_list_body").find(":checked")},templateToolBar:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<form class="form-inline" role="form">',"<span><strong>DATA LIBRARIES</strong></span>",'<span class="library-paginator folder-paginator"></span>','<div class="checkbox toolbar-item logged-dataset-manipulation" style="height: 20px; display:none;">',"<label>",'<input id="include_deleted_datasets_chk" type="checkbox">include deleted</input>',"</label>","</div>",'<button style="display:none;" data-toggle="tooltip" data-placement="top" title="Create New Folder" id="toolbtn_create_folder" class="btn btn-default primary-button add-library-items toolbar-item" type="button">','<span class="fa fa-plus"></span><span class="fa fa-folder"></span>',"</button>","<% if(mutiple_add_dataset_options) { %>",'<div class="btn-group add-library-items" style="display:none;">','<button title="Add Datasets to Current Folder" id="" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">','<span class="fa fa-plus"></span><span class="fa fa-file"></span><span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#folders/<%= id %>/import/history"> from History</a></li>',"<% if(Galaxy.config.user_library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/userdir"> from User Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li class="divider"></li>','<li class="dropdown-header">Admins only</li>',"<% if(Galaxy.config.library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/importdir">from Import Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li><a href="#folders/<%= id %>/import/path">from Path</a></li>',"<% } %>","<% } %>","</ul>","</div>","<% } else { %>",'<a  data-placement="top" title="Add Datasets to Current Folder" style="display:none;" class="btn btn-default add-library-items" href="#folders/<%= id %>/import/history" role="button">','<span class="fa fa-plus"></span><span class="fa fa-file"></span>',"</a>","<% } %>",'<button data-toggle="tooltip" data-placement="top" title="Import selected datasets into history" id="toolbtn_bulk_import" class="primary-button dataset-manipulation" style="margin-left: 0.5em; display:none;" type="button">','<span class="fa fa-book"></span>',"&nbsp;to History","</button>",'<div class="btn-group dataset-manipulation" style="margin-left: 0.5em; display:none; ">','<button title="Download selected items as archive" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">','<span class="fa fa-download"></span> Download <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#/folders/<%= id %>/download/tgz">.tar.gz</a></li>','<li><a href="#/folders/<%= id %>/download/tbz">.tar.bz</a></li>','<li><a href="#/folders/<%= id %>/download/zip">.zip</a></li>',"</ul>","</div>",'<button data-toggle="tooltip" data-placement="top" title="Mark selected items deleted" id="toolbtn_bulk_delete" class="primary-button logged-dataset-manipulation" style="margin-left: 0.5em; display:none; " type="button">','<span class="fa fa-times"></span> Delete</button>','<button data-id="<%- id %>" data-toggle="tooltip" data-placement="top" title="Show location details" class="primary-button toolbtn-show-locinfo" style="margin-left: 0.5em;" type="button">','<span class="fa fa-info-circle"></span>',"&nbsp;Details","</button>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/folder-contents/" target="_blank">','<button class="primary-button" type="button">','<span class="fa fa-question-circle"></span>',"&nbsp;Help","</button>","</a>","</span>","</div>","</form>",'<div id="folder_items_element">',"</div>",'<div class="folder-paginator paginator-bottom"></div>',"</div>"].join(""))},templateLocInfoInModal:function(){return i.template(["<div>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">library</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>",'<td><%- library.get("name") %></td>',"</tr>",'<% if(library.get("description") !== "") { %>',"<tr>","<td>description</td>",'<td><%- library.get("description") %></td>',"</tr>","<% } %>",'<% if(library.get("synopsis") !== "") { %>',"<tr>","<td>synopsis</td>",'<td><%- library.get("synopsis") %></td>',"</tr>","<% } %>",'<% if(library.get("create_time_pretty") !== "") { %>',"<tr>","<td>created</td>",'<td><span title="<%- library.get("create_time") %>"><%- library.get("create_time_pretty") %></span></td>',"</tr>","<% } %>","<tr>","<td>id</td>",'<td><%- library.get("id") %></td>',"</tr>","</tbody>","</table>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">folder</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>","<td><%- options.folder_name %></td>","</tr>",'<% if(options.folder_description !== "") { %>',"<tr>","<td>description</td>","<td><%- options.folder_description %></td>","</tr>","<% } %>","<tr>","<td>id</td>","<td><%- options.id %></td>","</tr>","</tbody>","</table>","</div>"].join(""))},templateNewFolderInModal:function(){return i.template(['<div id="new_folder_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">',"</form>","</div>"].join(""))},templateBulkImportInModal:function(){return i.template(["<div>",'<div class="library-modal-item">',"Select history: ",'<select id="dataset_import_bulk" name="dataset_import_bulk" style="width:50%; margin-bottom: 1em; " autofocus>',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>",'<div class="library-modal-item">',"or create new: ",'<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;">',"</input>","</div>","</div>"].join(""))},templateImportIntoHistoryProgressBar:function(){return i.template(['<div class="import_text">',"Importing selected items to history <b><%= _.escape(history_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateAddingDatasetsProgressBar:function(){return i.template(['<div class="import_text">',"Adding selected datasets to library folder <b><%= _.escape(folder_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateDeletingItemsProgressBar:function(){return i.template(['<div class="import_text">',"</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateBrowserModal:function(){return i.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-files-message">All files you select will be imported into the current folder ignoring their folder structure.</div>','<div class="alert alert-info jstree-folders-message" style="display:none;">All files within the selected folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom:1em;">','<label title="Switch to selecting files" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-folders" checked="checked"> Choose Files',"</label>",'<label title="Switch to selecting folders" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-files"> Choose Folders',"</label>","</div>",'<div style="margin-bottom:1em;">','<label class="checkbox-inline jstree-preserve-structure" style="display:none;">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<button title="Select all files" type="button" class="button primary-button libimport-select-all">',"Select all","</button>",'<button title="Select no files" type="button" class="button primary-button libimport-select-none">',"Unselect all","</button>","<hr />",'<div id="jstree_browser">',"</div>","<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<br>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateImportPathModal:function(){return i.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-folders-message">All files within the given folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom: 0.5em;">','<label class="checkbox-inline">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>","<br>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<textarea id="import_paths" class="form-control" rows="5" placeholder="Absolute paths (or paths relative to Galaxy root) separated by newline" autofocus></textarea>',"<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateAddFilesFromHistory:function(){return i.template(['<div id="add_files_modal">',"<div>","1.&nbsp;Select history:&nbsp;",'<select id="dataset_add_bulk" name="dataset_add_bulk" style="width:66%; "> ',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>","<br/>",'<div id="selected_history_content">',"</div>","</div>"].join(""))},templateHistoryContents:function(){return i.template(["<p>2.&nbsp;Choose the datasets to import:</p>","<div>",'<button title="Select all datasets" type="button" class="button primary-button history-import-select-all">',"Select all","</button>",'<button title="Select all datasets" type="button" class="button primary-button 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Collection Tools">','<%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection of type <%= _.escape(collection_type) %> not supported.)',"</span>","</li>","<% } %>",'<% } else if (history_item.get("visible") === true && history_item.get("state") === "ok") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">','<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %>',"</label>","</li>","<% } %>","<% } %>","<% }); %>","</ul>"].join(""))},templatePaginator:function(){return i.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#folders/<%= id %>/page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#folders/<%= id %>/page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- items_shown %> items shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- folder_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_items_count %> total","</span>"].join(""))}});t.default={FolderToolbarView:m}}).call(t,n(2),n(1),n(0),n(0))},304:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(7),s=a(o),l=n(13),c=a(l),d=n(10),u=a(d),h=e.View.extend({el:"#center",model:null,options:{},events:{"click .toolbtn_save_permissions":"savePermissions"},initialize:function(e){this.options=i.extend(this.options,e),this.options.id&&this.fetchLibrary()},fetchLibrary:function(e){this.options=i.extend(this.options,e),this.model=new c.default.Library({id:this.options.id});var t=this;this.model.fetch({success:function(){t.options.show_permissions&&t.showPermissions()},error:function(e,t){void 0!==t.responseJSON?s.default.error(t.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):s.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},showPermissions:function(e){this.options=i.extend(this.options,e),r(".tooltip").remove(),void 0!==this.options.fetched_permissions&&(0===this.options.fetched_permissions.access_library_role_list.length?this.model.set({is_unrestricted:!0}):this.model.set({is_unrestricted:!1}));var t=!1;Galaxy.user&&(t=Galaxy.user.isAdmin());var n=this.templateLibraryPermissions();this.$el.html(n({library:this.model,is_admin:t}));var a=this;r.get(Galaxy.root+"api/libraries/"+a.id+"/permissions?scope=current").done(function(e){a.prepareSelectBoxes({fetched_permissions:e})}).fail(function(){s.default.error("An error occurred while attempting to fetch library permissions.")}),r("#center [data-toggle]").tooltip(),r("#center").css("overflow","auto")},_serializeRoles:function(e){for(var t=[],n=0;n<e.length;n++)t.push(e[n][1]+":"+e[n][0]);return t},prepareSelectBoxes:function(e){this.options=i.extend(this.options,e);var t=this.options.fetched_permissions,n=this,r=this._serializeRoles(t.access_library_role_list),a=this._serializeRoles(t.add_library_item_role_list),o=this._serializeRoles(t.manage_library_role_list),s=this._serializeRoles(t.modify_library_role_list);n.accessSelectObject=new u.default.View(this._createSelectOptions(this,"access_perm",r,!0)),n.addSelectObject=new u.default.View(this._createSelectOptions(this,"add_perm",a,!1)),n.manageSelectObject=new u.default.View(this._createSelectOptions(this,"manage_perm",o,!1)),n.modifySelectObject=new u.default.View(this._createSelectOptions(this,"modify_perm",s,!1))},_createSelectOptions:function(e,t,n,i){return i=!0===i&&i,{minimumInputLength:0,css:t,multiple:!0,placeholder:"Click to select a role",container:e.$el.find("#"+t),ajax:{url:Galaxy.root+"api/libraries/"+e.id+"/permissions?scope=available&is_library_access="+i,dataType:"json",quietMillis:100,data:function(e,t){return{q:e,page_limit:10,page:t}},results:function(e,t){var n=10*t<e.total;return{results:e.roles,more:n}}},formatResult:function(e){return e.name+" type: "+e.type},formatSelection:function(e){return e.name},initSelection:function(e,t){var n=[];r(e.val().split(",")).each(function(){var e=this.split(":");n.push({id:e[0],name:e[1]})}),t(n)},initialData:n,dropdownCssClass:"bigdrop"}},makeDatasetPrivate:function(){var e=this;r.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=make_private").done(function(t){e.model.set({is_unrestricted:!1}),e.showPermissions({fetched_permissions:t}),s.default.success("The dataset is now private to you.")}).fail(function(){s.default.error("An error occurred while attempting to make dataset private.")})},removeDatasetRestrictions:function(){var e=this;r.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=remove_restrictions").done(function(t){e.model.set({is_unrestricted:!0}),e.showPermissions({fetched_permissions:t}),s.default.success("Access to this dataset is now unrestricted.")}).fail(function(){s.default.error("An error occurred while attempting to make dataset unrestricted.")})},_extractIds:function(e){for(var t=[],n=e.length-1;n>=0;n--)t.push(e[n].id);return t},savePermissions:function(e){var t=this,n=this._extractIds(this.accessSelectObject.$el.select2("data")),i=this._extractIds(this.addSelectObject.$el.select2("data")),a=this._extractIds(this.manageSelectObject.$el.select2("data")),o=this._extractIds(this.modifySelectObject.$el.select2("data"));r.post(Galaxy.root+"api/libraries/"+t.id+"/permissions?action=set_permissions",{"access_ids[]":n,"add_ids[]":i,"manage_ids[]":a,"modify_ids[]":o}).done(function(e){t.showPermissions({fetched_permissions:e}),s.default.success("Permissions saved.")}).fail(function(){s.default.error("An error occurred while attempting to set library permissions.")})},templateLibraryPermissions:function(){return i.template(['<div class="library_style_container">','<div id="library_toolbar">','<a href="#">','<button data-toggle="tooltip" data-placement="top" title="Go back to the list of Libraries" class="btn btn-default primary-button" type="button">','<span class="fa fa-list"/>',"&nbsp;Libraries","</button>","</a>","</div>","<h1>",'Library: <%= _.escape(library.get("name")) %>',"</h1>",'<div class="alert alert-warning">',"<% if (is_admin) { %>","You are logged in as an <strong>administrator</strong> therefore you can manage any library on this Galaxy instance. Please make sure you understand the consequences.","<% } else { %>","You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.","<% }%>","</div>",'<div class="dataset_table">',"<h2>Library permissions</h2>","<h4>Roles that can access the library</h4>",'<div id="access_perm" class="access_perm roles-selection"/>','<div class="alert alert-info roles-selection">',"User with <strong>any</strong> of these roles can access this library. 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title="Save modifications" class="btn btn-default toolbtn_save_permissions primary-button" type="button">','<span class="fa fa-floppy-o"/>',"&nbsp;Save","</button>","</div>","</div>"].join(""))}});t.default={FolderView:h}}).call(t,n(2),n(1),n(0))},306:function(e,t,n){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var 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t=this;r("#search_box").autocomplete({source:function(e,n){var i=t.model.tool_shed.replace(/%2f/g,"/"),a=Galaxy.root+"api/tool_shed/search",o={term:e.term,tool_shed_url:i};r.post(a,o,function(e){console.log(e);var t=c.default.shedParser(e);n(t)})},minLength:3,select:function(n,i){var r=i.item.value,a=(Galaxy.root,t.model.tool_shed,"repository/s/"+t.model.tool_shed+"/r/"+r);e.history.navigate(a,{trigger:!0,replace:!0})}})},reDraw:function(e){this.$el.empty(),this.model.url=this.model.url+"?tool_shed_url="+this.options.tool_shed,this.initialize(e)},templateCategoryList:i.template(['<style type="text/css">',".ui-autocomplete { background-color: #fff; }","li.ui-menu-item { list-style-type: none; }","</style>",'<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner" style="layout: inline;">Categories in <%= tool_shed.replace(/%2f/g, "/") %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 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class="ui-widget" >','<input class="search-box-input" id="search_box" name="search" data-shedurl="<%= tool_shed.replace(/%2f/g, "/") %>" placeholder="Search repositories by name or id" size="60" type="text" />',"</span>","</div>",'<div style="clear: both; margin-top: 1em;">','<table class="grid">','<thead id="grid-table-header">',"<tr>",'<th style="width: 10%;">Owner</th>','<th style="width: 15%;">Name</th>',"<th>Synopsis</th>",'<th style="width: 10%;">Type</th>',"</tr>","</thead>",'<% _.each(category.get("repositories"), function(repository) { %>',"<tr>","<td><%= repository.owner %></td>","<td>",'<div style="float: left; margin-left: 1px;" class="menubutton split">','<a href="#/repository/s/<%= tool_shed %>/r/<%= repository.id %>"><%= repository.name %></a>',"</div>","</td>","<td><%= repository.description %></td>","<td><%= repository.type %></td>","</tr>","<% }); %>","</table>","</div>","</div>"].join(""))});t.default={Category:d}}).call(t,n(2),n(1),n(0))},310:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(17),s=a(o),l=n(127),c=(a(l),n(4)),d=a(c),u=n(8),h=a(u),f=n(11),p=a(f),_=n(18),g=a(_),m=e.View.extend({el:"#center",initialize:function(e){this.options=i.defaults(this.options||{},this.defaults),this.model=new s.default.RepositoryCollection,this.listenTo(this.model,"sync",this.render);var t=e.tool_shed.replace(/\//g,"%2f");this.model.url+="?tool_shed_url="+t+"&repository_id="+e.repository_id,this.model.tool_shed_url=e.tool_shed.replace(/%2f/g,"/"),this.model.tool_shed=t,this.model.category=e.repository_id,this.model.fetch()},render:function(e){var t=this.templateRepoDetails,n=this.model.models[0];this.options={repository:n.get("repository"),tool_shed:this.model.tool_shed,queue:g.default.queueLength()};var a=Object.keys(this.options.repository.metadata).sort(function(e,t){return parseInt(e.split(":")[0]-t.split(":")[0])}),o={},s=this.options.repository.metadata;a.forEach(function(e){o[e]=s[e]}),this.options.repository.metadata=o,this.options.current_changeset=this.options.current_changeset||a[a.length-1],this.options.current_metadata=this.options.repository.metadata[this.options.current_changeset],this.options.current_metadata.tool_shed_url=this.model.tool_shed_url,this.options.tools=this.options.current_metadata.tools,this.options.repository_dependencies_template=this.templateRepoDependencies,this.options.repository_dependency_template=this.templateRepoDependency,this.options.tps_template_global_select=this.templateGlobalSectionSelect,this.options.tps_template_tool_select=this.templateToolSectionSelect,this.options.tps_select_options=this.templatePanelSelectOptions,this.options.tool_dependencies=n.get("tool_dependencies"),this.options.shed_tool_conf=this.templateShedToolConf({stc_html:n.get("shed_conf")}),this.options.panel_section_dict=n.get("panel_section_dict"),this.options.api_url=Galaxy.root+"api/tool_shed_repositories/install?async=True",this.options=i.extend(this.options,e),this.$el.html(t(this.options)),this.checkInstalled(this.options.current_metadata),this.bindEvents(),r("#center").css("overflow","auto")},bindEvents:function(){var e=this;r("#changeset").on("change",function(){e.options.current_changeset=r("#changeset").find("option:selected").text(),e.options.current_metadata=e.options.repository.metadata[e.options.current_changeset],e.checkInstalled(e.options.current_metadata),e.reDraw(e.options)}),r("#tool_panel_section_select").on("change",function(){e.tpsSelection()}),r("#install_repository").on("click",function(t){r("#repository_installation");t.preventDefault();var n={};n.repositories=JSON.stringify([[r("#install_repository").attr("data-tsrid"),r("#changeset").find("option:selected").val()]]),n.tool_shed_repository_ids=JSON.stringify([r("#install_repository").attr("data-tsrid")]),n.tool_shed_url=e.model.tool_shed_url,n.install_tool_dependencies=r("#install_tool_dependencies").val(),n.install_repository_dependencies=r("#install_repository_dependencies").val(),n.install_resolver_dependencies=r("#install_resolver_dependencies").val();e.panelSelect(n);n.tool_panel_section=JSON.stringify(e.panelSelect(n)),n.shed_tool_conf=r("select[name='shed_tool_conf']").find("option:selected").val(),n.changeset=r("#changeset").find("option:selected").val();var i=r("#repository_installation").attr("action");e.prepareInstall(n,i)}),r("#queue_install").on("click",function(t){e.options.current_changeset=r("#changeset").find("option:selected").text(),e.options.current_metadata=e.options.repository.metadata[e.options.current_changeset];var n=(e.options.current_changeset,{});i.each(Object.keys(e.options.current_metadata),function(t){n[t]||(n[t]=e.options.current_metadata[t])}),n.install_tool_dependencies=r("#install_tool_dependencies").val(),n.install_repository_dependencies=r("#install_repository_dependencies").val(),n.install_resolver_dependencies=r("#install_resolver_dependencies").val(),n.tool_panel_section=JSON.stringify(e.panelSelect({})),n.shed_tool_conf=r("select[name='shed_tool_conf']").find("option:selected").val(),n.tool_shed_url=e.model.tool_shed_url,"/"==n.tool_shed_url.substr(-1)&&(n.tool_shed_url=n.tool_shed_url.substr(0,n.tool_shed_url.length-1)),g.default.addToQueue(n),e.checkInstalled(n)}),r(".tool_panel_section_picker").on("change",function(){r(this).find("option:selected").val()==r("#tool_panel_section_select").find("option:selected").val()?r(this).attr("default","active"):r(this).removeAttr("default")}),r(function(){r("#repository_dependencies").jstree()}),r(".tool_form").on("click",function(){var t=r(this).attr("data-guid"),n=(r(this).attr("data-clean"),r(this).attr("data-name")),i=r(this).attr("data-desc"),a=e.model.tool_shed_url,o=r("#repository_details").attr("data-tsrid"),s=r("#changeset").find("option:selected").val(),l=Galaxy.root+"api/tool_shed/tool_json",c={guid:t,tool_shed_url:a,tsr_id:o,changeset:s};r.get(l,c,function(e){e.cls="ui-portlet-plain";var t=new p.default(e);d.default.deepeach(e.inputs,function(e){e.type&&-1!=["data","data_collection"].indexOf(e.type)&&(e.type="hidden",e.info="Data input '"+e.name+"' ("+d.default.textify(e.extensions)+")")});var r=new h.default.View,a="<u>"+n+"</u> "+i;r.show({closing_events:!0,title:a,body:t.$el,buttons:{Close:function(){r.hide()}}})})})},checkInstalled:function(e){var t=this,n={name:e.name,owner:e.owner},i=!1;t.repoQueued(e);r.get(Galaxy.root+"api/tool_shed_repositories",n,function(n){for(var a=0;a<n.length;a++){var o=n[a],s=!o.deleted&&!o.uninstalled,l=o.changeset_revision==e.changeset_revision||o.installed_changeset_revision==e.changeset_revision;o.name==e.repository.name&&o.owner==e.repository.owner&&s&&l&&(i=!0),i?(r("#install_repository").prop("disabled",!0),r("#install_repository").val("This revision is already installed")):(r("#install_repository").prop("disabled",!1),r("#install_repository").val("Install this revision"))}t.repoQueued(e)||i?(r("#queue_install").hide(),r("#queue_install").val("This revision is already in the queue")):(r("#queue_install").show(),r("#queue_install").val("Install this revision later"))})},panelSelect:function(e){var t={};return r("#tool_panel_section_select").length?e.tool_panel_section_id=r("#tool_panel_section_select").find("option:selected").val():e.new_tool_panel_section=r("#new_tool_panel_section").val(),r(".tool_panel_section_picker").each(function(){var e=r(this).attr("name"),n=r(this).attr("data-toolguid");t[n]="tool_panel_section_id"===e?{tool_panel_section:r(this).find("option:selected").val(),action:"append"}:{tool_panel_section:r(this).val(),action:"create"}}),t},reDraw:function(e){this.$el.empty(),this.render(e)},repoQueued:function(e){var t=this;if(localStorage.repositories){var n,i=t.queueKey(e);return localStorage.repositories&&(n=JSON.parse(localStorage.repositories)),!(!n||!n.hasOwnProperty(i))}},queueKey:function(e){var t=this.model.tool_shed_url;return"/"==t.substr(-1)&&(t=t.substr(0,t.length-1)),t+"|"+e.repository_id+"|"+e.changeset_revision},tpsSelection:function(){new_tps=r("#tool_panel_section_select").find("option:selected").val(),r('.tool_panel_section_picker[default="active"]').each(function(){r(this).val(new_tps)})},prepareInstall:function(e,t){var n=this;r.post(t,e,function(e){var t=JSON.parse(e);n.doInstall(t)})},doInstall:function(t){var n=Galaxy.root+"admin_toolshed/install_repositories",i=t.repositories,a="status/r/"+i.join("|");r.post(n,t,function(e){console.log("Initializing repository installation succeeded")}),e.history.navigate(a,{trigger:!0,replace:!0})},templateRepoDetails:i.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner">Repository information for <strong><%= repository.name %></strong> from <strong><%= repository.owner %></strong></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<div class="unified-panel-body" id="repository_details" data-tsrid="<%= repository.id %>">','<form id="repository_installation" name="install_repository" method="post" action="<%= api_url %>">','<input type="hidden" id="repositories" name="<%= repository.id %>" value="ID" />','<input type="hidden" id="tool_shed_url" name="tool_shed_url" value="<%= tool_shed %>" />','<div class="toolForm">','<div class="toolFormTitle">Changeset</div>','<div class="toolFormBody changeset">','<select id="changeset" name="changeset" style="margin: 5px;">',"<% _.each(Object.keys(repository.metadata), function(changeset) { %>",'<% if (changeset == current_changeset) { var selected = "selected "; } else { var selected = ""; } %>','<option <%= selected %>value="<%= changeset.split(":")[1] %>"><%= changeset %></option>',"<% }); %>","</select>",'<input class="btn btn-primary preview-button" data-tsrid="<%= current_metadata.repository.id %>" type="submit" id="install_repository" name="install_repository" value="Install this revision now" />','<input class="btn btn-primary preview-button" type="button" id="queue_install" name="queue_install" value="Install this revision later" />','<div class="toolParamHelp" style="clear: both;">Please select a revision and review the settings below before installing.</div>',"</div>","</div>","<%= shed_tool_conf %>","<% if (current_metadata.has_repository_dependencies) { %>",'<div class="toolFormTitle">Repository dependencies for <strong id="current_changeset"><%= current_changeset %></strong></div>','<div class="toolFormBody">','<p id="install_repository_dependencies_checkbox">','<input type="checkbox" checked id="install_repository_dependencies" />','<label for="install_repository_dependencies">Install repository dependencies</label>',"</p>","<% current_metadata.repository_dependency_template = repository_dependency_template; %>",'<div class="tables container-table" id="repository_dependencies">','<div class="expandLink">','<a class="toggle_folder" data_target="repository_dependencies_table">',"Repository dependencies &ndash; <em>installation of these additional repositories is required</em>","</a>","</div>","<%= repository_dependencies_template(current_metadata) %>","</div>","</div>","<% } %>","<% if (current_metadata.includes_tool_dependencies) { %>",'<div class="toolFormTitle">Tool dependencies</div>','<div class="toolFormBody">','<p id="install_resolver_dependencies_checkbox">','<input type="checkbox" checked id="install_resolver_dependencies" />','<label for="install_resolver_dependencies">Install resolver dependencies</label>',"</p>",'<p id="install_tool_dependencies_checkbox">','<input type="checkbox" checked id="install_tool_dependencies" />','<label for="install_tool_dependencies">Install tool dependencies</label>',"</p>",'<div class="tables container-table" id="tool_dependencies">','<div class="expandLink">','<a class="toggle_folder" data_target="tool_dependencies_table">',"Tool dependencies &ndash; <em>repository tools require handling of these dependencies</em>","</a>","</div>",'<table class="tables container-table" id="tool_dependencies_table" border="0" cellpadding="2" cellspacing="2" width="100%">',"<thead>",'<tr style="display: table-row;" class="datasetRow" parent="0" id="libraryItem-rt-f9cad7b01a472135">','<th style="padding-left: 40px;">Name</th>',"<th>Version</th>","<th>Type</th>","</tr>","</thead>",'<tbody id="tool_deps">',"<% _.each(tool_dependencies[current_changeset], function(dependency) { %>",'<tr class="datasetRow tool_dependency_row" style="display: table-row;">','<td style="padding-left: 40px;">',"<%= dependency.name %></td>","<td><%= dependency.version %></td>","<td><%= dependency.type %></td>","</tr>","<% }); %>","</tbody>","</table>","</div>","</div>","<% } %>","<% if (current_metadata.includes_tools_for_display_in_tool_panel) { %>",'<div class="toolFormTitle">Tools &ndash; <em>click the name to preview the tool and use the pop-up menu to inspect all metadata</em></div>','<div class="toolFormBody">','<div class="tables container-table" id="tools_toggle">','<table class="tables container-table" id="valid_tools" border="0" cellpadding="2" cellspacing="2" width="100%">',"<thead>",'<tr style="display: table-row;" class="datasetRow" parent="0" id="libraryItem-rt-f9cad7b01a472135">','<th style="padding-left: 40px;">Name</th>',"<th>Description</th>","<th>Version</th>","<th><%= tps_template_global_select({tps: panel_section_dict, tps_select_options: tps_select_options}) %></tr>","</thead>",'<tbody id="tools_in_repo">',"<% _.each(current_metadata.tools, function(tool) { %>",'<tr id="libraryItem-<%= tool.clean %>" class="tool_row" style="display: table-row;" style="width: 15%">','<td style="padding-left: 40px;">','<div id="tool-<%= tool.clean %>" class="menubutton split popup" style="float: left;">','<a class="tool_form view-info" data-toggle="modal" data-target="toolform_<%= tool.clean %>" data-clean="<%= tool.clean %>" data-guid="<%= tool.guid %>" data-name="<%= tool.name %>" data-desc="<%= tool.description %>"><%= tool.name %></a>',"</div>","</td>","<td><%= tool.description %></td>",'<td style="width: 15%"><%= tool.version %></td>','<td style="width: 35%" id="tool_tps_<%= tool.clean %>">',"<%= tps_template_tool_select({tool: tool, tps: panel_section_dict, tps_select_options: tps_select_options}) %>","</td>","</tr>","<% }); %>","</tbody>","</table>","</div>","</div>","<% } %>","</form>","</div>"].join("")),templateRepoDependencies:i.template(['<div class="toolFormTitle">Repository Dependencies</div>','<div class="toolFormBody tables container-table" id="repository_dependencies">',"<ul>","<li>Repository installation requires the following","<% if (has_repository_dependencies) { %>","<% _.each(repository_dependencies, function(dependency) { %>","<% dependency.repository_dependency_template = repository_dependency_template; %>","<%= repository_dependency_template(dependency) %>","<% }); %>","<% } %>","</li>","</ul>","</div>"].join("")),templateRepoDependency:i.template(['<li id="metadata_<%= id %>" class="datasetRow repository_dependency_row">',"Repository <b><%= repository.name %></b> revision <b><%= changeset_revision %></b> owned by <b><%= repository.owner %></b>","<% if (has_repository_dependencies) { %>",'<ul class="child_dependencies">',"<% _.each(repository_dependencies, function(dependency) { %>","<% dependency.repository_dependency_template = repository_dependency_template; %>","<%= repository_dependency_template(dependency) %>","<% }); %>","</ul>","<% } %>","</li>"].join("")),templateShedToolConf:i.template(['<div class="toolFormTitle">Shed tool configuration file:</div>','<div class="toolFormBody">','<div class="form-row">',"<%= stc_html %>",'<div class="toolParamHelp" style="clear: both;">Select the file whose <b>tool_path</b> setting you want used for installing repositories.</div>',"</div>","</div>"].join("")),templateToolDependency:i.template(["<% if (has_repository_dependencies) { %>","<% _.each(repository_dependencies, function(dependency) { %>","<% if (dependency.includes_tool_dependencies) { %>","<% dependency.tool_dependency_template = tool_dependency_template %>","<%= tool_dependency_template(dependency) %>","<% } %>","<% }); %>","<% } %>"].join("")),templateGlobalSectionCreate:i.template(['<div id="tool_panel_section">','<div class="form-row" id="new_tps">','<input id="new_tool_panel_section" name="new_tool_panel_section" type="textfield" value="" size="40"/>','<input class="btn btn-primary" type="button" id="select_existing" value="Select existing" />','<div class="toolParamHelp" style="clear: both;">',"Add a new tool panel section to contain the installed tools (optional).","</div>","</div>","</div>"].join("")),templateGlobalSectionSelect:i.template(['<div id="tool_panel_section">','<div class="toolFormTitle">Tool Panel Section</div>','<div class="toolFormBody">','<div class="tab-pane" id="select_tps">','<select name="<%= name %>" id="<%= tps.id %>">',"<%= tps_select_options({sections: tps.sections}) %>","</select>",'<input class="btn btn-primary" type="button" id="create_new" value="Create new" />','<div class="toolParamHelp" style="clear: both;">',"Select an existing tool panel section to contain the installed tools (optional).","</div>","</div>","</div>","</div>"].join("")),templateToolSectionCreate:i.template(['<div id="new_tps_<%= tool.clean %>" data-clean="<%= tool.clean %>" class="form-row">','<input data-toolguid="<%= tool.guid %>" class="tool_panel_section_picker" size="40" name="new_tool_panel_section" id="new_tool_panel_section_<%= tool.clean %>" type="text">','<input id="per_tool_select_<%= tool.clean %>" class="btn btn-primary" data-toolguid="<%= tool.guid %>" value="Select existing" id="select_existing_<%= tool.clean %>" type="button">',"</div>"].join("")),templateToolSectionSelect:i.template(['<div id="select_tps_<%= tool.clean %>" data-clean="<%= tool.clean %>" class="tps_creator">','<select default="active" style="width: 30em;" data-toolguid="<%= tool.guid %>" class="tool_panel_section_picker" name="tool_panel_section_id" id="tool_panel_section_select_<%= tool.clean %>">',"<%= tps_select_options({sections: tps.sections}) %>","</select>",'<input id="per_tool_create_<%= tool.clean %>" data-clean="<%= tool.clean %>" class="btn btn-primary create-tps-button" data-toolguid="<%= tool.guid %>" value="Create new" id="create_new_<%= tool.clean %>" type="button">','<div style="clear: both;" class="toolParamHelp"></div>',"</div>"].join("")),templatePanelSelectOptions:i.template(["<% _.each(sections, function(section) { %>",'<option value="<%= section.id %>"><%= section.name %></option>',"<% }); %>"].join(""))});t.default={RepoDetails:m}}).call(t,n(2),n(1),n(0))},311:function(e,t,n){"use strict";(function(e,i,r){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=n(3),s=a(o),l=n(17),c=a(l),d=n(18),u=a(d),h=e.View.extend({el:"#center",defaults:[{}],initialize:function(e){var t=this;this.model=new c.default.RepoQueue,this.listenTo(this.model,"sync",this.render),this.model.fetch(),t.render()},render:function(e){var t=this,n=t.templateRepoQueue,r=t.model.models;t.$el.html(n({title:(0,s.default)("Repository Installation Queue"),repositories:r,queue:u.default.queueLength()})),i("#center").css("overflow","auto"),t.bindEvents()},bindEvents:function(){var t=this;i(".install_one").on("click",function(){var e=t.loadFromQueue(i(this).attr("data-repokey"));t.installFromQueue(e,i(this).attr("data-repokey"))}),i(".remove_one").on("click",function(){var e=i(this).attr("data-repokey"),t=JSON.parse(localStorage.repositories);if(t.hasOwnProperty(e)){var n=t[e].repository.id;delete t[e],i("#queued_repository_"+n).remove()}localStorage.repositories=JSON.stringify(t)}),i("#clear_queue").on("click",function(){localStorage.repositories="{}"}),i("#from_workflow").on("click",function(){e.history.navigate("workflows",{trigger:!0,replace:!0})})},installFromQueue:function(t,n){var r=Object();r.install_tool_dependencies=t.install_tool_dependencies,r.install_repository_dependencies=t.install_repository_dependencies,r.install_resolver_dependencies=t.install_resolver_dependencies,r.tool_panel_section=t.tool_panel_section,r.shed_tool_conf=t.shed_tool_conf,r.repositories=JSON.stringify([[t.repository.id,t.changeset_revision]]),r.tool_shed_repository_ids=JSON.stringify([t.repository.id]),r.tool_shed_url=n.split("|")[0],r.changeset=t.changeset_revision;var a=Galaxy.root+"api/tool_shed_repositories/install?async=True";if(i("#queued_repository_"+t.repository.id).remove(),localStorage.repositories){void 0===n&&(n=u.default.queueKey(t));var o=JSON.parse(localStorage.repositories);o.hasOwnProperty(n)&&(delete o[n],localStorage.repositories=JSON.stringify(o))}i.post(a,r,function(t){var n=JSON.parse(t),r=n.repositories,a="status/r/"+r.join("|");i.post(Galaxy.root+"admin_toolshed/install_repositories",n,function(e){console.log("Initializing repository installation succeeded")}),e.history.navigate(a,{trigger:!0,replace:!0})})},loadFromQueue:function(e){var t=JSON.parse(localStorage.repositories);if(t.hasOwnProperty(e))return t[e]},reDraw:function(e){this.$el.empty(),this.initialize(e),this.model.fetch(),this.render(e)},templateRepoQueue:r.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner"><%= title %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<div class="tab-pane" id="panel_header" id="repository_queue">','<table id="queued_repositories" class="grid" border="0" cellpadding="2" cellspacing="2" width="100%">','<thead id="grid-table-header">',"<tr>",'<th class="datasetRow">Name</th>','<th class="datasetRow">Owner</th>','<th class="datasetRow">Revision</th>','<th class="datasetRow">ToolShed</th>','<th class="datasetRow">Install</th>','<th class="datasetRow"><input class="btn btn-primary" type="submit" id="clear_queue" name="clear_queue" value="Clear queue" /></th>',"</tr>","</thead>","<tbody>","<% _.each(repositories, function(repository) { %>",'<tr id="queued_repository_<%= repository.get("id") %>">','<td class="datasetRow"><%= repository.get("repository").name %></td>','<td class="datasetRow"><%= repository.get("repository").owner %></td>','<td class="datasetRow"><%= repository.get("changeset_revision") %></td>','<td class="datasetRow"><%= repository.get("tool_shed_url") %></td>','<td class="datasetRow">','<input class="btn btn-primary install_one" data-repokey="<%= repository.get("queue_key") %>" type="submit" id="install_repository_<%= repository.get("id") %>" name="install_repository" value="Install now" />',"</td>",'<td class="datasetRow">','<input class="btn btn-primary remove_one" data-repokey="<%= repository.get("queue_key") %>" type="submit" id="unqueue_repository_<%= repository.get("id") %>" 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r=this._removeModels(t,e);return!e.silent&&r.length&&(e.changes={added:[],merged:[],removed:r},this.trigger("update",this,e)),n?r[0]:r},set:function(t,e){if(null!=t){e=i.extend({},w,e),e.parse&&!this._isModel(t)&&(t=this.parse(t,e)||[]);var n=!i.isArray(t);t=n?[t]:t.slice();var r=e.at;null!=r&&(r=+r),r>this.length&&(r=this.length),r<0&&(r+=this.length+1);var a,o,s=[],l=[],c=[],u=[],h={},d=e.add,f=e.merge,p=e.remove,m=!1,v=this.comparator&&null==r&&!1!==e.sort,g=i.isString(this.comparator)?this.comparator:null;for(o=0;o<t.length;o++){a=t[o];var _=this.get(a);if(_){if(f&&a!==_){var y=this._isModel(a)?a.attributes:a;e.parse&&(y=_.parse(y,e)),_.set(y,e),c.push(_),v&&!m&&(m=_.hasChanged(g))}h[_.cid]||(h[_.cid]=!0,s.push(_)),t[o]=_}else d&&(a=t[o]=this._prepareModel(a,e))&&(l.push(a),this._addReference(a,e),h[a.cid]=!0,s.push(a))}if(p){for(o=0;o<this.length;o++)a=this.models[o],h[a.cid]||u.push(a);u.length&&this._removeModels(u,e)}var b=!1,x=!v&&d&&p;if(s.length&&x?(b=this.length!==s.length||i.some(this.models,function(t,e){return t!==s[e]}),this.models.length=0,k(this.models,s,0),this.length=this.models.length):l.length&&(v&&(m=!0),k(this.models,l,null==r?this.length:r),this.length=this.models.length),m&&this.sort({silent:!0}),!e.silent){for(o=0;o<l.length;o++)null!=r&&(e.index=r+o),a=l[o],a.trigger("add",a,this,e);(m||b)&&this.trigger("sort",this,e),(l.length||u.length||c.length)&&(e.changes={added:l,removed:u,merged:c},this.trigger("update",this,e))}return n?t[0]:t}},reset:function(t,e){e=e?i.clone(e):{};for(var n=0;n<this.models.length;n++)this._removeReference(this.models[n],e);return e.previousModels=this.models,this._reset(),t=this.add(t,i.extend({silent:!0},e)),e.silent||this.trigger("reset",this,e),t},push:function(t,e){return this.add(t,i.extend({at:this.length},e))},pop:function(t){var e=this.at(this.length-1);return this.remove(e,t)},unshift:function(t,e){return this.add(t,i.extend({at:0},e))},shift:function(t){var e=this.at(0);return this.remove(e,t)},slice:function(){return a.apply(this.models,arguments)},get:function(t){if(null!=t)return this._byId[t]||this._byId[this.modelId(t.attributes||t)]||t.cid&&this._byId[t.cid]},has:function(t){return null!=this.get(t)},at:function(t){return t<0&&(t+=this.length),this.models[t]},where:function(t,e){return this[e?"find":"filter"](t)},findWhere:function(t){return this.where(t,!0)},sort:function(t){var e=this.comparator;if(!e)throw new Error("Cannot sort a set without a comparator");t||(t={});var n=e.length;return i.isFunction(e)&&(e=i.bind(e,this)),1===n||i.isString(e)?this.models=this.sortBy(e):this.models.sort(e),t.silent||this.trigger("sort",this,t),this},pluck:function(t){return this.map(t+"")},fetch:function(t){t=i.extend({parse:!0},t);var e=t.success,n=this;return t.success=function(i){var r=t.reset?"reset":"set";n[r](i,t),e&&e.call(t.context,n,i,t),n.trigger("sync",n,i,t)},H(this,t),this.sync("read",this,t)},create:function(t,e){e=e?i.clone(e):{};var n=e.wait;if(!(t=this._prepareModel(t,e)))return!1;n||this.add(t,e);var r=this,a=e.success;return e.success=function(t,e,i){n&&r.add(t,i),a&&a.call(i.context,t,e,i)},t.save(null,e),t},parse:function(t,e){return t},clone:function(){return new this.constructor(this.models,{model:this.model,comparator:this.comparator})},modelId:function(t){return t[this.model.prototype.idAttribute||"id"]},_reset:function(){this.length=0,this.models=[],this._byId={}},_prepareModel:function(t,e){if(this._isModel(t))return t.collection||(t.collection=this),t;e=e?i.clone(e):{},e.collection=this;var n=new this.model(t,e);return n.validationError?(this.trigger("invalid",this,n.validationError,e),!1):n},_removeModels:function(t,e){for(var i=[],n=0;n<t.length;n++){var r=this.get(t[n]);if(r){var a=this.indexOf(r);this.models.splice(a,1),this.length--,delete this._byId[r.cid];var o=this.modelId(r.attributes);null!=o&&delete this._byId[o],e.silent||(e.index=a,r.trigger("remove",r,this,e)),i.push(r),this._removeReference(r,e)}}return i},_isModel:function(t){return t instanceof y},_addReference:function(t,e){this._byId[t.cid]=t;var i=this.modelId(t.attributes);null!=i&&(this._byId[i]=t),t.on("all",this._onModelEvent,this)},_removeReference:function(t,e){delete this._byId[t.cid];var i=this.modelId(t.attributes);null!=i&&delete this._byId[i],this===t.collection&&delete t.collection,t.off("all",this._onModelEvent,this)},_onModelEvent:function(t,e,i,n){if(e){if(("add"===t||"remove"===t)&&i!==this)return;if("destroy"===t&&this.remove(e,n),"change"===t){var r=this.modelId(e.previousAttributes()),a=this.modelId(e.attributes);r!==a&&(null!=r&&delete this._byId[r],null!=a&&(this._byId[a]=e))}}this.trigger.apply(this,arguments)}}),s(b,{forEach:3,each:3,map:3,collect:3,reduce:0,foldl:0,inject:0,reduceRight:0,foldr:0,find:3,detect:3,filter:3,select:3,reject:3,every:3,all:3,some:3,any:3,include:3,includes:3,contains:3,invoke:0,max:3,min:3,toArray:1,size:1,first:3,head:3,take:3,initial:3,rest:3,tail:3,drop:3,last:3,without:0,difference:0,indexOf:3,shuffle:1,lastIndexOf:3,isEmpty:1,chain:1,sample:3,partition:3,groupBy:3,countBy:3,sortBy:3,indexBy:3,findIndex:3,findLastIndex:3},"models");var C=e.View=function(t){this.cid=i.uniqueId("view"),i.extend(this,i.pick(t,T)),this._ensureElement(),this.initialize.apply(this,arguments)},S=/^(\S+)\s*(.*)$/,T=["model","collection","el","id","attributes","className","tagName","events"];i.extend(C.prototype,u,{tagName:"div",$:function(t){return this.$el.find(t)},initialize:function(){},render:function(){return this},remove:function(){return this._removeElement(),this.stopListening(),this},_removeElement:function(){this.$el.remove()},setElement:function(t){return this.undelegateEvents(),this._setElement(t),this.delegateEvents(),this},_setElement:function(t){this.$el=t instanceof e.$?t:e.$(t),this.el=this.$el[0]},delegateEvents:function(t){if(t||(t=i.result(this,"events")),!t)return this;this.undelegateEvents();for(var e in t){var n=t[e];if(i.isFunction(n)||(n=this[n]),n){var r=e.match(S);this.delegate(r[1],r[2],i.bind(n,this))}}return this},delegate:function(t,e,i){return this.$el.on(t+".delegateEvents"+this.cid,e,i),this},undelegateEvents:function(){return this.$el&&this.$el.off(".delegateEvents"+this.cid),this},undelegate:function(t,e,i){return this.$el.off(t+".delegateEvents"+this.cid,e,i),this},_createElement:function(t){return document.createElement(t)},_ensureElement:function(){if(this.el)this.setElement(i.result(this,"el"));else{var t=i.extend({},i.result(this,"attributes"));this.id&&(t.id=i.result(this,"id")),this.className&&(t.class=i.result(this,"className")),this.setElement(this._createElement(i.result(this,"tagName"))),this._setAttributes(t)}},_setAttributes:function(t){this.$el.attr(t)}}),e.sync=function(t,n,r){var a=A[t];i.defaults(r||(r={}),{emulateHTTP:e.emulateHTTP,emulateJSON:e.emulateJSON});var o={type:a,dataType:"json"};if(r.url||(o.url=i.result(n,"url")||L()),null!=r.data||!n||"create"!==t&&"update"!==t&&"patch"!==t||(o.contentType="application/json",o.data=JSON.stringify(r.attrs||n.toJSON(r))),r.emulateJSON&&(o.contentType="application/x-www-form-urlencoded",o.data=o.data?{model:o.data}:{}),r.emulateHTTP&&("PUT"===a||"DELETE"===a||"PATCH"===a)){o.type="POST",r.emulateJSON&&(o.data._method=a);var s=r.beforeSend;r.beforeSend=function(t){if(t.setRequestHeader("X-HTTP-Method-Override",a),s)return s.apply(this,arguments)}}"GET"===o.type||r.emulateJSON||(o.processData=!1);var l=r.error;r.error=function(t,e,i){r.textStatus=e,r.errorThrown=i,l&&l.call(r.context,t,e,i)};var c=r.xhr=e.ajax(i.extend(o,r));return n.trigger("request",n,c,r),c};var A={create:"POST",update:"PUT",patch:"PATCH",delete:"DELETE",read:"GET"};e.ajax=function(){return e.$.ajax.apply(e.$,arguments)};var M=e.Router=function(t){t||(t={}),t.routes&&(this.routes=t.routes),this._bindRoutes(),this.initialize.apply(this,arguments)},E=/\((.*?)\)/g,O=/(\(\?)?:\w+/g,$=/\*\w+/g,j=/[\-{}\[\]+?.,\\\^$|#\s]/g;i.extend(M.prototype,u,{initialize:function(){},route:function(t,n,r){i.isRegExp(t)||(t=this._routeToRegExp(t)),i.isFunction(n)&&(r=n,n=""),r||(r=this[n]);var a=this;return e.history.route(t,function(i){var o=a._extractParameters(t,i);!1!==a.execute(r,o,n)&&(a.trigger.apply(a,["route:"+n].concat(o)),a.trigger("route",n,o),e.history.trigger("route",a,n,o))}),this},execute:function(t,e,i){t&&t.apply(this,e)},navigate:function(t,i){return e.history.navigate(t,i),this},_bindRoutes:function(){if(this.routes){this.routes=i.result(this,"routes");for(var t,e=i.keys(this.routes);null!=(t=e.pop());)this.route(t,this.routes[t])}},_routeToRegExp:function(t){return t=t.replace(j,"\\$&").replace(E,"(?:$1)?").replace(O,function(t,e){return e?t:"([^/?]+)"}).replace($,"([^?]*?)"),new RegExp("^"+t+"(?:\\?([\\s\\S]*))?$")},_extractParameters:function(t,e){var n=t.exec(e).slice(1);return i.map(n,function(t,e){return e===n.length-1?t||null:t?decodeURIComponent(t):null})}});var D=e.History=function(){this.handlers=[],this.checkUrl=i.bind(this.checkUrl,this),"undefined"!=typeof window&&(this.location=window.location,this.history=window.history)},P=/^[#\/]|\s+$/g,R=/^\/+|\/+$/g,N=/#.*$/;D.started=!1,i.extend(D.prototype,u,{interval:50,atRoot:function(){return this.location.pathname.replace(/[^\/]$/,"$&/")===this.root&&!this.getSearch()},matchRoot:function(){return this.decodeFragment(this.location.pathname).slice(0,this.root.length-1)+"/"===this.root},decodeFragment:function(t){return decodeURI(t.replace(/%25/g,"%2525"))},getSearch:function(){var t=this.location.href.replace(/#.*/,"").match(/\?.+/);return t?t[0]:""},getHash:function(t){var e=(t||this).location.href.match(/#(.*)$/);return e?e[1]:""},getPath:function(){var t=this.decodeFragment(this.location.pathname+this.getSearch()).slice(this.root.length-1);return"/"===t.charAt(0)?t.slice(1):t},getFragment:function(t){return null==t&&(t=this._usePushState||!this._wantsHashChange?this.getPath():this.getHash()),t.replace(P,"")},start:function(t){if(D.started)throw new Error("Backbone.history has already been started");if(D.started=!0,this.options=i.extend({root:"/"},this.options,t),this.root=this.options.root,this._wantsHashChange=!1!==this.options.hashChange,this._hasHashChange="onhashchange"in window&&(void 0===document.documentMode||document.documentMode>7),this._useHashChange=this._wantsHashChange&&this._hasHashChange,this._wantsPushState=!!this.options.pushState,this._hasPushState=!(!this.history||!this.history.pushState),this._usePushState=this._wantsPushState&&this._hasPushState,this.fragment=this.getFragment(),this.root=("/"+this.root+"/").replace(R,"/"),this._wantsHashChange&&this._wantsPushState){if(!this._hasPushState&&!this.atRoot()){var e=this.root.slice(0,-1)||"/";return this.location.replace(e+"#"+this.getPath()),!0}this._hasPushState&&this.atRoot()&&this.navigate(this.getHash(),{replace:!0})}if(!this._hasHashChange&&this._wantsHashChange&&!this._usePushState){this.iframe=document.createElement("iframe"),this.iframe.src="javascript:0",this.iframe.style.display="none",this.iframe.tabIndex=-1;var n=document.body,r=n.insertBefore(this.iframe,n.firstChild).contentWindow;r.document.open(),r.document.close(),r.location.hash="#"+this.fragment}var a=window.addEventListener||function(t,e){return attachEvent("on"+t,e)};if(this._usePushState?a("popstate",this.checkUrl,!1):this._useHashChange&&!this.iframe?a("hashchange",this.checkUrl,!1):this._wantsHashChange&&(this._checkUrlInterval=setInterval(this.checkUrl,this.interval)),!this.options.silent)return this.loadUrl()},stop:function(){var t=window.removeEventListener||function(t,e){return detachEvent("on"+t,e)};this._usePushState?t("popstate",this.checkUrl,!1):this._useHashChange&&!this.iframe&&t("hashchange",this.checkUrl,!1),this.iframe&&(document.body.removeChild(this.iframe),this.iframe=null),this._checkUrlInterval&&clearInterval(this._checkUrlInterval),D.started=!1},route:function(t,e){this.handlers.unshift({route:t,callback:e})},checkUrl:function(t){var e=this.getFragment();if(e===this.fragment&&this.iframe&&(e=this.getHash(this.iframe.contentWindow)),e===this.fragment)return!1;this.iframe&&this.navigate(e),this.loadUrl()},loadUrl:function(t){return!!this.matchRoot()&&(t=this.fragment=this.getFragment(t),i.some(this.handlers,function(e){if(e.route.test(t))return e.callback(t),!0}))},navigate:function(t,e){if(!D.started)return!1;e&&!0!==e||(e={trigger:!!e}),t=this.getFragment(t||"");var i=this.root;""!==t&&"?"!==t.charAt(0)||(i=i.slice(0,-1)||"/");var n=i+t;if(t=this.decodeFragment(t.replace(N,"")),this.fragment!==t){if(this.fragment=t,this._usePushState)this.history[e.replace?"replaceState":"pushState"]({},document.title,n);else{if(!this._wantsHashChange)return this.location.assign(n);if(this._updateHash(this.location,t,e.replace),this.iframe&&t!==this.getHash(this.iframe.contentWindow)){var r=this.iframe.contentWindow;e.replace||(r.document.open(),r.document.close()),this._updateHash(r.location,t,e.replace)}}return 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r=this._removeModels(t,e);return!e.silent&&r.length&&(e.changes={added:[],merged:[],removed:r},this.trigger("update",this,e)),n?r[0]:r},set:function(t,e){if(null!=t){e=i.extend({},w,e),e.parse&&!this._isModel(t)&&(t=this.parse(t,e)||[]);var n=!i.isArray(t);t=n?[t]:t.slice();var r=e.at;null!=r&&(r=+r),r>this.length&&(r=this.length),r<0&&(r+=this.length+1);var a,o,s=[],l=[],u=[],c=[],h={},d=e.add,f=e.merge,p=e.remove,m=!1,v=this.comparator&&null==r&&!1!==e.sort,g=i.isString(this.comparator)?this.comparator:null;for(o=0;o<t.length;o++){a=t[o];var _=this.get(a);if(_){if(f&&a!==_){var y=this._isModel(a)?a.attributes:a;e.parse&&(y=_.parse(y,e)),_.set(y,e),u.push(_),v&&!m&&(m=_.hasChanged(g))}h[_.cid]||(h[_.cid]=!0,s.push(_)),t[o]=_}else d&&(a=t[o]=this._prepareModel(a,e))&&(l.push(a),this._addReference(a,e),h[a.cid]=!0,s.push(a))}if(p){for(o=0;o<this.length;o++)a=this.models[o],h[a.cid]||c.push(a);c.length&&this._removeModels(c,e)}var b=!1,x=!v&&d&&p;if(s.length&&x?(b=this.length!==s.length||i.some(this.models,function(t,e){return t!==s[e]}),this.models.length=0,k(this.models,s,0),this.length=this.models.length):l.length&&(v&&(m=!0),k(this.models,l,null==r?this.length:r),this.length=this.models.length),m&&this.sort({silent:!0}),!e.silent){for(o=0;o<l.length;o++)null!=r&&(e.index=r+o),a=l[o],a.trigger("add",a,this,e);(m||b)&&this.trigger("sort",this,e),(l.length||c.length||u.length)&&(e.changes={added:l,removed:c,merged:u},this.trigger("update",this,e))}return n?t[0]:t}},reset:function(t,e){e=e?i.clone(e):{};for(var n=0;n<this.models.length;n++)this._removeReference(this.models[n],e);return e.previousModels=this.models,this._reset(),t=this.add(t,i.extend({silent:!0},e)),e.silent||this.trigger("reset",this,e),t},push:function(t,e){return this.add(t,i.extend({at:this.length},e))},pop:function(t){var e=this.at(this.length-1);return this.remove(e,t)},unshift:function(t,e){return this.add(t,i.extend({at:0},e))},shift:function(t){var e=this.at(0);return this.remove(e,t)},slice:function(){return a.apply(this.models,arguments)},get:function(t){if(null!=t)return this._byId[t]||this._byId[this.modelId(t.attributes||t)]||t.cid&&this._byId[t.cid]},has:function(t){return null!=this.get(t)},at:function(t){return t<0&&(t+=this.length),this.models[t]},where:function(t,e){return this[e?"find":"filter"](t)},findWhere:function(t){return this.where(t,!0)},sort:function(t){var e=this.comparator;if(!e)throw new Error("Cannot sort a set without a comparator");t||(t={});var n=e.length;return i.isFunction(e)&&(e=i.bind(e,this)),1===n||i.isString(e)?this.models=this.sortBy(e):this.models.sort(e),t.silent||this.trigger("sort",this,t),this},pluck:function(t){return this.map(t+"")},fetch:function(t){t=i.extend({parse:!0},t);var e=t.success,n=this;return t.success=function(i){var r=t.reset?"reset":"set";n[r](i,t),e&&e.call(t.context,n,i,t),n.trigger("sync",n,i,t)},H(this,t),this.sync("read",this,t)},create:function(t,e){e=e?i.clone(e):{};var n=e.wait;if(!(t=this._prepareModel(t,e)))return!1;n||this.add(t,e);var r=this,a=e.success;return e.success=function(t,e,i){n&&r.add(t,i),a&&a.call(i.context,t,e,i)},t.save(null,e),t},parse:function(t,e){return t},clone:function(){return new this.constructor(this.models,{model:this.model,comparator:this.comparator})},modelId:function(t){return t[this.model.prototype.idAttribute||"id"]},_reset:function(){this.length=0,this.models=[],this._byId={}},_prepareModel:function(t,e){if(this._isModel(t))return t.collection||(t.collection=this),t;e=e?i.clone(e):{},e.collection=this;var n=new this.model(t,e);return n.validationError?(this.trigger("invalid",this,n.validationError,e),!1):n},_removeModels:function(t,e){for(var i=[],n=0;n<t.length;n++){var r=this.get(t[n]);if(r){var a=this.indexOf(r);this.models.splice(a,1),this.length--,delete this._byId[r.cid];var o=this.modelId(r.attributes);null!=o&&delete this._byId[o],e.silent||(e.index=a,r.trigger("remove",r,this,e)),i.push(r),this._removeReference(r,e)}}return i},_isModel:function(t){return t instanceof y},_addReference:function(t,e){this._byId[t.cid]=t;var i=this.modelId(t.attributes);null!=i&&(this._byId[i]=t),t.on("all",this._onModelEvent,this)},_removeReference:function(t,e){delete this._byId[t.cid];var i=this.modelId(t.attributes);null!=i&&delete this._byId[i],this===t.collection&&delete t.collection,t.off("all",this._onModelEvent,this)},_onModelEvent:function(t,e,i,n){if(e){if(("add"===t||"remove"===t)&&i!==this)return;if("destroy"===t&&this.remove(e,n),"change"===t){var r=this.modelId(e.previousAttributes()),a=this.modelId(e.attributes);r!==a&&(null!=r&&delete this._byId[r],null!=a&&(this._byId[a]=e))}}this.trigger.apply(this,arguments)}}),s(b,{forEach:3,each:3,map:3,collect:3,reduce:0,foldl:0,inject:0,reduceRight:0,foldr:0,find:3,detect:3,filter:3,select:3,reject:3,every:3,all:3,some:3,any:3,include:3,includes:3,contains:3,invoke:0,max:3,min:3,toArray:1,size:1,first:3,head:3,take:3,initial:3,rest:3,tail:3,drop:3,last:3,without:0,difference:0,indexOf:3,shuffle:1,lastIndexOf:3,isEmpty:1,chain:1,sample:3,partition:3,groupBy:3,countBy:3,sortBy:3,indexBy:3,findIndex:3,findLastIndex:3},"models");var C=e.View=function(t){this.cid=i.uniqueId("view"),i.extend(this,i.pick(t,T)),this._ensureElement(),this.initialize.apply(this,arguments)},S=/^(\S+)\s*(.*)$/,T=["model","collection","el","id","attributes","className","tagName","events"];i.extend(C.prototype,c,{tagName:"div",$:function(t){return this.$el.find(t)},initialize:function(){},render:function(){return this},remove:function(){return this._removeElement(),this.stopListening(),this},_removeElement:function(){this.$el.remove()},setElement:function(t){return this.undelegateEvents(),this._setElement(t),this.delegateEvents(),this},_setElement:function(t){this.$el=t instanceof e.$?t:e.$(t),this.el=this.$el[0]},delegateEvents:function(t){if(t||(t=i.result(this,"events")),!t)return this;this.undelegateEvents();for(var e in t){var n=t[e];if(i.isFunction(n)||(n=this[n]),n){var r=e.match(S);this.delegate(r[1],r[2],i.bind(n,this))}}return this},delegate:function(t,e,i){return this.$el.on(t+".delegateEvents"+this.cid,e,i),this},undelegateEvents:function(){return this.$el&&this.$el.off(".delegateEvents"+this.cid),this},undelegate:function(t,e,i){return this.$el.off(t+".delegateEvents"+this.cid,e,i),this},_createElement:function(t){return document.createElement(t)},_ensureElement:function(){if(this.el)this.setElement(i.result(this,"el"));else{var t=i.extend({},i.result(this,"attributes"));this.id&&(t.id=i.result(this,"id")),this.className&&(t.class=i.result(this,"className")),this.setElement(this._createElement(i.result(this,"tagName"))),this._setAttributes(t)}},_setAttributes:function(t){this.$el.attr(t)}}),e.sync=function(t,n,r){var a=M[t];i.defaults(r||(r={}),{emulateHTTP:e.emulateHTTP,emulateJSON:e.emulateJSON});var o={type:a,dataType:"json"};if(r.url||(o.url=i.result(n,"url")||L()),null!=r.data||!n||"create"!==t&&"update"!==t&&"patch"!==t||(o.contentType="application/json",o.data=JSON.stringify(r.attrs||n.toJSON(r))),r.emulateJSON&&(o.contentType="application/x-www-form-urlencoded",o.data=o.data?{model:o.data}:{}),r.emulateHTTP&&("PUT"===a||"DELETE"===a||"PATCH"===a)){o.type="POST",r.emulateJSON&&(o.data._method=a);var s=r.beforeSend;r.beforeSend=function(t){if(t.setRequestHeader("X-HTTP-Method-Override",a),s)return s.apply(this,arguments)}}"GET"===o.type||r.emulateJSON||(o.processData=!1);var l=r.error;r.error=function(t,e,i){r.textStatus=e,r.errorThrown=i,l&&l.call(r.context,t,e,i)};var u=r.xhr=e.ajax(i.extend(o,r));return n.trigger("request",n,u,r),u};var M={create:"POST",update:"PUT",patch:"PATCH",delete:"DELETE",read:"GET"};e.ajax=function(){return e.$.ajax.apply(e.$,arguments)};var A=e.Router=function(t){t||(t={}),t.routes&&(this.routes=t.routes),this._bindRoutes(),this.initialize.apply(this,arguments)},E=/\((.*?)\)/g,O=/(\(\?)?:\w+/g,$=/\*\w+/g,D=/[\-{}\[\]+?.,\\\^$|#\s]/g;i.extend(A.prototype,c,{initialize:function(){},route:function(t,n,r){i.isRegExp(t)||(t=this._routeToRegExp(t)),i.isFunction(n)&&(r=n,n=""),r||(r=this[n]);var a=this;return e.history.route(t,function(i){var o=a._extractParameters(t,i);!1!==a.execute(r,o,n)&&(a.trigger.apply(a,["route:"+n].concat(o)),a.trigger("route",n,o),e.history.trigger("route",a,n,o))}),this},execute:function(t,e,i){t&&t.apply(this,e)},navigate:function(t,i){return e.history.navigate(t,i),this},_bindRoutes:function(){if(this.routes){this.routes=i.result(this,"routes");for(var t,e=i.keys(this.routes);null!=(t=e.pop());)this.route(t,this.routes[t])}},_routeToRegExp:function(t){return t=t.replace(D,"\\$&").replace(E,"(?:$1)?").replace(O,function(t,e){return e?t:"([^/?]+)"}).replace($,"([^?]*?)"),new RegExp("^"+t+"(?:\\?([\\s\\S]*))?$")},_extractParameters:function(t,e){var n=t.exec(e).slice(1);return i.map(n,function(t,e){return e===n.length-1?t||null:t?decodeURIComponent(t):null})}});var j=e.History=function(){this.handlers=[],this.checkUrl=i.bind(this.checkUrl,this),"undefined"!=typeof window&&(this.location=window.location,this.history=window.history)},P=/^[#\/]|\s+$/g,R=/^\/+|\/+$/g,N=/#.*$/;j.started=!1,i.extend(j.prototype,c,{interval:50,atRoot:function(){return this.location.pathname.replace(/[^\/]$/,"$&/")===this.root&&!this.getSearch()},matchRoot:function(){return this.decodeFragment(this.location.pathname).slice(0,this.root.length-1)+"/"===this.root},decodeFragment:function(t){return decodeURI(t.replace(/%25/g,"%2525"))},getSearch:function(){var t=this.location.href.replace(/#.*/,"").match(/\?.+/);return t?t[0]:""},getHash:function(t){var e=(t||this).location.href.match(/#(.*)$/);return e?e[1]:""},getPath:function(){var t=this.decodeFragment(this.location.pathname+this.getSearch()).slice(this.root.length-1);return"/"===t.charAt(0)?t.slice(1):t},getFragment:function(t){return null==t&&(t=this._usePushState||!this._wantsHashChange?this.getPath():this.getHash()),t.replace(P,"")},start:function(t){if(j.started)throw new Error("Backbone.history has already been started");if(j.started=!0,this.options=i.extend({root:"/"},this.options,t),this.root=this.options.root,this._wantsHashChange=!1!==this.options.hashChange,this._hasHashChange="onhashchange"in window&&(void 0===document.documentMode||document.documentMode>7),this._useHashChange=this._wantsHashChange&&this._hasHashChange,this._wantsPushState=!!this.options.pushState,this._hasPushState=!(!this.history||!this.history.pushState),this._usePushState=this._wantsPushState&&this._hasPushState,this.fragment=this.getFragment(),this.root=("/"+this.root+"/").replace(R,"/"),this._wantsHashChange&&this._wantsPushState){if(!this._hasPushState&&!this.atRoot()){var e=this.root.slice(0,-1)||"/";return this.location.replace(e+"#"+this.getPath()),!0}this._hasPushState&&this.atRoot()&&this.navigate(this.getHash(),{replace:!0})}if(!this._hasHashChange&&this._wantsHashChange&&!this._usePushState){this.iframe=document.createElement("iframe"),this.iframe.src="javascript:0",this.iframe.style.display="none",this.iframe.tabIndex=-1;var n=document.body,r=n.insertBefore(this.iframe,n.firstChild).contentWindow;r.document.open(),r.document.close(),r.location.hash="#"+this.fragment}var a=window.addEventListener||function(t,e){return attachEvent("on"+t,e)};if(this._usePushState?a("popstate",this.checkUrl,!1):this._useHashChange&&!this.iframe?a("hashchange",this.checkUrl,!1):this._wantsHashChange&&(this._checkUrlInterval=setInterval(this.checkUrl,this.interval)),!this.options.silent)return this.loadUrl()},stop:function(){var t=window.removeEventListener||function(t,e){return detachEvent("on"+t,e)};this._usePushState?t("popstate",this.checkUrl,!1):this._useHashChange&&!this.iframe&&t("hashchange",this.checkUrl,!1),this.iframe&&(document.body.removeChild(this.iframe),this.iframe=null),this._checkUrlInterval&&clearInterval(this._checkUrlInterval),j.started=!1},route:function(t,e){this.handlers.unshift({route:t,callback:e})},checkUrl:function(t){var e=this.getFragment();if(e===this.fragment&&this.iframe&&(e=this.getHash(this.iframe.contentWindow)),e===this.fragment)return!1;this.iframe&&this.navigate(e),this.loadUrl()},loadUrl:function(t){return!!this.matchRoot()&&(t=this.fragment=this.getFragment(t),i.some(this.handlers,function(e){if(e.route.test(t))return e.callback(t),!0}))},navigate:function(t,e){if(!j.started)return!1;e&&!0!==e||(e={trigger:!!e}),t=this.getFragment(t||"");var i=this.root;""!==t&&"?"!==t.charAt(0)||(i=i.slice(0,-1)||"/");var n=i+t;if(t=this.decodeFragment(t.replace(N,"")),this.fragment!==t){if(this.fragment=t,this._usePushState)this.history[e.replace?"replaceState":"pushState"]({},document.title,n);else{if(!this._wantsHashChange)return this.location.assign(n);if(this._updateHash(this.location,t,e.replace),this.iframe&&t!==this.getHash(this.iframe.contentWindow)){var r=this.iframe.contentWindow;e.replace||(r.document.open(),r.document.close()),this._updateHash(r.location,t,e.replace)}}return e.trigger?this.loadUrl(t):void 0}},_updateHash:function(t,e,i){if(i){var n=t.href.replace(/(javascript:|#).*$/,"");t.replace(n+"#"+e)}else t.hash="#"+e}}),e.history=new j;var I=function(t,e){var n,r=this;return n=t&&i.has(t,"constructor")?t.constructor:function(){return r.apply(this,arguments)},i.extend(n,r,e),n.prototype=i.create(r.prototype,t),n.prototype.constructor=n,n.__super__=r.prototype,n};y.extend=b.extend=A.extend=C.extend=j.extend=I;var L=function(){throw new Error('A "url" property or function must be specified')},H=function(t,e){var i=e.error;e.error=function(n){i&&i.call(e.context,t,n,e),t.trigger("error",t,n,e)}};return e})}).call(e,i(76))},function(t,e,i){var n,r;n=[i(139)],void 0!==(r=function(t){if(t.hasOwnProperty("__root")){var e="undefined"==typeof navigator?"__root":(navigator.language||navigator.userLanguage||"__root").toLowerCase();t=t["__"+e]||t["__"+e.split("-")[0]]||t.__root}var i=function(e){return t[e]||e};return 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e=t.from_str.split(":"),i=e[0],n=e[1].split("-");this.set({chrom:i,start:parseInt(n[0],10),end:parseInt(n[1],10)})}this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end"),this.on("change",function(){this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end")},this)},copy:function(){return new M({chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")})},length:function(){return this.get("end")-this.get("start")},toString:function(){return this.attributes.str_val},toJSON:function(){return{chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")}},compute_overlap:function(t){var e=this.get("chrom"),i=t.get("chrom"),n=this.get("start"),r=t.get("start"),a=this.get("end"),o=t.get("end");return e&&i&&e!==i?M.overlap_results.DIF_CHROMS:n<r?a<r?M.overlap_results.BEFORE:a<o?M.overlap_results.OVERLAP_START:M.overlap_results.CONTAINS:n>r?n>o?M.overlap_results.AFTER:a<=o?M.overlap_results.CONTAINED_BY:M.overlap_results.OVERLAP_END:a>=o?M.overlap_results.CONTAINS:M.overlap_results.CONTAINED_BY},trim:function(t){if(this.attributes.start<0&&(this.attributes.start=0),this.attributes.genome){var e=this.attributes.genome.get_chrom_len(this.attributes.chrom);this.attributes.end>e&&(this.attributes.end=e-1)}return this},contains:function(t){return this.compute_overlap(t)===M.overlap_results.CONTAINS},overlaps:function(t){return 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i=0;t.widget("ui.autocomplete",{version:"1.9.1",defaultElement:"<input>",options:{appendTo:"body",autoFocus:!1,delay:300,minLength:1,position:{my:"left top",at:"left bottom",collision:"none"},source:null,change:null,close:null,focus:null,open:null,response:null,search:null,select:null},pending:0,_create:function(){var e,i,n;this.isMultiLine=this._isMultiLine(),this.valueMethod=this.element[this.element.is("input,textarea")?"val":"text"],this.isNewMenu=!0,this.element.addClass("ui-autocomplete-input").attr("autocomplete","off"),this._on(this.element,{keydown:function(r){if(this.element.prop("readOnly"))return e=!0,n=!0,i=!0,void 0;e=!1,n=!1,i=!1;var a=t.ui.keyCode;switch(r.keyCode){case a.PAGE_UP:e=!0,this._move("previousPage",r);break;case a.PAGE_DOWN:e=!0,this._move("nextPage",r);break;case a.UP:e=!0,this._keyEvent("previous",r);break;case a.DOWN:e=!0,this._keyEvent("next",r);break;case a.ENTER:case a.NUMPAD_ENTER:this.menu.active&&(e=!0,r.preventDefault(),this.menu.select(r));break;case a.TAB:this.menu.active&&this.menu.select(r);break;case a.ESCAPE:this.menu.element.is(":visible")&&(this._value(this.term),this.close(r),r.preventDefault());break;default:i=!0,this._searchTimeout(r)}},keypress:function(n){if(e)return e=!1,void n.preventDefault();if(!i){var r=t.ui.keyCode;switch(n.keyCode){case r.PAGE_UP:this._move("previousPage",n);break;case r.PAGE_DOWN:this._move("nextPage",n);break;case r.UP:this._keyEvent("previous",n);break;case r.DOWN:this._keyEvent("next",n)}}},input:function(t){if(n)return n=!1,void t.preventDefault();this._searchTimeout(t)},focus:function(){this.selectedItem=null,this.previous=this._value()},blur:function(t){if(this.cancelBlur)return void delete this.cancelBlur;clearTimeout(this.searching),this.close(t),this._change(t)}}),this._initSource(),this.menu=t("<ul>").addClass("ui-autocomplete").appendTo(this.document.find(this.options.appendTo||"body")[0]).menu({input:t(),role:null}).zIndex(this.element.zIndex()+1).hide().data("menu"),this._on(this.menu.element,{mousedown:function(e){e.preventDefault(),this.cancelBlur=!0,this._delay(function(){delete this.cancelBlur});var i=this.menu.element[0];t(e.target).closest(".ui-menu-item").length||this._delay(function(){var e=this;this.document.one("mousedown",function(n){n.target!==e.element[0]&&n.target!==i&&!t.contains(i,n.target)&&e.close()})})},menufocus:function(e,i){if(this.isNewMenu&&(this.isNewMenu=!1,e.originalEvent&&/^mouse/.test(e.originalEvent.type)))return this.menu.blur(),void this.document.one("mousemove",function(){t(e.target).trigger(e.originalEvent)});var n=i.item.data("ui-autocomplete-item")||i.item.data("item.autocomplete");!1!==this._trigger("focus",e,{item:n})?e.originalEvent&&/^key/.test(e.originalEvent.type)&&this._value(n.value):this.liveRegion.text(n.value)},menuselect:function(t,e){var i=e.item.data("ui-autocomplete-item")||e.item.data("item.autocomplete"),n=this.previous;this.element[0]!==this.document[0].activeElement&&(this.element.focus(),this.previous=n,this._delay(function(){this.previous=n,this.selectedItem=i})),!1!==this._trigger("select",t,{item:i})&&this._value(i.value),this.term=this._value(),this.close(t),this.selectedItem=i}}),this.liveRegion=t("<span>",{role:"status","aria-live":"polite"}).addClass("ui-helper-hidden-accessible").insertAfter(this.element),t.fn.bgiframe&&this.menu.element.bgiframe(),this._on(this.window,{beforeunload:function(){this.element.removeAttr("autocomplete")}})},_destroy:function(){clearTimeout(this.searching),this.element.removeClass("ui-autocomplete-input").removeAttr("autocomplete"),this.menu.element.remove(),this.liveRegion.remove()},_setOption:function(t,e){this._super(t,e),"source"===t&&this._initSource(),"appendTo"===t&&this.menu.element.appendTo(this.document.find(e||"body")[0]),"disabled"===t&&e&&this.xhr&&this.xhr.abort()},_isMultiLine:function(){return!!this.element.is("textarea")||!this.element.is("input")&&this.element.prop("isContentEditable")},_initSource:function(){var e,i,n=this;t.isArray(this.options.source)?(e=this.options.source,this.source=function(i,n){n(t.ui.autocomplete.filter(e,i.term))}):"string"==typeof this.options.source?(i=this.options.source,this.source=function(e,r){n.xhr&&n.xhr.abort(),n.xhr=t.ajax({url:i,data:e,dataType:"json",success:function(t){r(t)},error:function(){r([])}})}):this.source=this.options.source},_searchTimeout:function(t){clearTimeout(this.searching),this.searching=this._delay(function(){this.term!==this._value()&&(this.selectedItem=null,this.search(null,t))},this.options.delay)},search:function(t,e){return t=null!=t?t:this._value(),this.term=this._value(),t.length<this.options.minLength?this.close(e):!1!==this._trigger("search",e)?this._search(t):void 0},_search:function(t){this.pending++,this.element.addClass("ui-autocomplete-loading"),this.cancelSearch=!1,this.source({term:t},this._response())},_response:function(){var t=this,e=++i;return function(n){e===i&&t.__response(n),--t.pending||t.element.removeClass("ui-autocomplete-loading")}},__response:function(t){t&&(t=this._normalize(t)),this._trigger("response",null,{content:t}),!this.options.disabled&&t&&t.length&&!this.cancelSearch?(this._suggest(t),this._trigger("open")):this._close()},close:function(t){this.cancelSearch=!0,this._close(t)},_close:function(t){this.menu.element.is(":visible")&&(this.menu.element.hide(),this.menu.blur(),this.isNewMenu=!0,this._trigger("close",t))},_change:function(t){this.previous!==this._value()&&this._trigger("change",t,{item:this.selectedItem})},_normalize:function(e){return e.length&&e[0].label&&e[0].value?e:t.map(e,function(e){return"string"==typeof e?{label:e,value:e}:t.extend({label:e.label||e.value,value:e.value||e.label},e)})},_suggest:function(e){var i=this.menu.element.empty().zIndex(this.element.zIndex()+1);this._renderMenu(i,e),this.menu.refresh(),i.show(),this._resizeMenu(),i.position(t.extend({of:this.element},this.options.position)),this.options.autoFocus&&this.menu.next()},_resizeMenu:function(){var t=this.menu.element;t.outerWidth(Math.max(t.width("").outerWidth()+1,this.element.outerWidth()))},_renderMenu:function(e,i){var n=this;t.each(i,function(t,i){n._renderItemData(e,i)})},_renderItemData:function(t,e){return this._renderItem(t,e).data("ui-autocomplete-item",e)},_renderItem:function(e,i){return t("<li>").append(t("<a>").text(i.label)).appendTo(e)},_move:function(t,e){return this.menu.element.is(":visible")?this.menu.isFirstItem()&&/^previous/.test(t)||this.menu.isLastItem()&&/^next/.test(t)?(this._value(this.term),void this.menu.blur()):void this.menu[t](e):void this.search(null,e)},widget:function(){return this.menu.element},_value:function(){return this.valueMethod.apply(this.element,arguments)},_keyEvent:function(t,e){this.isMultiLine&&!this.menu.element.is(":visible")||(this._move(t,e),e.preventDefault())}}),t.extend(t.ui.autocomplete,{escapeRegex:function(t){return t.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g,"\\$&")},filter:function(e,i){var n=new RegExp(t.ui.autocomplete.escapeRegex(i),"i");return t.grep(e,function(t){return n.test(t.label||t.value||t)})}}),t.widget("ui.autocomplete",t.ui.autocomplete,{options:{messages:{noResults:"No search results.",results:function(t){return t+(t>1?" results are":" result is")+" available, use up and down arrow keys to navigate."}}},__response:function(t){var e;this._superApply(arguments),this.options.disabled||this.cancelSearch||(e=t&&t.length?this.options.messages.results(t.length):this.options.messages.noResults,this.liveRegion.text(e))}})}(t),function(t,e){var i,n,r,a,o="ui-button ui-widget ui-state-default ui-corner-all",s="ui-button-icons-only ui-button-icon-only ui-button-text-icons ui-button-text-icon-primary ui-button-text-icon-secondary ui-button-text-only",l=function(){var e=t(this).find(":ui-button");setTimeout(function(){e.button("refresh")},1)},c=function(e){var i=e.name,n=e.form,r=t([]);return i&&(r=n?t(n).find("[name='"+i+"']"):t("[name='"+i+"']",e.ownerDocument).filter(function(){return!this.form})),r};t.widget("ui.button",{version:"1.9.1",defaultElement:"<button>",options:{disabled:null,text:!0,label:null,icons:{primary:null,secondary:null}},_create:function(){this.element.closest("form").unbind("reset"+this.eventNamespace).bind("reset"+this.eventNamespace,l),"boolean"!=typeof this.options.disabled?this.options.disabled=!!this.element.prop("disabled"):this.element.prop("disabled",this.options.disabled),this._determineButtonType(),this.hasTitle=!!this.buttonElement.attr("title");var e=this,s=this.options,u="checkbox"===this.type||"radio"===this.type,h="ui-state-hover"+(u?"":" ui-state-active"),d="ui-state-focus";null===s.label&&(s.label="input"===this.type?this.buttonElement.val():this.buttonElement.html()),this.buttonElement.addClass(o).attr("role","button").bind("mouseenter"+this.eventNamespace,function(){s.disabled||(t(this).addClass("ui-state-hover"),this===i&&t(this).addClass("ui-state-active"))}).bind("mouseleave"+this.eventNamespace,function(){s.disabled||t(this).removeClass(h)}).bind("click"+this.eventNamespace,function(t){s.disabled&&(t.preventDefault(),t.stopImmediatePropagation())}),this.element.bind("focus"+this.eventNamespace,function(){e.buttonElement.addClass(d)}).bind("blur"+this.eventNamespace,function(){e.buttonElement.removeClass(d)}),u&&(this.element.bind("change"+this.eventNamespace,function(){a||e.refresh()}),this.buttonElement.bind("mousedown"+this.eventNamespace,function(t){s.disabled||(a=!1,n=t.pageX,r=t.pageY)}).bind("mouseup"+this.eventNamespace,function(t){s.disabled||n===t.pageX&&r===t.pageY||(a=!0)})),"checkbox"===this.type?this.buttonElement.bind("click"+this.eventNamespace,function(){if(s.disabled||a)return!1;t(this).toggleClass("ui-state-active"),e.buttonElement.attr("aria-pressed",e.element[0].checked)}):"radio"===this.type?this.buttonElement.bind("click"+this.eventNamespace,function(){if(s.disabled||a)return!1;t(this).addClass("ui-state-active"),e.buttonElement.attr("aria-pressed","true");var i=e.element[0];c(i).not(i).map(function(){return t(this).button("widget")[0]}).removeClass("ui-state-active").attr("aria-pressed","false")}):(this.buttonElement.bind("mousedown"+this.eventNamespace,function(){if(s.disabled)return!1;t(this).addClass("ui-state-active"),i=this,e.document.one("mouseup",function(){i=null})}).bind("mouseup"+this.eventNamespace,function(){if(s.disabled)return!1;t(this).removeClass("ui-state-active")}).bind("keydown"+this.eventNamespace,function(e){if(s.disabled)return!1;(e.keyCode===t.ui.keyCode.SPACE||e.keyCode===t.ui.keyCode.ENTER)&&t(this).addClass("ui-state-active")}).bind("keyup"+this.eventNamespace,function(){t(this).removeClass("ui-state-active")}),this.buttonElement.is("a")&&this.buttonElement.keyup(function(e){e.keyCode===t.ui.keyCode.SPACE&&t(this).click()})),this._setOption("disabled",s.disabled),this._resetButton()},_determineButtonType:function(){var t,e,i;this.element.is("[type=checkbox]")?this.type="checkbox":this.element.is("[type=radio]")?this.type="radio":this.element.is("input")?this.type="input":this.type="button","checkbox"===this.type||"radio"===this.type?(t=this.element.parents().last(),e="label[for='"+this.element.attr("id")+"']",this.buttonElement=t.find(e),this.buttonElement.length||(t=t.length?t.siblings():this.element.siblings(),this.buttonElement=t.filter(e),this.buttonElement.length||(this.buttonElement=t.find(e))),this.element.addClass("ui-helper-hidden-accessible"),i=this.element.is(":checked"),i&&this.buttonElement.addClass("ui-state-active"),this.buttonElement.prop("aria-pressed",i)):this.buttonElement=this.element},widget:function(){return this.buttonElement},_destroy:function(){this.element.removeClass("ui-helper-hidden-accessible"),this.buttonElement.removeClass(o+" ui-state-hover ui-state-active  "+s).removeAttr("role").removeAttr("aria-pressed").html(this.buttonElement.find(".ui-button-text").html()),this.hasTitle||this.buttonElement.removeAttr("title")},_setOption:function(t,e){if(this._super(t,e),"disabled"===t)return void(e?this.element.prop("disabled",!0):this.element.prop("disabled",!1));this._resetButton()},refresh:function(){var e=this.element.is(":disabled")||this.element.hasClass("ui-button-disabled");e!==this.options.disabled&&this._setOption("disabled",e),"radio"===this.type?c(this.element[0]).each(function(){t(this).is(":checked")?t(this).button("widget").addClass("ui-state-active").attr("aria-pressed","true"):t(this).button("widget").removeClass("ui-state-active").attr("aria-pressed","false")}):"checkbox"===this.type&&(this.element.is(":checked")?this.buttonElement.addClass("ui-state-active").attr("aria-pressed","true"):this.buttonElement.removeClass("ui-state-active").attr("aria-pressed","false"))},_resetButton:function(){if("input"===this.type)return void(this.options.label&&this.element.val(this.options.label));var e=this.buttonElement.removeClass(s),i=t("<span></span>",this.document[0]).addClass("ui-button-text").html(this.options.label).appendTo(e.empty()).text(),n=this.options.icons,r=n.primary&&n.secondary,a=[];n.primary||n.secondary?(this.options.text&&a.push("ui-button-text-icon"+(r?"s":n.primary?"-primary":"-secondary")),n.primary&&e.prepend("<span class='ui-button-icon-primary ui-icon "+n.primary+"'></span>"),n.secondary&&e.append("<span class='ui-button-icon-secondary ui-icon "+n.secondary+"'></span>"),this.options.text||(a.push(r?"ui-button-icons-only":"ui-button-icon-only"),this.hasTitle||e.attr("title",t.trim(i)))):a.push("ui-button-text-only"),e.addClass(a.join(" "))}}),t.widget("ui.buttonset",{version:"1.9.1",options:{items:"button, input[type=button], input[type=submit], input[type=reset], input[type=checkbox], input[type=radio], a, :data(button)"},_create:function(){this.element.addClass("ui-buttonset")},_init:function(){this.refresh()},_setOption:function(t,e){"disabled"===t&&this.buttons.button("option",t,e),this._super(t,e)},refresh:function(){var e="rtl"===this.element.css("direction");this.buttons=this.element.find(this.options.items).filter(":ui-button").button("refresh").end().not(":ui-button").button().end().map(function(){return t(this).button("widget")[0]}).removeClass("ui-corner-all ui-corner-left ui-corner-right").filter(":first").addClass(e?"ui-corner-right":"ui-corner-left").end().filter(":last").addClass(e?"ui-corner-left":"ui-corner-right").end().end()},_destroy:function(){this.element.removeClass("ui-buttonset"),this.buttons.map(function(){return t(this).button("widget")[0]}).removeClass("ui-corner-left ui-corner-right").end().button("destroy")}})}(t),function(t,e){var i=!1;t.widget("ui.menu",{version:"1.9.1",defaultElement:"<ul>",delay:300,options:{icons:{submenu:"ui-icon-carat-1-e"},menus:"ul",position:{my:"left top",at:"right top"},role:"menu",blur:null,focus:null,select:null},_create:function(){this.activeMenu=this.element,this.element.uniqueId().addClass("ui-menu ui-widget ui-widget-content ui-corner-all").toggleClass("ui-menu-icons",!!this.element.find(".ui-icon").length).attr({role:this.options.role,tabIndex:0}).bind("click"+this.eventNamespace,t.proxy(function(t){this.options.disabled&&t.preventDefault()},this)),this.options.disabled&&this.element.addClass("ui-state-disabled").attr("aria-disabled","true"),this._on({"mousedown .ui-menu-item > a":function(t){t.preventDefault()},"click .ui-state-disabled > a":function(t){t.preventDefault()},"click .ui-menu-item:has(a)":function(e){var n=t(e.target).closest(".ui-menu-item");!i&&n.not(".ui-state-disabled").length&&(i=!0,this.select(e),n.has(".ui-menu").length?this.expand(e):this.element.is(":focus")||(this.element.trigger("focus",[!0]),this.active&&1===this.active.parents(".ui-menu").length&&clearTimeout(this.timer)))},"mouseenter .ui-menu-item":function(e){var i=t(e.currentTarget);i.siblings().children(".ui-state-active").removeClass("ui-state-active"),this.focus(e,i)},mouseleave:"collapseAll","mouseleave .ui-menu":"collapseAll",focus:function(t,e){var i=this.active||this.element.children(".ui-menu-item").eq(0);e||this.focus(t,i)},blur:function(e){this._delay(function(){t.contains(this.element[0],this.document[0].activeElement)||this.collapseAll(e)})},keydown:"_keydown"}),this.refresh(),this._on(this.document,{click:function(e){t(e.target).closest(".ui-menu").length||this.collapseAll(e),i=!1}})},_destroy:function(){this.element.removeAttr("aria-activedescendant").find(".ui-menu").andSelf().removeClass("ui-menu ui-widget ui-widget-content ui-corner-all ui-menu-icons").removeAttr("role").removeAttr("tabIndex").removeAttr("aria-labelledby").removeAttr("aria-expanded").removeAttr("aria-hidden").removeAttr("aria-disabled").removeUniqueId().show(),this.element.find(".ui-menu-item").removeClass("ui-menu-item").removeAttr("role").removeAttr("aria-disabled").children("a").removeUniqueId().removeClass("ui-corner-all ui-state-hover").removeAttr("tabIndex").removeAttr("role").removeAttr("aria-haspopup").children().each(function(){var e=t(this);e.data("ui-menu-submenu-carat")&&e.remove()}),this.element.find(".ui-menu-divider").removeClass("ui-menu-divider ui-widget-content")},_keydown:function(e){function i(t){return t.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g,"\\$&")}var n,r,a,o,s,l=!0;switch(e.keyCode){case t.ui.keyCode.PAGE_UP:this.previousPage(e);break;case t.ui.keyCode.PAGE_DOWN:this.nextPage(e);break;case t.ui.keyCode.HOME:this._move("first","first",e);break;case t.ui.keyCode.END:this._move("last","last",e);break;case t.ui.keyCode.UP:this.previous(e);break;case t.ui.keyCode.DOWN:this.next(e);break;case t.ui.keyCode.LEFT:this.collapse(e);break;case t.ui.keyCode.RIGHT:this.active&&!this.active.is(".ui-state-disabled")&&this.expand(e);break;case t.ui.keyCode.ENTER:case t.ui.keyCode.SPACE:this._activate(e);break;case t.ui.keyCode.ESCAPE:this.collapse(e);break;default:l=!1,r=this.previousFilter||"",a=String.fromCharCode(e.keyCode),o=!1,clearTimeout(this.filterTimer),a===r?o=!0:a=r+a,s=new RegExp("^"+i(a),"i"),n=this.activeMenu.children(".ui-menu-item").filter(function(){return s.test(t(this).children("a").text())}),n=o&&-1!==n.index(this.active.next())?this.active.nextAll(".ui-menu-item"):n,n.length||(a=String.fromCharCode(e.keyCode),s=new RegExp("^"+i(a),"i"),n=this.activeMenu.children(".ui-menu-item").filter(function(){return s.test(t(this).children("a").text())})),n.length?(this.focus(e,n),n.length>1?(this.previousFilter=a,this.filterTimer=this._delay(function(){delete this.previousFilter},1e3)):delete this.previousFilter):delete this.previousFilter}l&&e.preventDefault()},_activate:function(t){this.active.is(".ui-state-disabled")||(this.active.children("a[aria-haspopup='true']").length?this.expand(t):this.select(t))},refresh:function(){var e,i=this.options.icons.submenu,n=this.element.find(this.options.menus+":not(.ui-menu)").addClass("ui-menu ui-widget ui-widget-content ui-corner-all").hide().attr({role:this.options.role,"aria-hidden":"true","aria-expanded":"false"});e=n.add(this.element),e.children(":not(.ui-menu-item):has(a)").addClass("ui-menu-item").attr("role","presentation").children("a").uniqueId().addClass("ui-corner-all").attr({tabIndex:-1,role:this._itemRole()}),e.children(":not(.ui-menu-item)").each(function(){var e=t(this);/[^\-—–\s]/.test(e.text())||e.addClass("ui-widget-content ui-menu-divider")}),e.children(".ui-state-disabled").attr("aria-disabled","true"),n.each(function(){var e=t(this),n=e.prev("a"),r=t("<span>").addClass("ui-menu-icon ui-icon "+i).data("ui-menu-submenu-carat",!0);n.attr("aria-haspopup","true").prepend(r),e.attr("aria-labelledby",n.attr("id"))}),this.active&&!t.contains(this.element[0],this.active[0])&&this.blur()},_itemRole:function(){return{menu:"menuitem",listbox:"option"}[this.options.role]},focus:function(t,e){var i,n;this.blur(t,t&&"focus"===t.type),this._scrollIntoView(e),this.active=e.first(),n=this.active.children("a").addClass("ui-state-focus"),this.options.role&&this.element.attr("aria-activedescendant",n.attr("id")),this.active.parent().closest(".ui-menu-item").children("a:first").addClass("ui-state-active"),t&&"keydown"===t.type?this._close():this.timer=this._delay(function(){this._close()},this.delay),i=e.children(".ui-menu"),i.length&&/^mouse/.test(t.type)&&this._startOpening(i),this.activeMenu=e.parent(),this._trigger("focus",t,{item:e})},_scrollIntoView:function(e){var 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r(o,this)}),u}},t.Widget=function(){},t.Widget._childConstructors=[],t.Widget.prototype={widgetName:"widget",widgetEventPrefix:"",defaultElement:"<div>",options:{disabled:!1,create:null},_createWidget:function(e,n){n=t(n||this.defaultElement||this)[0],this.element=t(n),this.uuid=i++,this.eventNamespace="."+this.widgetName+this.uuid,this.options=t.widget.extend({},this.options,this._getCreateOptions(),e),this.bindings=t(),this.hoverable=t(),this.focusable=t(),n!==this&&(t.data(n,this.widgetName,this),t.data(n,this.widgetFullName,this),this._on(this.element,{remove:function(t){t.target===n&&this.destroy()}}),this.document=t(n.style?n.ownerDocument:n.document||n),this.window=t(this.document[0].defaultView||this.document[0].parentWindow)),this._create(),this._trigger("create",null,this._getCreateEventData()),this._init()},_getCreateOptions:t.noop,_getCreateEventData:t.noop,_create:t.noop,_init:t.noop,destroy:function(){this._destroy(),this.element.unbind(this.eventNamespace).removeData(this.widgetName).removeData(this.widgetFullName).removeData(t.camelCase(this.widgetFullName)),this.widget().unbind(this.eventNamespace).removeAttr("aria-disabled").removeClass(this.widgetFullName+"-disabled 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setTimeout(i,e||0)},_hoverable:function(e){this.hoverable=this.hoverable.add(e),this._on(e,{mouseenter:function(e){t(e.currentTarget).addClass("ui-state-hover")},mouseleave:function(e){t(e.currentTarget).removeClass("ui-state-hover")}})},_focusable:function(e){this.focusable=this.focusable.add(e),this._on(e,{focusin:function(e){t(e.currentTarget).addClass("ui-state-focus")},focusout:function(e){t(e.currentTarget).removeClass("ui-state-focus")}})},_trigger:function(e,i,n){var r,a,o=this.options[e];if(n=n||{},i=t.Event(i),i.type=(e===this.widgetEventPrefix?e:this.widgetEventPrefix+e).toLowerCase(),i.target=this.element[0],a=i.originalEvent,a)for(r in a)r in i||(i[r]=a[r]);return this.element.trigger(i,n),!(t.isFunction(o)&&!1===o.apply(this.element[0],[i].concat(n))||i.isDefaultPrevented())}},t.each({show:"fadeIn",hide:"fadeOut"},function(e,i){t.Widget.prototype["_"+e]=function(n,r,a){"string"==typeof r&&(r={effect:r});var o,s=r?!0===r||"number"==typeof 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Math.max(Math.abs(this._mouseDownEvent.pageX-t.pageX),Math.abs(this._mouseDownEvent.pageY-t.pageY))>=this.options.distance},_mouseDelayMet:function(t){return this.mouseDelayMet},_mouseStart:function(t){},_mouseDrag:function(t){},_mouseStop:function(t){},_mouseCapture:function(t){return!0}})}(t),function(e,i){function n(t,e,i){return[parseInt(t[0],10)*(f.test(t[0])?e/100:1),parseInt(t[1],10)*(f.test(t[1])?i/100:1)]}function r(t,i){return parseInt(e.css(t,i),10)||0}e.ui=e.ui||{};var a,o=Math.max,s=Math.abs,l=Math.round,u=/left|center|right/,c=/top|center|bottom/,h=/[\+\-]\d+%?/,d=/^\w+/,f=/%$/,p=e.fn.position;e.position={scrollbarWidth:function(){if(a!==i)return a;var t,n,r=e("<div style='display:block;width:50px;height:50px;overflow:hidden;'><div style='height:100px;width:auto;'></div></div>"),o=r.children()[0];return e("body").append(r),t=o.offsetWidth,r.css("overflow","scroll"),n=o.offsetWidth,t===n&&(n=r[0].clientWidth),r.remove(),a=t-n},getScrollInfo:function(t){var 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i=m.left-T.left,n=i+a-d,r=m.top-T.top,l=r+f-p,u={target:{element:g,left:m.left,top:m.top,width:a,height:f},element:{element:h,left:T.left,top:T.top,width:d,height:p},horizontal:n<0?"left":i>0?"right":"center",vertical:l<0?"top":r>0?"bottom":"middle"};a<d&&s(i+n)<a&&(u.horizontal="center"),f<p&&s(r+l)<f&&(u.vertical="middle"),o(s(i),s(n))>o(s(r),s(l))?u.important="horizontal":u.important="vertical",t.using.call(this,e,u)}),h.offset(e.extend(T,{using:c}))})},e.ui.position={fit:{left:function(t,e){var i,n=e.within,r=n.isWindow?n.scrollLeft:n.offset.left,a=n.width,s=t.left-e.collisionPosition.marginLeft,l=r-s,u=s+e.collisionWidth-a-r;e.collisionWidth>a?l>0&&u<=0?(i=t.left+l+e.collisionWidth-a-r,t.left+=l-i):t.left=u>0&&l<=0?r:l>u?r+a-e.collisionWidth:r:l>0?t.left+=l:u>0?t.left-=u:t.left=o(t.left-s,t.left)},top:function(t,e){var i,n=e.within,r=n.isWindow?n.scrollTop:n.offset.top,a=e.within.height,s=t.top-e.collisionPosition.marginTop,l=r-s,u=s+e.collisionHeight-a-r;e.collisionHeight>a?l>0&&u<=0?(i=t.top+l+e.collisionHeight-a-r,t.top+=l-i):t.top=u>0&&l<=0?r:l>u?r+a-e.collisionHeight:r:l>0?t.top+=l:u>0?t.top-=u:t.top=o(t.top-s,t.top)}},flip:{left:function(t,e){var i,n,r=e.within,a=r.offset.left+r.scrollLeft,o=r.width,l=r.isWindow?r.scrollLeft:r.offset.left,u=t.left-e.collisionPosition.marginLeft,c=u-l,h=u+e.collisionWidth-o-l,d="left"===e.my[0]?-e.elemWidth:"right"===e.my[0]?e.elemWidth:0,f="left"===e.at[0]?e.targetWidth:"right"===e.at[0]?-e.targetWidth:0,p=-2*e.offset[0];c<0?((i=t.left+d+f+p+e.collisionWidth-o-a)<0||i<s(c))&&(t.left+=d+f+p):h>0&&((n=t.left-e.collisionPosition.marginLeft+d+f+p-l)>0||s(n)<h)&&(t.left+=d+f+p)},top:function(t,e){var i,n,r=e.within,a=r.offset.top+r.scrollTop,o=r.height,l=r.isWindow?r.scrollTop:r.offset.top,u=t.top-e.collisionPosition.marginTop,c=u-l,h=u+e.collisionHeight-o-l,d="top"===e.my[1],f=d?-e.elemHeight:"bottom"===e.my[1]?e.elemHeight:0,p="top"===e.at[1]?e.targetHeight:"bottom"===e.at[1]?-e.targetHeight:0,m=-2*e.offset[1];c<0?(n=t.top+f+p+m+e.collisionHeight-o-a,t.top+f+p+m>c&&(n<0||n<s(c))&&(t.top+=f+p+m)):h>0&&(i=t.top-e.collisionPosition.marginTop+f+p+m-l,t.top+f+p+m>h&&(i>0||s(i)<h)&&(t.top+=f+p+m))}},flipfit:{left:function(){e.ui.position.flip.left.apply(this,arguments),e.ui.position.fit.left.apply(this,arguments)},top:function(){e.ui.position.flip.top.apply(this,arguments),e.ui.position.fit.top.apply(this,arguments)}}},function(){var t,i,n,r,a,o=document.getElementsByTagName("body")[0],s=document.createElement("div");t=document.createElement(o?"div":"body"),n={visibility:"hidden",width:0,height:0,border:0,margin:0,background:"none"},o&&e.extend(n,{position:"absolute",left:"-1000px",top:"-1000px"});for(a in n)t.style[a]=n[a];t.appendChild(s),i=o||document.documentElement,i.insertBefore(t,i.firstChild),s.style.cssText="position: absolute; left: 10.7432222px;",r=e(s).offset().left,e.support.offsetFractions=r>10&&r<11,t.innerHTML="",i.removeChild(t)}(),!1!==e.uiBackCompat&&function(t){var e=t.fn.position;t.fn.position=function(n){if(!n||!n.offset)return e.call(this,n);var r=n.offset.split(" "),a=n.at.split(" ");return 1===r.length&&(r[1]=r[0]),/^\d/.test(r[0])&&(r[0]="+"+r[0]),/^\d/.test(r[1])&&(r[1]="+"+r[1]),1===a.length&&(/left|center|right/.test(a[0])?a[1]="center":(a[1]=a[0],a[0]="center")),e.call(this,t.extend(n,{at:a[0]+r[0]+" "+a[1]+r[1],offset:i}))}}(t)}(t),function(t,e){var i=0;t.widget("ui.autocomplete",{version:"1.9.1",defaultElement:"<input>",options:{appendTo:"body",autoFocus:!1,delay:300,minLength:1,position:{my:"left top",at:"left bottom",collision:"none"},source:null,change:null,close:null,focus:null,open:null,response:null,search:null,select:null},pending:0,_create:function(){var e,i,n;this.isMultiLine=this._isMultiLine(),this.valueMethod=this.element[this.element.is("input,textarea")?"val":"text"],this.isNewMenu=!0,this.element.addClass("ui-autocomplete-input").attr("autocomplete","off"),this._on(this.element,{keydown:function(r){if(this.element.prop("readOnly"))return e=!0,n=!0,i=!0,void 0;e=!1,n=!1,i=!1;var a=t.ui.keyCode;switch(r.keyCode){case a.PAGE_UP:e=!0,this._move("previousPage",r);break;case a.PAGE_DOWN:e=!0,this._move("nextPage",r);break;case a.UP:e=!0,this._keyEvent("previous",r);break;case a.DOWN:e=!0,this._keyEvent("next",r);break;case a.ENTER:case a.NUMPAD_ENTER:this.menu.active&&(e=!0,r.preventDefault(),this.menu.select(r));break;case a.TAB:this.menu.active&&this.menu.select(r);break;case a.ESCAPE:this.menu.element.is(":visible")&&(this._value(this.term),this.close(r),r.preventDefault());break;default:i=!0,this._searchTimeout(r)}},keypress:function(n){if(e)return e=!1,void n.preventDefault();if(!i){var r=t.ui.keyCode;switch(n.keyCode){case r.PAGE_UP:this._move("previousPage",n);break;case r.PAGE_DOWN:this._move("nextPage",n);break;case r.UP:this._keyEvent("previous",n);break;case r.DOWN:this._keyEvent("next",n)}}},input:function(t){if(n)return n=!1,void t.preventDefault();this._searchTimeout(t)},focus:function(){this.selectedItem=null,this.previous=this._value()},blur:function(t){if(this.cancelBlur)return void delete this.cancelBlur;clearTimeout(this.searching),this.close(t),this._change(t)}}),this._initSource(),this.menu=t("<ul>").addClass("ui-autocomplete").appendTo(this.document.find(this.options.appendTo||"body")[0]).menu({input:t(),role:null}).zIndex(this.element.zIndex()+1).hide().data("menu"),this._on(this.menu.element,{mousedown:function(e){e.preventDefault(),this.cancelBlur=!0,this._delay(function(){delete this.cancelBlur});var i=this.menu.element[0];t(e.target).closest(".ui-menu-item").length||this._delay(function(){var e=this;this.document.one("mousedown",function(n){n.target!==e.element[0]&&n.target!==i&&!t.contains(i,n.target)&&e.close()})})},menufocus:function(e,i){if(this.isNewMenu&&(this.isNewMenu=!1,e.originalEvent&&/^mouse/.test(e.originalEvent.type)))return this.menu.blur(),void this.document.one("mousemove",function(){t(e.target).trigger(e.originalEvent)});var n=i.item.data("ui-autocomplete-item")||i.item.data("item.autocomplete");!1!==this._trigger("focus",e,{item:n})?e.originalEvent&&/^key/.test(e.originalEvent.type)&&this._value(n.value):this.liveRegion.text(n.value)},menuselect:function(t,e){var i=e.item.data("ui-autocomplete-item")||e.item.data("item.autocomplete"),n=this.previous;this.element[0]!==this.document[0].activeElement&&(this.element.focus(),this.previous=n,this._delay(function(){this.previous=n,this.selectedItem=i})),!1!==this._trigger("select",t,{item:i})&&this._value(i.value),this.term=this._value(),this.close(t),this.selectedItem=i}}),this.liveRegion=t("<span>",{role:"status","aria-live":"polite"}).addClass("ui-helper-hidden-accessible").insertAfter(this.element),t.fn.bgiframe&&this.menu.element.bgiframe(),this._on(this.window,{beforeunload:function(){this.element.removeAttr("autocomplete")}})},_destroy:function(){clearTimeout(this.searching),this.element.removeClass("ui-autocomplete-input").removeAttr("autocomplete"),this.menu.element.remove(),this.liveRegion.remove()},_setOption:function(t,e){this._super(t,e),"source"===t&&this._initSource(),"appendTo"===t&&this.menu.element.appendTo(this.document.find(e||"body")[0]),"disabled"===t&&e&&this.xhr&&this.xhr.abort()},_isMultiLine:function(){return!!this.element.is("textarea")||!this.element.is("input")&&this.element.prop("isContentEditable")},_initSource:function(){var e,i,n=this;t.isArray(this.options.source)?(e=this.options.source,this.source=function(i,n){n(t.ui.autocomplete.filter(e,i.term))}):"string"==typeof this.options.source?(i=this.options.source,this.source=function(e,r){n.xhr&&n.xhr.abort(),n.xhr=t.ajax({url:i,data:e,dataType:"json",success:function(t){r(t)},error:function(){r([])}})}):this.source=this.options.source},_searchTimeout:function(t){clearTimeout(this.searching),this.searching=this._delay(function(){this.term!==this._value()&&(this.selectedItem=null,this.search(null,t))},this.options.delay)},search:function(t,e){return t=null!=t?t:this._value(),this.term=this._value(),t.length<this.options.minLength?this.close(e):!1!==this._trigger("search",e)?this._search(t):void 0},_search:function(t){this.pending++,this.element.addClass("ui-autocomplete-loading"),this.cancelSearch=!1,this.source({term:t},this._response())},_response:function(){var t=this,e=++i;return function(n){e===i&&t.__response(n),--t.pending||t.element.removeClass("ui-autocomplete-loading")}},__response:function(t){t&&(t=this._normalize(t)),this._trigger("response",null,{content:t}),!this.options.disabled&&t&&t.length&&!this.cancelSearch?(this._suggest(t),this._trigger("open")):this._close()},close:function(t){this.cancelSearch=!0,this._close(t)},_close:function(t){this.menu.element.is(":visible")&&(this.menu.element.hide(),this.menu.blur(),this.isNewMenu=!0,this._trigger("close",t))},_change:function(t){this.previous!==this._value()&&this._trigger("change",t,{item:this.selectedItem})},_normalize:function(e){return e.length&&e[0].label&&e[0].value?e:t.map(e,function(e){return"string"==typeof e?{label:e,value:e}:t.extend({label:e.label||e.value,value:e.value||e.label},e)})},_suggest:function(e){var i=this.menu.element.empty().zIndex(this.element.zIndex()+1);this._renderMenu(i,e),this.menu.refresh(),i.show(),this._resizeMenu(),i.position(t.extend({of:this.element},this.options.position)),this.options.autoFocus&&this.menu.next()},_resizeMenu:function(){var t=this.menu.element;t.outerWidth(Math.max(t.width("").outerWidth()+1,this.element.outerWidth()))},_renderMenu:function(e,i){var n=this;t.each(i,function(t,i){n._renderItemData(e,i)})},_renderItemData:function(t,e){return this._renderItem(t,e).data("ui-autocomplete-item",e)},_renderItem:function(e,i){return t("<li>").append(t("<a>").text(i.label)).appendTo(e)},_move:function(t,e){return this.menu.element.is(":visible")?this.menu.isFirstItem()&&/^previous/.test(t)||this.menu.isLastItem()&&/^next/.test(t)?(this._value(this.term),void this.menu.blur()):void this.menu[t](e):void this.search(null,e)},widget:function(){return this.menu.element},_value:function(){return this.valueMethod.apply(this.element,arguments)},_keyEvent:function(t,e){this.isMultiLine&&!this.menu.element.is(":visible")||(this._move(t,e),e.preventDefault())}}),t.extend(t.ui.autocomplete,{escapeRegex:function(t){return t.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g,"\\$&")},filter:function(e,i){var n=new RegExp(t.ui.autocomplete.escapeRegex(i),"i");return t.grep(e,function(t){return n.test(t.label||t.value||t)})}}),t.widget("ui.autocomplete",t.ui.autocomplete,{options:{messages:{noResults:"No search results.",results:function(t){return t+(t>1?" results are":" result is")+" available, use up and down arrow keys to navigate."}}},__response:function(t){var e;this._superApply(arguments),this.options.disabled||this.cancelSearch||(e=t&&t.length?this.options.messages.results(t.length):this.options.messages.noResults,this.liveRegion.text(e))}})}(t),function(t,e){var i,n,r,a,o="ui-button ui-widget ui-state-default ui-corner-all",s="ui-button-icons-only ui-button-icon-only ui-button-text-icons ui-button-text-icon-primary ui-button-text-icon-secondary ui-button-text-only",l=function(){var e=t(this).find(":ui-button");setTimeout(function(){e.button("refresh")},1)},u=function(e){var i=e.name,n=e.form,r=t([]);return i&&(r=n?t(n).find("[name='"+i+"']"):t("[name='"+i+"']",e.ownerDocument).filter(function(){return!this.form})),r};t.widget("ui.button",{version:"1.9.1",defaultElement:"<button>",options:{disabled:null,text:!0,label:null,icons:{primary:null,secondary:null}},_create:function(){this.element.closest("form").unbind("reset"+this.eventNamespace).bind("reset"+this.eventNamespace,l),"boolean"!=typeof this.options.disabled?this.options.disabled=!!this.element.prop("disabled"):this.element.prop("disabled",this.options.disabled),this._determineButtonType(),this.hasTitle=!!this.buttonElement.attr("title");var e=this,s=this.options,c="checkbox"===this.type||"radio"===this.type,h="ui-state-hover"+(c?"":" ui-state-active"),d="ui-state-focus";null===s.label&&(s.label="input"===this.type?this.buttonElement.val():this.buttonElement.html()),this.buttonElement.addClass(o).attr("role","button").bind("mouseenter"+this.eventNamespace,function(){s.disabled||(t(this).addClass("ui-state-hover"),this===i&&t(this).addClass("ui-state-active"))}).bind("mouseleave"+this.eventNamespace,function(){s.disabled||t(this).removeClass(h)}).bind("click"+this.eventNamespace,function(t){s.disabled&&(t.preventDefault(),t.stopImmediatePropagation())}),this.element.bind("focus"+this.eventNamespace,function(){e.buttonElement.addClass(d)}).bind("blur"+this.eventNamespace,function(){e.buttonElement.removeClass(d)}),c&&(this.element.bind("change"+this.eventNamespace,function(){a||e.refresh()}),this.buttonElement.bind("mousedown"+this.eventNamespace,function(t){s.disabled||(a=!1,n=t.pageX,r=t.pageY)}).bind("mouseup"+this.eventNamespace,function(t){s.disabled||n===t.pageX&&r===t.pageY||(a=!0)})),"checkbox"===this.type?this.buttonElement.bind("click"+this.eventNamespace,function(){if(s.disabled||a)return!1;t(this).toggleClass("ui-state-active"),e.buttonElement.attr("aria-pressed",e.element[0].checked)}):"radio"===this.type?this.buttonElement.bind("click"+this.eventNamespace,function(){if(s.disabled||a)return!1;t(this).addClass("ui-state-active"),e.buttonElement.attr("aria-pressed","true");var i=e.element[0];u(i).not(i).map(function(){return t(this).button("widget")[0]}).removeClass("ui-state-active").attr("aria-pressed","false")}):(this.buttonElement.bind("mousedown"+this.eventNamespace,function(){if(s.disabled)return!1;t(this).addClass("ui-state-active"),i=this,e.document.one("mouseup",function(){i=null})}).bind("mouseup"+this.eventNamespace,function(){if(s.disabled)return!1;t(this).removeClass("ui-state-active")}).bind("keydown"+this.eventNamespace,function(e){if(s.disabled)return!1;(e.keyCode===t.ui.keyCode.SPACE||e.keyCode===t.ui.keyCode.ENTER)&&t(this).addClass("ui-state-active")}).bind("keyup"+this.eventNamespace,function(){t(this).removeClass("ui-state-active")}),this.buttonElement.is("a")&&this.buttonElement.keyup(function(e){e.keyCode===t.ui.keyCode.SPACE&&t(this).click()})),this._setOption("disabled",s.disabled),this._resetButton()},_determineButtonType:function(){var t,e,i;this.element.is("[type=checkbox]")?this.type="checkbox":this.element.is("[type=radio]")?this.type="radio":this.element.is("input")?this.type="input":this.type="button","checkbox"===this.type||"radio"===this.type?(t=this.element.parents().last(),e="label[for='"+this.element.attr("id")+"']",this.buttonElement=t.find(e),this.buttonElement.length||(t=t.length?t.siblings():this.element.siblings(),this.buttonElement=t.filter(e),this.buttonElement.length||(this.buttonElement=t.find(e))),this.element.addClass("ui-helper-hidden-accessible"),i=this.element.is(":checked"),i&&this.buttonElement.addClass("ui-state-active"),this.buttonElement.prop("aria-pressed",i)):this.buttonElement=this.element},widget:function(){return this.buttonElement},_destroy:function(){this.element.removeClass("ui-helper-hidden-accessible"),this.buttonElement.removeClass(o+" ui-state-hover ui-state-active  "+s).removeAttr("role").removeAttr("aria-pressed").html(this.buttonElement.find(".ui-button-text").html()),this.hasTitle||this.buttonElement.removeAttr("title")},_setOption:function(t,e){if(this._super(t,e),"disabled"===t)return void(e?this.element.prop("disabled",!0):this.element.prop("disabled",!1));this._resetButton()},refresh:function(){var e=this.element.is(":disabled")||this.element.hasClass("ui-button-disabled");e!==this.options.disabled&&this._setOption("disabled",e),"radio"===this.type?u(this.element[0]).each(function(){t(this).is(":checked")?t(this).button("widget").addClass("ui-state-active").attr("aria-pressed","true"):t(this).button("widget").removeClass("ui-state-active").attr("aria-pressed","false")}):"checkbox"===this.type&&(this.element.is(":checked")?this.buttonElement.addClass("ui-state-active").attr("aria-pressed","true"):this.buttonElement.removeClass("ui-state-active").attr("aria-pressed","false"))},_resetButton:function(){if("input"===this.type)return void(this.options.label&&this.element.val(this.options.label));var e=this.buttonElement.removeClass(s),i=t("<span></span>",this.document[0]).addClass("ui-button-text").html(this.options.label).appendTo(e.empty()).text(),n=this.options.icons,r=n.primary&&n.secondary,a=[];n.primary||n.secondary?(this.options.text&&a.push("ui-button-text-icon"+(r?"s":n.primary?"-primary":"-secondary")),n.primary&&e.prepend("<span class='ui-button-icon-primary ui-icon "+n.primary+"'></span>"),n.secondary&&e.append("<span class='ui-button-icon-secondary ui-icon "+n.secondary+"'></span>"),this.options.text||(a.push(r?"ui-button-icons-only":"ui-button-icon-only"),this.hasTitle||e.attr("title",t.trim(i)))):a.push("ui-button-text-only"),e.addClass(a.join(" "))}}),t.widget("ui.buttonset",{version:"1.9.1",options:{items:"button, input[type=button], input[type=submit], input[type=reset], input[type=checkbox], input[type=radio], a, :data(button)"},_create:function(){this.element.addClass("ui-buttonset")},_init:function(){this.refresh()},_setOption:function(t,e){"disabled"===t&&this.buttons.button("option",t,e),this._super(t,e)},refresh:function(){var e="rtl"===this.element.css("direction");this.buttons=this.element.find(this.options.items).filter(":ui-button").button("refresh").end().not(":ui-button").button().end().map(function(){return t(this).button("widget")[0]}).removeClass("ui-corner-all ui-corner-left ui-corner-right").filter(":first").addClass(e?"ui-corner-right":"ui-corner-left").end().filter(":last").addClass(e?"ui-corner-left":"ui-corner-right").end().end()},_destroy:function(){this.element.removeClass("ui-buttonset"),this.buttons.map(function(){return t(this).button("widget")[0]}).removeClass("ui-corner-left ui-corner-right").end().button("destroy")}})}(t),function(t,e){var i=!1;t.widget("ui.menu",{version:"1.9.1",defaultElement:"<ul>",delay:300,options:{icons:{submenu:"ui-icon-carat-1-e"},menus:"ul",position:{my:"left top",at:"right top"},role:"menu",blur:null,focus:null,select:null},_create:function(){this.activeMenu=this.element,this.element.uniqueId().addClass("ui-menu ui-widget ui-widget-content ui-corner-all").toggleClass("ui-menu-icons",!!this.element.find(".ui-icon").length).attr({role:this.options.role,tabIndex:0}).bind("click"+this.eventNamespace,t.proxy(function(t){this.options.disabled&&t.preventDefault()},this)),this.options.disabled&&this.element.addClass("ui-state-disabled").attr("aria-disabled","true"),this._on({"mousedown .ui-menu-item > a":function(t){t.preventDefault()},"click .ui-state-disabled > a":function(t){t.preventDefault()},"click .ui-menu-item:has(a)":function(e){var n=t(e.target).closest(".ui-menu-item");!i&&n.not(".ui-state-disabled").length&&(i=!0,this.select(e),n.has(".ui-menu").length?this.expand(e):this.element.is(":focus")||(this.element.trigger("focus",[!0]),this.active&&1===this.active.parents(".ui-menu").length&&clearTimeout(this.timer)))},"mouseenter .ui-menu-item":function(e){var i=t(e.currentTarget);i.siblings().children(".ui-state-active").removeClass("ui-state-active"),this.focus(e,i)},mouseleave:"collapseAll","mouseleave .ui-menu":"collapseAll",focus:function(t,e){var i=this.active||this.element.children(".ui-menu-item").eq(0);e||this.focus(t,i)},blur:function(e){this._delay(function(){t.contains(this.element[0],this.document[0].activeElement)||this.collapseAll(e)})},keydown:"_keydown"}),this.refresh(),this._on(this.document,{click:function(e){t(e.target).closest(".ui-menu").length||this.collapseAll(e),i=!1}})},_destroy:function(){this.element.removeAttr("aria-activedescendant").find(".ui-menu").andSelf().removeClass("ui-menu ui-widget ui-widget-content ui-corner-all ui-menu-icons").removeAttr("role").removeAttr("tabIndex").removeAttr("aria-labelledby").removeAttr("aria-expanded").removeAttr("aria-hidden").removeAttr("aria-disabled").removeUniqueId().show(),this.element.find(".ui-menu-item").removeClass("ui-menu-item").removeAttr("role").removeAttr("aria-disabled").children("a").removeUniqueId().removeClass("ui-corner-all ui-state-hover").removeAttr("tabIndex").removeAttr("role").removeAttr("aria-haspopup").children().each(function(){var e=t(this);e.data("ui-menu-submenu-carat")&&e.remove()}),this.element.find(".ui-menu-divider").removeClass("ui-menu-divider ui-widget-content")},_keydown:function(e){function i(t){return t.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g,"\\$&")}var n,r,a,o,s,l=!0;switch(e.keyCode){case t.ui.keyCode.PAGE_UP:this.previousPage(e);break;case t.ui.keyCode.PAGE_DOWN:this.nextPage(e);break;case t.ui.keyCode.HOME:this._move("first","first",e);break;case t.ui.keyCode.END:this._move("last","last",e);break;case t.ui.keyCode.UP:this.previous(e);break;case t.ui.keyCode.DOWN:this.next(e);break;case t.ui.keyCode.LEFT:this.collapse(e);break;case t.ui.keyCode.RIGHT:this.active&&!this.active.is(".ui-state-disabled")&&this.expand(e);break;case t.ui.keyCode.ENTER:case t.ui.keyCode.SPACE:this._activate(e);break;case t.ui.keyCode.ESCAPE:this.collapse(e);break;default:l=!1,r=this.previousFilter||"",a=String.fromCharCode(e.keyCode),o=!1,clearTimeout(this.filterTimer),a===r?o=!0:a=r+a,s=new RegExp("^"+i(a),"i"),n=this.activeMenu.children(".ui-menu-item").filter(function(){return s.test(t(this).children("a").text())}),n=o&&-1!==n.index(this.active.next())?this.active.nextAll(".ui-menu-item"):n,n.length||(a=String.fromCharCode(e.keyCode),s=new RegExp("^"+i(a),"i"),n=this.activeMenu.children(".ui-menu-item").filter(function(){return s.test(t(this).children("a").text())})),n.length?(this.focus(e,n),n.length>1?(this.previousFilter=a,this.filterTimer=this._delay(function(){delete this.previousFilter},1e3)):delete this.previousFilter):delete this.previousFilter}l&&e.preventDefault()},_activate:function(t){this.active.is(".ui-state-disabled")||(this.active.children("a[aria-haspopup='true']").length?this.expand(t):this.select(t))},refresh:function(){var e,i=this.options.icons.submenu,n=this.element.find(this.options.menus+":not(.ui-menu)").addClass("ui-menu ui-widget ui-widget-content ui-corner-all").hide().attr({role:this.options.role,"aria-hidden":"true","aria-expanded":"false"});e=n.add(this.element),e.children(":not(.ui-menu-item):has(a)").addClass("ui-menu-item").attr("role","presentation").children("a").uniqueId().addClass("ui-corner-all").attr({tabIndex:-1,role:this._itemRole()}),e.children(":not(.ui-menu-item)").each(function(){var e=t(this);/[^\-—–\s]/.test(e.text())||e.addClass("ui-widget-content ui-menu-divider")}),e.children(".ui-state-disabled").attr("aria-disabled","true"),n.each(function(){var e=t(this),n=e.prev("a"),r=t("<span>").addClass("ui-menu-icon ui-icon "+i).data("ui-menu-submenu-carat",!0);n.attr("aria-haspopup","true").prepend(r),e.attr("aria-labelledby",n.attr("id"))}),this.active&&!t.contains(this.element[0],this.active[0])&&this.blur()},_itemRole:function(){return{menu:"menuitem",listbox:"option"}[this.options.role]},focus:function(t,e){var i,n;this.blur(t,t&&"focus"===t.type),this._scrollIntoView(e),this.active=e.first(),n=this.active.children("a").addClass("ui-state-focus"),this.options.role&&this.element.attr("aria-activedescendant",n.attr("id")),this.active.parent().closest(".ui-menu-item").children("a:first").addClass("ui-state-active"),t&&"keydown"===t.type?this._close():this.timer=this._delay(function(){this._close()},this.delay),i=e.children(".ui-menu"),i.length&&/^mouse/.test(t.type)&&this._startOpening(i),this.activeMenu=e.parent(),this._trigger("focus",t,{item:e})},_scrollIntoView:function(e){var i,n,r,a,o,s;this._hasScroll()&&(i=parseFloat(t.css(this.activeMenu[0],"borderTopWidth"))||0,n=parseFloat(t.css(this.activeMenu[0],"paddingTop"))||0,r=e.offset().top-this.activeMenu.offset().top-i-n,a=this.activeMenu.scrollTop(),o=this.activeMenu.height(),s=e.height(),r<0?this.activeMenu.scrollTop(a+r):r+s>o&&this.activeMenu.scrollTop(a+r-o+s))},blur:function(t,e){e||clearTimeout(this.timer),this.active&&(this.active.children("a").removeClass("ui-state-focus"),this.active=null,this._trigger("blur",t,{item:this.active}))},_startOpening:function(t){clearTimeout(this.timer),"true"===t.attr("aria-hidden")&&(this.timer=this._delay(function(){this._close(),this._open(t)},this.delay))},_open:function(e){var i=t.extend({of:this.active},this.options.position);clearTimeout(this.timer),this.element.find(".ui-menu").not(e.parents(".ui-menu")).hide().attr("aria-hidden","true"),e.show().removeAttr("aria-hidden").attr("aria-expanded","true").position(i)},collapseAll:function(e,i){clearTimeout(this.timer),this.timer=this._delay(function(){var n=i?this.element:t(e&&e.target).closest(this.element.find(".ui-menu"));n.length||(n=this.element),this._close(n),this.blur(e),this.activeMenu=n},this.delay)},_close:function(t){t||(t=this.active?this.active.parent():this.element),t.find(".ui-menu").hide().attr("aria-hidden","true").attr("aria-expanded","false").end().find("a.ui-state-active").removeClass("ui-state-active")},collapse:function(t){var e=this.active&&this.active.parent().closest(".ui-menu-item",this.element);e&&e.length&&(this._close(),this.focus(t,e))},expand:function(t){var e=this.active&&this.active.children(".ui-menu ").children(".ui-menu-item").first();e&&e.length&&(this._open(e.parent()),this._delay(function(){this.focus(t,e)}))},next:function(t){this._move("next","first",t)},previous:function(t){this._move("prev","last",t)},isFirstItem:function(){return this.active&&!this.active.prevAll(".ui-menu-item").length},isLastItem:function(){return this.active&&!this.active.nextAll(".ui-menu-item").length},_move:function(t,e,i){var n;this.active&&(n="first"===t||"last"===t?this.active["first"===t?"prevAll":"nextAll"](".ui-menu-item").eq(-1):this.active[t+"All"](".ui-menu-item").eq(0)),n&&n.length&&this.active||(n=this.activeMenu.children(".ui-menu-item")[e]()),this.focus(i,n)},nextPage:function(e){var i,n,r;if(!this.active)return void this.next(e);this.isLastItem()||(this._hasScroll()?(n=this.active.offset().top,r=this.element.height(),this.active.nextAll(".ui-menu-item").each(function(){return i=t(this),i.offset().top-n-r<0}),this.focus(e,i)):this.focus(e,this.activeMenu.children(".ui-menu-item")[this.active?"last":"first"]()))},previousPage:function(e){var i,n,r;if(!this.active)return void this.next(e);this.isFirstItem()||(this._hasScroll()?(n=this.active.offset().top,r=this.element.height(),this.active.prevAll(".ui-menu-item").each(function(){return i=t(this),i.offset().top-n+r>0}),this.focus(e,i)):this.focus(e,this.activeMenu.children(".ui-menu-item").first()))},_hasScroll:function(){return this.element.outerHeight()<this.element.prop("scrollHeight")},select:function(e){this.active=this.active||t(e.target).closest(".ui-menu-item");var i={item:this.active};this.active.has(".ui-menu").length||this.collapseAll(e,!0),this._trigger("select",e,i)}})}(t),function(t,e){t.widget("ui.slider",t.ui.mouse,{version:"1.9.1",widgetEventPrefix:"slide",options:{animate:!1,distance:0,max:100,min:0,orientation:"horizontal",range:!1,step:1,value:0,values:null},_create:function(){var e,i,n=this.options,r=this.element.find(".ui-slider-handle").addClass("ui-state-default ui-corner-all"),a=[];for(this._keySliding=!1,this._mouseSliding=!1,this._animateOff=!0,this._handleIndex=null,this._detectOrientation(),this._mouseInit(),this.element.addClass("ui-slider ui-slider-"+this.orientation+" ui-widget ui-widget-content ui-corner-all"+(n.disabled?" ui-slider-disabled ui-disabled":"")),this.range=t([]),n.range&&(!0===n.range&&(n.values||(n.values=[this._valueMin(),this._valueMin()]),n.values.length&&2!==n.values.length&&(n.values=[n.values[0],n.values[0]])),this.range=t("<div></div>").appendTo(this.element).addClass("ui-slider-range ui-widget-header"+("min"===n.range||"max"===n.range?" ui-slider-range-"+n.range:""))),i=n.values&&n.values.length||1,e=r.length;e<i;e++)a.push("<a class='ui-slider-handle ui-state-default ui-corner-all' 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e=n(this).siblings(".tooltip").addClass("in");e.css({left:n(this).position().left+n(this).width()+5,top:n(this).position().top-n(e).height()/2+n(this).height()/2}).show(),e.click(function(t){t.stopPropagation()}),n(document).bind("click.color-picker",function(){e.hide(),n(document).unbind("click.color-picker")}),t.stopPropagation()}),f=n("<a href='javascript:void(0)'/>").addClass("icon-button arrow-circle").appendTo(h).attr("title","Set new random color").tooltip(),p=n("<div class='tooltip right' style='position: absolute;' />").appendTo(h).hide(),m=n("<div class='tooltip-inner' style='text-align: inherit'></div>").appendTo(p),v=(n("<div class='tooltip-arrow'></div>").appendTo(p),n.farbtastic(m,{width:100,height:100,callback:d,color:s}));h.append(n("<div/>").css("clear","both")),function(t){f.click(function(){t.setColor(l.default.get_random_color())})}(v)}else u.append(n("<input />").attr("id",r).attr("name",r).val(s));e.help&&u.append(n("<div 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t=this,e=this.model.attributes;return this.$el.removeClass().addClass(e.cls).attr("id",e.id),this.$header[e.title?"show":"hide"](),this.$title_text.html(e.title),n.each([this.$content,this.$body],function(t){t[e.nopadding?"addClass":"removeClass"]("no-padding")}),e.icon?this.$title_icon.removeClass().addClass("portlet-title-icon fa").addClass(e.icon).show():this.$title_icon.hide(),this.$title_text[e.collapsible?"addClass":"removeClass"]("no-highlight 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this.$body},show:function(){this.visible=!0,this.$el.fadeIn("fast")},hide:function(){this.visible=!1,this.$el.hide()},enableButton:function(t){this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(t){this.$buttons.find("#"+t).prop("disabled",!0)},hideOperation:function(t){this.$operations.find("#"+t).hide()},showOperation:function(t){this.$operations.find("#"+t).show()},setOperation:function(t,e){this.$operations.find("#"+t).off("click").on("click",e)},title:function(t){return t&&this.$title_text.html(t),this.$title_text.html()},collapse:function(){this.collapsed=!0,this.$content.height("0%"),this.$body.hide(),this.collapsible_button.setIcon("fa-eye-slash")},expand:function(){this.collapsed=!1,this.$content.height("100%"),this.$body.fadeIn("fast"),this.collapsible_button.setIcon("fa-eye")},disable:function(){this.$backdrop.show()},enable:function(){this.$backdrop.hide()},_template:function(){return r("<div/>").append(r("<div/>").addClass("portlet-header").append(r("<div/>").addClass("portlet-operations")).append(r("<div/>").addClass("portlet-title").append(r("<i/>").addClass("portlet-title-icon")).append(r("<span/>").addClass("portlet-title-text")))).append(r("<div/>").addClass("portlet-content").append(r("<div/>").addClass("portlet-body")).append(r("<div/>").addClass("portlet-buttons"))).append(r("<div/>").addClass("portlet-backdrop"))}});e.default={View:c}}).call(e,i(2),i(1),i(0))},,function(t,e,i){(function(t){!function(t){t.fn.farbtastic=function(e){return t.farbtastic(this,e),this},t.farbtastic=function(e,i){var e=t(e)[0];return e.farbtastic||(e.farbtastic=new t._farbtastic(e,i))},t._farbtastic=function(e,i){var n=this;n.linkTo=function(e){return"object"==typeof n.callback&&t(n.callback).unbind("keyup",n.updateValue),n.color=null,"function"==typeof e?n.callback=e:"object"!=typeof e&&"string"!=typeof 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a=Math.floor(i/2);e(a,a,function(t,e,i,a){i=Math.round(255*i),n.ctxMask.fillStyle="rgba("+i+", "+i+", "+i+", "+a+")",n.ctxMask.fillRect(2*t-r-1,2*e-r-1,2,2)})}},n.drawMarkers=function(){var t=i.width,e=Math.ceil(n.markerSize/4),r=n.markerSize-e+1,a=6.28*n.hsl[0],o=Math.sin(a)*n.radius,s=-Math.cos(a)*n.radius,l=2*n.square*(.5-n.hsl[1]),u=2*n.square*(.5-n.hsl[2]),c=n.invert?"#fff":"#000",h=n.invert?"#000":"#fff",d=[{x:o,y:s,r:r,c:"#000",lw:e+1},{x:o,y:s,r:n.markerSize,c:"#fff",lw:e},{x:l,y:u,r:r,c:h,lw:e+1},{x:l,y:u,r:n.markerSize,c:c,lw:e}];n.ctxOverlay.clearRect(-n.mid,-n.mid,t,t);for(var f=0;f<d.length;f++){var p=d[f];n.ctxOverlay.lineWidth=p.lw,n.ctxOverlay.strokeStyle=p.c,n.ctxOverlay.beginPath(),n.ctxOverlay.arc(p.x,p.y,p.r,0,2*Math.PI,!0),n.ctxOverlay.stroke()}},n.updateDisplay=function(){n.invert=.3*n.rgb[0]+.59*n.rgb[1]+.11*n.rgb[2]<=.6,n.solidFill.css("backgroundColor",n.pack(n.HSLToRGB([n.hsl[0],1,.5]))),n.drawMarkers(),"object"==typeof n.callback?(t(n.callback).css({backgroundColor:n.color,color:n.invert?"#fff":"#000"}),t(n.callback).each(function(){"string"==typeof this.value&&this.value!=n.color&&(this.value=n.color)}).change()):"function"==typeof n.callback&&n.callback.call(n,n.color)},n.widgetCoords=function(t){return{x:t.pageX-n.offset.left-n.mid,y:t.pageY-n.offset.top-n.mid}},n.mousedown=function(i){t._farbtastic.dragging||(t(document).bind("mousemove",n.mousemove).bind("mouseup",n.mouseup),t._farbtastic.dragging=!0),n.offset=t(e).offset();var r=n.widgetCoords(i);return n.circleDrag=Math.max(Math.abs(r.x),Math.abs(r.y))>n.square+2,n.mousemove(i),!1},n.mousemove=function(t){var e=n.widgetCoords(t);if(n.circleDrag){var i=Math.atan2(e.x,-e.y)/6.28;n.setHSL([(i+1)%1,n.hsl[1],n.hsl[2]])}else{var r=Math.max(0,Math.min(1,-e.x/n.square/2+.5)),a=Math.max(0,Math.min(1,-e.y/n.square/2+.5));n.setHSL([n.hsl[0],r,a])}return!1},n.mouseup=function(){t(document).unbind("mousemove",n.mousemove),t(document).unbind("mouseup",n.mouseup),t._farbtastic.dragging=!1},n.dec2hex=function(t){return(t<16?"0":"")+t.toString(16)},n.packDX=function(t,e){return"#"+n.dec2hex(e)+n.dec2hex(t)+n.dec2hex(t)+n.dec2hex(t)},n.pack=function(t){var e=Math.round(255*t[0]),i=Math.round(255*t[1]),r=Math.round(255*t[2]);return"#"+n.dec2hex(e)+n.dec2hex(i)+n.dec2hex(r)},n.unpack=function(t){function e(e){return parseInt(t.substring(e,e+2),16)/255}function e(e){return parseInt(t.substring(e,e+1),16)/15}return 7==t.length?[e(1),e(3),e(5)]:4==t.length?[e(1),e(2),e(3)]:void 0},n.HSLToRGB=function(t){var e,i,n=t[0],r=t[1],a=t[2];return i=a<=.5?a*(r+1):a+r-a*r,e=2*a-i,[this.hueToRGB(e,i,n+.33333),this.hueToRGB(e,i,n),this.hueToRGB(e,i,n-.33333)]},n.hueToRGB=function(t,e,i){return i=(i+1)%1,6*i<1?t+(e-t)*i*6:2*i<1?e:3*i<2?t+(e-t)*(.66666-i)*6:t},n.RGBToHSL=function(t){var e=t[0],i=t[1],n=t[2],r=Math.min(e,i,n),a=Math.max(e,i,n),o=a-r,s=0,l=0,u=(r+a)/2;return u>0&&u<1&&(l=o/(u<.5?2*u:2-2*u)),o>0&&(a==e&&a!=i&&(s+=(i-n)/o),a==i&&a!=n&&(s+=2+(n-e)/o),a==n&&a!=e&&(s+=4+(e-i)/o),s/=6),[s,l,u]},i.callback||(i={callback:i}),i=t.extend({width:300,wheelWidth:(i.width||300)/10,callback:null},i),n.initWidget(),t("canvas.farbtastic-overlay",e).mousedown(n.mousedown),i.callback&&n.linkTo(i.callback),n.color||n.setColor("#808080")}}(t)}).call(e,i(0))},function(t,e,i){"use strict";(function(t,i,n){Object.defineProperty(e,"__esModule",{value:!0});var r=t.Model.extend({defaults:{title:"",icon_class:"",on_click:null,menu_options:null,is_menu_button:!0,id:null,href:null,target:null,enabled:!0,visible:!0,tooltip_config:{}}}),a=t.View.extend({initialize:function(){this.model.attributes.tooltip_config={placement:"bottom"},this.model.bind("change",this.render,this)},render:function(){this.$el.tooltip("hide");var t=this.template(this.model.toJSON());return t.tooltip(this.model.get("tooltip_config")),this.$el.replaceWith(t),this.setElement(t),this},events:{click:"click"},click:function(t){return!i.isFunction(this.model.get("on_click"))||(this.model.get("on_click")(t),!1)},template:function(t){var e='title="'+t.title+'" class="icon-button';return t.is_menu_button&&(e+=" menu-button"),e+=" "+t.icon_class,t.enabled||(e+="_disabled"),e+='"',t.id&&(e+=' id="'+t.id+'"'),e+=' href="'+t.href+'"',t.target&&(e+=' target="'+t.target+'"'),t.visible||(e+=' style="display: none;"'),e=t.enabled?"<a "+e+"/>":"<span 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a=t.View.extend({initialize:function(t,e){this.$button=t,this.$button.length||(this.$button=i("<div/>")),this.options=e||[],this.$button.data("popupmenu",this);var n=this;this.$button.click(function(t){return i(".popmenu-wrapper").remove(),n._renderAndShow(t),!1})},_renderAndShow:function(t){this.render(),this.$el.appendTo("body").css(this._getShownPosition(t)).show(),this._setUpCloseBehavior()},render:function(){if(this.$el.addClass("popmenu-wrapper").hide().css({position:"absolute"}).html(this.template(this.$button.attr("id"),this.options)),this.options.length){var t=this;this.$el.find("li").each(function(e,n){var r=t.options[e];r.func&&i(this).children("a.popupmenu-option").click(function(e){r.func.call(t,e,r),e.preventDefault()})})}return this},template:function(t,e){return['<ul id="',t,'-menu" class="dropdown-menu">',this._templateOptions(e),"</ul>"].join("")},_templateOptions:function(t){return t.length?n.map(t,function(t){return t.divider?'<li 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e,i,n,r,a,o=this.dropdown,s=this.container.offset(),l=this.container.outerHeight(!1),c=this.container.outerWidth(!1),u=o.outerHeight(!1),h=t(window),d=h.width(),f=h.height(),p=h.scrollLeft()+d,m=h.scrollTop()+f,v=s.top+l,g=s.left,_=v+u<=m,y=s.top-u>=h.scrollTop(),b=o.outerWidth(!1),w=g+b<=p,x=o.hasClass("select2-drop-above");x?(i=!0,!y&&_&&(n=!0,i=!1)):(i=!1,!_&&y&&(n=!0,i=!0)),n&&(o.hide(),s=this.container.offset(),l=this.container.outerHeight(!1),c=this.container.outerWidth(!1),u=o.outerHeight(!1),p=h.scrollLeft()+d,m=h.scrollTop()+f,v=s.top+l,g=s.left,b=o.outerWidth(!1),w=g+b<=p,o.show(),this.focusSearch()),this.opts.dropdownAutoWidth?(a=t(".select2-results",o)[0],o.addClass("select2-drop-auto-width"),o.css("width",""),b=o.outerWidth(!1)+(a.scrollHeight===a.clientHeight?0:I.width),b>c?c=b:b=c,u=o.outerHeight(!1),w=g+b<=p):this.container.removeClass("select2-drop-auto-width"),"static"!==this.body.css("position")&&(e=this.body.offset(),v-=e.top,g-=e.left),w||(g=s.left+this.container.outerWidth(!1)-b),r={left:g,width:c},i?(r.top=s.top-u,r.bottom="auto",this.container.addClass("select2-drop-above"),o.addClass("select2-drop-above")):(r.top=v,r.bottom="auto",this.container.removeClass("select2-drop-above"),o.removeClass("select2-drop-above")),r=t.extend(r,S(this.opts.dropdownCss,this.opts.element)),o.css(r)},shouldOpen:function(){var e;return!this.opened()&&(!1!==this._enabled&&!0!==this._readonly&&(e=t.Event("select2-opening"),this.opts.element.trigger(e),!e.isDefaultPrevented()))},clearDropdownAlignmentPreference:function(){this.container.removeClass("select2-drop-above"),this.dropdown.removeClass("select2-drop-above")},open:function(){return!!this.shouldOpen()&&(this.opening(),N.on("mousemove.select2Event",function(t){L.x=t.pageX,L.y=t.pageY}),!0)},opening:function(){var e,n=this.containerEventName,r="scroll."+n,a="resize."+n,o="orientationchange."+n;this.container.addClass("select2-dropdown-open").addClass("select2-container-active"),this.clearDropdownAlignmentPreference(),this.dropdown[0]!==this.body.children().last()[0]&&this.dropdown.detach().appendTo(this.body),e=t("#select2-drop-mask"),0==e.length&&(e=t(document.createElement("div")),e.attr("id","select2-drop-mask").attr("class","select2-drop-mask"),e.hide(),e.appendTo(this.body),e.on("mousedown touchstart click",function(n){i(e);var r,a=t("#select2-drop");a.length>0&&(r=a.data("select2"),r.opts.selectOnBlur&&r.selectHighlighted({noFocus:!0}),r.close(),n.preventDefault(),n.stopPropagation())})),this.dropdown.prev()[0]!==e[0]&&this.dropdown.before(e),t("#select2-drop").removeAttr("id"),this.dropdown.attr("id","select2-drop"),e.show(),this.positionDropdown(),this.dropdown.show(),this.positionDropdown(),this.dropdown.addClass("select2-drop-active");var s=this;this.container.parents().add(window).each(function(){t(this).on(a+" "+r+" "+o,function(t){s.opened()&&s.positionDropdown()})})},close:function(){if(this.opened()){var e=this.containerEventName,i="scroll."+e,n="resize."+e,r="orientationchange."+e;this.container.parents().add(window).each(function(){t(this).off(i).off(n).off(r)}),this.clearDropdownAlignmentPreference(),t("#select2-drop-mask").hide(),this.dropdown.removeAttr("id"),this.dropdown.hide(),this.container.removeClass("select2-dropdown-open").removeClass("select2-container-active"),this.results.empty(),N.off("mousemove.select2Event"),this.clearSearch(),this.search.removeClass("select2-active"),this.opts.element.trigger(t.Event("select2-close"))}},externalSearch:function(t){this.open(),this.search.val(t),this.updateResults(!1)},clearSearch:function(){},getMaximumSelectionSize:function(){return S(this.opts.maximumSelectionSize,this.opts.element)},ensureHighlightVisible:function(){var e,i,n,r,a,o,s,l,c=this.results;if(!((i=this.highlight())<0)){if(0==i)return void c.scrollTop(0);e=this.findHighlightableChoices().find(".select2-result-label"),n=t(e[i]),l=(n.offset()||{}).top||0,r=l+n.outerHeight(!0),i===e.length-1&&(s=c.find("li.select2-more-results"),s.length>0&&(r=s.offset().top+s.outerHeight(!0))),a=c.offset().top+c.outerHeight(!0),r>a&&c.scrollTop(c.scrollTop()+(r-a)),o=l-c.offset().top,o<0&&"none"!=n.css("display")&&c.scrollTop(c.scrollTop()+o)}},findHighlightableChoices:function(){return this.results.find(".select2-result-selectable:not(.select2-disabled):not(.select2-selected)")},moveHighlight:function(e){for(var i=this.findHighlightableChoices(),n=this.highlight();n>-1&&n<i.length;){n+=e;var r=t(i[n]);if(r.hasClass("select2-result-selectable")&&!r.hasClass("select2-disabled")&&!r.hasClass("select2-selected")){this.highlight(n);break}}},highlight:function(e){var i,n,a=this.findHighlightableChoices();if(0===arguments.length)return r(a.filter(".select2-highlighted")[0],a.get());e>=a.length&&(e=a.length-1),e<0&&(e=0),this.removeHighlight(),i=t(a[e]),i.addClass("select2-highlighted"),this.search.attr("aria-activedescendant",i.find(".select2-result-label").attr("id")),this.ensureHighlightVisible(),this.liveRegion.text(i.text()),(n=i.data("select2-data"))&&this.opts.element.trigger({type:"select2-highlight",val:this.id(n),choice:n})},removeHighlight:function(){this.results.find(".select2-highlighted").removeClass("select2-highlighted")},touchMoved:function(){this._touchMoved=!0},clearTouchMoved:function(){this._touchMoved=!1},countSelectableResults:function(){return this.findHighlightableChoices().length},highlightUnderEvent:function(e){var i=t(e.target).closest(".select2-result-selectable");if(i.length>0&&!i.is(".select2-highlighted")){var n=this.findHighlightableChoices();this.highlight(n.index(i))}else 0==i.length&&this.removeHighlight()},loadMoreIfNeeded:function(){var t=this.results,e=t.find("li.select2-more-results"),i=this.resultsPage+1,n=this,r=this.search.val(),a=this.context;0!==e.length&&e.offset().top-t.offset().top-t.height()<=this.opts.loadMorePadding&&(e.addClass("select2-active"),this.opts.query({element:this.opts.element,term:r,page:i,context:a,matcher:this.opts.matcher,callback:this.bind(function(o){n.opened()&&(n.opts.populateResults.call(this,t,o.results,{term:r,page:i,context:a}),n.postprocessResults(o,!1,!1),!0===o.more?(e.detach().appendTo(t).text(S(n.opts.formatLoadMore,n.opts.element,i+1)),window.setTimeout(function(){n.loadMoreIfNeeded()},10)):e.remove(),n.positionDropdown(),n.resultsPage=i,n.context=o.context,this.opts.element.trigger({type:"select2-loaded",items:o}))})}))},tokenize:function(){},updateResults:function(i){function n(){c.removeClass("select2-active"),d.positionDropdown(),u.find(".select2-no-results,.select2-selection-limit,.select2-searching").length?d.liveRegion.text(u.text()):d.liveRegion.text(d.opts.formatMatches(u.find(".select2-result-selectable").length))}function r(t){u.html(t),n()}var a,s,l,c=this.search,u=this.results,h=this.opts,d=this,f=c.val(),p=t.data(this.container,"select2-last-term");if((!0===i||!p||!o(f,p))&&(t.data(this.container,"select2-last-term",f),!0===i||!1!==this.showSearchInput&&this.opened())){l=++this.queryCount;var m=this.getMaximumSelectionSize();if(m>=1&&(a=this.data(),t.isArray(a)&&a.length>=m&&C(h.formatSelectionTooBig,"formatSelectionTooBig")))return void r("<li class='select2-selection-limit'>"+S(h.formatSelectionTooBig,h.element,m)+"</li>");if(c.val().length<h.minimumInputLength)return r(C(h.formatInputTooShort,"formatInputTooShort")?"<li class='select2-no-results'>"+S(h.formatInputTooShort,h.element,c.val(),h.minimumInputLength)+"</li>":""),void(i&&this.showSearch&&this.showSearch(!0));if(h.maximumInputLength&&c.val().length>h.maximumInputLength)return void r(C(h.formatInputTooLong,"formatInputTooLong")?"<li class='select2-no-results'>"+S(h.formatInputTooLong,h.element,c.val(),h.maximumInputLength)+"</li>":"");h.formatSearching&&0===this.findHighlightableChoices().length&&r("<li class='select2-searching'>"+S(h.formatSearching,h.element)+"</li>"),c.addClass("select2-active"),this.removeHighlight(),s=this.tokenize(),s!=e&&null!=s&&c.val(s),this.resultsPage=1,h.query({element:h.element,term:c.val(),page:this.resultsPage,context:null,matcher:h.matcher,callback:this.bind(function(a){var s;if(l==this.queryCount){if(!this.opened())return void this.search.removeClass("select2-active");if(a.hasError!==e&&C(h.formatAjaxError,"formatAjaxError"))return void r("<li class='select2-ajax-error'>"+S(h.formatAjaxError,h.element,a.jqXHR,a.textStatus,a.errorThrown)+"</li>");if(this.context=a.context===e?null:a.context,this.opts.createSearchChoice&&""!==c.val()&&(s=this.opts.createSearchChoice.call(d,c.val(),a.results))!==e&&null!==s&&d.id(s)!==e&&null!==d.id(s)&&0===t(a.results).filter(function(){return o(d.id(this),d.id(s))}).length&&this.opts.createSearchChoicePosition(a.results,s),0===a.results.length&&C(h.formatNoMatches,"formatNoMatches"))return void r("<li class='select2-no-results'>"+S(h.formatNoMatches,h.element,c.val())+"</li>");u.empty(),d.opts.populateResults.call(this,u,a.results,{term:c.val(),page:this.resultsPage,context:null}),!0===a.more&&C(h.formatLoadMore,"formatLoadMore")&&(u.append("<li class='select2-more-results'>"+h.escapeMarkup(S(h.formatLoadMore,h.element,this.resultsPage))+"</li>"),window.setTimeout(function(){d.loadMoreIfNeeded()},10)),this.postprocessResults(a,i),n(),this.opts.element.trigger({type:"select2-loaded",items:a})}})})}},cancel:function(){this.close()},blur:function(){this.opts.selectOnBlur&&this.selectHighlighted({noFocus:!0}),this.close(),this.container.removeClass("select2-container-active"),this.search[0]===document.activeElement&&this.search.blur(),this.clearSearch(),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus")},focusSearch:function(){f(this.search)},selectHighlighted:function(t){if(this._touchMoved)return void this.clearTouchMoved();var e=this.highlight(),i=this.results.find(".select2-highlighted"),n=i.closest(".select2-result").data("select2-data");n?(this.highlight(e),this.onSelect(n,t)):t&&t.noFocus&&this.close()},getPlaceholder:function(){var t;return this.opts.element.attr("placeholder")||this.opts.element.attr("data-placeholder")||this.opts.element.data("placeholder")||this.opts.placeholder||((t=this.getPlaceholderOption())!==e?t.text():e)},getPlaceholderOption:function(){if(this.select){var i=this.select.children("option").first();if(this.opts.placeholderOption!==e)return"first"===this.opts.placeholderOption&&i||"function"==typeof this.opts.placeholderOption&&this.opts.placeholderOption(this.select);if(""===t.trim(i.text())&&""===i.val())return i}},initContainerWidth:function(){function i(){var i,n,r,a,o,s;if("off"===this.opts.width)return null;if("element"===this.opts.width)return 0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px";if("copy"===this.opts.width||"resolve"===this.opts.width){if((i=this.opts.element.attr("style"))!==e)for(n=i.split(";"),a=0,o=n.length;a<o;a+=1)if(s=n[a].replace(/\s/g,""),null!==(r=s.match(/^width:(([-+]?([0-9]*\.)?[0-9]+)(px|em|ex|%|in|cm|mm|pt|pc))/i))&&r.length>=1)return r[1];return"resolve"===this.opts.width?(i=this.opts.element.css("width"),i.indexOf("%")>0?i:0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px"):null}return t.isFunction(this.opts.width)?this.opts.width():this.opts.width}var n=i.call(this);null!==n&&this.container.css("width",n)}}),j=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container"}).html(["<a href='javascript:void(0)' class='select2-choice' tabindex='-1'>","   <span class='select2-chosen'>&#160;</span><abbr class='select2-search-choice-close'></abbr>","   <span class='select2-arrow' role='presentation'><b role='presentation'></b></span>","</a>","<label for='' class='select2-offscreen'></label>","<input class='select2-focusser select2-offscreen' type='text' aria-haspopup='true' role='button' />","<div class='select2-drop select2-display-none'>","   <div class='select2-search'>","       <label for='' class='select2-offscreen'></label>","       <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input' role='combobox' aria-expanded='true'","       aria-autocomplete='list' />","   </div>","   <ul class='select2-results' role='listbox'>","   </ul>","</div>"].join(""))},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.focusser.prop("disabled",!this.isInterfaceEnabled())},opening:function(){var i,n,r;this.opts.minimumResultsForSearch>=0&&this.showSearch(!0),this.parent.opening.apply(this,arguments),!1!==this.showSearchInput&&this.search.val(this.focusser.val()),this.opts.shouldFocusInput(this)&&(this.search.focus(),i=this.search.get(0),i.createTextRange?(n=i.createTextRange(),n.collapse(!1),n.select()):i.setSelectionRange&&(r=this.search.val().length,i.setSelectionRange(r,r))),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.focusser.prop("disabled",!0).val(""),this.updateResults(!0),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&(this.parent.close.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},focus:function(){this.opened()?this.close():(this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},isFocused:function(){return this.container.hasClass("select2-container-active")},cancel:function(){this.parent.cancel.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus()},destroy:function(){t("label[for='"+this.focusser.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),M.call(this,"selection","focusser")},initContainer:function(){var e,n,r=this.container,a=this.dropdown,o=P();this.opts.minimumResultsForSearch<0?this.showSearch(!1):this.showSearch(!0),this.selection=e=r.find(".select2-choice"),this.focusser=r.find(".select2-focusser"),e.find(".select2-chosen").attr("id","select2-chosen-"+o),this.focusser.attr("aria-labelledby","select2-chosen-"+o),this.results.attr("id","select2-results-"+o),this.search.attr("aria-owns","select2-results-"+o),this.focusser.attr("id","s2id_autogen"+o),n=t("label[for='"+this.opts.element.attr("id")+"']"),this.focusser.prev().text(n.text()).attr("for",this.focusser.attr("id"));var s=this.opts.element.attr("title");this.opts.element.attr("title",s||n.text()),this.focusser.attr("tabindex",this.elementTabIndex),this.search.attr("id",this.focusser.attr("id")+"_search"),this.search.prev().text(t("label[for='"+this.focusser.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&229!=t.keyCode){if(t.which===O.PAGE_UP||t.which===O.PAGE_DOWN)return void m(t);switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void m(t);case O.ENTER:return this.selectHighlighted(),void m(t);case O.TAB:return void this.selectHighlighted({noFocus:!0});case O.ESC:return this.cancel(t),void m(t)}}})),this.search.on("blur",this.bind(function(t){document.activeElement===this.body.get(0)&&window.setTimeout(this.bind(function(){this.opened()&&this.search.focus()}),0)})),this.focusser.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.ESC){if(!1===this.opts.openOnEnter&&t.which===O.ENTER)return void m(t);if(t.which==O.DOWN||t.which==O.UP||t.which==O.ENTER&&this.opts.openOnEnter){if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return;return this.open(),void m(t)}return t.which==O.DELETE||t.which==O.BACKSPACE?(this.opts.allowClear&&this.clear(),void m(t)):void 0}})),c(this.focusser),this.focusser.on("keyup-change input",this.bind(function(t){if(this.opts.minimumResultsForSearch>=0){if(t.stopPropagation(),this.opened())return;this.open()}})),e.on("mousedown touchstart","abbr",this.bind(function(t){this.isInterfaceEnabled()&&(this.clear(),v(t),this.close(),this.selection.focus())})),e.on("mousedown touchstart",this.bind(function(n){i(e),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.opened()?this.close():this.isInterfaceEnabled()&&this.open(),m(n)})),a.on("mousedown touchstart",this.bind(function(){this.opts.shouldFocusInput(this)&&this.search.focus()})),e.on("focus",this.bind(function(t){m(t)})),this.focusser.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})).on("blur",this.bind(function(){this.opened()||(this.container.removeClass("select2-container-active"),this.opts.element.trigger(t.Event("select2-blur")))})),this.search.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.setPlaceholder()},clear:function(e){var i=this.selection.data("select2-data");if(i){var n=t.Event("select2-clearing");if(this.opts.element.trigger(n),n.isDefaultPrevented())return;var r=this.getPlaceholderOption();this.opts.element.val(r?r.val():""),this.selection.find(".select2-chosen").empty(),this.selection.removeData("select2-data"),this.setPlaceholder(),!1!==e&&(this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}))}},initSelection:function(){if(this.isPlaceholderOptionSelected())this.updateSelection(null),this.close(),this.setPlaceholder();else{var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.setPlaceholder(),t.nextSearchTerm=t.opts.nextSearchTerm(i,t.search.val()))})}},isPlaceholderOptionSelected:function(){var t;return this.getPlaceholder()!==e&&((t=this.getPlaceholderOption())!==e&&t.prop("selected")||""===this.opts.element.val()||this.opts.element.val()===e||null===this.opts.element.val())},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=t.find("option").filter(function(){return this.selected&&!this.disabled});e(i.optionToData(n))}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=i.val(),a=null;e.query({matcher:function(t,i,n){var s=o(r,e.id(n));return s&&(a=n),s},callback:t.isFunction(n)?function(){n(a)}:t.noop})}),e},getPlaceholder:function(){return this.select&&this.getPlaceholderOption()===e?e:this.parent.getPlaceholder.apply(this,arguments)},setPlaceholder:function(){var t=this.getPlaceholder();if(this.isPlaceholderOptionSelected()&&t!==e){if(this.select&&this.getPlaceholderOption()===e)return;this.selection.find(".select2-chosen").html(this.opts.escapeMarkup(t)),this.selection.addClass("select2-default"),this.container.removeClass("select2-allowclear")}},postprocessResults:function(t,e,i){var n=0,r=this;if(this.findHighlightableChoices().each2(function(t,e){if(o(r.id(e.data("select2-data")),r.opts.element.val()))return n=t,!1}),!1!==i&&(!0===e&&n>=0?this.highlight(n):this.highlight(0)),!0===e){var a=this.opts.minimumResultsForSearch;a>=0&&this.showSearch(T(t.results)>=a)}},showSearch:function(e){this.showSearchInput!==e&&(this.showSearchInput=e,this.dropdown.find(".select2-search").toggleClass("select2-search-hidden",!e),this.dropdown.find(".select2-search").toggleClass("select2-offscreen",!e),t(this.dropdown,this.container).toggleClass("select2-with-searchbox",e))},onSelect:function(t,e){if(this.triggerSelect(t)){var i=this.opts.element.val(),n=this.data();this.opts.element.val(this.id(t)),this.updateSelection(t),this.opts.element.trigger({type:"select2-selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.close(),e&&e.noFocus||!this.opts.shouldFocusInput(this)||this.focusser.focus(),o(i,this.id(t))||this.triggerChange({added:t,removed:n})}},updateSelection:function(t){var i,n,r=this.selection.find(".select2-chosen");this.selection.data("select2-data",t),r.empty(),null!==t&&(i=this.opts.formatSelection(t,r,this.opts.escapeMarkup)),i!==e&&r.append(i),n=this.opts.formatSelectionCssClass(t,r),n!==e&&r.addClass(n),this.selection.removeClass("select2-default"),this.opts.allowClear&&this.getPlaceholder()!==e&&this.container.addClass("select2-allowclear")},val:function(){var t,i=!1,n=null,r=this,a=this.data();if(0===arguments.length)return this.opts.element.val();if(t=arguments[0],arguments.length>1&&(i=arguments[1]),this.select)this.select.val(t).find("option").filter(function(){return this.selected}).each2(function(t,e){return n=r.optionToData(e),!1}),this.updateSelection(n),this.setPlaceholder(),i&&this.triggerChange({added:n,removed:a});else{if(!t&&0!==t)return void this.clear(i);if(this.opts.initSelection===e)throw new Error("cannot call val() if initSelection() is not defined");this.opts.element.val(t),this.opts.initSelection(this.opts.element,function(t){r.opts.element.val(t?r.id(t):""),r.updateSelection(t),r.setPlaceholder(),i&&r.triggerChange({added:t,removed:a})})}},clearSearch:function(){this.search.val(""),this.focusser.val("")},data:function(t){var i,n=!1;if(0===arguments.length)return i=this.selection.data("select2-data"),i==e&&(i=null),i;arguments.length>1&&(n=arguments[1]),t?(i=this.data(),this.opts.element.val(t?this.id(t):""),this.updateSelection(t),n&&this.triggerChange({added:t,removed:i})):this.clear(n)}}),D=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container select2-container-multi"}).html(["<ul class='select2-choices'>","  <li class='select2-search-field'>","    <label for='' class='select2-offscreen'></label>","    <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input'>","  </li>","</ul>","<div class='select2-drop select2-drop-multi select2-display-none'>","   <ul class='select2-results'>","   </ul>","</div>"].join(""))},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=[];t.find("option").filter(function(){return this.selected&&!this.disabled}).each2(function(t,e){n.push(i.optionToData(e))}),e(n)}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=s(i.val(),e.separator),a=[];e.query({matcher:function(i,n,s){var l=t.grep(r,function(t){return o(t,e.id(s))}).length;return l&&a.push(s),l},callback:t.isFunction(n)?function(){for(var t=[],i=0;i<r.length;i++)for(var s=r[i],l=0;l<a.length;l++){var c=a[l];if(o(s,e.id(c))){t.push(c),a.splice(l,1);break}}n(t)}:t.noop})}),e},selectChoice:function(t){var e=this.container.find(".select2-search-choice-focus");e.length&&t&&t[0]==e[0]||(e.length&&this.opts.element.trigger("choice-deselected",e),e.removeClass("select2-search-choice-focus"),t&&t.length&&(this.close(),t.addClass("select2-search-choice-focus"),this.opts.element.trigger("choice-selected",t)))},destroy:function(){t("label[for='"+this.search.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),M.call(this,"searchContainer","selection")},initContainer:function(){var e,i=".select2-choices";this.searchContainer=this.container.find(".select2-search-field"),this.selection=e=this.container.find(i);var n=this;this.selection.on("click",".select2-search-choice:not(.select2-locked)",function(e){n.search[0].focus(),n.selectChoice(t(this))}),this.search.attr("id","s2id_autogen"+P()),this.search.prev().text(t("label[for='"+this.opts.element.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("input paste",this.bind(function(){this.search.attr("placeholder")&&0==this.search.val().length||this.isInterfaceEnabled()&&(this.opened()||this.open())})),this.search.attr("tabindex",this.elementTabIndex),this.keydowns=0,this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()){++this.keydowns;var i=e.find(".select2-search-choice-focus"),n=i.prev(".select2-search-choice:not(.select2-locked)"),r=i.next(".select2-search-choice:not(.select2-locked)"),a=p(this.search);if(i.length&&(t.which==O.LEFT||t.which==O.RIGHT||t.which==O.BACKSPACE||t.which==O.DELETE||t.which==O.ENTER)){var o=i;return t.which==O.LEFT&&n.length?o=n:t.which==O.RIGHT?o=r.length?r:null:t.which===O.BACKSPACE?this.unselect(i.first())&&(this.search.width(10),o=n.length?n:r):t.which==O.DELETE?this.unselect(i.first())&&(this.search.width(10),o=r.length?r:null):t.which==O.ENTER&&(o=null),this.selectChoice(o),m(t),void(o&&o.length||this.open())}if((t.which===O.BACKSPACE&&1==this.keydowns||t.which==O.LEFT)&&0==a.offset&&!a.length)return this.selectChoice(e.find(".select2-search-choice:not(.select2-locked)").last()),void m(t);if(this.selectChoice(null),this.opened())switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void m(t);case O.ENTER:return this.selectHighlighted(),void m(t);case O.TAB:return this.selectHighlighted({noFocus:!0}),void this.close();case O.ESC:return this.cancel(t),void m(t)}if(t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.BACKSPACE&&t.which!==O.ESC){if(t.which===O.ENTER){if(!1===this.opts.openOnEnter)return;if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return}this.open(),t.which!==O.PAGE_UP&&t.which!==O.PAGE_DOWN||m(t),t.which===O.ENTER&&m(t)}}})),this.search.on("keyup",this.bind(function(t){this.keydowns=0,this.resizeSearch()})),this.search.on("blur",this.bind(function(e){this.container.removeClass("select2-container-active"),this.search.removeClass("select2-focused"),this.selectChoice(null),this.opened()||this.clearSearch(),e.stopImmediatePropagation(),this.opts.element.trigger(t.Event("select2-blur"))})),this.container.on("click",i,this.bind(function(e){this.isInterfaceEnabled()&&(t(e.target).closest(".select2-search-choice").length>0||(this.selectChoice(null),this.clearPlaceholder(),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.open(),this.focusSearch(),e.preventDefault()))})),this.container.on("focus",i,this.bind(function(){this.isInterfaceEnabled()&&(this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"),this.clearPlaceholder())})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.clearSearch()},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.search.prop("disabled",!this.isInterfaceEnabled())},initSelection:function(){if(""===this.opts.element.val()&&""===this.opts.element.text()&&(this.updateSelection([]),this.close(),this.clearSearch()),this.select||""!==this.opts.element.val()){var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.clearSearch())})}},clearSearch:function(){var t=this.getPlaceholder(),i=this.getMaxSearchWidth();t!==e&&0===this.getVal().length&&!1===this.search.hasClass("select2-focused")?(this.search.val(t).addClass("select2-default"),this.search.width(i>0?i:this.container.css("width"))):this.search.val("").width(10)},clearPlaceholder:function(){this.search.hasClass("select2-default")&&this.search.val("").removeClass("select2-default")},opening:function(){this.clearPlaceholder(),this.resizeSearch(),this.parent.opening.apply(this,arguments),this.focusSearch(),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.updateResults(!0),this.opts.shouldFocusInput(this)&&this.search.focus(),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&this.parent.close.apply(this,arguments)},focus:function(){this.close(),this.search.focus()},isFocused:function(){return this.search.hasClass("select2-focused")},updateSelection:function(e){var i=[],n=[],a=this;t(e).each(function(){r(a.id(this),i)<0&&(i.push(a.id(this)),n.push(this))}),e=n,this.selection.find(".select2-search-choice").remove(),t(e).each(function(){a.addSelectedChoice(this)}),a.postprocessResults()},tokenize:function(){var t=this.search.val();null!=(t=this.opts.tokenizer.call(this,t,this.data(),this.bind(this.onSelect),this.opts))&&t!=e&&(this.search.val(t),t.length>0&&this.open())},onSelect:function(t,i){this.triggerSelect(t)&&""!==t.text&&(this.addSelectedChoice(t),this.opts.element.trigger({type:"selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.moveHighlight(1),!this.select&&this.opts.closeOnSelect||this.postprocessResults(t,!1,!0===this.opts.closeOnSelect),this.opts.closeOnSelect?(this.clearSearch(),this.updateResults(),this.close(),this.search.width(10)):this.countSelectableResults()>0?(this.search.width(10),this.resizeSearch(),this.getMaximumSelectionSize()>0&&this.val().length>=this.getMaximumSelectionSize()?this.updateResults(!0):this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.updateResults(),this.search.select()),this.positionDropdown()):(this.close(),this.search.width(10)),this.triggerChange({added:t}),i&&i.noFocus||this.focusSearch())},cancel:function(){this.close(),this.focusSearch()},addSelectedChoice:function(i){var n,r,a=!i.locked,o=t("<li class='select2-search-choice'>    <div></div>    <a href='#' class='select2-search-choice-close' tabindex='-1'></a></li>"),s=t("<li class='select2-search-choice select2-locked'><div></div></li>"),l=a?o:s,c=this.id(i),u=this.getVal();n=this.opts.formatSelection(i,l.find("div"),this.opts.escapeMarkup),n!=e&&l.find("div").replaceWith("<div>"+n+"</div>"),r=this.opts.formatSelectionCssClass(i,l.find("div")),r!=e&&l.addClass(r),a&&l.find(".select2-search-choice-close").on("mousedown",m).on("click dblclick",this.bind(function(e){this.isInterfaceEnabled()&&(this.unselect(t(e.target)),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus"),m(e),this.close(),this.focusSearch())})).on("focus",this.bind(function(){this.isInterfaceEnabled()&&(this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"))})),l.data("select2-data",i),l.insertBefore(this.searchContainer),u.push(c),this.setVal(u)},unselect:function(e){var i,n,a=this.getVal();if(e=e.closest(".select2-search-choice"),0===e.length)throw"Invalid argument: "+e+". Must be .select2-search-choice";if(i=e.data("select2-data")){var o=t.Event("select2-removing");if(o.val=this.id(i),o.choice=i,this.opts.element.trigger(o),o.isDefaultPrevented())return!1;for(;(n=r(this.id(i),a))>=0;)a.splice(n,1),this.setVal(a),this.select&&this.postprocessResults();return e.remove(),this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}),!0}},postprocessResults:function(t,e,i){var n=this.getVal(),a=this.results.find(".select2-result"),o=this.results.find(".select2-result-with-children"),s=this;a.each2(function(t,e){r(s.id(e.data("select2-data")),n)>=0&&(e.addClass("select2-selected"),e.find(".select2-result-selectable").addClass("select2-selected"))}),o.each2(function(t,e){e.is(".select2-result-selectable")||0!==e.find(".select2-result-selectable:not(.select2-selected)").length||e.addClass("select2-selected")}),-1==this.highlight()&&!1!==i&&s.highlight(0),!this.opts.createSearchChoice&&!a.filter(".select2-result:not(.select2-selected)").length>0&&(!t||t&&!t.more&&0===this.results.find(".select2-no-results").length)&&C(s.opts.formatNoMatches,"formatNoMatches")&&this.results.append("<li class='select2-no-results'>"+S(s.opts.formatNoMatches,s.opts.element,s.search.val())+"</li>")},getMaxSearchWidth:function(){return this.selection.width()-l(this.search)},resizeSearch:function(){var t,e,i,n,r,a=l(this.search);t=g(this.search)+10,e=this.search.offset().left,i=this.selection.width(),n=this.selection.offset().left,r=i-(e-n)-a,r<t&&(r=i-a),r<40&&(r=i-a),r<=0&&(r=t),this.search.width(Math.floor(r))},getVal:function(){var t;return this.select?(t=this.select.val(),null===t?[]:t):(t=this.opts.element.val(),s(t,this.opts.separator))},setVal:function(e){var i;this.select?this.select.val(e):(i=[],t(e).each(function(){r(this,i)<0&&i.push(this)}),this.opts.element.val(0===i.length?"":i.join(this.opts.separator)))},buildChangeDetails:function(t,e){for(var e=e.slice(0),t=t.slice(0),i=0;i<e.length;i++)for(var n=0;n<t.length;n++)o(this.opts.id(e[i]),this.opts.id(t[n]))&&(e.splice(i,1),i>0&&i--,t.splice(n,1),n--);return{added:e,removed:t}},val:function(i,n){var r,a=this;if(0===arguments.length)return this.getVal();if(r=this.data(),r.length||(r=[]),!i&&0!==i)return this.opts.element.val(""),this.updateSelection([]),this.clearSearch(),void(n&&this.triggerChange({added:this.data(),removed:r}));if(this.setVal(i),this.select)this.opts.initSelection(this.select,this.bind(this.updateSelection)),n&&this.triggerChange(this.buildChangeDetails(r,this.data()));else{if(this.opts.initSelection===e)throw new Error("val() cannot be called if initSelection() is not defined");this.opts.initSelection(this.opts.element,function(e){var i=t.map(e,a.id);a.setVal(i),a.updateSelection(e),a.clearSearch(),n&&a.triggerChange(a.buildChangeDetails(r,a.data()))})}this.clearSearch()},onSortStart:function(){if(this.select)throw new Error("Sorting of elements is not supported when attached to <select>. Attach to <input type='hidden'/> instead.");this.search.width(0),this.searchContainer.hide()},onSortEnd:function(){var e=[],i=this;this.searchContainer.show(),this.searchContainer.appendTo(this.searchContainer.parent()),this.resizeSearch(),this.selection.find(".select2-search-choice").each(function(){e.push(i.opts.id(t(this).data("select2-data")))}),this.setVal(e),this.triggerChange()},data:function(e,i){var n,r,a=this;if(0===arguments.length)return this.selection.children(".select2-search-choice").map(function(){return t(this).data("select2-data")}).get();r=this.data(),e||(e=[]),n=t.map(e,function(t){return a.opts.id(t)}),this.setVal(n),this.updateSelection(e),this.clearSearch(),i&&this.triggerChange(this.buildChangeDetails(r,this.data()))}}),t.fn.select2=function(){var i,n,a,o,s,l=Array.prototype.slice.call(arguments,0),c=["val","destroy","opened","open","close","focus","isFocused","container","dropdown","onSortStart","onSortEnd","enable","disable","readonly","positionDropdown","data","search"],u=["opened","isFocused","container","dropdown"],h=["val","data"],d={search:"externalSearch"};return this.each(function(){if(0===l.length||"object"==typeof l[0])i=0===l.length?{}:t.extend({},l[0]),i.element=t(this),"select"===i.element.get(0).tagName.toLowerCase()?s=i.element.prop("multiple"):(s=i.multiple||!1,"tags"in i&&(i.multiple=s=!0)),n=s?new window.Select2.class.multi:new window.Select2.class.single,n.init(i);else{if("string"!=typeof l[0])throw"Invalid arguments to select2 plugin: "+l;if(r(l[0],c)<0)throw"Unknown method: "+l[0];if(o=e,(n=t(this).data("select2"))===e)return;if(a=l[0],"container"===a?o=n.container:"dropdown"===a?o=n.dropdown:(d[a]&&(a=d[a]),o=n[a].apply(n,l.slice(1))),r(l[0],u)>=0||r(l[0],h)>=0&&1==l.length)return!1}}),o===e?this:o},t.fn.select2.defaults={width:"copy",loadMorePadding:0,closeOnSelect:!0,openOnEnter:!0,containerCss:{},dropdownCss:{},containerCssClass:"",dropdownCssClass:"",formatResult:function(t,e,i,n){var r=[];return y(t.text,i.term,r,n),r.join("")},formatSelection:function(t,i,n){return t?n(t.text):e},sortResults:function(t,e,i){return t},formatResultCssClass:function(t){return t.css},formatSelectionCssClass:function(t,i){return e},minimumResultsForSearch:0,minimumInputLength:0,maximumInputLength:null,maximumSelectionSize:0,id:function(t){return t==e?null:t.id},matcher:function(t,e){return n(""+e).toUpperCase().indexOf(n(""+t).toUpperCase())>=0},separator:",",tokenSeparators:[],tokenizer:A,escapeMarkup:b,blurOnChange:!1,selectOnBlur:!1,adaptContainerCssClass:function(t){return t},adaptDropdownCssClass:function(t){return null},nextSearchTerm:function(t,i){return e},searchInputPlaceholder:"",createSearchChoicePosition:"top",shouldFocusInput:function(t){return!(("ontouchstart"in window||navigator.msMaxTouchPoints>0)&&t.opts.minimumResultsForSearch<0)}},t.fn.select2.locales=[],t.fn.select2.locales.en={formatMatches:function(t){return 1===t?"One result is available, press enter to select it.":t+" results are available, use up and down arrow keys to navigate."},formatNoMatches:function(){return"No matches found"},formatAjaxError:function(t,e,i){return"Loading failed"},formatInputTooShort:function(t,e){var i=e-t.length;return"Please enter "+i+" or more character"+(1==i?"":"s")},formatInputTooLong:function(t,e){var i=t.length-e;return"Please delete "+i+" character"+(1==i?"":"s")},formatSelectionTooBig:function(t){return"You can only select "+t+" item"+(1==t?"":"s")},formatLoadMore:function(t){return"Loading more results…"},formatSearching:function(){return"Searching…"}},t.extend(t.fn.select2.defaults,t.fn.select2.locales.en),t.fn.select2.ajaxDefaults={transport:t.ajax,params:{type:"GET",cache:!1,dataType:"json"}},window.Select2={query:{ajax:w,local:x,tags:k},util:{debounce:h,markMatch:y,escapeMarkup:b,stripDiacritics:n},class:{abstract:$,single:j,multi:D}}}}(t)}).call(e,i(0))},function(t,e,i){(function(t){!function(t,e){var i,n;n=e.document,i=function(){function i(i){var n;try{n=e.localStorage}catch(t){n=!1}this._options=t.extend({name:"tour",steps:[],container:"body",autoscroll:!0,keyboard:!0,storage:n,debug:!1,backdrop:!1,backdropContainer:"body",backdropPadding:0,redirect:!0,orphan:!1,duration:!1,delay:!1,basePath:"",template:'<div class="popover" role="tooltip"> <div class="arrow"></div> <h3 class="popover-title"></h3> <div class="popover-content"></div> <div class="popover-navigation"> <div class="btn-group"> <button class="btn btn-sm btn-default" data-role="prev">&laquo; Prev</button> <button class="btn btn-sm btn-default" data-role="next">Next &raquo;</button> <button class="btn btn-sm btn-default" data-role="pause-resume" data-pause-text="Pause" data-resume-text="Resume">Pause</button> </div> <button class="btn btn-sm btn-default" data-role="end">End tour</button> </div> </div>',afterSetState:function(t,e){},afterGetState:function(t,e){},afterRemoveState:function(t){},onStart:function(t){},onEnd:function(t){},onShow:function(t){},onShown:function(t){},onHide:function(t){},onHidden:function(t){},onNext:function(t){},onPrev:function(t){},onPause:function(t,e){},onResume:function(t,e){},onRedirectError:function(t){}},i),this._force=!1,this._inited=!1,this._current=null,this.backdrop={overlay:null,$element:null,$background:null,backgroundShown:!1,overlayElementShown:!1}}return i.prototype.addSteps=function(t){var e,i,n;for(i=0,n=t.length;i<n;i++)e=t[i],this.addStep(e);return this},i.prototype.addStep=function(t){return this._options.steps.push(t),this},i.prototype.getStep=function(e){if(null!=this._options.steps[e])return t.extend({id:"step-"+e,path:"",host:"",placement:"right",title:"",content:"<p></p>",next:e===this._options.steps.length-1?-1:e+1,prev:e-1,animation:!0,container:this._options.container,autoscroll:this._options.autoscroll,backdrop:this._options.backdrop,backdropContainer:this._options.backdropContainer,backdropPadding:this._options.backdropPadding,redirect:this._options.redirect,reflexElement:this._options.steps[e].element,orphan:this._options.orphan,duration:this._options.duration,delay:this._options.delay,template:this._options.template,onShow:this._options.onShow,onShown:this._options.onShown,onHide:this._options.onHide,onHidden:this._options.onHidden,onNext:this._options.onNext,onPrev:this._options.onPrev,onPause:this._options.onPause,onResume:this._options.onResume,onRedirectError:this._options.onRedirectError},this._options.steps[e])},i.prototype.init=function(t){return this._force=t,this.ended()?(this._debug("Tour ended, init prevented."),this):(this.setCurrentStep(),this._initMouseNavigation(),this._initKeyboardNavigation(),this._onResize(function(t){return function(){return t.showStep(t._current)}}(this)),null!==this._current&&this.showStep(this._current),this._inited=!0,this)},i.prototype.start=function(t){var e;return null==t&&(t=!1),this._inited||this.init(t),null===this._current&&(e=this._makePromise(null!=this._options.onStart?this._options.onStart(this):void 0),this._callOnPromiseDone(e,this.showStep,0)),this},i.prototype.next=function(){var t;return t=this.hideStep(this._current),this._callOnPromiseDone(t,this._showNextStep)},i.prototype.prev=function(){var t;return t=this.hideStep(this._current),this._callOnPromiseDone(t,this._showPrevStep)},i.prototype.goTo=function(t){var e;return e=this.hideStep(this._current),this._callOnPromiseDone(e,this.showStep,t)},i.prototype.end=function(){var i,r;return i=function(i){return function(r){if(t(n).off("click.tour-"+i._options.name),t(n).off("keyup.tour-"+i._options.name),t(e).off("resize.tour-"+i._options.name),i._setState("end","yes"),i._inited=!1,i._force=!1,i._clearTimer(),null!=i._options.onEnd)return i._options.onEnd(i)}}(this),r=this.hideStep(this._current),this._callOnPromiseDone(r,i)},i.prototype.ended=function(){return!this._force&&!!this._getState("end")},i.prototype.restart=function(){return this._removeState("current_step"),this._removeState("end"),this._removeState("redirect_to"),this.start()},i.prototype.pause=function(){var t;return(t=this.getStep(this._current))&&t.duration?(this._paused=!0,this._duration-=(new Date).getTime()-this._start,e.clearTimeout(this._timer),this._debug("Paused/Stopped step "+(this._current+1)+" timer ("+this._duration+" remaining)."),null!=t.onPause?t.onPause(this,this._duration):void 0):this},i.prototype.resume=function(){var t;return(t=this.getStep(this._current))&&t.duration?(this._paused=!1,this._start=(new Date).getTime(),this._duration=this._duration||t.duration,this._timer=e.setTimeout(function(t){return function(){return t._isLast()?t.next():t.end()}}(this),this._duration),this._debug("Started step "+(this._current+1)+" timer with duration "+this._duration),null!=t.onResume&&this._duration!==t.duration?t.onResume(this,this._duration):void 0):this},i.prototype.hideStep=function(e){var i,n,r;if(r=this.getStep(e))return this._clearTimer(),n=this._makePromise(null!=r.onHide?r.onHide(this,e):void 0),i=function(i){return function(n){var a;if(a=t(r.element),a.data("bs.popover")||a.data("popover")||(a=t("body")),a.popover("destroy").removeClass("tour-"+i._options.name+"-element tour-"+i._options.name+"-"+e+"-element"),a.removeData("bs.popover"),r.reflex&&t(r.reflexElement).removeClass("tour-step-element-reflex").off(i._reflexEvent(r.reflex)+".tour-"+i._options.name),r.backdrop&&i._hideBackdrop(),null!=r.onHidden)return r.onHidden(i)}}(this),this._callOnPromiseDone(n,i),n},i.prototype.showStep=function(t){var i,r,a,o;return this.ended()?(this._debug("Tour ended, showStep prevented."),this):(o=this.getStep(t))?(a=t<this._current,i=this._makePromise(null!=o.onShow?o.onShow(this,t):void 0),r=function(e){return function(i){var r,s;if(e.setCurrentStep(t),r=function(){switch({}.toString.call(o.path)){case"[object Function]":return o.path();case"[object String]":return this._options.basePath+o.path;default:return o.path}}.call(e),!e._isRedirect(o.host,r,n.location)||(e._redirect(o,t,r),e._isJustPathHashDifferent(o.host,r,n.location))){if(e._isOrphan(o)){if(!1===o.orphan)return e._debug("Skip the orphan step "+(e._current+1)+".\nOrphan option is false and the element does not exist or is hidden."),void(a?e._showPrevStep():e._showNextStep());e._debug("Show the orphan step "+(e._current+1)+". Orphans option is true.")}return o.backdrop&&e._showBackdrop(o),s=function(){if(e.getCurrentStep()===t&&!e.ended())return null!=o.element&&o.backdrop&&e._showOverlayElement(o),e._showPopover(o,t),null!=o.onShown&&o.onShown(e),e._debug("Step "+(e._current+1)+" of "+e._options.steps.length)},o.autoscroll?e._scrollIntoView(o.element,s):s(),o.duration?e.resume():void 0}}}(this),o.delay?(this._debug("Wait "+o.delay+" milliseconds to show the step "+(this._current+1)),e.setTimeout(function(t){return function(){return t._callOnPromiseDone(i,r)}}(this),o.delay)):this._callOnPromiseDone(i,r),i):void 0},i.prototype.getCurrentStep=function(){return this._current},i.prototype.setCurrentStep=function(t){return null!=t?(this._current=t,this._setState("current_step",t)):(this._current=this._getState("current_step"),this._current=null===this._current?null:parseInt(this._current,10)),this},i.prototype.redraw=function(){return this._showOverlayElement(this.getStep(this.getCurrentStep()).element,!0)},i.prototype._setState=function(t,e){var i,n;if(this._options.storage){n=this._options.name+"_"+t;try{this._options.storage.setItem(n,e)}catch(t){i=t,i.code===DOMException.QUOTA_EXCEEDED_ERR&&this._debug("LocalStorage quota exceeded. State storage failed.")}return this._options.afterSetState(n,e)}return null==this._state&&(this._state={}),this._state[t]=e},i.prototype._removeState=function(t){var e;return this._options.storage?(e=this._options.name+"_"+t,this._options.storage.removeItem(e),this._options.afterRemoveState(e)):null!=this._state?delete this._state[t]:void 0},i.prototype._getState=function(t){var e,i;return this._options.storage?(e=this._options.name+"_"+t,i=this._options.storage.getItem(e)):null!=this._state&&(i=this._state[t]),void 0!==i&&"null"!==i||(i=null),this._options.afterGetState(t,i),i},i.prototype._showNextStep=function(){var t,e,i;return i=this.getStep(this._current),e=function(t){return function(e){return t.showStep(i.next)}}(this),t=this._makePromise(null!=i.onNext?i.onNext(this):void 0),this._callOnPromiseDone(t,e)},i.prototype._showPrevStep=function(){var t,e,i;return i=this.getStep(this._current),e=function(t){return function(e){return t.showStep(i.prev)}}(this),t=this._makePromise(null!=i.onPrev?i.onPrev(this):void 0),this._callOnPromiseDone(t,e)},i.prototype._debug=function(t){if(this._options.debug)return e.console.log("Bootstrap Tour '"+this._options.name+"' | "+t)},i.prototype._isRedirect=function(t,e,i){var n;return!(""===t||!this._isHostDifferent(t,i.href))||(n=[i.pathname,i.search,i.hash].join(""),null!=e&&""!==e&&("[object RegExp]"==={}.toString.call(e)&&!e.test(n)||"[object String]"==={}.toString.call(e)&&this._isPathDifferent(e,n)))},i.prototype._isHostDifferent=function(t,e){return this._getProtocol(t)!==this._getProtocol(e)||this._getHost(t)!==this._getHost(e)},i.prototype._isPathDifferent=function(t,e){return this._getPath(t)!==this._getPath(e)||!this._equal(this._getQuery(t),this._getQuery(e))||!this._equal(this._getHash(t),this._getHash(e))},i.prototype._isJustPathHashDifferent=function(t,e,i){var n;return(""===t||!this._isHostDifferent(t,i.href))&&(n=[i.pathname,i.search,i.hash].join(""),"[object String]"==={}.toString.call(e)&&(this._getPath(e)===this._getPath(n)&&this._equal(this._getQuery(e),this._getQuery(n))&&!this._equal(this._getHash(e),this._getHash(n))))},i.prototype._redirect=function(e,i,r){if(t.isFunction(e.redirect))return e.redirect.call(this,r);if(!0===e.redirect){if(this._debug("Redirect to "+e.host+r),this._getState("redirect_to")!==""+i)return this._setState("redirect_to",""+i),n.location.href=""+e.host+r;if(this._debug("Error redirection loop to "+r),this._removeState("redirect_to"),null!=e.onRedirectError)return e.onRedirectError(this)}},i.prototype._isOrphan=function(e){return null==e.element||!t(e.element).length||t(e.element).is(":hidden")&&"http://www.w3.org/2000/svg"!==t(e.element)[0].namespaceURI},i.prototype._isLast=function(){return this._current<this._options.steps.length-1},i.prototype._showPopover=function(e,i){var n,r,a,o,s;if(t(".tour-"+this._options.name).remove(),o=t.extend({},this._options),a=this._isOrphan(e),e.template=this._template(e,i),a&&(e.element="body",e.placement="top"),n=t(e.element),n.addClass("tour-"+this._options.name+"-element tour-"+this._options.name+"-"+i+"-element"),e.options&&t.extend(o,e.options),e.reflex&&!a&&t(e.reflexElement).addClass("tour-step-element-reflex").off(this._reflexEvent(e.reflex)+".tour-"+this._options.name).on(this._reflexEvent(e.reflex)+".tour-"+this._options.name,function(t){return function(){return t._isLast()?t.next():t.end()}}(this)),s=!0===e.smartPlacement&&-1===e.placement.search(/auto/i),n.popover({placement:s?"auto "+e.placement:e.placement,trigger:"manual",title:e.title,content:e.content,html:!0,animation:e.animation,container:e.container,template:e.template,selector:e.element}).popover("show"),r=n.data("bs.popover")?n.data("bs.popover").tip():n.data("popover").tip(),r.attr("id",e.id),this._reposition(r,e),a)return this._center(r)},i.prototype._template=function(e,i){var n,r,a,o,s,l;return l=e.template,this._isOrphan(e)&&"[object Boolean]"!=={}.toString.call(e.orphan)&&(l=e.orphan),s=t(t.isFunction(l)?l(i,e):l),n=s.find(".popover-navigation"),a=n.find('[data-role="prev"]'),r=n.find('[data-role="next"]'),o=n.find('[data-role="pause-resume"]'),this._isOrphan(e)&&s.addClass("orphan"),s.addClass("tour-"+this._options.name+" tour-"+this._options.name+"-"+i),e.reflex&&s.addClass("tour-"+this._options.name+"-reflex"),e.prev<0&&(a.addClass("disabled"),a.prop("disabled",!0)),e.next<0&&(r.addClass("disabled"),r.prop("disabled",!0)),e.duration||o.remove(),s.clone().wrap("<div>").parent().html()},i.prototype._reflexEvent=function(t){return"[object Boolean]"==={}.toString.call(t)?"click":t},i.prototype._reposition=function(e,i){var r,a,o,s,l,c,u;if(s=e[0].offsetWidth,a=e[0].offsetHeight,u=e.offset(),l=u.left,c=u.top,r=t(n).outerHeight()-u.top-e.outerHeight(),r<0&&(u.top=u.top+r),o=t("html").outerWidth()-u.left-e.outerWidth(),o<0&&(u.left=u.left+o),u.top<0&&(u.top=0),u.left<0&&(u.left=0),e.offset(u),"bottom"===i.placement||"top"===i.placement){if(l!==u.left)return this._replaceArrow(e,2*(u.left-l),s,"left")}else if(c!==u.top)return this._replaceArrow(e,2*(u.top-c),a,"top")},i.prototype._center=function(i){return i.css("top",t(e).outerHeight()/2-i.outerHeight()/2)},i.prototype._replaceArrow=function(t,e,i,n){return t.find(".arrow").css(n,e?50*(1-e/i)+"%":"")},i.prototype._scrollIntoView=function(i,n){var r,a,o,s,l,c;return r=t(i),r.length?(a=t(e),s=r.offset().top,c=a.height(),l=Math.max(0,s-c/2),this._debug("Scroll into view. ScrollTop: "+l+". Element offset: "+s+". Window height: "+c+"."),o=0,t("body, html").stop(!0,!0).animate({scrollTop:Math.ceil(l)},function(t){return function(){if(2==++o)return n(),t._debug("Scroll into view.\nAnimation end element offset: "+r.offset().top+".\nWindow height: "+a.height()+".")}}(this))):n()},i.prototype._onResize=function(i,n){return t(e).on("resize.tour-"+this._options.name,function(){return clearTimeout(n),n=setTimeout(i,100)})},i.prototype._initMouseNavigation=function(){var e;return e=this,t(n).off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='prev']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='next']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='end']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='pause-resume']").on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='next']",function(t){return function(e){return e.preventDefault(),t.next()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='prev']",function(t){return function(e){return e.preventDefault(),t.prev()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='end']",function(t){return function(e){return e.preventDefault(),t.end()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='pause-resume']",function(i){var n;return i.preventDefault(),n=t(this),n.text(e._paused?n.data("pause-text"):n.data("resume-text")),e._paused?e.resume():e.pause()})},i.prototype._initKeyboardNavigation=function(){if(this._options.keyboard)return t(n).on("keyup.tour-"+this._options.name,function(t){return function(e){if(e.which)switch(e.which){case 39:return e.preventDefault(),t._isLast()?t.next():t.end();case 37:if(e.preventDefault(),t._current>0)return t.prev();break;case 27:return e.preventDefault(),t.end()}}}(this))},i.prototype._makePromise=function(e){return e&&t.isFunction(e.then)?e:null},i.prototype._callOnPromiseDone=function(t,e,i){return t?t.then(function(t){return function(n){return e.call(t,i)}}(this)):e.call(this,i)},i.prototype._showBackdrop=function(e){if(!this.backdrop.backgroundShown)return this.backdrop=t("<div>",{class:"tour-backdrop"}),this.backdrop.backgroundShown=!0,t(e.backdropContainer).append(this.backdrop)},i.prototype._hideBackdrop=function(){return this._hideOverlayElement(),this._hideBackground()},i.prototype._hideBackground=function(){if(this.backdrop)return this.backdrop.remove(),this.backdrop.overlay=null,this.backdrop.backgroundShown=!1},i.prototype._showOverlayElement=function(e,i){var n,r;if((n=t(e.element))&&0!==n.length&&(!this.backdrop.overlayElementShown||i))return this.backdrop.overlayElementShown||(this.backdrop.$element=n.addClass("tour-step-backdrop"),this.backdrop.$background=t("<div>",{class:"tour-step-background"}),this.backdrop.$background.appendTo(e.backdropContainer),this.backdrop.overlayElementShown=!0),r={width:n.innerWidth(),height:n.innerHeight(),offset:n.offset()},e.backdropPadding&&(r=this._applyBackdropPadding(e.backdropPadding,r)),this.backdrop.$background.width(r.width).height(r.height).offset(r.offset)},i.prototype._hideOverlayElement=function(){if(this.backdrop.overlayElementShown)return this.backdrop.$element.removeClass("tour-step-backdrop"),this.backdrop.$background.remove(),this.backdrop.$element=null,this.backdrop.$background=null,this.backdrop.overlayElementShown=!1},i.prototype._applyBackdropPadding=function(t,e){return"object"==typeof t?(null==t.top&&(t.top=0),null==t.right&&(t.right=0),null==t.bottom&&(t.bottom=0),null==t.left&&(t.left=0),e.offset.top=e.offset.top-t.top,e.offset.left=e.offset.left-t.left,e.width=e.width+t.left+t.right,e.height=e.height+t.top+t.bottom):(e.offset.top=e.offset.top-t,e.offset.left=e.offset.left-t,e.width=e.width+2*t,e.height=e.height+2*t),e},i.prototype._clearTimer=function(){return e.clearTimeout(this._timer),this._timer=null,this._duration=null},i.prototype._getProtocol=function(t){return t=t.split("://"),t.length>1?t[0]:"http"},i.prototype._getHost=function(t){return t=t.split("//"),t=t.length>1?t[1]:t[0],t.split("/")[0]},i.prototype._getPath=function(t){return t.replace(/\/?$/,"").split("?")[0].split("#")[0]},i.prototype._getQuery=function(t){return this._getParams(t,"?")},i.prototype._getHash=function(t){return this._getParams(t,"#")},i.prototype._getParams=function(t,e){var i,n,r,a,o;if(n=t.split(e),1===n.length)return{};for(n=n[1].split("&"),r={},a=0,o=n.length;a<o;a++)i=n[a],i=i.split("="),r[i[0]]=i[1]||"";return r},i.prototype._equal=function(t,e){var i,n;if("[object Object]"==={}.toString.call(t)&&"[object Object]"==={}.toString.call(e)){for(i in t)if(n=t[i],e[i]!==n)return!1;for(i in e)if(n=e[i],t[i]!==n)return!1;return!0}return t===e},i}(),e.Tour=i}(t,window)}).call(e,i(0))},function(t,e){var i;i=function(){return this}();try{i=i||Function("return this")()||(0,eval)("this")}catch(t){"object"==typeof window&&(i=window)}t.exports=i},function(t,e,i){"use strict";(function(t){function n(t,e){o(t).find(".tag-name").each(function(){o(this).click(function(){var t=o(this).text(),i=t.split(":");return e(i[0],i[1]),!0})})}Object.defineProperty(e,"__esModule",{value:!0});var r=i(0),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=a.default;a.default.fn.autocomplete_tagging=function(e){function 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x=w.extend({initialize:function(t){_.default.cssLoadFile("static/style/jquery.rating.css"),_.default.cssLoadFile("static/style/autocomplete_tagging.css"),_.default.cssLoadFile("static/style/jquery-ui/smoothness/jquery-ui.css"),_.default.cssLoadFile("static/style/library.css"),_.default.cssLoadFile("static/style/trackster.css"),this.baseURL=t},save_viz:function(){Galaxy.modal.show({title:"Saving...",body:"progress"});var t=[];n(".bookmark").each(function(){t.push({position:n(this).children(".position").text(),annotation:n(this).children(".annotation").text()})});var e=b.overview_drawable?b.overview_drawable.config.get_value("name"):null,i={view:b.to_dict(),viewport:{chrom:b.chrom,start:b.low,end:b.high,overview:e},bookmarks:t};return n.ajax({url:Galaxy.root+"visualization/save",type:"POST",dataType:"json",data:{id:b.vis_id,title:b.config.get_value("name"),dbkey:b.dbkey,type:"trackster",vis_json:JSON.stringify(i)}}).success(function(t){Galaxy.modal.hide(),b.vis_id=t.vis_id,b.has_changes=!1,window.history.pushState({},"",t.url+window.location.hash)}).error(function(){Galaxy.modal.show({title:"Could Not Save",body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})},createButtonMenu:function(){var t=this,e=d.default.create_icon_buttons_menu([{icon_class:"plus-button",title:"Add tracks",on_click:function(){u.default.select_datasets({dbkey:b.dbkey},function(t){o.each(t,function(t){b.add_drawable(l.default.object_from_template(t,b,b))})})}},{icon_class:"block--plus",title:"Add group",on_click:function(){b.add_drawable(new l.default.DrawableGroup(b,b,{name:"New Group"}))}},{icon_class:"bookmarks",title:"Bookmarks",on_click:function(){force_right_panel("0px"==n("div#right").css("right")?"hide":"show")}},{icon_class:"globe",title:"Circster",on_click:function(){window.location=t.baseURL+"visualization/circster?id="+b.vis_id}},{icon_class:"disk--arrow",title:"Save",on_click:function(){t.save_viz()}},{icon_class:"cross-circle",title:"Close",on_click:function(){t.handle_unsaved_changes(b)}}],{tooltip_config:{placement:"bottom"}});return this.buttonMenu=e,e},add_bookmark:function(t,e,i){var r=n("#right .unified-panel-body"),a=n("<div/>").addClass("bookmark").appendTo(r),o=n("<div/>").addClass("position").appendTo(a),s=(n("<a href=''/>").text(t).appendTo(o).click(function(){return b.go_to(t),!1}),n("<div/>").text(e).appendTo(a));if(i){var l=n("<div/>").addClass("delete-icon-container").prependTo(a).click(function(){return a.slideUp("fast"),a.remove(),b.has_changes=!0,!1});n("<a href=''/>").addClass("icon-button delete").appendTo(l);s.make_text_editable({num_rows:3,use_textarea:!0,help_text:"Edit bookmark note"}).addClass("annotation")}return b.has_changes=!0,a},create_visualization:function(t,e,i,r,a){var s=this,c=new l.default.TracksterView(o.extend(t,{header:!1}));return c.editor=!0,n.when(c.load_chroms_deferred).then(function(t){if(e){var n=e.chrom,o=e.start,u=e.end,h=e.overview;n&&void 0!==o&&u?c.change_chrom(n,o,u):c.change_chrom(t[0].chrom)}else c.change_chrom(t[0].chrom);if(i)for(var d=0;d<i.length;d++)c.add_drawable(l.default.object_from_template(i[d],c,c));for(var d=0;d<c.drawables.length;d++)if(c.drawables[d].config.get_value("name")===h){c.set_overview(c.drawables[d]);break}if(r)for(var f,d=0;d<r.length;d++)f=r[d],s.add_bookmark(f.position,f.annotation,a);c.has_changes=!1}),this.set_up_router({view:c}),c},set_up_router:function(e){new u.default.TrackBrowserRouter(e),t.history.start()},init_keyboard_nav:function(t){n(document).keyup(function(e){if(!n(e.srcElement).is(":input"))switch(e.which){case 37:t.move_fraction(.25);break;case 38:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()-20);break;case 39:t.move_fraction(-.25);break;case 40:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()+20)}})},handle_unsaved_changes:function(t){if(t.has_changes){var e=this;Galaxy.modal.show({title:"Close visualization",body:"There are unsaved changes to your visualization which will be lost if you do not save them.",buttons:{Cancel:function(){Galaxy.modal.hide()},"Leave without Saving":function(){n(window).off("beforeunload"),window.location=Galaxy.root+"visualization"},Save:function(){n.when(e.save_viz()).then(function(){window.location=Galaxy.root+"visualization"})}}})}else window.location=Galaxy.root+"visualization"}}),k=t.View.extend({initialize:function(){y=new x(Galaxy.root),y.createButtonMenu(),y.buttonMenu.$el.attr("style","float: right"),n("#center .unified-panel-header-inner").append(y.buttonMenu.$el),n("#right .unified-panel-title").append("Bookmarks"),n("#right .unified-panel-icons").append("<a id='add-bookmark-button' class='icon-button menu-button plus-button' href='javascript:void(0);' title='Add bookmark'></a>"),n("#right-border").click(function(){b.resize_window()}),force_right_panel("hide"),galaxy_config.app.id?this.view_existing():p.default.get("dataset_id")?this.choose_existing_or_new():this.view_new()},choose_existing_or_new:function(){var t=this,e=p.default.get("dbkey"),i={},n={dbkey:e,dataset_id:p.default.get("dataset_id"),hda_ldda:p.default.get("hda_ldda"),gene_region:p.default.get("gene_region")};e&&(i["f-dbkey"]=e),Galaxy.modal.show({title:"View Data in a New or Saved Visualization?",body:"<p><ul style='list-style: disc inside none'>You can add this dataset as:<li>a new track to one of your existing, saved Trackster sessions if they share the genome build: <b>"+(e||"Not available.")+"</b></li><li>or create a new session with this dataset as the only track</li></ul></p>",buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"View in saved visualization":function(){t.view_in_saved(n)},"View in new 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Visualization",body:t.template_view_new(e),buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},Create:function(){t.create_browser(n("#new-title").val(),n("#new-dbkey").val()),Galaxy.modal.hide()}}});var i=e.map(function(t){return t[1]});galaxy_config.app.default_dbkey&&o.contains(i,galaxy_config.app.default_dbkey)&&n("#new-dbkey").val(galaxy_config.app.default_dbkey),n("#new-title").focus(),n("select[name='dbkey']").select2(),n("#overlay").css("overflow","auto")}})},template_view_new:function(t){for(var e='<form id="new-browser-form" action="javascript:void(0);" method="post" onsubmit="return false;"><div class="form-row"><label for="new-title">Browser name:</label><div class="form-row-input"><input type="text" name="title" id="new-title" value="Unnamed"></input></div><div style="clear: both;"></div></div><div class="form-row"><label for="new-dbkey">Reference genome build (dbkey): </label><div class="form-row-input"><select name="dbkey" id="new-dbkey">',i=0;i<t.length;i++)e+='<option value="'+t[i][1]+'">'+t[i][0]+"</option>";return e+='</select></div><div style="clear: both;"></div></div><div class="form-row">Is the build not listed here? <a href="'+Galaxy.root+'custom_builds">Add a Custom Build</a></div></form>'},create_browser:function(t,e){n(document).trigger("convert_to_values"),b=y.create_visualization({container:n("#center .unified-panel-body"),name:t,dbkey:e},galaxy_config.app.gene_region),this.init_editor(),b.editor=!0},init_editor:function(){n("#center .unified-panel-title").text(b.config.get_value("name")+" ("+b.dbkey+")"),galaxy_config.app.add_dataset&&n.ajax({url:Galaxy.root+"api/datasets/"+galaxy_config.app.add_dataset,data:{hda_ldda:"hda",data_type:"track_config"},dataType:"json",success:function(t){b.add_drawable(l.default.object_from_template(t,b,b))}}),n("#add-bookmark-button").click(function(){var t=b.chrom+":"+b.low+"-"+b.high;return y.add_bookmark(t,"Bookmark description",!0)}),y.init_keyboard_nav(b),n(window).on("beforeunload",function(){if(b.has_changes)return"There are unsaved changes to your visualization that will be lost if you leave this page."})}});e.default={TracksterUI:x,GalaxyApp:k}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(1),o=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=i(36),l=r(s),c=i(35),u=r(c),h=i(86),d=(r(h),{hidden:!1,show:function(){this.set("hidden",!1)},hide:function(){this.set("hidden",!0)},toggle:function(){this.set("hidden",!this.get("hidden"))},is_visible:function(){return!this.attributes.hidden}}),f=t.Model.extend({defaults:{name:null,label:null,type:null,value:null,html:null,num_samples:5},initialize:function(t){this.attributes.html=unescape(this.attributes.html)},copy:function(){return new f(this.toJSON())},set_value:function(t){this.set("value",t||"")}}),p=t.Collection.extend({model:f}),m=f.extend({}),v=f.extend({set_value:function(t){this.set("value",parseInt(t,10))},get_samples:function(){return d3.scale.linear().domain([this.get("min"),this.get("max")]).ticks(this.get("num_samples"))}}),g=v.extend({set_value:function(t){this.set("value",parseFloat(t))}}),_=f.extend({get_samples:function(){return o.map(this.get("options"),function(t){return t[0]})}});f.subModelTypes={integer:v,float:g,data:m,select:_};var y=t.Model.extend({defaults:{id:null,name:null,description:null,target:null,inputs:[],outputs:[]},urlRoot:Galaxy.root+"api/tools",initialize:function(t){this.set("inputs",new p(o.map(t.inputs,function(t){return new(f.subModelTypes[t.type]||f)(t)})))},toJSON:function(){var e=t.Model.prototype.toJSON.call(this);return e.inputs=this.get("inputs").map(function(t){return t.toJSON()}),e},remove_inputs:function(t){var e=this,i=e.get("inputs").filter(function(e){return-1!==t.indexOf(e.get("type"))});e.get("inputs").remove(i)},copy:function(e){var i=new y(this.toJSON());if(e){var n=new t.Collection;i.get("inputs").each(function(t){t.get_samples()&&n.push(t)}),i.set("inputs",n)}return i},apply_search_results:function(t){return-1!==o.indexOf(t,this.attributes.id)?this.show():this.hide(),this.is_visible()},set_input_value:function(t,e){this.get("inputs").find(function(e){return e.get("name")===t}).set("value",e)},set_input_values:function(t){var e=this;o.each(o.keys(t),function(i){e.set_input_value(i,t[i])})},run:function(){return this._run()},rerun:function(t,e){return this._run({action:"rerun",target_dataset_id:t.id,regions:e})},get_inputs_dict:function(){var t={};return this.get("inputs").each(function(e){t[e.get("name")]=e.get("value")}),t},_run:function(t){var e=o.extend({tool_id:this.id,inputs:this.get_inputs_dict()},t),i=n.Deferred(),r=new l.default.ServerStateDeferred({ajax_settings:{url:this.urlRoot,data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});return n.when(r.go()).then(function(t){i.resolve(new u.default.DatasetCollection(t))}),i}});o.extend(y.prototype,d);var b=(t.View.extend({}),t.Collection.extend({model:y})),w=t.Model.extend(d),x=t.Model.extend({defaults:{elems:[],open:!1},clear_search_results:function(){o.each(this.attributes.elems,function(t){t.show()}),this.show(),this.set("open",!1)},apply_search_results:function(t){var e,i=!0;o.each(this.attributes.elems,function(n){n instanceof w?(e=n,e.hide()):n instanceof y&&n.apply_search_results(t)&&(i=!1,e&&e.show())}),i?this.hide():(this.show(),this.set("open",!0))}});o.extend(x.prototype,d);var k=t.Model.extend({defaults:{search_hint_string:"search tools",min_chars_for_search:3,clear_btn_url:"",visible:!0,query:"",results:null,clear_key:27},urlRoot:Galaxy.root+"api/tools",initialize:function(){this.on("change:query",this.do_search)},do_search:function(){var t=this.attributes.query;if(t.length<this.attributes.min_chars_for_search)return void this.set("results",null);var e=t;this.timer&&clearTimeout(this.timer),n("#search-clear-btn").hide(),n("#search-spinner").show();var i=this;this.timer=setTimeout(function(){"undefined"!=typeof ga&&ga("send","pageview",Galaxy.root+"?q="+e),n.get(i.urlRoot,{q:e},function(t){i.set("results",t),n("#search-spinner").hide(),n("#search-clear-btn").show()},"json")},400)},clear_search:function(){this.set("query",""),this.set("results",null)}});o.extend(k.prototype,d);var C=t.Model.extend({initialize:function(e){this.attributes.tool_search=e.tool_search,this.attributes.tool_search.on("change:results",this.apply_search_results,this),this.attributes.tools=e.tools,this.attributes.layout=new t.Collection(this.parse(e.layout))},parse:function(t){var e=this,i=function t(i){var n=i.model_class;if(n.indexOf("Tool")===n.length-4)return e.attributes.tools.get(i.id);if("ToolSection"===n){var r=o.map(i.elems,t);return i.elems=r,new x(i)}return"ToolSectionLabel"===n?new w(i):void 0};return o.map(t,i)},clear_search_results:function(){this.get("layout").each(function(t){t instanceof x?t.clear_search_results():t.show()})},apply_search_results:function(){var t=this.get("tool_search").get("results");if(null===t)return void this.clear_search_results();var e=null;this.get("layout").each(function(i){i instanceof w?(e=i,e.hide()):i instanceof y?i.apply_search_results(t)&&e&&e.show():(e=null,i.apply_search_results(t))})}}),S=t.View.extend({initialize:function(){this.model.on("change:hidden",this.update_visible,this),this.update_visible()},update_visible:function(){this.model.attributes.hidden?this.$el.hide():this.$el.show()}}),T=S.extend({tagName:"div",render:function(){var t=n("<div/>");t.append(j.tool_link(this.model.toJSON()));var e=this.model.get("form_style",null);if("upload1"===this.model.id)t.find("a").on("click",function(t){t.preventDefault(),Galaxy.upload.show()});else if("regular"===e){var i=this;t.find("a").on("click",function(t){t.preventDefault(),Galaxy.router.push("/",{tool_id:i.model.id,version:i.model.get("version")})})}return this.$el.append(t),this}}),A=S.extend({tagName:"div",className:"toolPanelLabel",render:function(){return this.$el.append(n("<span/>").text(this.model.attributes.text)),this}}),M=S.extend({tagName:"div",className:"toolSectionWrapper",initialize:function(){S.prototype.initialize.call(this),this.model.on("change:open",this.update_open,this)},render:function(){this.$el.append(j.panel_section(this.model.toJSON()));var t=this.$el.find(".toolSectionBody");return o.each(this.model.attributes.elems,function(e){if(e instanceof y){var i=new T({model:e,className:"toolTitle"});i.render(),t.append(i.$el)}else if(e instanceof w){var n=new A({model:e});n.render(),t.append(n.$el)}}),this},events:{"click .toolSectionTitle > a":"toggle"},toggle:function(){this.model.set("open",!this.model.attributes.open)},update_open:function(){this.model.attributes.open?this.$el.children(".toolSectionBody").slideDown("fast"):this.$el.children(".toolSectionBody").slideUp("fast")}}),E=t.View.extend({tagName:"div",id:"tool-search",className:"bar",events:{click:"focus_and_select","keyup :input":"query_changed","change :input":"query_changed","click #search-clear-btn":"clear"},render:function(){return this.$el.append(j.tool_search(this.model.toJSON())),this.model.is_visible()||this.$el.hide(),n("#messagebox").is(":visible")&&this.$el.css("top","95px"),this.$el.find("[title]").tooltip(),this},focus_and_select:function(){this.$el.find(":input").focus().select()},clear:function(){return this.model.clear_search(),this.$el.find(":input").val(""),this.focus_and_select(),!1},query_changed:function(t){if(this.model.attributes.clear_key&&this.model.attributes.clear_key===t.which)return this.clear(),!1;this.model.set("query",this.$el.find(":input").val())}}),O=t.View.extend({tagName:"div",className:"toolMenu",initialize:function(){this.model.get("tool_search").on("change:results",this.handle_search_results,this)},render:function(){var t=this,e=new E({model:this.model.get("tool_search")});return e.render(),t.$el.append(e.$el),this.model.get("layout").each(function(e){if(e instanceof x){var i=new M({model:e});i.render(),t.$el.append(i.$el)}else if(e instanceof y){var n=new T({model:e,className:"toolTitleNoSection"});n.render(),t.$el.append(n.$el)}else if(e instanceof w){var r=new A({model:e});r.render(),t.$el.append(r.$el)}}),t.$el.find("a.tool-link").click(function(e){var i=n(this).attr("class").split(/\s+/)[0],r=t.model.get("tools").get(i);t.trigger("tool_link_click",e,r)}),this},handle_search_results:function(){var t=this.model.get("tool_search").get("results");t&&0===t.length?n("#search-no-results").show():n("#search-no-results").hide()}}),$=t.View.extend({className:"toolForm",render:function(){this.$el.children().remove(),this.$el.append(j.tool_form(this.model.toJSON()))}}),j=(t.View.extend({className:"toolMenuAndView",initialize:function(){this.tool_panel_view=new O({collection:this.collection}),this.tool_form_view=new $},render:function(){this.tool_panel_view.render(),this.tool_panel_view.$el.css("float","left"),this.$el.append(this.tool_panel_view.$el),this.tool_form_view.$el.hide(),this.$el.append(this.tool_form_view.$el);var t=this;this.tool_panel_view.on("tool_link_click",function(e,i){e.preventDefault(),t.show_tool(i)})},show_tool:function(t){var e=this;t.fetch().done(function(){e.tool_form_view.model=t,e.tool_form_view.render(),e.tool_form_view.$el.show(),n("#left").width("650px")})}}),{tool_search:o.template(['<input id="tool-search-query" class="search-query parent-width" name="query" ','placeholder="<%- search_hint_string %>" autocomplete="off" type="text" />','<a id="search-clear-btn" title="clear search (esc)"> </a>','<span id="search-spinner" class="search-spinner fa fa-spinner fa-spin"></span>'].join("")),panel_section:o.template(['<div class="toolSectionTitle" id="title_<%- id %>">','<a href="javascript:void(0)"><span><%- name %></span></a>',"</div>",'<div id="<%- id %>" class="toolSectionBody" style="display: none;">','<div class="toolSectionBg"></div>',"<div>"].join("")),tool_link:o.template(['<a class="<%- id %> tool-link" href="<%= link %>" target="<%- target %>" minsizehint="<%- min_width %>">','<span class="labels">',"<% _.each( labels, function( label ){ %>",'<span class="label label-default label-<%- label %>">',"<%- label %>","</span>","<% }); %>","</span>",'<span class="tool-old-link">',"<%- name %>","</span>"," <%- description %>","</a>"].join("")),tool_form:o.template(['<div class="toolFormTitle"><%- tool.name %> (version <%- tool.version %>)</div>','<div class="toolFormBody">',"<% _.each( tool.inputs, function( input ){ %>",'<div class="form-row">','<label for="<%- input.name %>"><%- input.label %>:</label>','<div class="form-row-input">',"<%= input.html %>","</div>",'<div class="toolParamHelp" style="clear: both;">',"<%- input.help %>","</div>",'<div style="clear: both;"></div>',"</div>","<% }); %>","</div>",'<div class="form-row form-actions">','<input type="submit" class="btn btn-primary" name="runtool_btn" value="Execute" />',"</div>",'<div class="toolHelp">','<div class="toolHelpBody"><% tool.help %></div>',"</div>"].join(""),{variable:"tool"})});e.default={ToolParameter:f,IntegerToolParameter:v,SelectToolParameter:_,Tool:y,ToolCollection:b,ToolSearch:k,ToolPanel:C,ToolPanelView:O,ToolFormView:$}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(6),c=a(l),u=i(8),h=a(u),d=i(45),f=a(d),p=i(34),m=a(p),v=t.View.extend({initialize:function(t){var e=this;this.modal=parent.Galaxy.modal||new h.default.View,this.form=new f.default(s.default.merge({listen_to_history:!0,always_refresh:!1,buildmodel:function(t,i){var r=i.model.attributes,a="",o={},l=r.job_id;l?a=Galaxy.root+"api/jobs/"+l+"/build_for_rerun":(a=Galaxy.root+"api/tools/"+r.id+"/build",o=n.extend({},Galaxy.params),o.tool_id&&delete o.tool_id),r.version&&(o.tool_version=r.version),s.default.get({url:a,data:o,success:function(n){if(!n.display)return void(window.location=Galaxy.root);i.model.set(n),e._customize(i),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model ready.",n),t.resolve()},error:function(e,a){var o=e&&e.err_msg||"Uncaught error.";401==a?window.location=Galaxy.root+"user/login?"+n.param({redirect:Galaxy.root+"?tool_id="+r.id}):i.$el.is(":empty")?i.$el.prepend(new c.default.Message({message:o,status:"danger",persistent:!0,large:!0}).$el):Galaxy.modal&&Galaxy.modal.show({title:"Tool request failed",body:o,buttons:{Close:function(){Galaxy.modal.hide()}}}),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model request failed.",e),t.reject()}})},postchange:function(t,e){var i={tool_id:e.model.get("id"),tool_version:e.model.get("version"),inputs:n.extend(!0,{},e.data.create())};e.wait(!0),Galaxy.emit.debug("tool-form::postchange()","Sending current state.",i),s.default.request({type:"POST",url:Galaxy.root+"api/tools/"+e.model.get("id")+"/build",data:i,success:function(i){e.update(i),e.wait(!1),Galaxy.emit.debug("tool-form::postchange()","Received new model.",i),t.resolve()},error:function(e){Galaxy.emit.debug("tool-form::postchange()","Refresh request failed.",e),t.reject()}})}},t)),this.deferred=this.form.deferred,this.setElement("<div/>"),this.$el.append(this.form.$el)},_customize:function(t){var e=this,i=t.model.attributes,n=new c.default.Button({icon:"fa-check",tooltip:"Execute: "+i.name+" ("+i.version+")",title:"Execute",cls:"btn btn-primary ui-clear-float",wait_cls:"btn btn-info ui-clear-float",onclick:function(){n.wait(),t.portlet.disable(),e.submit(i,function(){n.unwait(),t.portlet.enable()})}});i.buttons={execute:n},i.job_id&&i.job_remap&&i.inputs.push({label:"Resume dependencies from this job",name:"rerun_remap_job_id",type:"select",display:"radio",ignore:"__ignore__",value:"__ignore__",options:[["Yes",i.job_id],["No","__ignore__"]],help:"The previous run of this tool failed and other tools were waiting for it to finish successfully. Use this option to resume those tools using the new output(s) of this tool run."})},submit:function(t,e){var i=this,a={tool_id:t.id,tool_version:t.version,inputs:this.form.data.create()};if(this.form.trigger("reset"),!i.validate(a))return Galaxy.emit.debug("tool-form::submit()","Submission canceled. Validation failed."),void(e&&e());if(t.action!==Galaxy.root+"tool_runner/index"){var o=n("<form/>").attr({action:t.action,method:t.method,enctype:t.enctype});return r.each(a.inputs,function(t,e){o.append(n("<input/>").attr({name:e,value:t}))}),o.hide().appendTo("body").submit().remove(),void(e&&e())}Galaxy.emit.debug("tool-form::submit()","Validation complete.",a),s.default.request({type:"POST",url:Galaxy.root+"api/tools",data:a,success:function(t){if(e&&e(),i.$el.children().hide(),i.$el.append(i._templateSuccess(t)),t.jobs&&t.jobs.length>0){i.$el.append(n("<div/>",{id:"webhook-view"}));new m.default.WebhookView({urlRoot:Galaxy.root+"api/webhooks/tool",toolId:a.tool_id})}parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents()},error:function(t){e&&e(),Galaxy.emit.debug("tool-form::submit","Submission failed.",t);var n=!1;if(t&&t.err_data){var r=i.form.data.matchResponse(t.err_data);for(var o in r){i.form.highlight(o,r[o]),n=!0;break}}n||i.modal.show({title:"Job submission failed",body:i._templateError(a,t&&t.err_msg),buttons:{Close:function(){i.modal.hide()}}})}})},validate:function(t){var e=t.inputs,i=-1,n=null;for(var r in e){var a=e[r],o=this.form.data.match(r),s=this.form.field_list[o],l=this.form.input_list[o];if(o&&l&&s){if(!l.optional&&null==a)return this.form.highlight(o),!1;if(a&&a.batch){var c=a.values.length,u=c>0&&a.values[0]&&a.values[0].src;if(u)if(null===n)n=u;else if(n!==u)return this.form.highlight(o,"Please select either dataset or dataset list fields for all batch mode fields."),!1;if(-1===i)i=c;else if(i!==c)return this.form.highlight(o,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+c+"</b> selection(s) while a previous field contains <b>"+i+"</b>."),!1}}else Galaxy.emit.debug("tool-form::validate()","Retrieving input objects failed.")}return!0},_templateSuccess:function(t){if(t.jobs&&t.jobs.length>0){var e=t.jobs.length,i=1==e?"1 job has":e+" jobs have",a=n("<div/>").addClass("donemessagelarge").append(n("<p/>").text(i+" been successfully added to the queue - resulting in the following datasets:"));return r.each(t.outputs,function(t){a.append(n("<p/>").addClass("messagerow").append(n("<b/>").text(t.hid+": "+t.name)))}),a.append(n("<p/>").append("<b/>").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")),a}return this._templateError(t,"Invalid success response. No jobs found.")},_templateError:function(t,e){return n("<div/>").addClass("errormessagelarge").append(n("<p/>").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. "+(e||""))).append(n("<pre/>").text(JSON.stringify(t,null,4)))}});e.default={View:v}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(3),a=function(t){return t&&t.__esModule?t:{default:t}}(r);e.default=t.Model.extend({initialize:function(){this.active={},this.last=null},execute:function(t){var e=this,i=a.default.uid(),r=t.length>0;this.active[i]=!0;var o=n.Deferred();o.promise().always(function(){delete e.active[i],r&&Galaxy.emit.debug("deferred::execute()",this.state().charAt(0).toUpperCase()+this.state().slice(1)+" "+i)}),n.when(this.last).always(function(){e.active[i]?(r&&Galaxy.emit.debug("deferred::execute()","Running "+i),t(o),!r&&o.resolve()):o.reject()}),this.last=o.promise()},reset:function(){Galaxy.emit.debug("deferred::execute()","Reset");for(var t in this.active)this.active[t]=!1},ready:function(){return n.isEmptyObject(this.active)}})}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(3),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=t.View.extend({initialize:function(t){this.options=a.default.merge(t,{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:"ui-table",selectable:!0,cls_tr:""}),this.setElement(this._template()),this.$thead=this.$("thead"),this.$tbody=this.$("tbody"),this.$tmessage=this.$("tmessage"),this.row=this._row(),this.row_count=0},events:{click:"_onclick",dblclick:"_ondblclick"},addHeader:function(t){this.row.append(n("<th/>").append(t))},appendHeader:function(){this.$thead.append(this.row),this.row=n("<tr/>")},add:function(t,e,i){var r=n("<td/>");e&&r.css("width",e),i&&r.css("text-align",i),this.row.append(r.append(t))},append:function(t,e){this._commit(t,e,!1)},prepend:function(t,e){this._commit(t,e,!0)},get:function(t){return this.$("#"+t)},del:function(t){var 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e={id:this,text:this},n=i.tags;t.isFunction(n)&&(n=n()),t(n).each(function(){if(o(this.id,e.id))return e=this,!1}),r.push(e)}),n(r)}))),"function"!=typeof i.query)throw"query function not defined for Select2 "+i.element.attr("id");if("top"===i.createSearchChoicePosition)i.createSearchChoicePosition=function(t,e){t.unshift(e)};else if("bottom"===i.createSearchChoicePosition)i.createSearchChoicePosition=function(t,e){t.push(e)};else if("function"!=typeof i.createSearchChoicePosition)throw"invalid createSearchChoicePosition option must be 'top', 'bottom' or a custom function";return i},monitorSource:function(){var i,n=this.opts.element,r=this;n.on("change.select2",this.bind(function(t){!0!==this.opts.element.data("select2-change-triggered")&&this.initSelection()})),this._sync=this.bind(function(){var t=n.prop("disabled");t===e&&(t=!1),this.enable(!t);var i=n.prop("readonly");i===e&&(i=!1),this.readonly(i),_(this.container,this.opts.element,this.opts.adaptContainerCssClass),this.container.addClass(S(this.opts.containerCssClass,this.opts.element)),_(this.dropdown,this.opts.element,this.opts.adaptDropdownCssClass),this.dropdown.addClass(S(this.opts.dropdownCssClass,this.opts.element))}),n.length&&n[0].attachEvent&&n.each(function(){this.attachEvent("onpropertychange",r._sync)}),(i=window.MutationObserver||window.WebKitMutationObserver||window.MozMutationObserver)!==e&&(this.propertyObserver&&(delete this.propertyObserver,this.propertyObserver=null),this.propertyObserver=new i(function(e){t.each(e,r._sync)}),this.propertyObserver.observe(n.get(0),{attributes:!0,subtree:!1}))},triggerSelect:function(e){var i=t.Event("select2-selecting",{val:this.id(e),object:e,choice:e});return this.opts.element.trigger(i),!i.isDefaultPrevented()},triggerChange:function(e){e=e||{},e=t.extend({},e,{type:"change",val:this.val()}),this.opts.element.data("select2-change-triggered",!0),this.opts.element.trigger(e),this.opts.element.data("select2-change-triggered",!1),this.opts.element.click(),this.opts.blurOnChange&&this.opts.element.blur()},isInterfaceEnabled:function(){return!0===this.enabledInterface},enableInterface:function(){var t=this._enabled&&!this._readonly,e=!t;return t!==this.enabledInterface&&(this.container.toggleClass("select2-container-disabled",e),this.close(),this.enabledInterface=t,!0)},enable:function(t){t===e&&(t=!0),this._enabled!==t&&(this._enabled=t,this.opts.element.prop("disabled",!t),this.enableInterface())},disable:function(){this.enable(!1)},readonly:function(t){t===e&&(t=!1),this._readonly!==t&&(this._readonly=t,this.opts.element.prop("readonly",t),this.enableInterface())},opened:function(){return!!this.container&&this.container.hasClass("select2-dropdown-open")},positionDropdown:function(){var e,i,n,r,a,o=this.dropdown,s=this.container.offset(),l=this.container.outerHeight(!1),u=this.container.outerWidth(!1),c=o.outerHeight(!1),h=t(window),d=h.width(),f=h.height(),p=h.scrollLeft()+d,m=h.scrollTop()+f,v=s.top+l,g=s.left,_=v+c<=m,y=s.top-c>=h.scrollTop(),b=o.outerWidth(!1),w=g+b<=p,x=o.hasClass("select2-drop-above");x?(i=!0,!y&&_&&(n=!0,i=!1)):(i=!1,!_&&y&&(n=!0,i=!0)),n&&(o.hide(),s=this.container.offset(),l=this.container.outerHeight(!1),u=this.container.outerWidth(!1),c=o.outerHeight(!1),p=h.scrollLeft()+d,m=h.scrollTop()+f,v=s.top+l,g=s.left,b=o.outerWidth(!1),w=g+b<=p,o.show(),this.focusSearch()),this.opts.dropdownAutoWidth?(a=t(".select2-results",o)[0],o.addClass("select2-drop-auto-width"),o.css("width",""),b=o.outerWidth(!1)+(a.scrollHeight===a.clientHeight?0:I.width),b>u?u=b:b=u,c=o.outerHeight(!1),w=g+b<=p):this.container.removeClass("select2-drop-auto-width"),"static"!==this.body.css("position")&&(e=this.body.offset(),v-=e.top,g-=e.left),w||(g=s.left+this.container.outerWidth(!1)-b),r={left:g,width:u},i?(r.top=s.top-c,r.bottom="auto",this.container.addClass("select2-drop-above"),o.addClass("select2-drop-above")):(r.top=v,r.bottom="auto",this.container.removeClass("select2-drop-above"),o.removeClass("select2-drop-above")),r=t.extend(r,S(this.opts.dropdownCss,this.opts.element)),o.css(r)},shouldOpen:function(){var e;return!this.opened()&&(!1!==this._enabled&&!0!==this._readonly&&(e=t.Event("select2-opening"),this.opts.element.trigger(e),!e.isDefaultPrevented()))},clearDropdownAlignmentPreference:function(){this.container.removeClass("select2-drop-above"),this.dropdown.removeClass("select2-drop-above")},open:function(){return!!this.shouldOpen()&&(this.opening(),N.on("mousemove.select2Event",function(t){L.x=t.pageX,L.y=t.pageY}),!0)},opening:function(){var e,n=this.containerEventName,r="scroll."+n,a="resize."+n,o="orientationchange."+n;this.container.addClass("select2-dropdown-open").addClass("select2-container-active"),this.clearDropdownAlignmentPreference(),this.dropdown[0]!==this.body.children().last()[0]&&this.dropdown.detach().appendTo(this.body),e=t("#select2-drop-mask"),0==e.length&&(e=t(document.createElement("div")),e.attr("id","select2-drop-mask").attr("class","select2-drop-mask"),e.hide(),e.appendTo(this.body),e.on("mousedown touchstart click",function(n){i(e);var r,a=t("#select2-drop");a.length>0&&(r=a.data("select2"),r.opts.selectOnBlur&&r.selectHighlighted({noFocus:!0}),r.close(),n.preventDefault(),n.stopPropagation())})),this.dropdown.prev()[0]!==e[0]&&this.dropdown.before(e),t("#select2-drop").removeAttr("id"),this.dropdown.attr("id","select2-drop"),e.show(),this.positionDropdown(),this.dropdown.show(),this.positionDropdown(),this.dropdown.addClass("select2-drop-active");var s=this;this.container.parents().add(window).each(function(){t(this).on(a+" "+r+" "+o,function(t){s.opened()&&s.positionDropdown()})})},close:function(){if(this.opened()){var e=this.containerEventName,i="scroll."+e,n="resize."+e,r="orientationchange."+e;this.container.parents().add(window).each(function(){t(this).off(i).off(n).off(r)}),this.clearDropdownAlignmentPreference(),t("#select2-drop-mask").hide(),this.dropdown.removeAttr("id"),this.dropdown.hide(),this.container.removeClass("select2-dropdown-open").removeClass("select2-container-active"),this.results.empty(),N.off("mousemove.select2Event"),this.clearSearch(),this.search.removeClass("select2-active"),this.opts.element.trigger(t.Event("select2-close"))}},externalSearch:function(t){this.open(),this.search.val(t),this.updateResults(!1)},clearSearch:function(){},getMaximumSelectionSize:function(){return S(this.opts.maximumSelectionSize,this.opts.element)},ensureHighlightVisible:function(){var e,i,n,r,a,o,s,l,u=this.results;if(!((i=this.highlight())<0)){if(0==i)return void u.scrollTop(0);e=this.findHighlightableChoices().find(".select2-result-label"),n=t(e[i]),l=(n.offset()||{}).top||0,r=l+n.outerHeight(!0),i===e.length-1&&(s=u.find("li.select2-more-results"),s.length>0&&(r=s.offset().top+s.outerHeight(!0))),a=u.offset().top+u.outerHeight(!0),r>a&&u.scrollTop(u.scrollTop()+(r-a)),o=l-u.offset().top,o<0&&"none"!=n.css("display")&&u.scrollTop(u.scrollTop()+o)}},findHighlightableChoices:function(){return this.results.find(".select2-result-selectable:not(.select2-disabled):not(.select2-selected)")},moveHighlight:function(e){for(var i=this.findHighlightableChoices(),n=this.highlight();n>-1&&n<i.length;){n+=e;var r=t(i[n]);if(r.hasClass("select2-result-selectable")&&!r.hasClass("select2-disabled")&&!r.hasClass("select2-selected")){this.highlight(n);break}}},highlight:function(e){var i,n,a=this.findHighlightableChoices();if(0===arguments.length)return r(a.filter(".select2-highlighted")[0],a.get());e>=a.length&&(e=a.length-1),e<0&&(e=0),this.removeHighlight(),i=t(a[e]),i.addClass("select2-highlighted"),this.search.attr("aria-activedescendant",i.find(".select2-result-label").attr("id")),this.ensureHighlightVisible(),this.liveRegion.text(i.text()),(n=i.data("select2-data"))&&this.opts.element.trigger({type:"select2-highlight",val:this.id(n),choice:n})},removeHighlight:function(){this.results.find(".select2-highlighted").removeClass("select2-highlighted")},touchMoved:function(){this._touchMoved=!0},clearTouchMoved:function(){this._touchMoved=!1},countSelectableResults:function(){return this.findHighlightableChoices().length},highlightUnderEvent:function(e){var i=t(e.target).closest(".select2-result-selectable");if(i.length>0&&!i.is(".select2-highlighted")){var n=this.findHighlightableChoices();this.highlight(n.index(i))}else 0==i.length&&this.removeHighlight()},loadMoreIfNeeded:function(){var t=this.results,e=t.find("li.select2-more-results"),i=this.resultsPage+1,n=this,r=this.search.val(),a=this.context;0!==e.length&&e.offset().top-t.offset().top-t.height()<=this.opts.loadMorePadding&&(e.addClass("select2-active"),this.opts.query({element:this.opts.element,term:r,page:i,context:a,matcher:this.opts.matcher,callback:this.bind(function(o){n.opened()&&(n.opts.populateResults.call(this,t,o.results,{term:r,page:i,context:a}),n.postprocessResults(o,!1,!1),!0===o.more?(e.detach().appendTo(t).text(S(n.opts.formatLoadMore,n.opts.element,i+1)),window.setTimeout(function(){n.loadMoreIfNeeded()},10)):e.remove(),n.positionDropdown(),n.resultsPage=i,n.context=o.context,this.opts.element.trigger({type:"select2-loaded",items:o}))})}))},tokenize:function(){},updateResults:function(i){function n(){u.removeClass("select2-active"),d.positionDropdown(),c.find(".select2-no-results,.select2-selection-limit,.select2-searching").length?d.liveRegion.text(c.text()):d.liveRegion.text(d.opts.formatMatches(c.find(".select2-result-selectable").length))}function r(t){c.html(t),n()}var a,s,l,u=this.search,c=this.results,h=this.opts,d=this,f=u.val(),p=t.data(this.container,"select2-last-term");if((!0===i||!p||!o(f,p))&&(t.data(this.container,"select2-last-term",f),!0===i||!1!==this.showSearchInput&&this.opened())){l=++this.queryCount;var m=this.getMaximumSelectionSize();if(m>=1&&(a=this.data(),t.isArray(a)&&a.length>=m&&C(h.formatSelectionTooBig,"formatSelectionTooBig")))return void r("<li class='select2-selection-limit'>"+S(h.formatSelectionTooBig,h.element,m)+"</li>");if(u.val().length<h.minimumInputLength)return r(C(h.formatInputTooShort,"formatInputTooShort")?"<li class='select2-no-results'>"+S(h.formatInputTooShort,h.element,u.val(),h.minimumInputLength)+"</li>":""),void(i&&this.showSearch&&this.showSearch(!0));if(h.maximumInputLength&&u.val().length>h.maximumInputLength)return void r(C(h.formatInputTooLong,"formatInputTooLong")?"<li class='select2-no-results'>"+S(h.formatInputTooLong,h.element,u.val(),h.maximumInputLength)+"</li>":"");h.formatSearching&&0===this.findHighlightableChoices().length&&r("<li class='select2-searching'>"+S(h.formatSearching,h.element)+"</li>"),u.addClass("select2-active"),this.removeHighlight(),s=this.tokenize(),s!=e&&null!=s&&u.val(s),this.resultsPage=1,h.query({element:h.element,term:u.val(),page:this.resultsPage,context:null,matcher:h.matcher,callback:this.bind(function(a){var s;if(l==this.queryCount){if(!this.opened())return void this.search.removeClass("select2-active");if(a.hasError!==e&&C(h.formatAjaxError,"formatAjaxError"))return void r("<li class='select2-ajax-error'>"+S(h.formatAjaxError,h.element,a.jqXHR,a.textStatus,a.errorThrown)+"</li>");if(this.context=a.context===e?null:a.context,this.opts.createSearchChoice&&""!==u.val()&&(s=this.opts.createSearchChoice.call(d,u.val(),a.results))!==e&&null!==s&&d.id(s)!==e&&null!==d.id(s)&&0===t(a.results).filter(function(){return o(d.id(this),d.id(s))}).length&&this.opts.createSearchChoicePosition(a.results,s),0===a.results.length&&C(h.formatNoMatches,"formatNoMatches"))return void r("<li class='select2-no-results'>"+S(h.formatNoMatches,h.element,u.val())+"</li>");c.empty(),d.opts.populateResults.call(this,c,a.results,{term:u.val(),page:this.resultsPage,context:null}),!0===a.more&&C(h.formatLoadMore,"formatLoadMore")&&(c.append("<li class='select2-more-results'>"+h.escapeMarkup(S(h.formatLoadMore,h.element,this.resultsPage))+"</li>"),window.setTimeout(function(){d.loadMoreIfNeeded()},10)),this.postprocessResults(a,i),n(),this.opts.element.trigger({type:"select2-loaded",items:a})}})})}},cancel:function(){this.close()},blur:function(){this.opts.selectOnBlur&&this.selectHighlighted({noFocus:!0}),this.close(),this.container.removeClass("select2-container-active"),this.search[0]===document.activeElement&&this.search.blur(),this.clearSearch(),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus")},focusSearch:function(){f(this.search)},selectHighlighted:function(t){if(this._touchMoved)return void this.clearTouchMoved();var e=this.highlight(),i=this.results.find(".select2-highlighted"),n=i.closest(".select2-result").data("select2-data");n?(this.highlight(e),this.onSelect(n,t)):t&&t.noFocus&&this.close()},getPlaceholder:function(){var t;return this.opts.element.attr("placeholder")||this.opts.element.attr("data-placeholder")||this.opts.element.data("placeholder")||this.opts.placeholder||((t=this.getPlaceholderOption())!==e?t.text():e)},getPlaceholderOption:function(){if(this.select){var i=this.select.children("option").first();if(this.opts.placeholderOption!==e)return"first"===this.opts.placeholderOption&&i||"function"==typeof this.opts.placeholderOption&&this.opts.placeholderOption(this.select);if(""===t.trim(i.text())&&""===i.val())return i}},initContainerWidth:function(){function i(){var i,n,r,a,o,s;if("off"===this.opts.width)return null;if("element"===this.opts.width)return 0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px";if("copy"===this.opts.width||"resolve"===this.opts.width){if((i=this.opts.element.attr("style"))!==e)for(n=i.split(";"),a=0,o=n.length;a<o;a+=1)if(s=n[a].replace(/\s/g,""),null!==(r=s.match(/^width:(([-+]?([0-9]*\.)?[0-9]+)(px|em|ex|%|in|cm|mm|pt|pc))/i))&&r.length>=1)return r[1];return"resolve"===this.opts.width?(i=this.opts.element.css("width"),i.indexOf("%")>0?i:0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px"):null}return t.isFunction(this.opts.width)?this.opts.width():this.opts.width}var n=i.call(this);null!==n&&this.container.css("width",n)}}),D=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container"}).html(["<a href='javascript:void(0)' class='select2-choice' tabindex='-1'>","   <span class='select2-chosen'>&#160;</span><abbr class='select2-search-choice-close'></abbr>","   <span class='select2-arrow' role='presentation'><b role='presentation'></b></span>","</a>","<label for='' class='select2-offscreen'></label>","<input class='select2-focusser select2-offscreen' type='text' aria-haspopup='true' role='button' />","<div class='select2-drop select2-display-none'>","   <div class='select2-search'>","       <label for='' class='select2-offscreen'></label>","       <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input' role='combobox' aria-expanded='true'","       aria-autocomplete='list' />","   </div>","   <ul class='select2-results' role='listbox'>","   </ul>","</div>"].join(""))},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.focusser.prop("disabled",!this.isInterfaceEnabled())},opening:function(){var i,n,r;this.opts.minimumResultsForSearch>=0&&this.showSearch(!0),this.parent.opening.apply(this,arguments),!1!==this.showSearchInput&&this.search.val(this.focusser.val()),this.opts.shouldFocusInput(this)&&(this.search.focus(),i=this.search.get(0),i.createTextRange?(n=i.createTextRange(),n.collapse(!1),n.select()):i.setSelectionRange&&(r=this.search.val().length,i.setSelectionRange(r,r))),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.focusser.prop("disabled",!0).val(""),this.updateResults(!0),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&(this.parent.close.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},focus:function(){this.opened()?this.close():(this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},isFocused:function(){return this.container.hasClass("select2-container-active")},cancel:function(){this.parent.cancel.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus()},destroy:function(){t("label[for='"+this.focusser.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),A.call(this,"selection","focusser")},initContainer:function(){var e,n,r=this.container,a=this.dropdown,o=P();this.opts.minimumResultsForSearch<0?this.showSearch(!1):this.showSearch(!0),this.selection=e=r.find(".select2-choice"),this.focusser=r.find(".select2-focusser"),e.find(".select2-chosen").attr("id","select2-chosen-"+o),this.focusser.attr("aria-labelledby","select2-chosen-"+o),this.results.attr("id","select2-results-"+o),this.search.attr("aria-owns","select2-results-"+o),this.focusser.attr("id","s2id_autogen"+o),n=t("label[for='"+this.opts.element.attr("id")+"']"),this.focusser.prev().text(n.text()).attr("for",this.focusser.attr("id"));var s=this.opts.element.attr("title");this.opts.element.attr("title",s||n.text()),this.focusser.attr("tabindex",this.elementTabIndex),this.search.attr("id",this.focusser.attr("id")+"_search"),this.search.prev().text(t("label[for='"+this.focusser.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&229!=t.keyCode){if(t.which===O.PAGE_UP||t.which===O.PAGE_DOWN)return void m(t);switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void m(t);case O.ENTER:return this.selectHighlighted(),void m(t);case O.TAB:return void this.selectHighlighted({noFocus:!0});case O.ESC:return this.cancel(t),void m(t)}}})),this.search.on("blur",this.bind(function(t){document.activeElement===this.body.get(0)&&window.setTimeout(this.bind(function(){this.opened()&&this.search.focus()}),0)})),this.focusser.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.ESC){if(!1===this.opts.openOnEnter&&t.which===O.ENTER)return void m(t);if(t.which==O.DOWN||t.which==O.UP||t.which==O.ENTER&&this.opts.openOnEnter){if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return;return this.open(),void m(t)}return t.which==O.DELETE||t.which==O.BACKSPACE?(this.opts.allowClear&&this.clear(),void m(t)):void 0}})),u(this.focusser),this.focusser.on("keyup-change input",this.bind(function(t){if(this.opts.minimumResultsForSearch>=0){if(t.stopPropagation(),this.opened())return;this.open()}})),e.on("mousedown touchstart","abbr",this.bind(function(t){this.isInterfaceEnabled()&&(this.clear(),v(t),this.close(),this.selection.focus())})),e.on("mousedown touchstart",this.bind(function(n){i(e),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.opened()?this.close():this.isInterfaceEnabled()&&this.open(),m(n)})),a.on("mousedown touchstart",this.bind(function(){this.opts.shouldFocusInput(this)&&this.search.focus()})),e.on("focus",this.bind(function(t){m(t)})),this.focusser.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})).on("blur",this.bind(function(){this.opened()||(this.container.removeClass("select2-container-active"),this.opts.element.trigger(t.Event("select2-blur")))})),this.search.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.setPlaceholder()},clear:function(e){var i=this.selection.data("select2-data");if(i){var n=t.Event("select2-clearing");if(this.opts.element.trigger(n),n.isDefaultPrevented())return;var r=this.getPlaceholderOption();this.opts.element.val(r?r.val():""),this.selection.find(".select2-chosen").empty(),this.selection.removeData("select2-data"),this.setPlaceholder(),!1!==e&&(this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}))}},initSelection:function(){if(this.isPlaceholderOptionSelected())this.updateSelection(null),this.close(),this.setPlaceholder();else{var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.setPlaceholder(),t.nextSearchTerm=t.opts.nextSearchTerm(i,t.search.val()))})}},isPlaceholderOptionSelected:function(){var t;return this.getPlaceholder()!==e&&((t=this.getPlaceholderOption())!==e&&t.prop("selected")||""===this.opts.element.val()||this.opts.element.val()===e||null===this.opts.element.val())},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=t.find("option").filter(function(){return this.selected&&!this.disabled});e(i.optionToData(n))}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=i.val(),a=null;e.query({matcher:function(t,i,n){var s=o(r,e.id(n));return s&&(a=n),s},callback:t.isFunction(n)?function(){n(a)}:t.noop})}),e},getPlaceholder:function(){return this.select&&this.getPlaceholderOption()===e?e:this.parent.getPlaceholder.apply(this,arguments)},setPlaceholder:function(){var t=this.getPlaceholder();if(this.isPlaceholderOptionSelected()&&t!==e){if(this.select&&this.getPlaceholderOption()===e)return;this.selection.find(".select2-chosen").html(this.opts.escapeMarkup(t)),this.selection.addClass("select2-default"),this.container.removeClass("select2-allowclear")}},postprocessResults:function(t,e,i){var n=0,r=this;if(this.findHighlightableChoices().each2(function(t,e){if(o(r.id(e.data("select2-data")),r.opts.element.val()))return n=t,!1}),!1!==i&&(!0===e&&n>=0?this.highlight(n):this.highlight(0)),!0===e){var a=this.opts.minimumResultsForSearch;a>=0&&this.showSearch(T(t.results)>=a)}},showSearch:function(e){this.showSearchInput!==e&&(this.showSearchInput=e,this.dropdown.find(".select2-search").toggleClass("select2-search-hidden",!e),this.dropdown.find(".select2-search").toggleClass("select2-offscreen",!e),t(this.dropdown,this.container).toggleClass("select2-with-searchbox",e))},onSelect:function(t,e){if(this.triggerSelect(t)){var i=this.opts.element.val(),n=this.data();this.opts.element.val(this.id(t)),this.updateSelection(t),this.opts.element.trigger({type:"select2-selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.close(),e&&e.noFocus||!this.opts.shouldFocusInput(this)||this.focusser.focus(),o(i,this.id(t))||this.triggerChange({added:t,removed:n})}},updateSelection:function(t){var i,n,r=this.selection.find(".select2-chosen");this.selection.data("select2-data",t),r.empty(),null!==t&&(i=this.opts.formatSelection(t,r,this.opts.escapeMarkup)),i!==e&&r.append(i),n=this.opts.formatSelectionCssClass(t,r),n!==e&&r.addClass(n),this.selection.removeClass("select2-default"),this.opts.allowClear&&this.getPlaceholder()!==e&&this.container.addClass("select2-allowclear")},val:function(){var t,i=!1,n=null,r=this,a=this.data();if(0===arguments.length)return this.opts.element.val();if(t=arguments[0],arguments.length>1&&(i=arguments[1]),this.select)this.select.val(t).find("option").filter(function(){return this.selected}).each2(function(t,e){return n=r.optionToData(e),!1}),this.updateSelection(n),this.setPlaceholder(),i&&this.triggerChange({added:n,removed:a});else{if(!t&&0!==t)return void this.clear(i);if(this.opts.initSelection===e)throw new Error("cannot call val() if initSelection() is not defined");this.opts.element.val(t),this.opts.initSelection(this.opts.element,function(t){r.opts.element.val(t?r.id(t):""),r.updateSelection(t),r.setPlaceholder(),i&&r.triggerChange({added:t,removed:a})})}},clearSearch:function(){this.search.val(""),this.focusser.val("")},data:function(t){var i,n=!1;if(0===arguments.length)return i=this.selection.data("select2-data"),i==e&&(i=null),i;arguments.length>1&&(n=arguments[1]),t?(i=this.data(),this.opts.element.val(t?this.id(t):""),this.updateSelection(t),n&&this.triggerChange({added:t,removed:i})):this.clear(n)}}),j=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container select2-container-multi"}).html(["<ul class='select2-choices'>","  <li class='select2-search-field'>","    <label for='' class='select2-offscreen'></label>","    <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input'>","  </li>","</ul>","<div class='select2-drop select2-drop-multi select2-display-none'>","   <ul class='select2-results'>","   </ul>","</div>"].join(""))},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=[];t.find("option").filter(function(){return this.selected&&!this.disabled}).each2(function(t,e){n.push(i.optionToData(e))}),e(n)}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=s(i.val(),e.separator),a=[];e.query({matcher:function(i,n,s){var l=t.grep(r,function(t){return o(t,e.id(s))}).length;return l&&a.push(s),l},callback:t.isFunction(n)?function(){for(var t=[],i=0;i<r.length;i++)for(var s=r[i],l=0;l<a.length;l++){var u=a[l];if(o(s,e.id(u))){t.push(u),a.splice(l,1);break}}n(t)}:t.noop})}),e},selectChoice:function(t){var e=this.container.find(".select2-search-choice-focus");e.length&&t&&t[0]==e[0]||(e.length&&this.opts.element.trigger("choice-deselected",e),e.removeClass("select2-search-choice-focus"),t&&t.length&&(this.close(),t.addClass("select2-search-choice-focus"),this.opts.element.trigger("choice-selected",t)))},destroy:function(){t("label[for='"+this.search.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),A.call(this,"searchContainer","selection")},initContainer:function(){var e,i=".select2-choices";this.searchContainer=this.container.find(".select2-search-field"),this.selection=e=this.container.find(i);var n=this;this.selection.on("click",".select2-search-choice:not(.select2-locked)",function(e){n.search[0].focus(),n.selectChoice(t(this))}),this.search.attr("id","s2id_autogen"+P()),this.search.prev().text(t("label[for='"+this.opts.element.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("input paste",this.bind(function(){this.search.attr("placeholder")&&0==this.search.val().length||this.isInterfaceEnabled()&&(this.opened()||this.open())})),this.search.attr("tabindex",this.elementTabIndex),this.keydowns=0,this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()){++this.keydowns;var i=e.find(".select2-search-choice-focus"),n=i.prev(".select2-search-choice:not(.select2-locked)"),r=i.next(".select2-search-choice:not(.select2-locked)"),a=p(this.search);if(i.length&&(t.which==O.LEFT||t.which==O.RIGHT||t.which==O.BACKSPACE||t.which==O.DELETE||t.which==O.ENTER)){var o=i;return t.which==O.LEFT&&n.length?o=n:t.which==O.RIGHT?o=r.length?r:null:t.which===O.BACKSPACE?this.unselect(i.first())&&(this.search.width(10),o=n.length?n:r):t.which==O.DELETE?this.unselect(i.first())&&(this.search.width(10),o=r.length?r:null):t.which==O.ENTER&&(o=null),this.selectChoice(o),m(t),void(o&&o.length||this.open())}if((t.which===O.BACKSPACE&&1==this.keydowns||t.which==O.LEFT)&&0==a.offset&&!a.length)return this.selectChoice(e.find(".select2-search-choice:not(.select2-locked)").last()),void m(t);if(this.selectChoice(null),this.opened())switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void m(t);case O.ENTER:return this.selectHighlighted(),void m(t);case O.TAB:return this.selectHighlighted({noFocus:!0}),void this.close();case O.ESC:return this.cancel(t),void m(t)}if(t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.BACKSPACE&&t.which!==O.ESC){if(t.which===O.ENTER){if(!1===this.opts.openOnEnter)return;if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return}this.open(),t.which!==O.PAGE_UP&&t.which!==O.PAGE_DOWN||m(t),t.which===O.ENTER&&m(t)}}})),this.search.on("keyup",this.bind(function(t){this.keydowns=0,this.resizeSearch()})),this.search.on("blur",this.bind(function(e){this.container.removeClass("select2-container-active"),this.search.removeClass("select2-focused"),this.selectChoice(null),this.opened()||this.clearSearch(),e.stopImmediatePropagation(),this.opts.element.trigger(t.Event("select2-blur"))})),this.container.on("click",i,this.bind(function(e){this.isInterfaceEnabled()&&(t(e.target).closest(".select2-search-choice").length>0||(this.selectChoice(null),this.clearPlaceholder(),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.open(),this.focusSearch(),e.preventDefault()))})),this.container.on("focus",i,this.bind(function(){this.isInterfaceEnabled()&&(this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"),this.clearPlaceholder())})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.clearSearch()},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.search.prop("disabled",!this.isInterfaceEnabled())},initSelection:function(){if(""===this.opts.element.val()&&""===this.opts.element.text()&&(this.updateSelection([]),this.close(),this.clearSearch()),this.select||""!==this.opts.element.val()){var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.clearSearch())})}},clearSearch:function(){var t=this.getPlaceholder(),i=this.getMaxSearchWidth();t!==e&&0===this.getVal().length&&!1===this.search.hasClass("select2-focused")?(this.search.val(t).addClass("select2-default"),this.search.width(i>0?i:this.container.css("width"))):this.search.val("").width(10)},clearPlaceholder:function(){this.search.hasClass("select2-default")&&this.search.val("").removeClass("select2-default")},opening:function(){this.clearPlaceholder(),this.resizeSearch(),this.parent.opening.apply(this,arguments),this.focusSearch(),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.updateResults(!0),this.opts.shouldFocusInput(this)&&this.search.focus(),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&this.parent.close.apply(this,arguments)},focus:function(){this.close(),this.search.focus()},isFocused:function(){return this.search.hasClass("select2-focused")},updateSelection:function(e){var i=[],n=[],a=this;t(e).each(function(){r(a.id(this),i)<0&&(i.push(a.id(this)),n.push(this))}),e=n,this.selection.find(".select2-search-choice").remove(),t(e).each(function(){a.addSelectedChoice(this)}),a.postprocessResults()},tokenize:function(){var t=this.search.val();null!=(t=this.opts.tokenizer.call(this,t,this.data(),this.bind(this.onSelect),this.opts))&&t!=e&&(this.search.val(t),t.length>0&&this.open())},onSelect:function(t,i){this.triggerSelect(t)&&""!==t.text&&(this.addSelectedChoice(t),this.opts.element.trigger({type:"selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.moveHighlight(1),!this.select&&this.opts.closeOnSelect||this.postprocessResults(t,!1,!0===this.opts.closeOnSelect),this.opts.closeOnSelect?(this.clearSearch(),this.updateResults(),this.close(),this.search.width(10)):this.countSelectableResults()>0?(this.search.width(10),this.resizeSearch(),this.getMaximumSelectionSize()>0&&this.val().length>=this.getMaximumSelectionSize()?this.updateResults(!0):this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.updateResults(),this.search.select()),this.positionDropdown()):(this.close(),this.search.width(10)),this.triggerChange({added:t}),i&&i.noFocus||this.focusSearch())},cancel:function(){this.close(),this.focusSearch()},addSelectedChoice:function(i){var n,r,a=!i.locked,o=t("<li class='select2-search-choice'>    <div></div>    <a href='#' class='select2-search-choice-close' tabindex='-1'></a></li>"),s=t("<li class='select2-search-choice select2-locked'><div></div></li>"),l=a?o:s,u=this.id(i),c=this.getVal();n=this.opts.formatSelection(i,l.find("div"),this.opts.escapeMarkup),n!=e&&l.find("div").replaceWith("<div>"+n+"</div>"),r=this.opts.formatSelectionCssClass(i,l.find("div")),r!=e&&l.addClass(r),a&&l.find(".select2-search-choice-close").on("mousedown",m).on("click dblclick",this.bind(function(e){this.isInterfaceEnabled()&&(this.unselect(t(e.target)),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus"),m(e),this.close(),this.focusSearch())})).on("focus",this.bind(function(){this.isInterfaceEnabled()&&(this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"))})),l.data("select2-data",i),l.insertBefore(this.searchContainer),c.push(u),this.setVal(c)},unselect:function(e){var i,n,a=this.getVal();if(e=e.closest(".select2-search-choice"),0===e.length)throw"Invalid argument: "+e+". Must be .select2-search-choice";if(i=e.data("select2-data")){var o=t.Event("select2-removing");if(o.val=this.id(i),o.choice=i,this.opts.element.trigger(o),o.isDefaultPrevented())return!1;for(;(n=r(this.id(i),a))>=0;)a.splice(n,1),this.setVal(a),this.select&&this.postprocessResults();return e.remove(),this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}),!0}},postprocessResults:function(t,e,i){var n=this.getVal(),a=this.results.find(".select2-result"),o=this.results.find(".select2-result-with-children"),s=this;a.each2(function(t,e){r(s.id(e.data("select2-data")),n)>=0&&(e.addClass("select2-selected"),e.find(".select2-result-selectable").addClass("select2-selected"))}),o.each2(function(t,e){e.is(".select2-result-selectable")||0!==e.find(".select2-result-selectable:not(.select2-selected)").length||e.addClass("select2-selected")}),-1==this.highlight()&&!1!==i&&s.highlight(0),!this.opts.createSearchChoice&&!a.filter(".select2-result:not(.select2-selected)").length>0&&(!t||t&&!t.more&&0===this.results.find(".select2-no-results").length)&&C(s.opts.formatNoMatches,"formatNoMatches")&&this.results.append("<li class='select2-no-results'>"+S(s.opts.formatNoMatches,s.opts.element,s.search.val())+"</li>")},getMaxSearchWidth:function(){return this.selection.width()-l(this.search)},resizeSearch:function(){var t,e,i,n,r,a=l(this.search);t=g(this.search)+10,e=this.search.offset().left,i=this.selection.width(),n=this.selection.offset().left,r=i-(e-n)-a,r<t&&(r=i-a),r<40&&(r=i-a),r<=0&&(r=t),this.search.width(Math.floor(r))},getVal:function(){var t;return this.select?(t=this.select.val(),null===t?[]:t):(t=this.opts.element.val(),s(t,this.opts.separator))},setVal:function(e){var i;this.select?this.select.val(e):(i=[],t(e).each(function(){r(this,i)<0&&i.push(this)}),this.opts.element.val(0===i.length?"":i.join(this.opts.separator)))},buildChangeDetails:function(t,e){for(var e=e.slice(0),t=t.slice(0),i=0;i<e.length;i++)for(var n=0;n<t.length;n++)o(this.opts.id(e[i]),this.opts.id(t[n]))&&(e.splice(i,1),i>0&&i--,t.splice(n,1),n--);return{added:e,removed:t}},val:function(i,n){var r,a=this;if(0===arguments.length)return this.getVal();if(r=this.data(),r.length||(r=[]),!i&&0!==i)return this.opts.element.val(""),this.updateSelection([]),this.clearSearch(),void(n&&this.triggerChange({added:this.data(),removed:r}));if(this.setVal(i),this.select)this.opts.initSelection(this.select,this.bind(this.updateSelection)),n&&this.triggerChange(this.buildChangeDetails(r,this.data()));else{if(this.opts.initSelection===e)throw new Error("val() cannot be called if initSelection() is not defined");this.opts.initSelection(this.opts.element,function(e){var i=t.map(e,a.id);a.setVal(i),a.updateSelection(e),a.clearSearch(),n&&a.triggerChange(a.buildChangeDetails(r,a.data()))})}this.clearSearch()},onSortStart:function(){if(this.select)throw new Error("Sorting of elements is not supported when attached to <select>. Attach to <input type='hidden'/> instead.");this.search.width(0),this.searchContainer.hide()},onSortEnd:function(){var e=[],i=this;this.searchContainer.show(),this.searchContainer.appendTo(this.searchContainer.parent()),this.resizeSearch(),this.selection.find(".select2-search-choice").each(function(){e.push(i.opts.id(t(this).data("select2-data")))}),this.setVal(e),this.triggerChange()},data:function(e,i){var n,r,a=this;if(0===arguments.length)return this.selection.children(".select2-search-choice").map(function(){return t(this).data("select2-data")}).get();r=this.data(),e||(e=[]),n=t.map(e,function(t){return a.opts.id(t)}),this.setVal(n),this.updateSelection(e),this.clearSearch(),i&&this.triggerChange(this.buildChangeDetails(r,this.data()))}}),t.fn.select2=function(){var i,n,a,o,s,l=Array.prototype.slice.call(arguments,0),u=["val","destroy","opened","open","close","focus","isFocused","container","dropdown","onSortStart","onSortEnd","enable","disable","readonly","positionDropdown","data","search"],c=["opened","isFocused","container","dropdown"],h=["val","data"],d={search:"externalSearch"};return this.each(function(){if(0===l.length||"object"==typeof l[0])i=0===l.length?{}:t.extend({},l[0]),i.element=t(this),"select"===i.element.get(0).tagName.toLowerCase()?s=i.element.prop("multiple"):(s=i.multiple||!1,"tags"in i&&(i.multiple=s=!0)),n=s?new window.Select2.class.multi:new window.Select2.class.single,n.init(i);else{if("string"!=typeof l[0])throw"Invalid arguments to select2 plugin: "+l;if(r(l[0],u)<0)throw"Unknown method: "+l[0];if(o=e,(n=t(this).data("select2"))===e)return;if(a=l[0],"container"===a?o=n.container:"dropdown"===a?o=n.dropdown:(d[a]&&(a=d[a]),o=n[a].apply(n,l.slice(1))),r(l[0],c)>=0||r(l[0],h)>=0&&1==l.length)return!1}}),o===e?this:o},t.fn.select2.defaults={width:"copy",loadMorePadding:0,closeOnSelect:!0,openOnEnter:!0,containerCss:{},dropdownCss:{},containerCssClass:"",dropdownCssClass:"",formatResult:function(t,e,i,n){var r=[];return y(t.text,i.term,r,n),r.join("")},formatSelection:function(t,i,n){return t?n(t.text):e},sortResults:function(t,e,i){return t},formatResultCssClass:function(t){return t.css},formatSelectionCssClass:function(t,i){return e},minimumResultsForSearch:0,minimumInputLength:0,maximumInputLength:null,maximumSelectionSize:0,id:function(t){return t==e?null:t.id},matcher:function(t,e){return n(""+e).toUpperCase().indexOf(n(""+t).toUpperCase())>=0},separator:",",tokenSeparators:[],tokenizer:M,escapeMarkup:b,blurOnChange:!1,selectOnBlur:!1,adaptContainerCssClass:function(t){return t},adaptDropdownCssClass:function(t){return null},nextSearchTerm:function(t,i){return e},searchInputPlaceholder:"",createSearchChoicePosition:"top",shouldFocusInput:function(t){return!(("ontouchstart"in window||navigator.msMaxTouchPoints>0)&&t.opts.minimumResultsForSearch<0)}},t.fn.select2.locales=[],t.fn.select2.locales.en={formatMatches:function(t){return 1===t?"One result is available, press enter to select it.":t+" results are available, use up and down arrow keys to navigate."},formatNoMatches:function(){return"No matches found"},formatAjaxError:function(t,e,i){return"Loading failed"},formatInputTooShort:function(t,e){var i=e-t.length;return"Please enter "+i+" or more character"+(1==i?"":"s")},formatInputTooLong:function(t,e){var i=t.length-e;return"Please delete "+i+" character"+(1==i?"":"s")},formatSelectionTooBig:function(t){return"You can only select "+t+" item"+(1==t?"":"s")},formatLoadMore:function(t){return"Loading more results…"},formatSearching:function(){return"Searching…"}},t.extend(t.fn.select2.defaults,t.fn.select2.locales.en),t.fn.select2.ajaxDefaults={transport:t.ajax,params:{type:"GET",cache:!1,dataType:"json"}},window.Select2={query:{ajax:w,local:x,tags:k},util:{debounce:h,markMatch:y,escapeMarkup:b,stripDiacritics:n},class:{abstract:$,single:D,multi:j}}}}(t)}).call(e,i(0))},function(t,e,i){(function(t){!function(t,e){var i,n;n=e.document,i=function(){function i(i){var n;try{n=e.localStorage}catch(t){n=!1}this._options=t.extend({name:"tour",steps:[],container:"body",autoscroll:!0,keyboard:!0,storage:n,debug:!1,backdrop:!1,backdropContainer:"body",backdropPadding:0,redirect:!0,orphan:!1,duration:!1,delay:!1,basePath:"",template:'<div class="popover" role="tooltip"> <div class="arrow"></div> <h3 class="popover-title"></h3> <div class="popover-content"></div> <div class="popover-navigation"> <div class="btn-group"> <button class="btn btn-sm btn-default" data-role="prev">&laquo; Prev</button> <button class="btn btn-sm btn-default" data-role="next">Next &raquo;</button> <button class="btn btn-sm btn-default" data-role="pause-resume" data-pause-text="Pause" data-resume-text="Resume">Pause</button> </div> <button class="btn btn-sm btn-default" data-role="end">End tour</button> </div> </div>',afterSetState:function(t,e){},afterGetState:function(t,e){},afterRemoveState:function(t){},onStart:function(t){},onEnd:function(t){},onShow:function(t){},onShown:function(t){},onHide:function(t){},onHidden:function(t){},onNext:function(t){},onPrev:function(t){},onPause:function(t,e){},onResume:function(t,e){},onRedirectError:function(t){}},i),this._force=!1,this._inited=!1,this._current=null,this.backdrop={overlay:null,$element:null,$background:null,backgroundShown:!1,overlayElementShown:!1}}return i.prototype.addSteps=function(t){var e,i,n;for(i=0,n=t.length;i<n;i++)e=t[i],this.addStep(e);return this},i.prototype.addStep=function(t){return this._options.steps.push(t),this},i.prototype.getStep=function(e){if(null!=this._options.steps[e])return t.extend({id:"step-"+e,path:"",host:"",placement:"right",title:"",content:"<p></p>",next:e===this._options.steps.length-1?-1:e+1,prev:e-1,animation:!0,container:this._options.container,autoscroll:this._options.autoscroll,backdrop:this._options.backdrop,backdropContainer:this._options.backdropContainer,backdropPadding:this._options.backdropPadding,redirect:this._options.redirect,reflexElement:this._options.steps[e].element,orphan:this._options.orphan,duration:this._options.duration,delay:this._options.delay,template:this._options.template,onShow:this._options.onShow,onShown:this._options.onShown,onHide:this._options.onHide,onHidden:this._options.onHidden,onNext:this._options.onNext,onPrev:this._options.onPrev,onPause:this._options.onPause,onResume:this._options.onResume,onRedirectError:this._options.onRedirectError},this._options.steps[e])},i.prototype.init=function(t){return this._force=t,this.ended()?(this._debug("Tour ended, init prevented."),this):(this.setCurrentStep(),this._initMouseNavigation(),this._initKeyboardNavigation(),this._onResize(function(t){return function(){return t.showStep(t._current)}}(this)),null!==this._current&&this.showStep(this._current),this._inited=!0,this)},i.prototype.start=function(t){var e;return null==t&&(t=!1),this._inited||this.init(t),null===this._current&&(e=this._makePromise(null!=this._options.onStart?this._options.onStart(this):void 0),this._callOnPromiseDone(e,this.showStep,0)),this},i.prototype.next=function(){var t;return t=this.hideStep(this._current),this._callOnPromiseDone(t,this._showNextStep)},i.prototype.prev=function(){var t;return t=this.hideStep(this._current),this._callOnPromiseDone(t,this._showPrevStep)},i.prototype.goTo=function(t){var e;return e=this.hideStep(this._current),this._callOnPromiseDone(e,this.showStep,t)},i.prototype.end=function(){var i,r;return i=function(i){return function(r){if(t(n).off("click.tour-"+i._options.name),t(n).off("keyup.tour-"+i._options.name),t(e).off("resize.tour-"+i._options.name),i._setState("end","yes"),i._inited=!1,i._force=!1,i._clearTimer(),null!=i._options.onEnd)return i._options.onEnd(i)}}(this),r=this.hideStep(this._current),this._callOnPromiseDone(r,i)},i.prototype.ended=function(){return!this._force&&!!this._getState("end")},i.prototype.restart=function(){return this._removeState("current_step"),this._removeState("end"),this._removeState("redirect_to"),this.start()},i.prototype.pause=function(){var t;return(t=this.getStep(this._current))&&t.duration?(this._paused=!0,this._duration-=(new Date).getTime()-this._start,e.clearTimeout(this._timer),this._debug("Paused/Stopped step "+(this._current+1)+" timer ("+this._duration+" remaining)."),null!=t.onPause?t.onPause(this,this._duration):void 0):this},i.prototype.resume=function(){var t;return(t=this.getStep(this._current))&&t.duration?(this._paused=!1,this._start=(new Date).getTime(),this._duration=this._duration||t.duration,this._timer=e.setTimeout(function(t){return function(){return t._isLast()?t.next():t.end()}}(this),this._duration),this._debug("Started step "+(this._current+1)+" timer with duration "+this._duration),null!=t.onResume&&this._duration!==t.duration?t.onResume(this,this._duration):void 0):this},i.prototype.hideStep=function(e){var i,n,r;if(r=this.getStep(e))return this._clearTimer(),n=this._makePromise(null!=r.onHide?r.onHide(this,e):void 0),i=function(i){return function(n){var a;if(a=t(r.element),a.data("bs.popover")||a.data("popover")||(a=t("body")),a.popover("destroy").removeClass("tour-"+i._options.name+"-element tour-"+i._options.name+"-"+e+"-element"),a.removeData("bs.popover"),r.reflex&&t(r.reflexElement).removeClass("tour-step-element-reflex").off(i._reflexEvent(r.reflex)+".tour-"+i._options.name),r.backdrop&&i._hideBackdrop(),null!=r.onHidden)return r.onHidden(i)}}(this),this._callOnPromiseDone(n,i),n},i.prototype.showStep=function(t){var i,r,a,o;return this.ended()?(this._debug("Tour ended, showStep prevented."),this):(o=this.getStep(t))?(a=t<this._current,i=this._makePromise(null!=o.onShow?o.onShow(this,t):void 0),r=function(e){return function(i){var r,s;if(e.setCurrentStep(t),r=function(){switch({}.toString.call(o.path)){case"[object Function]":return o.path();case"[object String]":return this._options.basePath+o.path;default:return o.path}}.call(e),!e._isRedirect(o.host,r,n.location)||(e._redirect(o,t,r),e._isJustPathHashDifferent(o.host,r,n.location))){if(e._isOrphan(o)){if(!1===o.orphan)return e._debug("Skip the orphan step "+(e._current+1)+".\nOrphan option is false and the element does not exist or is hidden."),void(a?e._showPrevStep():e._showNextStep());e._debug("Show the orphan step "+(e._current+1)+". Orphans option is true.")}return o.backdrop&&e._showBackdrop(o),s=function(){if(e.getCurrentStep()===t&&!e.ended())return null!=o.element&&o.backdrop&&e._showOverlayElement(o),e._showPopover(o,t),null!=o.onShown&&o.onShown(e),e._debug("Step "+(e._current+1)+" of "+e._options.steps.length)},o.autoscroll?e._scrollIntoView(o.element,s):s(),o.duration?e.resume():void 0}}}(this),o.delay?(this._debug("Wait "+o.delay+" milliseconds to show the step "+(this._current+1)),e.setTimeout(function(t){return function(){return t._callOnPromiseDone(i,r)}}(this),o.delay)):this._callOnPromiseDone(i,r),i):void 0},i.prototype.getCurrentStep=function(){return this._current},i.prototype.setCurrentStep=function(t){return null!=t?(this._current=t,this._setState("current_step",t)):(this._current=this._getState("current_step"),this._current=null===this._current?null:parseInt(this._current,10)),this},i.prototype.redraw=function(){return this._showOverlayElement(this.getStep(this.getCurrentStep()).element,!0)},i.prototype._setState=function(t,e){var i,n;if(this._options.storage){n=this._options.name+"_"+t;try{this._options.storage.setItem(n,e)}catch(t){i=t,i.code===DOMException.QUOTA_EXCEEDED_ERR&&this._debug("LocalStorage quota exceeded. State storage failed.")}return this._options.afterSetState(n,e)}return null==this._state&&(this._state={}),this._state[t]=e},i.prototype._removeState=function(t){var e;return this._options.storage?(e=this._options.name+"_"+t,this._options.storage.removeItem(e),this._options.afterRemoveState(e)):null!=this._state?delete this._state[t]:void 0},i.prototype._getState=function(t){var e,i;return this._options.storage?(e=this._options.name+"_"+t,i=this._options.storage.getItem(e)):null!=this._state&&(i=this._state[t]),void 0!==i&&"null"!==i||(i=null),this._options.afterGetState(t,i),i},i.prototype._showNextStep=function(){var t,e,i;return i=this.getStep(this._current),e=function(t){return function(e){return t.showStep(i.next)}}(this),t=this._makePromise(null!=i.onNext?i.onNext(this):void 0),this._callOnPromiseDone(t,e)},i.prototype._showPrevStep=function(){var t,e,i;return i=this.getStep(this._current),e=function(t){return function(e){return t.showStep(i.prev)}}(this),t=this._makePromise(null!=i.onPrev?i.onPrev(this):void 0),this._callOnPromiseDone(t,e)},i.prototype._debug=function(t){if(this._options.debug)return e.console.log("Bootstrap Tour '"+this._options.name+"' | "+t)},i.prototype._isRedirect=function(t,e,i){var n;return!(""===t||!this._isHostDifferent(t,i.href))||(n=[i.pathname,i.search,i.hash].join(""),null!=e&&""!==e&&("[object RegExp]"==={}.toString.call(e)&&!e.test(n)||"[object String]"==={}.toString.call(e)&&this._isPathDifferent(e,n)))},i.prototype._isHostDifferent=function(t,e){return this._getProtocol(t)!==this._getProtocol(e)||this._getHost(t)!==this._getHost(e)},i.prototype._isPathDifferent=function(t,e){return this._getPath(t)!==this._getPath(e)||!this._equal(this._getQuery(t),this._getQuery(e))||!this._equal(this._getHash(t),this._getHash(e))},i.prototype._isJustPathHashDifferent=function(t,e,i){var n;return(""===t||!this._isHostDifferent(t,i.href))&&(n=[i.pathname,i.search,i.hash].join(""),"[object String]"==={}.toString.call(e)&&(this._getPath(e)===this._getPath(n)&&this._equal(this._getQuery(e),this._getQuery(n))&&!this._equal(this._getHash(e),this._getHash(n))))},i.prototype._redirect=function(e,i,r){if(t.isFunction(e.redirect))return e.redirect.call(this,r);if(!0===e.redirect){if(this._debug("Redirect to "+e.host+r),this._getState("redirect_to")!==""+i)return this._setState("redirect_to",""+i),n.location.href=""+e.host+r;if(this._debug("Error redirection loop to "+r),this._removeState("redirect_to"),null!=e.onRedirectError)return e.onRedirectError(this)}},i.prototype._isOrphan=function(e){return null==e.element||!t(e.element).length||t(e.element).is(":hidden")&&"http://www.w3.org/2000/svg"!==t(e.element)[0].namespaceURI},i.prototype._isLast=function(){return this._current<this._options.steps.length-1},i.prototype._showPopover=function(e,i){var n,r,a,o,s;if(t(".tour-"+this._options.name).remove(),o=t.extend({},this._options),a=this._isOrphan(e),e.template=this._template(e,i),a&&(e.element="body",e.placement="top"),n=t(e.element),n.addClass("tour-"+this._options.name+"-element tour-"+this._options.name+"-"+i+"-element"),e.options&&t.extend(o,e.options),e.reflex&&!a&&t(e.reflexElement).addClass("tour-step-element-reflex").off(this._reflexEvent(e.reflex)+".tour-"+this._options.name).on(this._reflexEvent(e.reflex)+".tour-"+this._options.name,function(t){return function(){return t._isLast()?t.next():t.end()}}(this)),s=!0===e.smartPlacement&&-1===e.placement.search(/auto/i),n.popover({placement:s?"auto "+e.placement:e.placement,trigger:"manual",title:e.title,content:e.content,html:!0,animation:e.animation,container:e.container,template:e.template,selector:e.element}).popover("show"),r=n.data("bs.popover")?n.data("bs.popover").tip():n.data("popover").tip(),r.attr("id",e.id),this._reposition(r,e),a)return this._center(r)},i.prototype._template=function(e,i){var n,r,a,o,s,l;return l=e.template,this._isOrphan(e)&&"[object Boolean]"!=={}.toString.call(e.orphan)&&(l=e.orphan),s=t(t.isFunction(l)?l(i,e):l),n=s.find(".popover-navigation"),a=n.find('[data-role="prev"]'),r=n.find('[data-role="next"]'),o=n.find('[data-role="pause-resume"]'),this._isOrphan(e)&&s.addClass("orphan"),s.addClass("tour-"+this._options.name+" tour-"+this._options.name+"-"+i),e.reflex&&s.addClass("tour-"+this._options.name+"-reflex"),e.prev<0&&(a.addClass("disabled"),a.prop("disabled",!0)),e.next<0&&(r.addClass("disabled"),r.prop("disabled",!0)),e.duration||o.remove(),s.clone().wrap("<div>").parent().html()},i.prototype._reflexEvent=function(t){return"[object Boolean]"==={}.toString.call(t)?"click":t},i.prototype._reposition=function(e,i){var r,a,o,s,l,u,c;if(s=e[0].offsetWidth,a=e[0].offsetHeight,c=e.offset(),l=c.left,u=c.top,r=t(n).outerHeight()-c.top-e.outerHeight(),r<0&&(c.top=c.top+r),o=t("html").outerWidth()-c.left-e.outerWidth(),o<0&&(c.left=c.left+o),c.top<0&&(c.top=0),c.left<0&&(c.left=0),e.offset(c),"bottom"===i.placement||"top"===i.placement){if(l!==c.left)return this._replaceArrow(e,2*(c.left-l),s,"left")}else if(u!==c.top)return this._replaceArrow(e,2*(c.top-u),a,"top")},i.prototype._center=function(i){return i.css("top",t(e).outerHeight()/2-i.outerHeight()/2)},i.prototype._replaceArrow=function(t,e,i,n){return t.find(".arrow").css(n,e?50*(1-e/i)+"%":"")},i.prototype._scrollIntoView=function(i,n){var r,a,o,s,l,u;return r=t(i),r.length?(a=t(e),s=r.offset().top,u=a.height(),l=Math.max(0,s-u/2),this._debug("Scroll into view. ScrollTop: "+l+". Element offset: "+s+". Window height: "+u+"."),o=0,t("body, html").stop(!0,!0).animate({scrollTop:Math.ceil(l)},function(t){return function(){if(2==++o)return n(),t._debug("Scroll into view.\nAnimation end element offset: "+r.offset().top+".\nWindow height: "+a.height()+".")}}(this))):n()},i.prototype._onResize=function(i,n){return t(e).on("resize.tour-"+this._options.name,function(){return clearTimeout(n),n=setTimeout(i,100)})},i.prototype._initMouseNavigation=function(){var e;return e=this,t(n).off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='prev']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='next']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='end']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='pause-resume']").on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='next']",function(t){return function(e){return e.preventDefault(),t.next()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='prev']",function(t){return function(e){return e.preventDefault(),t.prev()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='end']",function(t){return function(e){return e.preventDefault(),t.end()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='pause-resume']",function(i){var n;return i.preventDefault(),n=t(this),n.text(e._paused?n.data("pause-text"):n.data("resume-text")),e._paused?e.resume():e.pause()})},i.prototype._initKeyboardNavigation=function(){if(this._options.keyboard)return t(n).on("keyup.tour-"+this._options.name,function(t){return function(e){if(e.which)switch(e.which){case 39:return e.preventDefault(),t._isLast()?t.next():t.end();case 37:if(e.preventDefault(),t._current>0)return t.prev();break;case 27:return e.preventDefault(),t.end()}}}(this))},i.prototype._makePromise=function(e){return e&&t.isFunction(e.then)?e:null},i.prototype._callOnPromiseDone=function(t,e,i){return t?t.then(function(t){return function(n){return e.call(t,i)}}(this)):e.call(this,i)},i.prototype._showBackdrop=function(e){if(!this.backdrop.backgroundShown)return this.backdrop=t("<div>",{class:"tour-backdrop"}),this.backdrop.backgroundShown=!0,t(e.backdropContainer).append(this.backdrop)},i.prototype._hideBackdrop=function(){return this._hideOverlayElement(),this._hideBackground()},i.prototype._hideBackground=function(){if(this.backdrop)return this.backdrop.remove(),this.backdrop.overlay=null,this.backdrop.backgroundShown=!1},i.prototype._showOverlayElement=function(e,i){var n,r;if((n=t(e.element))&&0!==n.length&&(!this.backdrop.overlayElementShown||i))return this.backdrop.overlayElementShown||(this.backdrop.$element=n.addClass("tour-step-backdrop"),this.backdrop.$background=t("<div>",{class:"tour-step-background"}),this.backdrop.$background.appendTo(e.backdropContainer),this.backdrop.overlayElementShown=!0),r={width:n.innerWidth(),height:n.innerHeight(),offset:n.offset()},e.backdropPadding&&(r=this._applyBackdropPadding(e.backdropPadding,r)),this.backdrop.$background.width(r.width).height(r.height).offset(r.offset)},i.prototype._hideOverlayElement=function(){if(this.backdrop.overlayElementShown)return this.backdrop.$element.removeClass("tour-step-backdrop"),this.backdrop.$background.remove(),this.backdrop.$element=null,this.backdrop.$background=null,this.backdrop.overlayElementShown=!1},i.prototype._applyBackdropPadding=function(t,e){return"object"==typeof t?(null==t.top&&(t.top=0),null==t.right&&(t.right=0),null==t.bottom&&(t.bottom=0),null==t.left&&(t.left=0),e.offset.top=e.offset.top-t.top,e.offset.left=e.offset.left-t.left,e.width=e.width+t.left+t.right,e.height=e.height+t.top+t.bottom):(e.offset.top=e.offset.top-t,e.offset.left=e.offset.left-t,e.width=e.width+2*t,e.height=e.height+2*t),e},i.prototype._clearTimer=function(){return e.clearTimeout(this._timer),this._timer=null,this._duration=null},i.prototype._getProtocol=function(t){return t=t.split("://"),t.length>1?t[0]:"http"},i.prototype._getHost=function(t){return t=t.split("//"),t=t.length>1?t[1]:t[0],t.split("/")[0]},i.prototype._getPath=function(t){return t.replace(/\/?$/,"").split("?")[0].split("#")[0]},i.prototype._getQuery=function(t){return this._getParams(t,"?")},i.prototype._getHash=function(t){return this._getParams(t,"#")},i.prototype._getParams=function(t,e){var i,n,r,a,o;if(n=t.split(e),1===n.length)return{};for(n=n[1].split("&"),r={},a=0,o=n.length;a<o;a++)i=n[a],i=i.split("="),r[i[0]]=i[1]||"";return r},i.prototype._equal=function(t,e){var i,n;if("[object Object]"==={}.toString.call(t)&&"[object Object]"==={}.toString.call(e)){for(i in t)if(n=t[i],e[i]!==n)return!1;for(i in e)if(n=e[i],t[i]!==n)return!1;return!0}return t===e},i}(),e.Tour=i}(t,window)}).call(e,i(0))},function(t,e){var i;i=function(){return this}();try{i=i||Function("return this")()||(0,eval)("this")}catch(t){"object"==typeof window&&(i=window)}t.exports=i},function(t,e,i){"use strict";(function(t){function n(t,e){o(t).find(".tag-name").each(function(){o(this).click(function(){var t=o(this).text(),i=t.split(":");return e(i[0],i[1]),!0})})}Object.defineProperty(e,"__esModule",{value:!0});var r=i(0),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=a.default;a.default.fn.autocomplete_tagging=function(e){function i(t){o(t).mouseenter(function(){o(this).attr("src",l.delete_tag_img_rollover)}),o(t).mouseleave(function(){o(this).attr("src",l.delete_tag_img)}),o(t).click(function(){var e=o(this).parent(),i=e.find(".tag-name").eq(0),n=i.text(),r=n.split(":"),a=r[0],s=r[1],u=e.prev();e.remove(),delete l.tags[a];var d=l.get_toggle_link_text_fn(l.tags);return h.text(d),o.ajax({url:l.ajax_delete_tag_url,data:{tag_name:a},error:function(){l.tags[a]=s,u.hasClass("tag-button")?u.after(e):c.prepend(e),alert("Remove tag failed"),h.text(l.get_toggle_link_text_fn(l.tags)),t.mouseenter(function(){o(this).attr("src",l.delete_tag_img_rollover)}),t.mouseleave(function(){o(this).attr("src",l.delete_tag_img)})},success:function(){}}),!0})}function r(t){var e=o("<img/>").attr("src",l.delete_tag_img).addClass("delete-tag-img");i(e);var n=o("<span>").text(t).addClass("tag-name");n.click(function(){var e=t.split(":");return l.tag_click_fn(e[0],e[1]),!0});var r=o("<span></span>").addClass("tag-button");return r.append(n),l.editable&&r.append(e),r}var s={get_toggle_link_text_fn:function(e){var i=t.size(e);return i>0?i+(i>1?" 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C=k.extend({initialize:function(t){b.default.cssLoadFile("static/style/jquery.rating.css"),b.default.cssLoadFile("static/style/autocomplete_tagging.css"),b.default.cssLoadFile("static/style/jquery-ui/smoothness/jquery-ui.css"),b.default.cssLoadFile("static/style/library.css"),b.default.cssLoadFile("static/style/trackster.css"),this.baseURL=t},save_viz:function(){Galaxy.modal.show({title:"Saving...",body:"progress"});var t=[];n(".bookmark").each(function(){t.push({position:n(this).children(".position").text(),annotation:n(this).children(".annotation").text()})});var e=x.overview_drawable?x.overview_drawable.config.get_value("name"):null,i={view:x.to_dict(),viewport:{chrom:x.chrom,start:x.low,end:x.high,overview:e},bookmarks:t};return n.ajax({url:Galaxy.root+"visualization/save",type:"POST",dataType:"json",data:{id:x.vis_id,title:x.config.get_value("name"),dbkey:x.dbkey,type:"trackster",vis_json:JSON.stringify(i)}}).success(function(t){Galaxy.modal.hide(),x.vis_id=t.vis_id,x.has_changes=!1,window.history.pushState({},"",t.url+window.location.hash)}).error(function(){Galaxy.modal.show({title:(0,o.default)("Could Not Save"),body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})},createButtonMenu:function(){var t=this,e=p.default.create_icon_buttons_menu([{icon_class:"plus-button",title:(0,o.default)("Add tracks"),on_click:function(){d.default.select_datasets({dbkey:x.dbkey},function(t){l.each(t,function(t){x.add_drawable(c.default.object_from_template(t,x,x))})})}},{icon_class:"block--plus",title:(0,o.default)("Add group"),on_click:function(){x.add_drawable(new c.default.DrawableGroup(x,x,{name:"New 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d.default.TrackBrowserRouter(e),t.history.start()},init_keyboard_nav:function(t){n(document).keyup(function(e){if(!n(e.srcElement).is(":input"))switch(e.which){case 37:t.move_fraction(.25);break;case 38:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()-20);break;case 39:t.move_fraction(-.25);break;case 40:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()+20)}})},handle_unsaved_changes:function(t){if(t.has_changes){var e=this;Galaxy.modal.show({title:(0,o.default)("Close visualization"),body:"There are unsaved changes to your visualization which will be lost if you do not save them.",buttons:{Cancel:function(){Galaxy.modal.hide()},"Leave without Saving":function(){n(window).off("beforeunload"),window.location=Galaxy.root+"visualization"},Save:function(){n.when(e.save_viz()).then(function(){window.location=Galaxy.root+"visualization"})}}})}else window.location=Galaxy.root+"visualization"}}),S=t.View.extend({initialize:function(){w=new C(Galaxy.root),w.createButtonMenu(),w.buttonMenu.$el.attr("style","float: right"),n("#center .unified-panel-header-inner").append(w.buttonMenu.$el),n("#right .unified-panel-title").append("Bookmarks"),n("#right .unified-panel-icons").append("<a id='add-bookmark-button' class='icon-button menu-button plus-button' href='javascript:void(0);' title='Add bookmark'></a>"),n("#right-border").click(function(){x.resize_window()}),force_right_panel("hide"),galaxy_config.app.id?this.view_existing():v.default.get("dataset_id")?this.choose_existing_or_new():this.view_new()},choose_existing_or_new:function(){var t=this,e=v.default.get("dbkey"),i={},n={dbkey:e,dataset_id:v.default.get("dataset_id"),hda_ldda:v.default.get("hda_ldda"),gene_region:v.default.get("gene_region")};e&&(i["f-dbkey"]=e),Galaxy.modal.show({title:"View Data in a New or Saved Visualization?",body:"<p><ul style='list-style: disc inside none'>You can add this dataset as:<li>a new track to one of your existing, saved Trackster sessions if they share the genome build: <b>"+(e||"Not available.")+"</b></li><li>or create a new session with this dataset as the only track</li></ul></p>",buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"View in saved visualization":function(){t.view_in_saved(n)},"View in new visualization":function(){t.view_new()}}})},view_in_saved:function(t){var e=new _.default({url_base:Galaxy.root+"visualization/list_tracks",dict_format:!0,embedded:!0});Galaxy.modal.show({title:(0,o.default)("Add Data to Saved Visualization"),body:e.$el,buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"Add to visualization":function(){n(parent.document).find("input[name=id]:checked").each(function(){t.id=n(this).val(),window.location=Galaxy.root+"visualization/trackster?"+n.param(t)})}}})},view_existing:function(){var t=galaxy_config.app.viz_config;x=w.create_visualization({container:n("#center .unified-panel-body"),name:t.title,vis_id:t.vis_id,dbkey:t.dbkey},t.viewport,t.tracks,t.bookmarks,!0),this.init_editor()},view_new:function(){var t=this;n.ajax({url:Galaxy.root+"api/genomes?chrom_info=True",data:{},error:function(){alert("Couldn't create new browser.")},success:function(e){Galaxy.modal.show({title:(0,o.default)("New Visualization"),body:t.template_view_new(e),buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},Create:function(){t.create_browser(n("#new-title").val(),n("#new-dbkey").val()),Galaxy.modal.hide()}}});var i=e.map(function(t){return t[1]});galaxy_config.app.default_dbkey&&l.contains(i,galaxy_config.app.default_dbkey)&&n("#new-dbkey").val(galaxy_config.app.default_dbkey),n("#new-title").focus(),n("select[name='dbkey']").select2(),n("#overlay").css("overflow","auto")}})},template_view_new:function(t){for(var e='<form id="new-browser-form" action="javascript:void(0);" method="post" onsubmit="return false;"><div class="form-row"><label for="new-title">Browser name:</label><div class="form-row-input"><input type="text" name="title" id="new-title" value="Unnamed"></input></div><div style="clear: both;"></div></div><div class="form-row"><label for="new-dbkey">Reference genome build (dbkey): </label><div class="form-row-input"><select name="dbkey" id="new-dbkey">',i=0;i<t.length;i++)e+='<option value="'+t[i][1]+'">'+t[i][0]+"</option>";return e+='</select></div><div style="clear: both;"></div></div><div class="form-row">Is the build not listed here? <a href="'+Galaxy.root+'custom_builds">Add a Custom Build</a></div></form>'},create_browser:function(t,e){n(document).trigger("convert_to_values"),x=w.create_visualization({container:n("#center .unified-panel-body"),name:t,dbkey:e},galaxy_config.app.gene_region),this.init_editor(),x.editor=!0},init_editor:function(){n("#center 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e.default=t,e}(a),s=i(36),l=r(s),u=i(35),c=r(u),h=i(86),d=(r(h),{hidden:!1,show:function(){this.set("hidden",!1)},hide:function(){this.set("hidden",!0)},toggle:function(){this.set("hidden",!this.get("hidden"))},is_visible:function(){return!this.attributes.hidden}}),f=t.Model.extend({defaults:{name:null,label:null,type:null,value:null,html:null,num_samples:5},initialize:function(t){this.attributes.html=unescape(this.attributes.html)},copy:function(){return new f(this.toJSON())},set_value:function(t){this.set("value",t||"")}}),p=t.Collection.extend({model:f}),m=f.extend({}),v=f.extend({set_value:function(t){this.set("value",parseInt(t,10))},get_samples:function(){return d3.scale.linear().domain([this.get("min"),this.get("max")]).ticks(this.get("num_samples"))}}),g=v.extend({set_value:function(t){this.set("value",parseFloat(t))}}),_=f.extend({get_samples:function(){return o.map(this.get("options"),function(t){return t[0]})}});f.subModelTypes={integer:v,float:g,data:m,select:_};var y=t.Model.extend({defaults:{id:null,name:null,description:null,target:null,inputs:[],outputs:[]},urlRoot:Galaxy.root+"api/tools",initialize:function(t){this.set("inputs",new p(o.map(t.inputs,function(t){return new(f.subModelTypes[t.type]||f)(t)})))},toJSON:function(){var e=t.Model.prototype.toJSON.call(this);return e.inputs=this.get("inputs").map(function(t){return t.toJSON()}),e},remove_inputs:function(t){var e=this,i=e.get("inputs").filter(function(e){return-1!==t.indexOf(e.get("type"))});e.get("inputs").remove(i)},copy:function(e){var i=new y(this.toJSON());if(e){var n=new t.Collection;i.get("inputs").each(function(t){t.get_samples()&&n.push(t)}),i.set("inputs",n)}return i},apply_search_results:function(t){return-1!==o.indexOf(t,this.attributes.id)?this.show():this.hide(),this.is_visible()},set_input_value:function(t,e){this.get("inputs").find(function(e){return e.get("name")===t}).set("value",e)},set_input_values:function(t){var e=this;o.each(o.keys(t),function(i){e.set_input_value(i,t[i])})},run:function(){return this._run()},rerun:function(t,e){return this._run({action:"rerun",target_dataset_id:t.id,regions:e})},get_inputs_dict:function(){var t={};return this.get("inputs").each(function(e){t[e.get("name")]=e.get("value")}),t},_run:function(t){var e=o.extend({tool_id:this.id,inputs:this.get_inputs_dict()},t),i=n.Deferred(),r=new l.default.ServerStateDeferred({ajax_settings:{url:this.urlRoot,data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});return n.when(r.go()).then(function(t){i.resolve(new c.default.DatasetCollection(t))}),i}});o.extend(y.prototype,d);var b=(t.View.extend({}),t.Collection.extend({model:y})),w=t.Model.extend(d),x=t.Model.extend({defaults:{elems:[],open:!1},clear_search_results:function(){o.each(this.attributes.elems,function(t){t.show()}),this.show(),this.set("open",!1)},apply_search_results:function(t){var e,i=!0;o.each(this.attributes.elems,function(n){n instanceof w?(e=n,e.hide()):n instanceof y&&n.apply_search_results(t)&&(i=!1,e&&e.show())}),i?this.hide():(this.show(),this.set("open",!0))}});o.extend(x.prototype,d);var k=t.Model.extend({defaults:{search_hint_string:"search tools",min_chars_for_search:3,clear_btn_url:"",visible:!0,query:"",results:null,clear_key:27},urlRoot:Galaxy.root+"api/tools",initialize:function(){this.on("change:query",this.do_search)},do_search:function(){var t=this.attributes.query;if(t.length<this.attributes.min_chars_for_search)return void this.set("results",null);var e=t;this.timer&&clearTimeout(this.timer),n("#search-clear-btn").hide(),n("#search-spinner").show();var i=this;this.timer=setTimeout(function(){"undefined"!=typeof ga&&ga("send","pageview",Galaxy.root+"?q="+e),n.get(i.urlRoot,{q:e},function(t){i.set("results",t),n("#search-spinner").hide(),n("#search-clear-btn").show()},"json")},400)},clear_search:function(){this.set("query",""),this.set("results",null)}});o.extend(k.prototype,d);var C=t.Model.extend({initialize:function(e){this.attributes.tool_search=e.tool_search,this.attributes.tool_search.on("change:results",this.apply_search_results,this),this.attributes.tools=e.tools,this.attributes.layout=new t.Collection(this.parse(e.layout))},parse:function(t){var e=this,i=function t(i){var n=i.model_class;if(n.indexOf("Tool")===n.length-4)return e.attributes.tools.get(i.id);if("ToolSection"===n){var r=o.map(i.elems,t);return i.elems=r,new x(i)}return"ToolSectionLabel"===n?new w(i):void 0};return o.map(t,i)},clear_search_results:function(){this.get("layout").each(function(t){t instanceof x?t.clear_search_results():t.show()})},apply_search_results:function(){var t=this.get("tool_search").get("results");if(null===t)return void this.clear_search_results();var e=null;this.get("layout").each(function(i){i instanceof w?(e=i,e.hide()):i instanceof y?i.apply_search_results(t)&&e&&e.show():(e=null,i.apply_search_results(t))})}}),S=t.View.extend({initialize:function(){this.model.on("change:hidden",this.update_visible,this),this.update_visible()},update_visible:function(){this.model.attributes.hidden?this.$el.hide():this.$el.show()}}),T=S.extend({tagName:"div",render:function(){var t=n("<div/>");t.append(D.tool_link(this.model.toJSON()));var e=this.model.get("form_style",null);if("upload1"===this.model.id)t.find("a").on("click",function(t){t.preventDefault(),Galaxy.upload.show()});else if("regular"===e){var i=this;t.find("a").on("click",function(t){t.preventDefault(),Galaxy.router.push("/",{tool_id:i.model.id,version:i.model.get("version")})})}return this.$el.append(t),this}}),M=S.extend({tagName:"div",className:"toolPanelLabel",render:function(){return this.$el.append(n("<span/>").text(this.model.attributes.text)),this}}),A=S.extend({tagName:"div",className:"toolSectionWrapper",initialize:function(){S.prototype.initialize.call(this),this.model.on("change:open",this.update_open,this)},render:function(){this.$el.append(D.panel_section(this.model.toJSON()));var t=this.$el.find(".toolSectionBody");return o.each(this.model.attributes.elems,function(e){if(e instanceof y){var i=new T({model:e,className:"toolTitle"});i.render(),t.append(i.$el)}else if(e instanceof w){var n=new M({model:e});n.render(),t.append(n.$el)}}),this},events:{"click .toolSectionTitle > 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this.clear(),!1;this.model.set("query",this.$el.find(":input").val())}}),O=t.View.extend({tagName:"div",className:"toolMenu",initialize:function(){this.model.get("tool_search").on("change:results",this.handle_search_results,this)},render:function(){var t=this,e=new E({model:this.model.get("tool_search")});return e.render(),t.$el.append(e.$el),this.model.get("layout").each(function(e){if(e instanceof x){var i=new A({model:e});i.render(),t.$el.append(i.$el)}else if(e instanceof y){var n=new T({model:e,className:"toolTitleNoSection"});n.render(),t.$el.append(n.$el)}else if(e instanceof w){var r=new M({model:e});r.render(),t.$el.append(r.$el)}}),t.$el.find("a.tool-link").click(function(e){var i=n(this).attr("class").split(/\s+/)[0],r=t.model.get("tools").get(i);t.trigger("tool_link_click",e,r)}),this},handle_search_results:function(){var t=this.model.get("tool_search").get("results");t&&0===t.length?n("#search-no-results").show():n("#search-no-results").hide()}}),$=t.View.extend({className:"toolForm",render:function(){this.$el.children().remove(),this.$el.append(D.tool_form(this.model.toJSON()))}}),D=(t.View.extend({className:"toolMenuAndView",initialize:function(){this.tool_panel_view=new O({collection:this.collection}),this.tool_form_view=new $},render:function(){this.tool_panel_view.render(),this.tool_panel_view.$el.css("float","left"),this.$el.append(this.tool_panel_view.$el),this.tool_form_view.$el.hide(),this.$el.append(this.tool_form_view.$el);var t=this;this.tool_panel_view.on("tool_link_click",function(e,i){e.preventDefault(),t.show_tool(i)})},show_tool:function(t){var e=this;t.fetch().done(function(){e.tool_form_view.model=t,e.tool_form_view.render(),e.tool_form_view.$el.show(),n("#left").width("650px")})}}),{tool_search:o.template(['<input id="tool-search-query" class="search-query parent-width" name="query" 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%>)</div>','<div class="toolFormBody">',"<% _.each( tool.inputs, function( input ){ %>",'<div class="form-row">','<label for="<%- input.name %>"><%- input.label %>:</label>','<div class="form-row-input">',"<%= input.html %>","</div>",'<div class="toolParamHelp" style="clear: both;">',"<%- input.help %>","</div>",'<div style="clear: both;"></div>',"</div>","<% }); %>","</div>",'<div class="form-row form-actions">','<input type="submit" class="btn btn-primary" name="runtool_btn" value="Execute" />',"</div>",'<div class="toolHelp">','<div class="toolHelpBody"><% tool.help %></div>',"</div>"].join(""),{variable:"tool"})});e.default={ToolParameter:f,IntegerToolParameter:v,SelectToolParameter:_,Tool:y,ToolCollection:b,ToolSearch:k,ToolPanel:C,ToolPanelView:O,ToolFormView:$}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(4),u=a(l),c=i(6),h=a(c),d=i(8),f=a(d),p=i(45),m=a(p),v=i(34),g=a(v),_=t.View.extend({initialize:function(t){var e=this;this.modal=parent.Galaxy.modal||new f.default.View,this.form=new m.default(u.default.merge({listen_to_history:!0,always_refresh:!1,buildmodel:function(t,i){var r=i.model.attributes,a="",o={},l=r.job_id;l?a=Galaxy.root+"api/jobs/"+l+"/build_for_rerun":(a=Galaxy.root+"api/tools/"+r.id+"/build",o=n.extend({},Galaxy.params),o.tool_id&&delete o.tool_id),r.version&&(o.tool_version=r.version),u.default.get({url:a,data:o,success:function(n){if(!n.display)return void(window.location=Galaxy.root);i.model.set(n),e._customize(i),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model ready.",n),t.resolve()},error:function(e,a){var o=e&&e.err_msg||"Uncaught error.";401==a?window.location=Galaxy.root+"user/login?"+n.param({redirect:Galaxy.root+"?tool_id="+r.id}):i.$el.is(":empty")?i.$el.prepend(new 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e=this,i=t.model.attributes,n=new h.default.Button({icon:"fa-check",tooltip:"Execute: "+i.name+" ("+i.version+")",title:(0,s.default)("Execute"),cls:"btn btn-primary ui-clear-float",wait_cls:"btn btn-info ui-clear-float",onclick:function(){n.wait(),t.portlet.disable(),e.submit(i,function(){n.unwait(),t.portlet.enable()})}});i.buttons={execute:n},i.job_id&&i.job_remap&&i.inputs.push({label:"Resume dependencies from this job",name:"rerun_remap_job_id",type:"select",display:"radio",ignore:"__ignore__",value:"__ignore__",options:[["Yes",i.job_id],["No","__ignore__"]],help:"The previous run of this tool failed and other tools were waiting for it to finish successfully. Use this option to resume those tools using the new output(s) of this tool run."})},submit:function(t,e){var i=this,a={tool_id:t.id,tool_version:t.version,inputs:this.form.data.create()};if(this.form.trigger("reset"),!i.validate(a))return Galaxy.emit.debug("tool-form::submit()","Submission canceled. Validation failed."),void(e&&e());if(t.action!==Galaxy.root+"tool_runner/index"){var o=n("<form/>").attr({action:t.action,method:t.method,enctype:t.enctype});return r.each(a.inputs,function(t,e){o.append(n("<input/>").attr({name:e,value:t}))}),o.hide().appendTo("body").submit().remove(),void(e&&e())}Galaxy.emit.debug("tool-form::submit()","Validation complete.",a),u.default.request({type:"POST",url:Galaxy.root+"api/tools",data:a,success:function(t){if(e&&e(),i.$el.children().hide(),i.$el.append(i._templateSuccess(t)),t.jobs&&t.jobs.length>0){i.$el.append(n("<div/>",{id:"webhook-view"}));new g.default.WebhookView({urlRoot:Galaxy.root+"api/webhooks/tool",toolId:a.tool_id})}parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents()},error:function(t){e&&e(),Galaxy.emit.debug("tool-form::submit","Submission failed.",t);var n=!1;if(t&&t.err_data){var r=i.form.data.matchResponse(t.err_data);for(var o in r){i.form.highlight(o,r[o]),n=!0;break}}n||i.modal.show({title:(0,s.default)("Job submission failed"),body:i._templateError(a,t&&t.err_msg),buttons:{Close:function(){i.modal.hide()}}})}})},validate:function(t){var e=t.inputs,i=-1,n=null;for(var r in e){var a=e[r],o=this.form.data.match(r),s=this.form.field_list[o],l=this.form.input_list[o];if(o&&l&&s){if(!l.optional&&null==a)return this.form.highlight(o),!1;if(a&&a.batch){var u=a.values.length,c=u>0&&a.values[0]&&a.values[0].src;if(c)if(null===n)n=c;else if(n!==c)return this.form.highlight(o,"Please select either dataset or dataset list fields for all batch mode fields."),!1;if(-1===i)i=u;else if(i!==u)return this.form.highlight(o,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+u+"</b> selection(s) while a previous field contains <b>"+i+"</b>."),!1}}else Galaxy.emit.debug("tool-form::validate()","Retrieving input objects failed.")}return!0},_templateSuccess:function(t){if(t.jobs&&t.jobs.length>0){var e=t.jobs.length,i=1==e?"1 job has":e+" jobs have",a=n("<div/>").addClass("donemessagelarge").append(n("<p/>").text(i+" been successfully added to the queue - resulting in the following datasets:"));return r.each(t.outputs,function(t){a.append(n("<p/>").addClass("messagerow").append(n("<b/>").text(t.hid+": "+t.name)))}),a.append(n("<p/>").append("<b/>").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")),a}return this._templateError(t,"Invalid success response. No jobs found.")},_templateError:function(t,e){return n("<div/>").addClass("errormessagelarge").append(n("<p/>").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. 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  * @author <a href="mailto:dylan@dyve.net">Dylan Verheul</a>
  * @version 2.4.4
@@ -53,10 +53,10 @@ return a&&(s.length<4&&n("jQuery.fn.attr( props, pass ) is deprecated"),e&&!h.te
  * @license MIT | GPL | Apache 2.0, see LICENSE.txt
  * @see https://github.com/dyve/jquery-autocomplete
  */
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n=parseInt(t,10);return i=i||{},(isNaN(n)||i.min&&n<i.min)&&(n=e),n},n=function(t,e){return[t,encodeURIComponent(e)].join("=")},r=function(e,i){var r=[];return t.each(i,function(t,e){r.push(n(t,e))}),r.length&&(e+=-1===e.indexOf("?")?"?":"&",e+=r.join("&")),e},a=function(t,e,i){return t=String(t.value),e=String(e.value),i||(t=t.toLowerCase(),e=e.toLowerCase()),t>e?1:t<e?-1:0},o=function(t,e,i){var n,r,a,o,s,l,c=[];for(l=String(t).replace("\r\n","\n").split(e),n=0;n<l.length;n++){for(o=l[n].split(i),a=[],r=0;r<o.length;r++)a.push(decodeURIComponent(o[r]));s=a.shift(),c.push({value:s,data:a})}return c};t.Autocompleter=function(e,n){if(!e||!(e instanceof t)||1!==e.length||"INPUT"!==e.get(0).tagName.toUpperCase()&&"TEXTAREA"!==e.get(0).tagName.toUpperCase())throw new Error("Invalid parameter for jquery.Autocompleter, jQuery object with one element with INPUT or TEXTAREA tag expected.");var r=this;this.options=n,this.cacheData_={},this.cacheLength_=0,this.selectClass_="jquery-autocomplete-selected-item",this.keyTimeout_=null,this.finishTimeout_=null,this.lastKeyPressed_=null,this.lastProcessedValue_=null,this.lastSelectedValue_=null,this.active_=!1,this.finishOnBlur_=!0,this.options.minChars=i(this.options.minChars,t.fn.autocomplete_verheul.defaults.minChars,{min:0}),this.options.maxItemsToShow=i(this.options.maxItemsToShow,t.fn.autocomplete_verheul.defaults.maxItemsToShow,{min:0}),this.options.maxCacheLength=i(this.options.maxCacheLength,t.fn.autocomplete_verheul.defaults.maxCacheLength,{min:1}),this.options.delay=i(this.options.delay,t.fn.autocomplete_verheul.defaults.delay,{min:0}),2!=this.options.preventDefaultReturn&&(this.options.preventDefaultReturn=this.options.preventDefaultReturn?1:0),2!=this.options.preventDefaultTab&&(this.options.preventDefaultTab=this.options.preventDefaultTab?1:0),this.dom={},this.dom.$elem=e,this.dom.$elem.attr("autocomplete","off").addClass(this.options.inputClass),this.dom.$results=t("<div></div>").hide().addClass(this.options.resultsClass).css({position:"absolute"}),t("body").append(this.dom.$results),e.keydown(function(t){switch(r.lastKeyPressed_=t.keyCode,r.lastKeyPressed_){case r.options.delimiterKeyCode:r.options.useDelimiter&&r.active_&&r.selectCurrent();break;case 35:case 36:case 16:case 17:case 18:case 37:case 39:break;case 38:return t.preventDefault(),r.active_?r.focusPrev():r.activate(),!1;case 40:return t.preventDefault(),r.active_?r.focusNext():r.activate(),!1;case 9:if(r.active_&&(r.selectCurrent(),r.options.preventDefaultTab))return t.preventDefault(),!1;if(2===r.options.preventDefaultTab)return t.preventDefault(),!1;break;case 13:if(r.active_&&(r.selectCurrent(),r.options.preventDefaultReturn))return t.preventDefault(),!1;if(2===r.options.preventDefaultReturn)return t.preventDefault(),!1;break;case 27:if(r.active_)return t.preventDefault(),r.deactivate(!0),!1;break;default:r.activate()}}),e.on("paste",function(){r.activate()});var a=function(){r.deactivate(!0)};e.blur(function(){r.finishOnBlur_&&(r.finishTimeout_=setTimeout(a,200))}),e.parents("form").on("submit",a)},t.Autocompleter.prototype.position=function(){var e=this.dom.$elem.offset(),i=this.dom.$results.outerHeight(),n=t(window).outerHeight(),r=e.top+this.dom.$elem.outerHeight(),a=r+i,o={top:r,left:e.left};if(a>n){var s=e.top-i;s>=0&&(o.top=s)}this.dom.$results.css(o)},t.Autocompleter.prototype.cacheRead=function(t){var e,i,n,r,a;if(this.options.useCache)for(t=String(t),e=t.length,i=this.options.matchSubset?1:e;i<=e;){for(r=this.options.matchInside?e-i:0,a=0;a<=r;){if(n=t.substr(0,i),void 0!==this.cacheData_[n])return this.cacheData_[n];a++}i++}return!1},t.Autocompleter.prototype.cacheWrite=function(t,e){return!!this.options.useCache&&(this.cacheLength_>=this.options.maxCacheLength&&this.cacheFlush(),t=String(t),void 0!==this.cacheData_[t]&&this.cacheLength_++,this.cacheData_[t]=e,this.cacheData_[t])},t.Autocompleter.prototype.cacheFlush=function(){this.cacheData_={},this.cacheLength_=0},t.Autocompleter.prototype.callHook=function(e,i){var n=this.options[e];return!(!n||!t.isFunction(n))&&n(i,this)},t.Autocompleter.prototype.activate=function(){if(this.options.enabled){var t=this;this.keyTimeout_&&clearTimeout(this.keyTimeout_),this.keyTimeout_=setTimeout(function(){t.activateNow()},this.options.delay)}},t.Autocompleter.prototype.activateNow=function(){var t=this.beforeUseConverter(this.dom.$elem.val());t!==this.lastProcessedValue_&&t!==this.lastSelectedValue_&&this.fetchData(t)},t.Autocompleter.prototype.fetchData=function(t){var e=this,i=function(t,i){e.options.processData&&(t=e.options.processData(t)),e.showResults(e.filterResults(t,i),i)};this.lastProcessedValue_=t,t.length<this.options.minChars?i([],t):this.options.data?i(this.options.data,t):this.fetchRemoteData(t,function(e){i(e,t)})},t.Autocompleter.prototype.fetchRemoteData=function(e,i){var n=this.cacheRead(e);if(n)i(n);else{var r=this,a="json"===r.options.remoteDataType?"json":"text",o=function(t){var n=!1;!1!==t&&(n=r.parseRemoteData(t),r.cacheWrite(e,n)),r.dom.$elem.removeClass(r.options.loadingClass),i(n)};this.dom.$elem.addClass(this.options.loadingClass),t.ajax({url:this.makeUrl(e),success:o,error:function(e,i,n){t.isFunction(r.options.onError)?r.options.onError(e,i,n):o(!1)},dataType:a})}},t.Autocompleter.prototype.setExtraParam=function(e,i){var n=t.trim(String(e));return n&&(this.options.extraParams||(this.options.extraParams={}),this.options.extraParams[n]!==i&&(this.options.extraParams[n]=i,this.cacheFlush())),this},t.Autocompleter.prototype.makeUrl=function(e){var i=this.options.url,n=t.extend({},this.options.extraParams);return!1===this.options.queryParamName?i+=encodeURIComponent(e):n[this.options.queryParamName]=e,r(i,n)},t.Autocompleter.prototype.parseRemoteData=function(e){var i,n=e;if("json"===this.options.remoteDataType){switch(i=typeof e){case"object":n=e;break;case"string":n=t.parseJSON(e);break;default:throw new Error("Unexpected remote data type: "+i)}return n}return o(n,this.options.lineSeparator,this.options.cellSeparator)},t.Autocompleter.prototype.defaultFilter=function(t,e){if(!t.value)return!1;if(this.options.filterResults){var i=this.matchStringConverter(e),n=this.matchStringConverter(t.value);this.options.matchCase||(i=i.toLowerCase(),n=n.toLowerCase());var r=n.indexOf(i);return this.options.matchInside?r>-1:0===r}return!0},t.Autocompleter.prototype.filterResult=function(e,i){return!1===this.options.filter||(t.isFunction(this.options.filter)?this.options.filter(e,i):this.defaultFilter(e,i))},t.Autocompleter.prototype.filterResults=function(t,i){var n,r,a=[];for(n=0;n<t.length;n++)r=e(t[n]),this.filterResult(r,i)&&a.push(r);return this.options.sortResults&&(a=this.sortResults(a,i)),this.options.maxItemsToShow>0&&this.options.maxItemsToShow<a.length&&(a.length=this.options.maxItemsToShow),a},t.Autocompleter.prototype.sortResults=function(e,i){var n=this,r=this.options.sortFunction;return t.isFunction(r)||(r=function(t,e,i){return a(t,e,n.options.matchCase)}),e.sort(function(t,e){return r(t,e,i,n.options)}),e},t.Autocompleter.prototype.matchStringConverter=function(e,i,n){var r=this.options.matchStringConverter;return t.isFunction(r)&&(e=r(e,i,n)),e},t.Autocompleter.prototype.beforeUseConverter=function(e){e=this.getValue(e);var i=this.options.beforeUseConverter;return t.isFunction(i)&&(e=i(e)),e},t.Autocompleter.prototype.enableFinishOnBlur=function(){this.finishOnBlur_=!0},t.Autocompleter.prototype.disableFinishOnBlur=function(){this.finishOnBlur_=!1},t.Autocompleter.prototype.createItemFromResult=function(e){var i=this,n=t("<li/>");return n.html(this.showResult(e.value,e.data)),n.data({value:e.value,data:e.data}).click(function(){i.selectItem(n)}).mousedown(i.disableFinishOnBlur).mouseup(i.enableFinishOnBlur),n},t.Autocompleter.prototype.getItems=function(){return t(">ul>li",this.dom.$results)},t.Autocompleter.prototype.showResults=function(e,i){var n,r,a,o,s=e.length,l=this,c=t("<ul></ul>"),u=!1,h=!1;if(s){for(n=0;n<s;n++)r=e[n],a=this.createItemFromResult(r),c.append(a),!1===u&&(u=String(r.value),h=a,a.addClass(this.options.firstItemClass)),n===s-1&&a.addClass(this.options.lastItemClass);this.dom.$results.html(c).show(),this.position(),this.options.autoWidth&&(o=this.dom.$elem.outerWidth()-this.dom.$results.outerWidth()+this.dom.$results.width(),this.dom.$results.css(this.options.autoWidth,o)),this.getItems().hover(function(){l.focusItem(this)},function(){}),(this.autoFill(u,i)||this.options.selectFirst||this.options.selectOnly&&1===s)&&this.focusItem(h),this.active_=!0}else this.hideResults(),this.active_=!1},t.Autocompleter.prototype.showResult=function(e,i){return t.isFunction(this.options.showResult)?this.options.showResult(e,i):t("<p></p>").text(e).html()},t.Autocompleter.prototype.autoFill=function(t,e){var i,n,r,a;if(this.options.autoFill&&8!==this.lastKeyPressed_&&(i=String(t).toLowerCase(),n=String(e).toLowerCase(),r=t.length,a=e.length,i.substr(0,a)===n)){var o=this.getDelimiterOffsets(),s=o.start?" 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e=t.data("value"),i=t.data("data"),n=this.displayValue(e,i),r=this.beforeUseConverter(n);this.lastProcessedValue_=r,this.lastSelectedValue_=r;var a=this.getDelimiterOffsets(),o=this.options.delimiterChar,s=this.dom.$elem,l=0;this.options.useDelimiter&&(s.val().substring(a.start-1,a.start)==o&&" "!=o&&(n=" "+n),s.val().substring(a.end,a.end+1)!=o&&this.lastKeyPressed_!=this.options.delimiterKeyCode?n+=o:l=1),this.setValue(n),this.setCaret(a.start+n.length+l),this.callHook("onItemSelect",{value:e,data:i}),this.deactivate(!0),s.focus()},t.Autocompleter.prototype.displayValue=function(e,i){return t.isFunction(this.options.displayValue)?this.options.displayValue(e,i):e},t.Autocompleter.prototype.hideResults=function(){this.dom.$results.hide()},t.Autocompleter.prototype.deactivate=function(t){this.finishTimeout_&&clearTimeout(this.finishTimeout_),this.keyTimeout_&&clearTimeout(this.keyTimeout_),t&&(this.lastProcessedValue_!==this.lastSelectedValue_&&(this.options.mustMatch&&this.setValue(""),this.callHook("onNoMatch")),this.active_&&this.callHook("onFinish"),this.lastKeyPressed_=null,this.lastProcessedValue_=null,this.lastSelectedValue_=null,this.active_=!1),this.hideResults()},t.Autocompleter.prototype.selectRange=function(t,e){var i=this.dom.$elem.get(0);if(i.setSelectionRange)i.focus(),i.setSelectionRange(t,e);else if(i.createTextRange){var n=i.createTextRange();n.collapse(!0),n.moveEnd("character",e),n.moveStart("character",t),n.select()}},t.Autocompleter.prototype.setCaret=function(t){this.selectRange(t,t)},t.Autocompleter.prototype.getCaret=function(){var t,e,i,n,r,a,o=this.dom.$elem,s=o[0];return s.createTextRange?(e=document.selection,"textarea"!=s.tagName.toLowerCase()?(t=o.val(),i=e.createRange().duplicate(),i.moveEnd("character",t.length),n=""===i.text?t.length:t.lastIndexOf(i.text),i=e.createRange().duplicate(),i.moveStart("character",-t.length),r=i.text.length):(i=e.createRange(),a=i.duplicate(),a.moveToElementText(s),a.setEndPoint("EndToEnd",i),n=a.text.length-i.text.length,r=n+i.text.length)):(n=o[0].selectionStart,r=o[0].selectionEnd),{start:n,end:r}},t.Autocompleter.prototype.setValue=function(t){if(this.options.useDelimiter){var e=this.dom.$elem.val(),i=this.getDelimiterOffsets();t=e.substring(0,i.start)+t+e.substring(i.end)}this.dom.$elem.val(t)},t.Autocompleter.prototype.getValue=function(t){if(this.options.useDelimiter){var e=this.getDelimiterOffsets();return t.substring(e.start,e.end).trim()}return t},t.Autocompleter.prototype.getDelimiterOffsets=function(){var t=this.dom.$elem.val();if(this.options.useDelimiter){var e=t.substring(0,this.getCaret().start),i=e.lastIndexOf(this.options.delimiterChar)+1,n=t.substring(this.getCaret().start),r=n.indexOf(this.options.delimiterChar);-1==r&&(r=t.length),r+=this.getCaret().start}else i=0,r=t.length;return{start:i,end:r}}}(t)}).call(e,i(0))},function(t,e,i){var n,r,a;!function(o,s,l){!function(o){r=[i(0)],n=o,void 0!==(a="function"==typeof n?n.apply(e,r):n)&&(t.exports=a)}(function(t){"use strict";var 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$(t,e,i,n)};else{if(!o.namespaces||o.namespaces.v)return t.fn.sparkline.canvas=!1,!1;o.namespaces.add("v","urn:schemas-microsoft-com:vml","#default#VML"),t.fn.sparkline.canvas=function(t,e,i,n){return new j(t,e,i)}}}return void 0===e&&(e=t(this).innerWidth()),void 0===i&&(i=t(this).innerHeight()),a=t.fn.sparkline.canvas(e,i,this,r),s=t(this).data("_jqs_mhandler"),s&&s.registerCanvas(a),a},t.fn.cleardraw=function(){var t=this.data("_jqs_vcanvas");t&&t.reset()},t.RangeMapClass=v=i({init:function(t){var e,i,n=[];for(e in t)t.hasOwnProperty(e)&&"string"==typeof e&&e.indexOf(":")>-1&&(i=e.split(":"),i[0]=0===i[0].length?-1/0:parseFloat(i[0]),i[1]=0===i[1].length?1/0:parseFloat(i[1]),i[2]=t[e],n.push(i));this.map=t,this.rangelist=n||!1},get:function(t){var e,i,n,r=this.rangelist;if(void 0!==(n=this.map[t]))return n;if(r)for(e=r.length;e--;)if(i=r[e],i[0]<=t&&i[1]>=t)return i[2]}}),t.range_map=function(t){return new v(t)},g=i({init:function(e,i){var n=t(e);this.$el=n,this.options=i,this.currentPageX=0,this.currentPageY=0,this.el=e,this.splist=[],this.tooltip=null,this.over=!1,this.displayTooltips=!i.get("disableTooltips"),this.highlightEnabled=!i.get("disableHighlight")},registerSparkline:function(t){this.splist.push(t),this.over&&this.updateDisplay()},registerCanvas:function(e){var i=t(e.canvas);this.canvas=e,this.$canvas=i,i.mouseenter(t.proxy(this.mouseenter,this)),i.mouseleave(t.proxy(this.mouseleave,this)),i.click(t.proxy(this.mouseclick,this))},reset:function(t){this.splist=[],this.tooltip&&t&&(this.tooltip.remove(),this.tooltip=void 0)},mouseclick:function(e){var i=t.Event("sparklineClick");i.originalEvent=e,i.sparklines=this.splist,this.$el.trigger(i)},mouseenter:function(e){t(o.body).unbind("mousemove.jqs"),t(o.body).bind("mousemove.jqs",t.proxy(this.mousemove,this)),this.over=!0,this.currentPageX=e.pageX,this.currentPageY=e.pageY,this.currentEl=e.target,!this.tooltip&&this.displayTooltips&&(this.tooltip=new _(this.options),this.tooltip.updatePosition(e.pageX,e.pageY)),this.updateDisplay()},mouseleave:function(){t(o.body).unbind("mousemove.jqs");var e,i,n=this.splist,r=n.length,a=!1;for(this.over=!1,this.currentEl=null,this.tooltip&&(this.tooltip.remove(),this.tooltip=null),i=0;i<r;i++)e=n[i],e.clearRegionHighlight()&&(a=!0);a&&this.canvas.render()},mousemove:function(t){this.currentPageX=t.pageX,this.currentPageY=t.pageY,this.currentEl=t.target,this.tooltip&&this.tooltip.updatePosition(t.pageX,t.pageY),this.updateDisplay()},updateDisplay:function(){var e,i,n,r,a,o=this.splist,s=o.length,l=!1,c=this.$canvas.offset(),u=this.currentPageX-c.left,h=this.currentPageY-c.top;if(this.over){for(n=0;n<s;n++)i=o[n],(r=i.setRegionHighlight(this.currentEl,u,h))&&(l=!0);if(l){if(a=t.Event("sparklineRegionChange"),a.sparklines=this.splist,this.$el.trigger(a),this.tooltip){for(e="",n=0;n<s;n++)i=o[n],e+=i.getCurrentRegionTooltip();this.tooltip.setContent(e)}this.disableHighlight||this.canvas.render()}null===r&&this.mouseleave()}}}),_=i({sizeStyle:"position: static !important;display: block !important;visibility: hidden !important;float: left !important;",init:function(e){var i,n=e.get("tooltipClassname","jqstooltip"),r=this.sizeStyle;this.container=e.get("tooltipContainer")||o.body,this.tooltipOffsetX=e.get("tooltipOffsetX",10),this.tooltipOffsetY=e.get("tooltipOffsetY",12),t("#jqssizetip").remove(),t("#jqstooltip").remove(),this.sizetip=t("<div/>",{id:"jqssizetip",style:r,class:n}),this.tooltip=t("<div/>",{id:"jqstooltip",class:n}).appendTo(this.container),i=this.tooltip.offset(),this.offsetLeft=i.left,this.offsetTop=i.top,this.hidden=!0,t(window).unbind("resize.jqs scroll.jqs"),t(window).bind("resize.jqs scroll.jqs",t.proxy(this.updateWindowDims,this)),this.updateWindowDims()},updateWindowDims:function(){this.scrollTop=t(window).scrollTop(),this.scrollLeft=t(window).scrollLeft(),this.scrollRight=this.scrollLeft+t(window).width(),this.updatePosition()},getSize:function(t){this.sizetip.html(t).appendTo(this.container),this.width=this.sizetip.width()+1,this.height=this.sizetip.height(),this.sizetip.remove()},setContent:function(t){if(!t)return this.tooltip.css("visibility","hidden"),void(this.hidden=!0);this.getSize(t),this.tooltip.html(t).css({width:this.width,height:this.height,visibility:"visible"}),this.hidden&&(this.hidden=!1,this.updatePosition())},updatePosition:function(t,e){if(void 0===t){if(void 0===this.mousex)return;t=this.mousex-this.offsetLeft,e=this.mousey-this.offsetTop}else this.mousex=t-=this.offsetLeft,this.mousey=e-=this.offsetTop;this.height&&this.width&&!this.hidden&&(e-=this.height+this.tooltipOffsetY,t+=this.tooltipOffsetX,e<this.scrollTop&&(e=this.scrollTop),t<this.scrollLeft?t=this.scrollLeft:t+this.width>this.scrollRight&&(t=this.scrollRight-this.width),this.tooltip.css({left:t,top:e}))},remove:function(){this.tooltip.remove(),this.sizetip.remove(),this.sizetip=this.tooltip=void 0,t(window).unbind("resize.jqs scroll.jqs")}}),M=function(){f(A)},t(M),D=[],t.fn.sparkline=function(e,i){return this.each(function(){var n,r,a=new t.fn.sparkline.options(this,i),s=t(this);if(n=function(){var i,n,r,l,c,u,h;if("html"===e||void 0===e?(h=this.getAttribute(a.get("tagValuesAttribute")),void 0!==h&&null!==h||(h=s.html()),i=h.replace(/(^\s*<!--)|(-->\s*$)|\s+/g,"").split(",")):i=e,n="auto"===a.get("width")?i.length*a.get("defaultPixelsPerValue"):a.get("width"),"auto"===a.get("height")?a.get("composite")&&t.data(this,"_jqs_vcanvas")||(l=o.createElement("span"),l.innerHTML="a",s.html(l),r=t(l).innerHeight()||t(l).height(),t(l).remove(),l=null):r=a.get("height"),a.get("disableInteraction")?c=!1:(c=t.data(this,"_jqs_mhandler"),c?a.get("composite")||c.reset():(c=new g(this,a),t.data(this,"_jqs_mhandler",c))),a.get("composite")&&!t.data(this,"_jqs_vcanvas"))return void(t.data(this,"_jqs_errnotify")||(alert("Attempted to attach a composite sparkline to an element with no existing sparkline"),t.data(this,"_jqs_errnotify",!0)));u=new(t.fn.sparkline[a.get("type")])(this,i,a,n,r),u.render(),c&&c.registerSparkline(u)},t(this).html()&&!a.get("disableHiddenCheck")&&t(this).is(":hidden")||!t(this).parents("body").length){if(!a.get("composite")&&t.data(this,"_jqs_pending"))for(r=D.length;r;r--)D[r-1][0]==this&&D.splice(r-1,1);D.push([this,n]),t.data(this,"_jqs_pending",!0)}else n.call(this)})},t.fn.sparkline.defaults=e(),t.sparkline_display_visible=function(){var e,i,n,r=[];for(i=0,n=D.length;i<n;i++)e=D[i][0],t(e).is(":visible")&&!t(e).parents().is(":hidden")?(D[i][1].call(e),t.data(D[i][0],"_jqs_pending",!1),r.push(i)):t(e).closest("html").length||t.data(e,"_jqs_pending")||(t.data(D[i][0],"_jqs_pending",!1),r.push(i));for(i=r.length;i;i--)D.splice(r[i-1],1)},t.fn.sparkline.options=i({init:function(e,i){var n,r,a,o;this.userOptions=i=i||{},this.tag=e,this.tagValCache={},r=t.fn.sparkline.defaults,a=r.common,this.tagOptionsPrefix=i.enableTagOptions&&(i.tagOptionsPrefix||a.tagOptionsPrefix),o=this.getTagSetting("type"),n=o===P?r[i.type||a.type]:r[o],this.mergedOptions=t.extend({},a,n,i)},getTagSetting:function(t){var e,i,n,r,a=this.tagOptionsPrefix;if(!1===a||void 0===a)return P;if(this.tagValCache.hasOwnProperty(t))e=this.tagValCache.key;else{if(void 0===(e=this.tag.getAttribute(a+t))||null===e)e=P;else if("["===e.substr(0,1))for(e=e.substr(1,e.length-2).split(","),i=e.length;i--;)e[i]=l(e[i].replace(/(^\s*)|(\s*$)/g,""));else if("{"===e.substr(0,1))for(n=e.substr(1,e.length-2).split(","),e={},i=n.length;i--;)r=n[i].split(":",2),e[r[0].replace(/(^\s*)|(\s*$)/g,"")]=l(r[1].replace(/(^\s*)|(\s*$)/g,""));else e=l(e);this.tagValCache.key=e}return e},get:function(t,e){var i,n=this.getTagSetting(t);return n!==P?n:void 0===(i=this.mergedOptions[t])?e:i}}),t.fn.sparkline._base=i({disabled:!1,init:function(e,i,n,r,a){this.el=e,this.$el=t(e),this.values=i,this.options=n,this.width=r,this.height=a,this.currentRegion=void 0},initTarget:function(){var t=!this.options.get("disableInteraction");(this.target=this.$el.simpledraw(this.width,this.height,this.options.get("composite"),t))?(this.canvasWidth=this.target.pixelWidth,this.canvasHeight=this.target.pixelHeight):this.disabled=!0},render:function(){return!this.disabled||(this.el.innerHTML="",!1)},getRegion:function(t,e){},setRegionHighlight:function(t,e,i){var n,r=this.currentRegion,a=!this.options.get("disableHighlight");return e>this.canvasWidth||i>this.canvasHeight||e<0||i<0?null:(n=this.getRegion(t,e,i),r!==n&&(void 0!==r&&a&&this.removeHighlight(),this.currentRegion=n,void 0!==n&&a&&this.renderHighlight(),!0))},clearRegionHighlight:function(){return void 0!==this.currentRegion&&(this.removeHighlight(),this.currentRegion=void 0,!0)},renderHighlight:function(){this.changeHighlight(!0)},removeHighlight:function(){this.changeHighlight(!1)},changeHighlight:function(t){},getCurrentRegionTooltip:function(){var e,i,r,a,o,s,l,c,u,h,d,f,p,m,v=this.options,g="",_=[];if(void 0===this.currentRegion)return"";if(e=this.getCurrentRegionFields(),d=v.get("tooltipFormatter"))return d(this,v,e);if(v.get("tooltipChartTitle")&&(g+='<div class="jqs jqstitle">'+v.get("tooltipChartTitle")+"</div>\n"),!(i=this.options.get("tooltipFormat")))return"";if(t.isArray(i)||(i=[i]),t.isArray(e)||(e=[e]),l=this.options.get("tooltipFormatFieldlist"),c=this.options.get("tooltipFormatFieldlistKey"),l&&c){for(u=[],s=e.length;s--;)h=e[s][c],-1!=(m=t.inArray(h,l))&&(u[m]=e[s]);e=u}for(r=i.length,p=e.length,s=0;s<r;s++)for(f=i[s],"string"==typeof f&&(f=new n(f)),a=f.fclass||"jqsfield",m=0;m<p;m++)e[m].isNull&&v.get("tooltipSkipNull")||(t.extend(e[m],{prefix:v.get("tooltipPrefix"),suffix:v.get("tooltipSuffix")}),o=f.render(e[m],v.get("tooltipValueLookups"),v),_.push('<div class="'+a+'">'+o+"</div>"));return _.length?g+_.join("\n"):""},getCurrentRegionFields:function(){},calcHighlightColor:function(t,e){var i,n,a,o,l=e.get("highlightColor"),c=e.get("highlightLighten");if(l)return l;if(c&&(i=/^#([0-9a-f])([0-9a-f])([0-9a-f])$/i.exec(t)||/^#([0-9a-f]{2})([0-9a-f]{2})([0-9a-f]{2})$/i.exec(t))){for(a=[],n=4===t.length?16:1,o=0;o<3;o++)a[o]=r(s.round(parseInt(i[o+1],16)*n*c),0,255);return"rgb("+a.join(",")+")"}return t}}),y={changeHighlight:function(e){var i,n=this.currentRegion,r=this.target,a=this.regionShapes[n];a&&(i=this.renderRegion(n,e),t.isArray(i)||t.isArray(a)?(r.replaceWithShapes(a,i),this.regionShapes[n]=t.map(i,function(t){return t.id})):(r.replaceWithShape(a,i),this.regionShapes[n]=i.id))},render:function(){var e,i,n,r,a=this.values,o=this.target,s=this.regionShapes;if(this.cls._super.render.call(this)){for(n=a.length;n--;)if(e=this.renderRegion(n))if(t.isArray(e)){for(i=[],r=e.length;r--;)e[r].append(),i.push(e[r].id);s[n]=i}else e.append(),s[n]=e.id;else s[n]=null;o.render()}}},t.fn.sparkline.line=b=i(t.fn.sparkline._base,{type:"line",init:function(t,e,i,n,r){b._super.init.call(this,t,e,i,n,r),this.vertices=[],this.regionMap=[],this.xvalues=[],this.yvalues=[],this.yminmax=[],this.hightlightSpotId=null,this.lastShapeId=null,this.initTarget()},getRegion:function(t,e,i){var n,r=this.regionMap;for(n=r.length;n--;)if(null!==r[n]&&e>=r[n][0]&&e<=r[n][1])return r[n][2]},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:null===this.yvalues[t],x:this.xvalues[t],y:this.yvalues[t],color:this.options.get("lineColor"),fillColor:this.options.get("fillColor"),offset:t}},renderHighlight:function(){var t,e,i=this.currentRegion,n=this.target,r=this.vertices[i],a=this.options,o=a.get("spotRadius"),s=a.get("highlightSpotColor"),l=a.get("highlightLineColor");r&&(o&&s&&(t=n.drawCircle(r[0],r[1],o,void 0,s),this.highlightSpotId=t.id,n.insertAfterShape(this.lastShapeId,t)),l&&(e=n.drawLine(r[0],this.canvasTop,r[0],this.canvasTop+this.canvasHeight,l),this.highlightLineId=e.id,n.insertAfterShape(this.lastShapeId,e)))},removeHighlight:function(){var t=this.target;this.highlightSpotId&&(t.removeShapeId(this.highlightSpotId),this.highlightSpotId=null),this.highlightLineId&&(t.removeShapeId(this.highlightLineId),this.highlightLineId=null)},scanValues:function(){var t,e,i,n,r,a=this.values,o=a.length,l=this.xvalues,c=this.yvalues,u=this.yminmax;for(t=0;t<o;t++)e=a[t],i="string"==typeof a[t],n="object"==typeof a[t]&&a[t]instanceof Array,r=i&&a[t].split(":"),i&&2===r.length?(l.push(Number(r[0])),c.push(Number(r[1])),u.push(Number(r[1]))):n?(l.push(e[0]),c.push(e[1]),u.push(e[1])):(l.push(t),null===a[t]||"null"===a[t]?c.push(null):(c.push(Number(e)),u.push(Number(e))));this.options.get("xvalues")&&(l=this.options.get("xvalues")),this.maxy=this.maxyorg=s.max.apply(s,u),this.miny=this.minyorg=s.min.apply(s,u),this.maxx=s.max.apply(s,l),this.minx=s.min.apply(s,l),this.xvalues=l,this.yvalues=c,this.yminmax=u},processRangeOptions:function(){var t=this.options,e=t.get("normalRangeMin"),i=t.get("normalRangeMax");void 0!==e&&(e<this.miny&&(this.miny=e),i>this.maxy&&(this.maxy=i)),void 0!==t.get("chartRangeMin")&&(t.get("chartRangeClip")||t.get("chartRangeMin")<this.miny)&&(this.miny=t.get("chartRangeMin")),void 0!==t.get("chartRangeMax")&&(t.get("chartRangeClip")||t.get("chartRangeMax")>this.maxy)&&(this.maxy=t.get("chartRangeMax")),void 0!==t.get("chartRangeMinX")&&(t.get("chartRangeClipX")||t.get("chartRangeMinX")<this.minx)&&(this.minx=t.get("chartRangeMinX")),void 0!==t.get("chartRangeMaxX")&&(t.get("chartRangeClipX")||t.get("chartRangeMaxX")>this.maxx)&&(this.maxx=t.get("chartRangeMaxX"))},drawNormalRange:function(t,e,i,n,r){var a=this.options.get("normalRangeMin"),o=this.options.get("normalRangeMax"),l=e+s.round(i-i*((o-this.miny)/r)),c=s.round(i*(o-a)/r);this.target.drawRect(t,l,n,c,void 0,this.options.get("normalRangeColor")).append()},render:function(){var e,i,n,r,a,o,l,c,u,h,d,f,p,m,g,_,y,w,x,k,C,S,T,A,M,E=this.options,O=this.target,$=this.canvasWidth,j=this.canvasHeight,D=this.vertices,P=E.get("spotRadius"),R=this.regionMap;if(b._super.render.call(this)&&(this.scanValues(),this.processRangeOptions(),T=this.xvalues,A=this.yvalues,this.yminmax.length&&!(this.yvalues.length<2))){for(r=a=0,e=this.maxx-this.minx==0?1:this.maxx-this.minx,i=this.maxy-this.miny==0?1:this.maxy-this.miny,n=this.yvalues.length-1,P&&($<4*P||j<4*P)&&(P=0),P&&(C=E.get("highlightSpotColor")&&!E.get("disableInteraction"),(C||E.get("minSpotColor")||E.get("spotColor")&&A[n]===this.miny)&&(j-=s.ceil(P)),(C||E.get("maxSpotColor")||E.get("spotColor")&&A[n]===this.maxy)&&(j-=s.ceil(P),r+=s.ceil(P)),(C||(E.get("minSpotColor")||E.get("maxSpotColor"))&&(A[0]===this.miny||A[0]===this.maxy))&&(a+=s.ceil(P),$-=s.ceil(P)),(C||E.get("spotColor")||E.get("minSpotColor")||E.get("maxSpotColor")&&(A[n]===this.miny||A[n]===this.maxy))&&($-=s.ceil(P))),j--,void 0===E.get("normalRangeMin")||E.get("drawNormalOnTop")||this.drawNormalRange(a,r,j,$,i),l=[],c=[l],m=g=null,_=A.length,M=0;M<_;M++)u=T[M],d=T[M+1],h=A[M],f=a+s.round((u-this.minx)*($/e)),p=M<_-1?a+s.round((d-this.minx)*($/e)):$,g=f+(p-f)/2,R[M]=[m||0,g,M],m=g,null===h?M&&(null!==A[M-1]&&(l=[],c.push(l)),D.push(null)):(h<this.miny&&(h=this.miny),h>this.maxy&&(h=this.maxy),l.length||l.push([f,r+j]),o=[f,r+s.round(j-j*((h-this.miny)/i))],l.push(o),D.push(o));for(y=[],w=[],x=c.length,M=0;M<x;M++)l=c[M],l.length&&(E.get("fillColor")&&(l.push([l[l.length-1][0],r+j]),w.push(l.slice(0)),l.pop()),l.length>2&&(l[0]=[l[0][0],l[1][1]]),y.push(l));for(x=w.length,M=0;M<x;M++)O.drawShape(w[M],E.get("fillColor"),E.get("fillColor")).append();for(void 0!==E.get("normalRangeMin")&&E.get("drawNormalOnTop")&&this.drawNormalRange(a,r,j,$,i),x=y.length,M=0;M<x;M++)O.drawShape(y[M],E.get("lineColor"),void 0,E.get("lineWidth")).append();if(P&&E.get("valueSpots"))for(k=E.get("valueSpots"),void 0===k.get&&(k=new v(k)),M=0;M<_;M++)(S=k.get(A[M]))&&O.drawCircle(a+s.round((T[M]-this.minx)*($/e)),r+s.round(j-j*((A[M]-this.miny)/i)),P,void 0,S).append();P&&E.get("spotColor")&&null!==A[n]&&O.drawCircle(a+s.round((T[T.length-1]-this.minx)*($/e)),r+s.round(j-j*((A[n]-this.miny)/i)),P,void 0,E.get("spotColor")).append(),this.maxy!==this.minyorg&&(P&&E.get("minSpotColor")&&(u=T[t.inArray(this.minyorg,A)],O.drawCircle(a+s.round((u-this.minx)*($/e)),r+s.round(j-j*((this.minyorg-this.miny)/i)),P,void 0,E.get("minSpotColor")).append()),P&&E.get("maxSpotColor")&&(u=T[t.inArray(this.maxyorg,A)],O.drawCircle(a+s.round((u-this.minx)*($/e)),r+s.round(j-j*((this.maxyorg-this.miny)/i)),P,void 0,E.get("maxSpotColor")).append())),this.lastShapeId=O.getLastShapeId(),this.canvasTop=r,O.render()}}}),t.fn.sparkline.bar=w=i(t.fn.sparkline._base,y,{type:"bar",init:function(e,i,n,a,o){var h,d,f,p,m,g,_,y,b,x,k,C,S,T,A,M,E,O,$,j,D,P,R=parseInt(n.get("barWidth"),10),N=parseInt(n.get("barSpacing"),10),I=n.get("chartRangeMin"),L=n.get("chartRangeMax"),H=n.get("chartRangeClip"),q=1/0,z=-1/0;for(w._super.init.call(this,e,i,n,a,o),g=0,_=i.length;g<_;g++)j=i[g],((h="string"==typeof j&&j.indexOf(":")>-1)||t.isArray(j))&&(A=!0,h&&(j=i[g]=c(j.split(":"))),j=u(j,null),d=s.min.apply(s,j),f=s.max.apply(s,j),d<q&&(q=d),f>z&&(z=f));this.stacked=A,this.regionShapes={},this.barWidth=R,this.barSpacing=N,this.totalBarWidth=R+N,this.width=a=i.length*R+(i.length-1)*N,this.initTarget(),H&&(S=void 0===I?-1/0:I,T=void 0===L?1/0:L),m=[],p=A?[]:m;var F=[],B=[];for(g=0,_=i.length;g<_;g++)if(A)for(M=i[g],i[g]=$=[],F[g]=0,p[g]=B[g]=0,E=0,O=M.length;E<O;E++)null!==(j=$[E]=H?r(M[E],S,T):M[E])&&(j>0&&(F[g]+=j),q<0&&z>0?j<0?B[g]+=s.abs(j):p[g]+=j:p[g]+=s.abs(j-(j<0?z:q)),m.push(j));else j=H?r(i[g],S,T):i[g],null!==(j=i[g]=l(j))&&m.push(j);this.max=C=s.max.apply(s,m),this.min=k=s.min.apply(s,m),this.stackMax=z=A?s.max.apply(s,F):C,this.stackMin=q=A?s.min.apply(s,m):k,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<k)&&(k=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>C)&&(C=n.get("chartRangeMax")),this.zeroAxis=b=n.get("zeroAxis",!0),x=k<=0&&C>=0&&b?0:0==b?k:k>0?k:C,this.xaxisOffset=x,y=A?s.max.apply(s,p)+s.max.apply(s,B):C-k,this.canvasHeightEf=b&&k<0?this.canvasHeight-2:this.canvasHeight-1,k<x?(P=A&&C>=0?z:C,(D=(P-x)/y*this.canvasHeight)!==s.ceil(D)&&(this.canvasHeightEf-=2,D=s.ceil(D))):D=this.canvasHeight,this.yoffset=D,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new v(this.colorMapByValue))),this.range=y},getRegion:function(t,e,i){var n=s.floor(e/this.totalBarWidth);return n<0||n>=this.values.length?void 0:n},getCurrentRegionFields:function(){var t,e,i=this.currentRegion,n=p(this.values[i]),r=[];for(e=n.length;e--;)t=n[e],r.push({isNull:null===t,value:t,color:this.calcColor(e,t,i),offset:i});return r},calcColor:function(e,i,n){var r,a,o=this.colorMapByIndex,s=this.colorMapByValue,l=this.options;return r=this.stacked?l.get("stackedBarColor"):i<0?l.get("negBarColor"):l.get("barColor"),0===i&&void 0!==l.get("zeroColor")&&(r=l.get("zeroColor")),s&&(a=s.get(i))?r=a:o&&o.length>n&&(r=o[n]),t.isArray(r)?r[e%r.length]:r},renderRegion:function(e,i){var n,r,a,o,l,c,u,h,f,p,m=this.values[e],v=this.options,g=this.xaxisOffset,_=[],y=this.range,b=this.stacked,w=this.target,x=e*this.totalBarWidth,k=this.canvasHeightEf,C=this.yoffset;if(m=t.isArray(m)?m:[m],u=m.length,h=m[0],o=d(null,m),p=d(g,m,!0),o)return v.get("nullColor")?(a=i?v.get("nullColor"):this.calcHighlightColor(v.get("nullColor"),v),n=C>0?C-1:C,w.drawRect(x,n,this.barWidth-1,0,a,a)):void 0;for(l=C,c=0;c<u;c++){if(h=m[c],b&&h===g){if(!p||f)continue;f=!0}r=y>0?s.floor(k*(s.abs(h-g)/y))+1:1,h<g||h===g&&0===C?(n=l,l+=r):(n=C-r,C-=r),a=this.calcColor(c,h,e),i&&(a=this.calcHighlightColor(a,v)),_.push(w.drawRect(x,n,this.barWidth-1,r-1,a,a))}return 1===_.length?_[0]:_}}),t.fn.sparkline.tristate=x=i(t.fn.sparkline._base,y,{type:"tristate",init:function(e,i,n,r,a){var o=parseInt(n.get("barWidth"),10),s=parseInt(n.get("barSpacing"),10);x._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.barWidth=o,this.barSpacing=s,this.totalBarWidth=o+s,this.values=t.map(i,Number),this.width=r=i.length*o+(i.length-1)*s,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new v(this.colorMapByValue))),this.initTarget()},getRegion:function(t,e,i){return s.floor(e/this.totalBarWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],color:this.calcColor(this.values[t],t),offset:t}},calcColor:function(t,e){var i,n=this.values,r=this.options,a=this.colorMapByIndex,o=this.colorMapByValue;return o&&(i=o.get(t))?i:a&&a.length>e?a[e]:n[e]<0?r.get("negBarColor"):n[e]>0?r.get("posBarColor"):r.get("zeroBarColor")},renderRegion:function(t,e){var i,n,r,a,o,l,c=this.values,u=this.options,h=this.target;if(i=h.pixelHeight,r=s.round(i/2),a=t*this.totalBarWidth,c[t]<0?(o=r,n=r-1):c[t]>0?(o=0,n=r-1):(o=r-1,n=2),null!==(l=this.calcColor(c[t],t)))return e&&(l=this.calcHighlightColor(l,u)),h.drawRect(a,o,this.barWidth-1,n-1,l,l)}}),t.fn.sparkline.discrete=k=i(t.fn.sparkline._base,y,{type:"discrete",init:function(e,i,n,r,a){k._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.values=i=t.map(i,Number),this.min=s.min.apply(s,i),this.max=s.max.apply(s,i),this.range=this.max-this.min,this.width=r="auto"===n.get("width")?2*i.length:this.width,this.interval=s.floor(r/i.length),this.itemWidth=r/i.length,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<this.min)&&(this.min=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>this.max)&&(this.max=n.get("chartRangeMax")),this.initTarget(),this.target&&(this.lineHeight="auto"===n.get("lineHeight")?s.round(.3*this.canvasHeight):n.get("lineHeight"))},getRegion:function(t,e,i){return s.floor(e/this.itemWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],offset:t}},renderRegion:function(t,e){var i,n,a,o,l=this.values,c=this.options,u=this.min,h=this.max,d=this.range,f=this.interval,p=this.target,m=this.canvasHeight,v=this.lineHeight,g=m-v;return n=r(l[t],u,h),o=t*f,i=s.round(g-g*((n-u)/d)),a=c.get("thresholdColor")&&n<c.get("thresholdValue")?c.get("thresholdColor"):c.get("lineColor"),e&&(a=this.calcHighlightColor(a,c)),p.drawLine(o,i,o,i+v,a)}}),t.fn.sparkline.bullet=C=i(t.fn.sparkline._base,{type:"bullet",init:function(t,e,i,n,r){var a,o,l;C._super.init.call(this,t,e,i,n,r),this.values=e=c(e),l=e.slice(),l[0]=null===l[0]?l[2]:l[0],l[1]=null===e[1]?l[2]:l[1],a=s.min.apply(s,e),o=s.max.apply(s,e),a=void 0===i.get("base")?a<0?a:0:i.get("base"),this.min=a,this.max=o,this.range=o-a,this.shapes={},this.valueShapes={},this.regiondata={},this.width=n="auto"===i.get("width")?"4.0em":n,this.target=this.$el.simpledraw(n,r,i.get("composite")),e.length||(this.disabled=!0),this.initTarget()},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{fieldkey:t.substr(0,1),value:this.values[t.substr(1)],region:t}},changeHighlight:function(t){var e,i=this.currentRegion,n=this.valueShapes[i];switch(delete this.shapes[n],i.substr(0,1)){case"r":e=this.renderRange(i.substr(1),t);break;case"p":e=this.renderPerformance(t);break;case"t":e=this.renderTarget(t)}this.valueShapes[i]=e.id,this.shapes[e.id]=i,this.target.replaceWithShape(n,e)},renderRange:function(t,e){var i=this.values[t],n=s.round(this.canvasWidth*((i-this.min)/this.range)),r=this.options.get("rangeColors")[t-2];return e&&(r=this.calcHighlightColor(r,this.options)),this.target.drawRect(0,0,n-1,this.canvasHeight-1,r,r)},renderPerformance:function(t){var e=this.values[1],i=s.round(this.canvasWidth*((e-this.min)/this.range)),n=this.options.get("performanceColor");return t&&(n=this.calcHighlightColor(n,this.options)),this.target.drawRect(0,s.round(.3*this.canvasHeight),i-1,s.round(.4*this.canvasHeight)-1,n,n)},renderTarget:function(t){var e=this.values[0],i=s.round(this.canvasWidth*((e-this.min)/this.range)-this.options.get("targetWidth")/2),n=s.round(.1*this.canvasHeight),r=this.canvasHeight-2*n,a=this.options.get("targetColor");return t&&(a=this.calcHighlightColor(a,this.options)),this.target.drawRect(i,n,this.options.get("targetWidth")-1,r-1,a,a)},render:function(){var t,e,i=this.values.length,n=this.target;if(C._super.render.call(this)){for(t=2;t<i;t++)e=this.renderRange(t).append(),this.shapes[e.id]="r"+t,this.valueShapes["r"+t]=e.id;null!==this.values[1]&&(e=this.renderPerformance().append(),this.shapes[e.id]="p1",this.valueShapes.p1=e.id),null!==this.values[0]&&(e=this.renderTarget().append(),this.shapes[e.id]="t0",this.valueShapes.t0=e.id),n.render()}}}),t.fn.sparkline.pie=S=i(t.fn.sparkline._base,{type:"pie",init:function(e,i,n,r,a){var o,l=0;if(S._super.init.call(this,e,i,n,r,a),this.shapes={},this.valueShapes={},this.values=i=t.map(i,Number),"auto"===n.get("width")&&(this.width=this.height),i.length>0)for(o=i.length;o--;)l+=i[o];this.total=l,this.initTarget(),this.radius=s.floor(s.min(this.canvasWidth,this.canvasHeight)/2)},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],percent:this.values[t]/this.total*100,color:this.options.get("sliceColors")[t%this.options.get("sliceColors").length],offset:t}},changeHighlight:function(t){var e=this.currentRegion,i=this.renderSlice(e,t),n=this.valueShapes[e];delete this.shapes[n],this.target.replaceWithShape(n,i),this.valueShapes[e]=i.id,this.shapes[i.id]=e},renderSlice:function(t,e){var i,n,r,a,o,l=this.target,c=this.options,u=this.radius,h=c.get("borderWidth"),d=c.get("offset"),f=2*s.PI,p=this.values,m=this.total,v=d?2*s.PI*(d/360):0;for(a=p.length,r=0;r<a;r++){if(i=v,n=v,m>0&&(n=v+f*(p[r]/m)),t===r)return o=c.get("sliceColors")[r%c.get("sliceColors").length],e&&(o=this.calcHighlightColor(o,c)),l.drawPieSlice(u,u,u-h,i,n,void 0,o);v=n}},render:function(){var t,e,i=this.target,n=this.values,r=this.options,a=this.radius,o=r.get("borderWidth");if(S._super.render.call(this)){for(o&&i.drawCircle(a,a,s.floor(a-o/2),r.get("borderColor"),void 0,o).append(),e=n.length;e--;)n[e]&&(t=this.renderSlice(e).append(),this.valueShapes[e]=t.id,this.shapes[t.id]=e);i.render()}}}),t.fn.sparkline.box=T=i(t.fn.sparkline._base,{type:"box",init:function(e,i,n,r,a){T._super.init.call(this,e,i,n,r,a),this.values=t.map(i,Number),this.width="auto"===n.get("width")?"4.0em":r,this.initTarget(),this.values.length||(this.disabled=1)},getRegion:function(){return 1},getCurrentRegionFields:function(){var t=[{field:"lq",value:this.quartiles[0]},{field:"med",value:this.quartiles[1]},{field:"uq",value:this.quartiles[2]}];return void 0!==this.loutlier&&t.push({field:"lo",value:this.loutlier}),void 0!==this.routlier&&t.push({field:"ro",value:this.routlier}),void 0!==this.lwhisker&&t.push({field:"lw",value:this.lwhisker}),void 0!==this.rwhisker&&t.push({field:"rw",value:this.rwhisker}),t},render:function(){var t,e,i,n,r,o,l,c,u,h,d,f=this.target,p=this.values,m=p.length,v=this.options,g=this.canvasWidth,_=this.canvasHeight,y=void 0===v.get("chartRangeMin")?s.min.apply(s,p):v.get("chartRangeMin"),b=void 0===v.get("chartRangeMax")?s.max.apply(s,p):v.get("chartRangeMax"),w=0;if(T._super.render.call(this)){if(v.get("raw"))v.get("showOutliers")&&p.length>5?(e=p[0],t=p[1],n=p[2],r=p[3],o=p[4],l=p[5],c=p[6]):(t=p[0],n=p[1],r=p[2],o=p[3],l=p[4]);else if(p.sort(function(t,e){return t-e}),n=a(p,1),r=a(p,2),o=a(p,3),i=o-n,v.get("showOutliers")){for(t=l=void 0,u=0;u<m;u++)void 0===t&&p[u]>n-i*v.get("outlierIQR")&&(t=p[u]),p[u]<o+i*v.get("outlierIQR")&&(l=p[u]);e=p[0],c=p[m-1]}else t=p[0],l=p[m-1];this.quartiles=[n,r,o],this.lwhisker=t,this.rwhisker=l,this.loutlier=e,this.routlier=c,d=g/(b-y+1),v.get("showOutliers")&&(w=s.ceil(v.get("spotRadius")),g-=2*s.ceil(v.get("spotRadius")),d=g/(b-y+1),e<t&&f.drawCircle((e-y)*d+w,_/2,v.get("spotRadius"),v.get("outlierLineColor"),v.get("outlierFillColor")).append(),c>l&&f.drawCircle((c-y)*d+w,_/2,v.get("spotRadius"),v.get("outlierLineColor"),v.get("outlierFillColor")).append()),f.drawRect(s.round((n-y)*d+w),s.round(.1*_),s.round((o-n)*d),s.round(.8*_),v.get("boxLineColor"),v.get("boxFillColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/2),s.round((n-y)*d+w),s.round(_/2),v.get("lineColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/4),s.round((t-y)*d+w),s.round(_-_/4),v.get("whiskerColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/2),s.round((o-y)*d+w),s.round(_/2),v.get("lineColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/4),s.round((l-y)*d+w),s.round(_-_/4),v.get("whiskerColor")).append(),f.drawLine(s.round((r-y)*d+w),s.round(.1*_),s.round((r-y)*d+w),s.round(.9*_),v.get("medianColor")).append(),v.get("target")&&(h=s.ceil(v.get("spotRadius")),f.drawLine(s.round((v.get("target")-y)*d+w),s.round(_/2-h),s.round((v.get("target")-y)*d+w),s.round(_/2+h),v.get("targetColor")).append(),f.drawLine(s.round((v.get("target")-y)*d+w-h),s.round(_/2),s.round((v.get("target")-y)*d+w+h),s.round(_/2),v.get("targetColor")).append()),f.render()}}}),E=i({init:function(t,e,i,n){this.target=t,this.id=e,this.type=i,this.args=n},append:function(){return this.target.appendShape(this),this}}),O=i({_pxregex:/(\d+)(px)?\s*$/i,init:function(e,i,n){e&&(this.width=e,this.height=i,this.target=n,this.lastShapeId=null,n[0]&&(n=n[0]),t.data(n,"_jqs_vcanvas",this))},drawLine:function(t,e,i,n,r,a){return this.drawShape([[t,e],[i,n]],r,a)},drawShape:function(t,e,i,n){return this._genShape("Shape",[t,e,i,n])},drawCircle:function(t,e,i,n,r,a){return this._genShape("Circle",[t,e,i,n,r,a])},drawPieSlice:function(t,e,i,n,r,a,o){return this._genShape("PieSlice",[t,e,i,n,r,a,o])},drawRect:function(t,e,i,n,r,a){return this._genShape("Rect",[t,e,i,n,r,a])},getElement:function(){return this.canvas},getLastShapeId:function(){return this.lastShapeId},reset:function(){alert("reset not implemented")},_insert:function(e,i){t(i).html(e)},_calculatePixelDims:function(e,i,n){var r;r=this._pxregex.exec(i),this.pixelHeight=r?r[1]:t(n).height(),r=this._pxregex.exec(e),this.pixelWidth=r?r[1]:t(n).width()},_genShape:function(t,e){var i=R++;return e.unshift(i),new 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Are you sure?":"これは永久にあなたのデータセット内のデータを削除します。本当に？",Dataset:"データセット","This history is empty. Click 'Get Data' on the left tool menu to start":"ヒストリーは空です。解析をはじめるには、左パネルの 'データ取得' をクリック","You must be logged in to create histories":"ヒストリーを作成するためにはログインする必要があります","View data":"データを表示",Download:"ダウンロード","Download dataset":"データセットをダウンロード","View details":"細部を表示","This job is waiting to run":"ジョブは実行待ちです","This job is currently running":"ジョブは実行中です","An error occurred with this dataset":"このジョブの実行中に発生したエラー","No data":"データ無し","This dataset has been deleted and removed from disk":"このデータセットは、永続的にディスクから削除されました","This dataset has been deleted":"このデータセットは削除されました","This dataset has been hidden":"このデータセットは、非表示にされた",format:"フォーマット",database:"データベース","Edit attributes":"変数を編集する",Delete:"削除する","View or report this error":"このエラーを届け出る","Run this job again":"もう一度このジョブを実行する",Visualize:"可視化する","Undelete it":"復元する","Permanently remove it from disk":"永久にディスクから削除","Unhide it":"非表示解除する","Search Tool Shed":"Tool Shed で探す","Search Tool Shed (Beta)":"Tool Shed (Beta) で探す","Monitor installing 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Are you sure?":"Cela supprimera de manière permanente les données de votre historique. Êtes-vous certain?",Dataset:"Jeu de données",Annotation:"Annotation","This history is empty. Click 'Get Data' on the left tool menu to start":"Cet historique est vide. Cliquer sur 'Get Data' au niveau du menu d'outils à gauche pour démarrer","You must be logged in to create histories":"Vous devez être connecté pour créer un historique","load your own data":"Charger vos propres données","get data from an external source":"Charger des données depuis une source externe","Include Deleted Datasets":"Inclure les jeux de données supprimés","Include Hidden Datasets":"Inclure les jeux de données cachés","Unable to purge dataset":"Impossible de purger le jeu de données","Cannot display datasets removed from disk":"Impossible de visualiser les jeux de données supprimés du disque","This dataset must finish uploading before it can be viewed":"Le jeu de données doit être totalement téléversé avant de pouvoir être visualiser","This dataset is not yet viewable":"Ce jeu de données n'est pas visualisable","View data":"Voir les données",Download:"Télécharger","Download dataset":"Télécharger le jeu de données","Additional files":"Fichiers additionnels","View details":"Voir les détails","This is a new dataset and not all of its data are available yet":"Il s'agit d'un nouveau jeu de données et seule une partie des données est accessible pour le moment","You do not have permission to view this dataset":"Vous n'avez pas la permission de voir ce jeu de données","The job creating this dataset was cancelled before completion":"Le processus à l'origine de ce jeu de données a été annulé prématurément","This job is waiting to run":"Ce calcul est en attente de traitement","This dataset is currently uploading":"Ce jeu de données est en cours de téléversement","Metadata is being auto-detected":"Les métadonnées sont auto-détectées","This job is currently running":"Le traitement est en cours",'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':'Ce traitement est en pause. Utilisez le "Relancer les traitements en pause" dans le menu d\'historique pour le relancer',"An error occurred with this dataset":"Une erreur est survenue avec ce jeu de données","No data":"Aucune donnée","An error occurred setting the metadata for this dataset":"Une erreur est survenue pendant la récupération des métadonnées de ce jeu de données","There was an error getting the data for this dataset":"Il est survenu une erreur durant la récupération du contenu de ce jeu de données","This dataset has been deleted and removed from disk":"Ce jeu de données a été supprimé et effacé du disque","This dataset has been deleted":"Ce jeu de données a été supprimé","This dataset has been hidden":"Ce jeu de données a été caché",format:"format",database:"génome de référence","Edit attributes":"Editer les attributs","Cannot edit attributes of datasets removed from disk":"Impossible d'éditer les attributs de jeux de données effacés du disque","Undelete dataset to edit attributes":"Restaurer le jeu de données pour en éditer les attributs","This dataset must finish uploading before it can be edited":"Ce jeu de données doit être entièrement téléversé avant toute modification","This dataset is not yet editable":"Ce jeu de données n'est pas encore éditable",Delete:"Supprimer","Dataset is already deleted":"Le jeu de données est déjà supprimé","View or report this error":"Voir ou remonter cette erreur","Run this job again":"Exécuter ce traitement à nouveau",Visualize:"Visualiser","Visualize in":"Visualiser via","Undelete it":"Restaurer","Permanently remove it from disk":"Supprimer définitivement du disque","Unhide it":"Rendre visible","You may be able to":"Vous devriez être en mesure de","set it manually or retry auto-detection":"Traitez le manuellement ou retenter la détection automatique","Edit dataset tags":"Editer les mots-clés du jeu de données","Edit dataset annotation":"Editer les annotations du jeu de données",Tags:"Mots-clés","Edit annotation":"Editer les annotations"},__zh:{"This history is empty":"历史已空","No matching datasets found":"未找到匹配的数据集","Search datasets":"搜索数据集","You are currently viewing a deleted history!":"正在查看已删除的历史","You are over your disk quota":"您已超过磁盘配额",All:"皆",None:"一个也没有","For all selected":"为每个选定","Click to rename history":"单击要重命名的历史","Operations on multiple datasets":"编辑多个数据集","Permanently delete datasets":"永久删除数据集","This will permanently remove the data in your datasets. Are you sure?":"这将永久在你的数据集删除数据。你确定？",Dataset:"数据集","This history is empty. Click 'Get Data' on the left tool menu to start":"历史已空，请单击左边窗格中‘获取数据’","You must be logged in to create histories":"你必须登录后才能创建历史","View data":"数据",Download:"下载","Download dataset":"下载数据集","View details":"查看详情","This job is waiting to run":"等待运行的进程","This job is currently running":"正在运行的进程","An error occurred with this dataset":"进程运行时出错","No data":"没有数据","This dataset has been deleted":"此数据集已被删除","This dataset has been hidden":"此数据集已隐藏",format:"格式",database:"数据库","Edit attributes":"编辑属性",Delete:"删除","View or report this error":"报告错误","Run this job again":"重新运行",Visualize:"图形","Undelete it":"反删除","Permanently remove it from disk":"从磁盘中永久删除","Unhide it":"取消隐藏"}};i.init=function(t){t||(t=window._i18n&&window._i18n.locale?window._i18n.locale:document.documentElement.lang?document.documentElement.lang:"root");var e=this["__"+t]||this.__root;if(e)for(var i in e)this[i]=e[i]},i.init(),t.exports=i},function(t,e,i){"use strict";(function(t,n,r,a){function o(t){return 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_=e.categorical_filters[a][g],y="",b="";for(var w in _)y=w,b=_[w];v&&(o+=" | "),v=!0;var d=n[a];d&&_[a]&&d==b?o+='<span class="categorical-filter '+a+'-filter current-filter">'+g+"</span>":o+='<span class="categorical-filter '+a+'-filter"><a href="javascript:void(0);" filter_key="'+y+'" filter_val="'+b+'">'+g+"</a></span>"}o+="</span>"}return o+="</td></tr>"},filter_element:function(t,e){return'<span class="text-filter-val">'+(e=a.default.sanitize(e))+'<a href="javascript:void(0);" filter_key="'+t+'" filter_val="'+e+'"><i class="fa fa-times" style="padding-left: 5px; padding-bottom: 6px;"/></a></span>'}}}).call(e,i(0),i(1))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(3),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=t.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new t.Model({id:a.default.uid(),min:null,max:null,step:null,precise:!1,split:1e4,value:null,onchange:function(){}}).set(e),this.setElement(this._template()),this.$el.attr("id",this.model.id),this.$text=this.$(".ui-form-slider-text"),this.$slider=this.$(".ui-form-slider-element");var r=[];this.$text.on("change",function(){i.value(n(this).val())}).on("keyup",function(t){r[t.which]=!1}).on("keydown",function(t){var e=t.which;r[e]=!0,i.model.get("is_workflow")&&r[16]&&52==e?(i.value("$"),event.preventDefault()):8==e||9==e||13==e||37==e||39==e||e>=48&&e<=57&&!r[16]||e>=96&&e<=105||(190==e||110==e)&&-1==n(this).val().indexOf(".")&&i.model.get("precise")||(189==e||109==e)&&-1==n(this).val().indexOf("-")||i._isParameter(n(this).val())||r[91]||r[17]||event.preventDefault()});var o=this.model.attributes;this.has_slider=null!==o.max&&null!==o.min&&o.max>o.min;var s=o.step;s||(s=o.precise&&this.has_slider?(o.max-o.min)/o.split:1),this.has_slider?(this.$text.addClass("ui-form-slider-left"),this.$slider.slider({min:o.min,max:o.max,step:s}).on("slide",function(t,e){i.value(e.value)})):this.$slider.hide(),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(){var t=this.model.get("value");this.has_slider&&this.$slider.slider("value",t),t!==this.$text.val()&&this.$text.val(t)},value:function(t){var e=this.model.attributes;return void 0!==t&&(null===t||""===t||this._isParameter(t)||(isNaN(t)&&(t=0),!e.precise&&(t=Math.round(t)),null!==e.max&&(t=Math.min(t,e.max)),null!==e.min&&(t=Math.max(t,e.min))),this.model.set("value",t),this.model.trigger("change"),e.onchange(t)),this.model.get("value")},_isParameter:function(t){return this.model.get("is_workflow")&&"$"===String(t).substring(0,1)},_template:function(){return'<div class="ui-form-slider"><input class="ui-form-slider-text" type="text"/><div 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i=t.find(".button-"+e);i.on("click",function(){n._setState(e,!i.data("is_expanded"))})}function i(r,a,s){s=s||[];for(var l in a){var c=a[l],u=c.options&&c.options.length>0,h=s.slice(0);n.header_index[c.value]=h.slice(0);var d=t("<div/>");if(u){var f=o.default.uid(),p=t("<span/>").addClass("button-"+f).addClass("ui-drilldown-button fa fa-plus-square"),m=t("<div/>").addClass("subgroup-"+f).addClass("ui-drilldown-subgroup");d.append(t("<div/>").append(p).append(n._templateOption({label:c.name,value:c.value}))),h.push(f),i(m,c.options,h),d.append(m),e(d,f)}else d.append(n._templateOption({label:c.name,value:c.value}));r.append(d)}}var n=this;this.header_index={};var r=t("<div/>");return i(r,this.model.get("data")),r},_template:function(){return t("<div/>").addClass("ui-options-list drilldown-container").attr("id",this.model.id)}});e.default={View:c}}).call(e,i(0),i(1))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}function a(t,e){e||(e=0);var i=Math.pow(10,e);return Math.round(t*i)/i}function o(e){var i=t.Deferred();return t.ajax({type:"HEAD",url:e,beforeSend:function(t){t.setRequestHeader("Range","bytes=0-10")},success:function(t,e,n){i.resolve(206===n.status)}}),i}Object.defineProperty(e,"__esModule",{value:!0});var s=i(1),l=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(s),c=i(27),u=r(c),h=i(149),d=r(h),f=i(36),p=r(f),m=i(150),v=r(m),g=i(151),_=r(g),y=i(152),b=r(y),w=i(35),x=r(w),k=i(85),C=r(k),S=i(37),T=r(S),A=i(233),M=r(A);i(20);var E=l.extend,O={},$=function(t,e){O[t.attr("id")]=e},j=function(e,i,n,r){n=".group",O[e.attr("id")]=r,e.bind("drag",{handle:"."+i,relative:!0},function(e,i){var r,a,o,s,l,c=(t(this),t(this).parent()),u=c.children(".track,.group"),h=O[t(this).attr("id")];if(a=t(this).parents(n),0!==a.length){o=a.position().top,s=o+a.outerHeight();var d=O[a.attr("id")];if(i.offsetY<o)return t(this).insertBefore(a),d.remove_drawable(h),void d.container.add_drawable_before(h,d);if(i.offsetY>s)return t(this).insertAfter(a),d.remove_drawable(h),void d.container.add_drawable(h)}for(a=null,l=0;l<u.length;l++)if(r=t(u.get(l)),o=r.position().top,s=o+r.outerHeight(),r.is(n)&&this!==r.get(0)&&i.offsetY>=o&&i.offsetY<=s)return i.offsetY-o<s-i.offsetY?r.find(".content-div").prepend(this):r.find(".content-div").append(this),h.container&&h.container.remove_drawable(h),void O[r.attr("id")].add_drawable(h);for(l=0;l<u.length&&(r=t(u.get(l)),!(i.offsetY<r.position().top)||r.hasClass("reference-track")||r.hasClass("intro"));l++);l===u.length?this!==u.get(l-1)&&(c.append(this),O[c.attr("id")].move_drawable(h,l)):this!==u.get(l)&&(t(this).insertBefore(u.get(l)),O[c.attr("id")].move_drawable(h,i.deltaY>0?l-1:l))}).bind("dragstart",function(){t(this).addClass("dragging")}).bind("dragend",function(){t(this).removeClass("dragging")})},D="A converter for this dataset is not installed. Please check your datatypes_conf.xml file.",P=["Histogram","Line","Filled","Intensity"],R=function t(e,i,n){if(t.id_counter||(t.id_counter=0),this.id=t.id_counter++,this.view=e,this.container=i,this.drag_handle_class=n.drag_handle_class,this.is_overview=!1,this.action_icons={},this.config=T.default.ConfigSettingCollection.from_models_and_saved_values(this.config_params,n.prefs),this.config.get_value("name")||this.config.set_value("name",n.name),this.config_onchange&&this.config.on("change",this.config_onchange,this),this.container_div=this.build_container_div(),this.header_div=null,!1!==n.header){var r=new d.default.TrackHeaderView({model:this,id:this.id});this.header_div=r.$el,this.container_div.append(this.header_div);var a=r.icons_div;this.action_icons=r.action_icons,this.container_div.hover(function(){a.show()},function(){a.hide()})}};R.prototype.action_icons_def=[{name:"toggle_icon",title:"Hide/show content",css_class:"toggle",on_click_fn:function(t){t.config.get_value("content_visible")?(t.action_icons.toggle_icon.addClass("toggle-expand").removeClass("toggle"),t.hide_contents(),t.config.set_value("content_visible",!1)):(t.action_icons.toggle_icon.addClass("toggle").removeClass("toggle-expand"),t.config.set_value("content_visible",!0),t.show_contents())}},{name:"settings_icon",title:"Edit settings",css_class:"gear",on_click_fn:function(t){new T.default.ConfigSettingCollectionView({collection:t.config}).render_in_modal("Configure Track")}},{name:"remove_icon",title:"Remove",css_class:"remove-icon",on_click_fn:function(e){t(".tooltip").remove(),e.remove()}}],E(R.prototype,{config_params:[{key:"name",label:"Name",type:"text",default_value:""},{key:"content_visible",type:"bool",default_value:!0,hidden:!0}],config_onchange:function(){},init:function(){},changed:function(){this.view.changed()},can_draw:function(){return!(!this.enabled||!this.config.get_value("content_visible"))},request_draw:function(){},_draw:function(t){},to_dict:function(){},set_name:function(t){this.old_name=this.config.get_value("name"),this.config.set_value("name",t)},revert_name:function(){this.old_name&&this.config.set_value("name",this.old_name)},remove:function(){this.changed(),this.container.remove_drawable(this);var e=this.view;this.container_div.hide(0,function(){t(this).remove(),e.update_intro_div()})},build_container_div:function(){},update_icons:function(){},hide_contents:function(){},show_contents:function(){},get_drawables:function(){}});var N=function(t,e,i){R.call(this,t,e,i),this.obj_type=i.obj_type,this.drawables=[]};E(N.prototype,R.prototype,{unpack_drawables:function(t){this.drawables=[];for(var e,i=0;i<t.length;i++)e=nt(t[i],this.view,this),this.add_drawable(e)},init:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].init()},_draw:function(t){for(var e=0;e<this.drawables.length;e++)this.drawables[e]._draw(t)},to_dict:function(){for(var t=[],e=0;e<this.drawables.length;e++)t.push(this.drawables[e].to_dict());return{prefs:this.config.to_key_value_dict(),obj_type:this.obj_type,drawables:t}},add_drawable:function(t){this.drawables.push(t),t.container=this,this.changed()},add_drawable_before:function(t,e){this.changed();var i=this.drawables.indexOf(e);return-1!==i&&(this.drawables.splice(i,0,t),!0)},replace_drawable:function(t,e,i){var n=this.drawables.indexOf(t);return-1!==n&&(this.drawables[n]=e,i&&t.container_div.replaceWith(e.container_div),this.changed()),n},remove_drawable:function(t){var e=this.drawables.indexOf(t);return-1!==e&&(this.drawables.splice(e,1),t.container=null,this.changed(),!0)},move_drawable:function(t,e){var i=this.drawables.indexOf(t);return-1!==i&&(this.drawables.splice(i,1),this.drawables.splice(e,0,t),this.changed(),!0)},get_drawables:function(){return this.drawables},get_tracks:function(t){for(var e,i=this.drawables.slice(0),n=[];0!==i.length;)e=i.shift(),e instanceof t?n.push(e):e.drawables&&(i=i.concat(e.drawables));return n}});var I=function(e,i,n){if(E(n,{obj_type:"DrawableGroup",drag_handle_class:"group-handle"}),N.call(this,e,i,n),this.content_div=t("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div),$(this.container_div,this),$(this.content_div,this),j(this.container_div,this.drag_handle_class,".group",this),this.filters_manager=new b.default.FiltersManager(this),this.header_div.after(this.filters_manager.parent_div),this.filters_manager.parent_div.after(t("<div style='clear: both'/>")),this.saved_filters_managers=[],"drawables"in n&&this.unpack_drawables(n.drawables),"filters"in n){var r=this.filters_manager;this.filters_manager=new b.default.FiltersManager(this,n.filters),r.parent_div.replaceWith(this.filters_manager.parent_div),n.filters.visible&&this.setup_multitrack_filtering()}};E(I.prototype,R.prototype,N.prototype,{action_icons_def:[R.prototype.action_icons_def[0],R.prototype.action_icons_def[1],{name:"composite_icon",title:"Show composite track",css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_composite_track()}},{name:"filters_icon",title:"Filters",css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?(t.filters_manager.clear_filters(),t._restore_filter_managers()):(t.setup_multitrack_filtering(),t.request_draw({clear_tile_cache:!0})),t.filters_manager.toggle()}},R.prototype.action_icons_def[2]],build_container_div:function(){var e=t("<div/>").addClass("group").attr("id","group_"+this.id);return this.container&&this.container.content_div.append(e),e},hide_contents:function(){this.tiles_div.hide()},show_contents:function(){this.tiles_div.show(),this.request_draw()},update_icons:function(){var e=this.drawables.length;if(0===e)this.action_icons.composite_icon.hide(),this.action_icons.filters_icon.hide();else if(1===e)this.action_icons.composite_icon.toggle(this.drawables[0]instanceof Y),this.action_icons.filters_icon.hide();else{var i,n,r,a=this.drawables[0].get_type(),o=0;for(i=0;i<e;i++){if(r=this.drawables[i],r.get_type()!==a){can_composite=!1;break}r instanceof Z&&o++}if(this.drawables[0]instanceof K?this.action_icons.composite_icon.show():(this.action_icons.composite_icon.hide(),t(".tooltip").remove()),o>1&&o===this.drawables.length){var s,l={};for(r=this.drawables[0],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],l[s.name]=[s];for(i=1;i<this.drawables.length;i++)for(r=this.drawables[i],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],s.name in l&&l[s.name].push(s);this.filters_manager.remove_all();var c,u;for(var h in l)c=l[h],c.length===o&&(u=new b.default.NumberFilter({name:c[0].name,index:c[0].index}),this.filters_manager.add_filter(u));this.action_icons.filters_icon.toggle(this.filters_manager.filters.length>0)}else this.action_icons.filters_icon.hide()}},_restore_filter_managers:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].filters_manager=this.saved_filters_managers[t];this.saved_filters_managers=[]},setup_multitrack_filtering:function(){if(this.filters_manager.filters.length>0){this.saved_filters_managers=[];for(var t=0;t<this.drawables.length;t++){var e=this.drawables[t];this.saved_filters_managers.push(e.filters_manager),e.filters_manager=this.filters_manager}}this.filters_manager.init_filters()},show_composite_track:function(){var t=new Y(this.view,this.view,{name:this.config.get_value("name"),drawables:this.drawables});this.container.replace_drawable(this,t,!0);t.request_draw()},add_drawable:function(t){N.prototype.add_drawable.call(this,t),this.update_icons()},remove_drawable:function(t){N.prototype.remove_drawable.call(this,t),this.update_icons()},to_dict:function(){this.filters_manager.visible()&&this._restore_filter_managers();var t=E(N.prototype.to_dict.call(this),{filters:this.filters_manager.to_dict()});return this.filters_manager.visible()&&this.setup_multitrack_filtering(),t},request_draw:function(t){l.each(this.drawables,function(e){e.request_draw(t)})}});var L=n.View.extend({initialize:function(t){E(t,{obj_type:"View"}),N.call(this,"View",t.container,t),this.chrom=null,this.vis_id=t.vis_id,this.dbkey=t.dbkey,this.stand_alone=void 0===t.stand_alone||t.stand_alone,this.label_tracks=[],this.tracks_to_be_redrawn=[],this.max_low=0,this.max_high=0,this.zoom_factor=3,this.min_separation=30,this.has_changes=!1,this.load_chroms_deferred=null,this.render(),this.canvas_manager=new u.default.CanvasManager(this.container.get(0).ownerDocument),this.reset(),this.config=T.default.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"}],{name:t.name})},render:function(){this.requested_redraw=!1;var e=this.container,i=this;this.top_container=t("<div/>").addClass("top-container").appendTo(e),this.browser_content_div=t("<div/>").addClass("content").appendTo(e),this.bottom_container=t("<div/>").addClass("bottom-container").appendTo(e),this.top_labeltrack=t("<div/>").addClass("top-labeltrack").appendTo(this.top_container),this.viewport_container=t("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div),this.content_div=this.viewport_container,$(this.viewport_container,i),this.intro_div=t("<div/>").addClass("intro").appendTo(this.viewport_container);t("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){u.default.select_datasets({dbkey:i.dbkey},function(t){l.each(t,function(t){i.add_drawable(nt(t,i,i))})})});this.nav_container=t("<div/>").addClass("trackster-nav-container").prependTo(this.top_container),this.nav=t("<div/>").addClass("trackster-nav").appendTo(this.nav_container),this.stand_alone&&(this.nav_container.addClass("stand-alone"),this.nav.addClass("stand-alone")),this.overview=t("<div/>").addClass("overview").appendTo(this.bottom_container),this.overview_viewport=t("<div/>").addClass("overview-viewport").appendTo(this.overview),this.overview_close=t("<a/>").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport),this.overview_highlight=t("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport),this.overview_box_background=t("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport),this.overview_box=t("<div/>").addClass("overview-box").appendTo(this.overview_viewport),this.default_overview_height=this.overview_box.height(),this.nav_controls=t("<div/>").addClass("nav-controls").appendTo(this.nav),this.chrom_select=t("<select/>").attr({name:"chrom"}).addClass("chrom-nav").append("<option value=''>Loading</option>").appendTo(this.nav_controls);var n=function(e){"focusout"!==e.type&&13!==(e.keyCode||e.which)&&27!==(e.keyCode||e.which)||(27!==(e.keyCode||e.which)&&i.go_to(t(this).val()),t(this).hide(),t(this).val(""),i.location_span.show(),i.chrom_select.show()),e.stopPropagation()};this.nav_input=t("<input/>").addClass("nav-input").hide().bind("keyup focusout",n).appendTo(this.nav_controls),this.location_span=t("<span/>").addClass("location").attr("title","Click to change location").tooltip({placement:"bottom"}).appendTo(this.nav_controls),this.location_span.click(function(){i.location_span.hide(),i.chrom_select.hide(),i.nav_input.val(i.chrom+":"+i.low+"-"+i.high),i.nav_input.css("display","inline-block"),i.nav_input.select(),i.nav_input.focus(),i.nav_input.autocomplete({source:function(e,n){var r=[],a=t.map(i.get_tracks(Z),function(t){return t.data_manager.search_features(e.term).success(function(t){r=r.concat(t)})});t.when.apply(t,a).done(function(){n(t.map(r,function(t){return{label:t[0],value:t[1]}}))})},minLength:2})}),void 0!==this.vis_id&&(this.hidden_input=t("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)),this.zo_link=t("<a/>").attr("id","zoom-out").attr("title","Zoom out").tooltip({placement:"bottom"}).click(function(){i.zoom_out()}).appendTo(this.nav_controls),this.zi_link=t("<a/>").attr("id","zoom-in").attr("title","Zoom in").tooltip({placement:"bottom"}).click(function(){i.zoom_in()}).appendTo(this.nav_controls),this.load_chroms_deferred=this.load_chroms({low:0}),this.chrom_select.bind("change",function(){i.change_chrom(i.chrom_select.val())}),this.browser_content_div.click(function(e){t(this).find("input").trigger("blur")}),this.browser_content_div.bind("dblclick",function(t){i.zoom_in(t.pageX,this.viewport_container)}),this.overview_box.bind("dragstart",function(t,e){this.current_x=e.offsetX}).bind("drag",function(t,e){var n=e.offsetX-this.current_x;this.current_x=e.offsetX;var r=Math.round(n/i.viewport_container.width()*(i.max_high-i.max_low));i.move_delta(-r)}),this.overview_close.click(function(){i.reset_overview()}),this.viewport_container.bind("draginit",function(t,e){if(t.clientX>i.viewport_container.width()-16)return!1}).bind("dragstart",function(t,e){e.original_low=i.low,e.current_height=t.clientY,e.current_x=e.offsetX}).bind("drag",function(e,n){var r=t(this),a=n.offsetX-n.current_x,o=r.scrollTop()-(e.clientY-n.current_height);r.scrollTop(o),n.current_height=e.clientY,n.current_x=n.offsetX;var s=Math.round(a/i.viewport_container.width()*(i.high-i.low));i.move_delta(s)}),this.top_labeltrack.bind("dragstart",function(e,n){return t("<div/>").addClass("zoom-area").css("height",i.browser_content_div.height()+i.top_labeltrack.height()+1).appendTo(t(this))}).bind("drag",function(e,n){t(n.proxy).css({left:Math.min(e.pageX,n.startX)-i.container.offset().left,width:Math.abs(e.pageX-n.startX)});var r=Math.min(e.pageX,n.startX)-i.container.offset().left,a=Math.max(e.pageX,n.startX)-i.container.offset().left,o=i.high-i.low,s=i.viewport_container.width();i.update_location(Math.round(r/s*o)+i.low,Math.round(a/s*o)+i.low)}).bind("dragend",function(e,n){var r=Math.min(e.pageX,n.startX),a=Math.max(e.pageX,n.startX),o=i.high-i.low,s=i.viewport_container.width(),l=i.low;i.low=Math.round(r/s*o)+l,i.high=Math.round(a/s*o)+l,t(n.proxy).remove(),i.request_redraw()}),this.add_label_track(new X(this,{content_div:this.top_labeltrack})),t(window).bind("resize",function(){this.resize_timer&&clearTimeout(this.resize_timer),this.resize_timer=setTimeout(function(){i.resize_window()},500)}),t(document).bind("redraw",function(){i.redraw()}),this.reset(),t(window).trigger("resize")},get_base_color:function(t){return this.config.get_value(t.toLowerCase()+"_color")||this.config.get_value("n_color")}});E(L.prototype,N.prototype,{changed:function(){this.has_changes=!0},update_intro_div:function(){this.intro_div.toggle(0===this.drawables.length)},trigger_navigate:function(t,e,i,n){if(this.timer&&clearTimeout(this.timer),n){var r=this;this.timer=setTimeout(function(){r.trigger("navigate",t+":"+e+"-"+i)},500)}else view.trigger("navigate",t+":"+e+"-"+i)},update_location:function(t,e){this.location_span.text(p.default.commatize(t)+" - "+p.default.commatize(e)),this.nav_input.val(this.chrom+":"+p.default.commatize(t)+"-"+p.default.commatize(e));var i=this.chrom_select.val();""!==i&&this.trigger_navigate(i,this.low,this.high,!0)},load_chroms:function(e){e.num=100;var i=this,n=t.Deferred();return t.ajax({url:Galaxy.root+"api/genomes/"+this.dbkey,data:e,dataType:"json",success:function(e){if(0!==e.chrom_info.length){if(e.reference){var r=new J(i);i.add_label_track(r),i.reference_track=r}i.chrom_data=e.chrom_info,i.chrom_select.html(""),i.chrom_select.append(t('<option value="">Select Chrom/Contig</option>'));for(var a=0,o=i.chrom_data.length;a<o;a++){var s=i.chrom_data[a].chrom,l=t("<option>");l.text(s),l.val(s),i.chrom_select.append(l)}e.prev_chroms&&i.chrom_select.append(t('<option value="previous">Previous 100</option>')),e.next_chroms&&i.chrom_select.append(t('<option value="next">Next 100</option>')),i.chrom_start_index=e.start_index,n.resolve(e.chrom_info)}},error:function(){alert("Could not load chroms for this dbkey: "+i.dbkey)}}),n},change_chrom:function(e,i,n){var r=this;if(!r.chrom_data)return void r.load_chroms_deferred.then(function(){r.change_chrom(e,i,n)});if(e&&"None"!==e){if("previous"===e)return void r.load_chroms({low:this.chrom_start_index-100});if("next"===e)return void r.load_chroms({low:this.chrom_start_index+100});var a=t.grep(r.chrom_data,function(t,i){return t.chrom===e})[0];if(void 0===a)return void r.load_chroms({chrom:e},function(){r.change_chrom(e,i,n)});if(e!==r.chrom){r.chrom=e,r.chrom_select.val(r.chrom),r.max_high=a.len-1,r.reset();for(var o=0,s=r.drawables.length;o<s;o++){var l=r.drawables[o];l.init&&l.init()}r.reference_track&&r.reference_track.init()}void 0===i&&void 0===n?(r.low=0,r.high=r.max_high):(r.low=void 0!==i?Math.max(i,0):0,void 0===n?(r.low=Math.max(r.low-15,0),r.high=r.low+30):r.high=Math.min(n,r.max_high)),r.request_redraw()}},go_to:function(t){t=t.replace(/,/g,""),t=t.replace(/:|\-/g," ");var e=t.split(/\s+/),i=e[0],n=e[1]?parseInt(e[1],10):void 0,r=e[2]?parseInt(e[2],10):void 0;this.change_chrom(i,n,r)},move_fraction:function(t){var e=this,i=e.high-e.low;this.move_delta(t*i)},move_delta:function(t){var e=this,i=e.high-e.low;e.low-t<e.max_low?(e.low=e.max_low,e.high=e.max_low+i):e.high-t>e.max_high?(e.high=e.max_high,e.low=e.max_high-i):(e.high-=t,e.low-=t),e.request_redraw({data_fetch:!1}),this.redraw_on_move_fn&&clearTimeout(this.redraw_on_move_fn),this.redraw_on_move_fn=setTimeout(function(){e.request_redraw()},200);var n=e.chrom_select.val();this.trigger_navigate(n,e.low,e.high,!0)},add_drawable:function(t){N.prototype.add_drawable.call(this,t),t.init(),this.changed(),this.update_intro_div();var e=this;t.config.on("change",function(){e.changed()})},add_label_track:function(t){t.view=this,t.init(),this.label_tracks.push(t)},remove_drawable:function(e,i){if(N.prototype.remove_drawable.call(this,e),i){var n=this;e.container_div.hide(0,function(){t(this).remove(),n.update_intro_div()})}},reset:function(){this.low=this.max_low,this.high=this.max_high,this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(t,e){var i=this,n=e?[e]:i.drawables;l.each(n,function(e){var n=l.find(i.tracks_to_be_redrawn,function(t){return t[0]===e});n?n[1]=t:i.tracks_to_be_redrawn.push([e,t])}),this.requested_redraw||(requestAnimationFrame(function(){i._redraw()}),this.requested_redraw=!0)},_redraw:function(){this.requested_redraw=!1;var t=this.low,e=this.high;t<this.max_low&&(t=this.max_low),e>this.max_high&&(e=this.max_high);var i=this.high-this.low;0!==this.high&&i<this.min_separation&&(e=t+this.min_separation),this.low=Math.floor(t),this.high=Math.ceil(e),this.update_location(this.low,this.high),this.resolution_px_b=this.viewport_container.width()/(this.high-this.low);var n=this.low/(this.max_high-this.max_low)*this.overview_viewport.width()||0,r=(this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width()||0;this.overview_box.css({left:n,width:Math.max(13,r)}).show(),r<13&&this.overview_box.css("left",n-(13-r)/2),this.overview_highlight&&this.overview_highlight.css({left:n,width:r}),l.each(this.tracks_to_be_redrawn,function(t){var e=t[0],i=t[1];e&&e._draw(i)}),this.tracks_to_be_redrawn=[],l.each(this.label_tracks,function(t){t._draw()})},zoom_in:function(t,e){if(!(0===this.max_high||this.high-this.low<=this.min_separation)){var i=this.high-this.low,n=i/2+this.low,r=i/this.zoom_factor/2;t&&(n=t/this.viewport_container.width()*(this.high-this.low)+this.low),this.low=Math.round(n-r),this.high=Math.round(n+r),this.changed(),this.request_redraw()}},zoom_out:function(){if(0!==this.max_high){var t=this.high-this.low,e=t/2+this.low,i=t*this.zoom_factor/2;this.low=Math.round(e-i),this.high=Math.round(e+i),this.changed(),this.request_redraw()}},resize_viewport:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height())},resize_window:function(){this.resize_viewport(),this.request_redraw()},set_overview:function(t){if(this.overview_drawable){if(this.overview_drawable.dataset.id===t.dataset.id)return;this.overview_viewport.find(".track").remove()}var e=t.copy({content_div:this.overview_viewport}),i=this;e.header_div.hide(),e.is_overview=!0,i.overview_drawable=e,this.overview_drawable.postdraw_actions=function(){i.overview_highlight.show().height(i.overview_drawable.content_div.height()),i.overview_viewport.height(i.overview_drawable.content_div.height()+i.overview_box.outerHeight()),i.overview_close.show(),i.resize_window()},i.overview_drawable.request_draw(),this.changed()},reset_overview:function(){t(".tooltip").remove(),this.overview_viewport.find(".track-tile").remove(),this.overview_viewport.height(this.default_overview_height),this.overview_box.height(this.default_overview_height),this.overview_close.hide(),this.overview_highlight.hide(),view.resize_window(),view.overview_drawable=null}});var H=C.default.Tool.extend({defaults:{track:null},initialize:function(t){C.default.Tool.prototype.initialize.call(this,t);var e=!0;void 0!==t.tool_state&&void 0!==t.tool_state.hidden&&(e=t.tool_state.hidden),this.set("hidden",e),this.remove_inputs(["data","hidden_data","conditional"])},state_dict:function(t){return l.extend(this.get_inputs_dict(),{hidden:!this.is_visible()})}}),q=n.View.extend({events:{"change :input":"update_value"},render:function(){var e=this.$el.addClass("param-row"),i=this.model;t("<div>").addClass("param-label").text(i.get("label")).appendTo(e);t("<div/>").addClass("param-input").html(i.get("html")).appendTo(e).find(":input").val(i.get("value")),t("<div style='clear: both;'/>").appendTo(e)},update_value:function(e){this.model.set_value(t(e.target).val())}}),z=n.View.extend({initialize:function(t){this.model.on("change:hidden",this.set_visible,this)},render:function(){var e=this,i=this.model,n=this.$el.addClass("dynamic-tool").hide();n.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).keydown(function(t){t.stopPropagation()});t("<div class='tool-name'>").appendTo(n).text(i.get("name"));i.get("inputs").each(function(t){var e=new q({model:t});e.render(),n.append(e.$el)}),n.find("input").click(function(){t(this).select()});var r=t("<div>").addClass("param-row").appendTo(n),a=t("<input type='submit'>").attr("value","Run on complete dataset").appendTo(r);t("<input type='submit'>").attr("value","Run on visible region").appendTo(r).click(function(){e.run_on_region()}),a.click(function(){e.run_on_dataset()}),i.is_visible()&&this.$el.show()},set_visible:function(){this.$el.toggle(this.model.is_visible())},update_params:function(){for(var t=0;t<this.params.length;t++)this.params[t].update_value()},run_on_dataset:function(){var t=this.model;this.run({target_dataset_id:this.model.get("track").dataset.id,action:"rerun",tool_id:t.id},null,function(e){Galaxy.modal.show({title:t.get("name")+" is Running",body:t.get("name")+" is running on the complete dataset. Tool outputs are in dataset's history.",buttons:{Close:function(){Galaxy.modal.hide()}}})})},run_on_region:function(){var t,e=this.model.get("track"),i=this.model,n=new u.default.GenomeRegion({chrom:e.view.chrom,start:e.view.low,end:e.view.high}),r={target_dataset_id:e.dataset.id,action:"rerun",tool_id:i.id,regions:[n.toJSON()]},a=e,o=i.get("name")+a.tool_region_and_parameters_str(n);if(a.container===view){var s=new I(view,view,{name:e.config.get_value("name")}),l=a.container.replace_drawable(a,s,!1);s.container_div.insertBefore(a.view.content_div.children()[l]),s.add_drawable(a),a.container_div.appendTo(s.content_div),t=s}else t=a.container;var c=new a.constructor(view,t,{name:o,hda_ldda:"hda"});c.init_for_tool_data(),c.change_mode(a.mode),c.set_filters_manager(a.filters_manager.copy(c)),c.update_icons(),t.add_drawable(c),c.tiles_div.text("Starting job."),this.run(r,c,function(t){c.set_dataset(new x.default.Dataset(t)),c.tiles_div.text("Running job."),c.init()})},run:function(e,i,n){e.inputs=this.model.get_inputs_dict();var r=new p.default.ServerStateDeferred({ajax_settings:{url:Galaxy.root+"api/tools",data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});t.when(r.go()).then(function(t){"no converter"===t?(i.container_div.addClass("error"),i.content_div.text(D)):t.error?(i.container_div.addClass("error"),i.content_div.text("Tool cannot be rerun: "+t.message)):n(t)})}}),F=function(t,e){_.default.Scaler.call(this,e),this.filter=t};F.prototype.gen_val=function(t){return this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high?this.default_val:(parseFloat(t[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low)};var B=function(e,i,n,r,a){this.track=e,this.region=i,this.low=i.get("start"),this.high=i.get("end"),this.w_scale=n,this.canvas=r,this.html_elt=t("<div class='track-tile'/>").append(r),this.data=a,this.stale=!1};B.prototype.predisplay_actions=function(){};var V=function(t,e,i,n,r){B.call(this,t,e,i,n,r)};V.prototype.predisplay_actions=function(){};var U=function(t,e,i,n,r,a,o,s,l,c,u){B.call(this,t,e,i,n,r),this.mode=a,this.all_slotted=s,this.feature_mapper=l,this.has_icons=!1,this.incomplete_features=c,this.other_tiles_features_drawn={},this.seq_data=u};E(U.prototype,B.prototype),U.prototype.predisplay_actions=function(){};var W=function(e,i,r){E(r,{drag_handle_class:"draghandle"}),R.call(this,e,i,r),this.dataset=null,r.dataset&&(this.dataset=r.dataset instanceof n.Model?r.dataset:new x.default.Dataset(r.dataset)),this.dataset_check_type="converted_datasets_state",this.data_url_extra_params={},this.data_query_wait="data_query_wait"in r?r.data_query_wait:5e3,this.data_manager="data_manager"in r?r.data_manager:new u.default.GenomeDataManager({dataset:this.dataset,genome:new u.default.Genome({key:e.dbkey,chroms_info:{chrom_info:e.chrom_data}}),data_mode_compatible:this.data_and_mode_compatible,can_subset:this.can_subset}),this.min_height_px=16,this.max_height_px=800,this.visible_height_px=this.config.get_value("height"),this.content_div=t("<div class='track-content'>").appendTo(this.container_div),this.container&&(this.container.content_div.append(this.container_div),"resize"in r&&!r.resize||this.add_resize_handle())};E(W.prototype,R.prototype,{action_icons_def:[{name:"mode_icon",title:"Set display mode",css_class:"chevron-expand",on_click_fn:function(){}},R.prototype.action_icons_def[0],{name:"overview_icon",title:"Set as overview",css_class:"application-dock-270",on_click_fn:function(t){t.view.set_overview(t)}},R.prototype.action_icons_def[1],{name:"filters_icon",title:"Filters",css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?t.filters_manager.clear_filters():t.filters_manager.init_filters(),t.filters_manager.toggle()}},{name:"tools_icon",title:"Tool",css_class:"hammer",on_click_fn:function(e){e.tool.toggle(),e.tool.is_visible()?e.set_name(e.config.get_value("name")+e.tool_region_and_parameters_str()):e.revert_name(),t(".tooltip").remove()}},{name:"param_space_viz_icon",title:"Tool parameter space visualization",css_class:"arrow-split",on_click_fn:function(e){var i="<strong>Tool</strong>:"+e.tool.get("name")+"<br/><strong>Dataset</strong>:"+e.config.get_value("name")+'<br/><strong>Region(s)</strong>: <select name="regions"><option value="cur">current viewing area</option><option value="bookmarks">bookmarks</option><option value="both">current viewing area and bookmarks</option></select>',r=function(){Galaxy.modal.hide(),t(window).unbind("keypress.check_enter_esc")},a=function(){var i,r=t('select[name="regions"] option:selected').val(),a=new u.default.GenomeRegion({chrom:view.chrom,start:view.low,end:view.high}),o=l.map(t(".bookmark"),function(e){return new u.default.GenomeRegion({from_str:t(e).children(".position").text()})});i="cur"===r?[a]:"bookmarks"===r?o:[a].concat(o),Galaxy.modal.hide(),window.location.href=Galaxy.root+"visualization/sweepster?"+t.param({dataset_id:e.dataset.id,hda_ldda:e.dataset.get("hda_ldda"),regions:JSON.stringify(new n.Collection(i).toJSON())})};Galaxy.modal.show({title:"Visualize tool parameter space and output from different parameter settings?",body:i,buttons:{No:r,Yes:a}})}},R.prototype.action_icons_def[2]],can_draw:function(){return this.dataset&&R.prototype.can_draw.call(this)},build_container_div:function(){return t("<div/>").addClass("track").attr("id","track_"+this.id)},set_dataset:function(t){this.dataset=t,this.data_manager.set("dataset",t)},on_resize:function(){this.request_draw({clear_tile_cache:!0})},add_resize_handle:function(){var e=this,i=!1,n=!1,r=t("<div class='track-resize'>");t(e.container_div).hover(function(){e.config.get_value("content_visible")&&(i=!0,r.show())},function(){i=!1,n||r.hide()}),r.hide().bind("dragstart",function(i,r){n=!0,r.original_height=t(e.content_div).height()}).bind("drag",function(i,n){var r=Math.min(Math.max(n.original_height+n.deltaY,e.min_height_px),e.max_height_px);t(e.tiles_div).css("height",r),e.visible_height_px=e.max_height_px===r?0:r,e.on_resize()}).bind("dragend",function(t,a){e.tile_cache.clear(),n=!1,i||r.hide(),e.config.set_value("height",e.visible_height_px),e.changed()}).appendTo(e.container_div)},hide_contents:function(){this.tiles_div.hide(),this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.tiles_div.show(),this.container_div.find(".yaxislabel, .track-resize").show(),this.request_draw()},get_type:function(){return this instanceof X?"LabelTrack":this instanceof J?"ReferenceTrack":this instanceof K?"LineTrack":this instanceof et?"ReadTrack":this instanceof tt?"VariantTrack":this instanceof Y?"CompositeTrack":this instanceof Z?"FeatureTrack":""},show_message:function(e){return this.tiles_div.remove(),t("<span/>").addClass("message").html(e).appendTo(this.content_div)},init:function(e){var i=this;if(i.enabled=!1,i.tile_cache.clear(),i.data_manager.clear(),i.content_div.children().remove(),i.container_div.removeClass("nodata error pending"),i.tiles_div=t("<div/>").addClass("tiles").appendTo(i.content_div),i.dataset.id){var n=t.Deferred(),r={hda_ldda:i.dataset.get("hda_ldda"),data_type:this.dataset_check_type,chrom:i.view.chrom,retry:e};return t.getJSON(this.dataset.url(),r,function(e){if(e&&"error"!==e&&"error"!==e.kind)"no converter"===e?(i.container_div.addClass("error"),i.show_message(D)):"no data"===e||void 0!==e.data&&(null===e.data||0===e.data.length)?(i.container_div.addClass("nodata"),i.show_message("No data for this chrom/contig.")):"pending"===e?(i.container_div.addClass("pending"),i.show_message("Preparing data. This can take a while for a large dataset. If the visualization is saved and closed, preparation will continue in the background."),setTimeout(function(){i.init()},i.data_query_wait)):"data"!==e&&"data"!==e.status||(e.valid_chroms&&(i.valid_chroms=e.valid_chroms,i.update_icons()),i.tiles_div.text("Ready for display"),i.view.chrom?(i.tiles_div.text(""),i.tiles_div.css("height",i.visible_height_px+"px"),i.enabled=!0,t.when.apply(t,i.predraw_init()).done(function(){n.resolve(),i.container_div.removeClass("nodata error pending"),i.request_draw()})):n.resolve());else{i.container_div.addClass("error");var r=i.show_message("Cannot display dataset due to an error. ");e.message&&(r.append(t("<a href='javascript:void(0);'></a>").text("View error").click(function(){Galaxy.modal.show({title:"Trackster Error",body:"<pre>"+e.message+"</pre>",buttons:{Close:function(){Galaxy.modal.hide()}}})})),r.append(t("<span/>").text(" ")),r.append(t("<a href='javascript:void(0);'></a>").text("Try again").click(function(){i.init(!0)})))}}),this.update_icons(),n}},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(i&&void 0!==i.min&&void 0!==i.max){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_default_value("min_value",n),e.config.set_default_value("max_value",r),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},get_drawables:function(){return this}});var G=function(e,i,n){W.call(this,e,i,n);var r=this;if(j(r.container_div,r.drag_handle_class,".group",r),this.filters_manager=new b.default.FiltersManager(this,"filters"in n?n.filters:null),this.data_manager.set("filters_manager",this.filters_manager),this.filters_available=!1,this.tool=n.tool?new H(l.extend(n.tool,{track:this,tool_state:n.tool_state})):null,this.tile_cache=new u.default.Cache(10),this.left_offset=0,this.header_div&&(this.set_filters_manager(this.filters_manager),this.tool)){var a=new z({model:this.tool});a.render(),this.dynamic_tool_div=a.$el,this.header_div.after(this.dynamic_tool_div)}this.tiles_div=t("<div/>").addClass("tiles").appendTo(this.content_div),this.config.get_value("content_visible")||this.tiles_div.hide(),this.overlay_div=t("<div/>").addClass("overlay").appendTo(this.content_div),n.mode&&this.change_mode(n.mode)};E(G.prototype,R.prototype,W.prototype,{action_icons_def:W.prototype.action_icons_def.concat([{name:"show_more_rows_icon",title:"To minimize track height, not all feature rows are displayed. Click to display more rows.",css_class:"exclamation",on_click_fn:function(e){t(".tooltip").remove(),e.slotters[e.view.resolution_px_b].max_rows*=2,e.request_draw({clear_tile_cache:!0})},hide:!0}]),copy:function(t){var e=this.to_dict();E(e,{data_manager:this.data_manager});var i=new this.constructor(this.view,t,e);return i.change_mode(this.mode),i.enabled=this.enabled,i},set_filters_manager:function(t){this.filters_manager=t,this.header_div.after(this.filters_manager.parent_div)},to_dict:function(){return{track_type:this.get_type(),dataset:{id:this.dataset.id,hda_ldda:this.dataset.get("hda_ldda")},prefs:this.config.to_key_value_dict(),mode:this.mode,filters:this.filters_manager.to_dict(),tool_state:this.tool?this.tool.state_dict():{}}},set_min_max:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(isNaN(parseFloat(e.config.get_value("min_value")))||isNaN(parseFloat(e.config.get_value("max_value")))){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},change_mode:function(t){var e=this;return e.mode=t,e.config.set_value("mode",t),"Auto"===t&&this.data_manager.clear(),e.request_draw({clear_tile_cache:!0}),this.action_icons.mode_icon.attr("title","Set display mode (now: "+e.mode+")"),e},update_icons:function(){var t=this;t.action_icons.filters_icon.toggle(t.filters_available),t.action_icons.tools_icon.toggle(null!==t.tool),t.action_icons.param_space_viz_icon.toggle(null!==t.tool)},_gen_tile_cache_key:function(t,e){return t+"_"+e},request_draw:function(t){t&&t.clear_tile_cache&&this.tile_cache.clear(),this.view.request_redraw(t,this)},before_draw:function(){this.max_height_px=0},_draw:function(e){if(this.can_draw()){var i=e&&e.clear_after,n=this.view.low,r=this.view.high,a=this.view.container.width(),o=this.view.resolution_px_b,s=1/o;this.is_overview&&(n=this.view.max_low,r=this.view.max_high,o=a/(view.max_high-view.max_low),s=1/o),this.before_draw(),this.tiles_div.children().addClass("remove");for(var c,h,d=Math.floor(400*s),f=Math.floor(n/d),p=[],m=[];f*d<r;)c=new u.default.GenomeRegion({chrom:this.view.chrom,start:f*d,end:Math.min((f+1)*d,this.view.max_high)}),h=this.draw_helper(c,o,e),p.push(h),t.when(h).then(function(t){m.push(t)}),f+=1;i||this.tiles_div.children(".remove").removeClass("remove").remove();var v=this;t.when.apply(t,p).then(function(){v.tiles_div.children(".remove").remove(),m=l.filter(m,function(t){return null!==t}),0!==m.length&&v.postdraw_actions(m,a,o,i)})}},_add_yaxis_label:function(e,i){var n=this,r="max"===e?"top":"bottom",o="max"===e?"max":"min",s="max"===e?"max_value":"min_value",l=this.container_div.find(".yaxislabel."+r),c=a(n.config.get_value(s),1);i=i||function(){n.request_draw({clear_tile_cache:!0})},0!==l.length?l.text(c):(l=t("<div/>").text(c).make_text_editable({num_cols:12,on_finish:function(e){t(".tooltip").remove(),n.config.set_value(s,a(e,1)),i()},help_text:"Set "+o+" value"}).addClass("yaxislabel "+r).css("color",this.config.get_value("label_color")),this.container_div.prepend(l))},postdraw_actions:function(t,e,i,n){if(l.filter(t,function(t){return t instanceof V}).length>0){this.max_height_px=0;var r=this;l.each(t,function(t){t instanceof V||(t.html_elt.remove(),r.draw_helper(t.region,i,{force:!0,mode:"Coverage"}))}),r._add_yaxis_label("max")}else this.container_div.find(".yaxislabel").remove(),l.find(t,function(t){return t.has_icons})&&l.each(t,function(t){t.has_icons||t.html_elt.css("padding-top",20)})},get_mode:function(t){return this.mode},update_auto_mode:function(t){},_get_drawables:function(){return[this]},draw_helper:function(e,i,n){n||(n={});var r=n.force,a=n.mode||this.mode,o=1/i,s=this,c=this._get_drawables(),u=this._gen_tile_cache_key(i,e),h=r?void 0:s.tile_cache.get_elt(u);if(h)return function(t){return t&&"track"in t}(h)&&s.show_tile(h,i),h;if(!1===n.data_fetch)return null;var d=function(){var t=l.find(P,function(t){return t===a})?"Coverage":a,i=l.map(c,function(i){return i.data_manager.get_data(e,t,o,s.data_url_extra_params)});return view.reference_track&&i.push(view.reference_track.data_manager.get_data(e,a,o,view.reference_track.data_url_extra_params)),i},f=t.Deferred();return s.tile_cache.set_elt(u,f),t.when.apply(t,d()).then(function(){var r,a=d(),o=a;if(l.find(a,function(t){return p.default.is_deferred(t)}))return s.tile_cache.set_elt(u,void 0),void t.when(s.draw_helper(e,i,n)).then(function(t){f.resolve(t)});view.reference_track&&(r=view.reference_track.data_manager.subset_entry(a.pop(),e));var h=[],m=[];l.each(c,function(t,e){var n=t.mode,r=o[e];"Auto"===n&&(n=t.get_mode(r),t.update_auto_mode(n)),h.push(n),m.push(t.get_canvas_height(r,n,i,b))});var v,g=s.view.canvas_manager.new_canvas(),_=e.get("start"),y=e.get("end"),b=Math.ceil((y-_)*i)+s.left_offset,w=l.max(m);g.width=b,g.height=n.height||w;var x=g.getContext("2d");x.translate(s.left_offset,0),c.length>1&&(x.globalAlpha=.5,x.globalCompositeOperation="source-over"),l.each(c,function(t,n){v=t.draw_tile(o[n],x,h[n],e,i,r)}),void 0!==v&&(s.tile_cache.set_elt(u,v),s.show_tile(v,i)),f.resolve(v)}),f},get_canvas_height:function(t,e,i,n){return this.visible_height_px},_draw_line_track_tile:function(t,e,i,n,r){-1!==[void 0,null].indexOf(this.config.get_value("min_value"))&&this.config.set_value("min_value",0),-1!==[void 0,null,0].indexOf(this.config.get_value("max_value"))&&this.config.set_value("max_value",l.max(l.map(t.data,function(t){return t[1]}))||0);var a=e.canvas;return new _.default.LinePainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new V(this,n,r,a,t.data)},draw_tile:function(t,e,i,n,r,a){},show_tile:function(t,e){var i=t.html_elt;t.predisplay_actions();var n=Math.round((t.low-(this.is_overview?this.view.max_low:this.view.low))*e);this.left_offset&&(n-=this.left_offset),i.css("left",n),i.hasClass("remove")?i.removeClass("remove"):this.tiles_div.append(i),i.css("height","auto"),this.max_height_px=Math.max(this.max_height_px,i.height()-2),i.parent().children().css("height",this.max_height_px+"px");var r=this.max_height_px;0!==this.visible_height_px&&(r=Math.min(this.max_height_px,this.visible_height_px)),this.tiles_div.css("height",r+"px")},tool_region_and_parameters_str:function(t){var e=this;return" - region=["+(void 0!==t?t.toString():"all")+"], parameters=["+l.values(e.tool.get_inputs_dict()).join(", ")+"]"},data_and_mode_compatible:function(t,e){return"Auto"===e||("Coverage"===e?"bigwig"===t.dataset_type:"bigwig"!==t.dataset_type&&"no_detail"!==t.extra_info)},can_subset:function(t){return!t.message&&"no_detail"!==t.extra_info&&("bigwig"!==t.dataset_type||t.data[1][0]-t.data[0][0]==1)},init_for_tool_data:function(){this.data_manager.set("data_type","raw_data"),this.data_query_wait=1e3,this.dataset_check_type="state"}});var X=function(t,e){W.call(this,t,e,{resize:!1,header:!1}),this.container_div.addClass("label-track")};E(X.prototype,W.prototype,{init:function(){this.enabled=!0},predraw_init:function(){},_draw:function(e){for(var i=this.view,n=i.high-i.low,r=Math.floor(Math.pow(10,Math.floor(Math.log(n)/Math.log(10)))),a=Math.floor(i.low/r)*r,o=this.view.container.width(),s=t("<div/>").addClass("label-container");a<i.high;){var l=Math.floor((a-i.low)/n*o);s.append(t("<div/>").addClass("pos-label").text(p.default.commatize(a)).css({left:l})),a+=r}this.content_div.children(":first").remove(),this.content_div.append(s)}});var Y=function(t,e,i){if(G.call(this,t,e,i),this.drawables=[],"drawables"in i){for(var n,r=0;r<i.drawables.length;r++)n=i.drawables[r],this.drawables[r]=nt(n,t,null),n.left_offset>this.left_offset&&(this.left_offset=n.left_offset);this.enabled=!0}l.each(this.drawables,function(t){(t instanceof Z||t instanceof et)&&t.change_mode("Coverage")}),this.update_icons(),this.obj_type="CompositeTrack"};E(Y.prototype,G.prototype,{display_modes:P,build_config_params:function(){return l.union(R.prototype.config_params,[{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},action_icons_def:[{name:"composite_icon",title:"Show individual tracks",css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_group()}}].concat(G.prototype.action_icons_def),to_dict:N.prototype.to_dict,add_drawable:N.prototype.add_drawable,unpack_drawables:N.prototype.unpack_drawables,config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},on_resize:function(){var t=this.visible_height_px;l.each(this.drawables,function(e){e.visible_height_px=t}),W.prototype.on_resize.call(this)},change_mode:function(t){G.prototype.change_mode.call(this,t);for(var e=0;e<this.drawables.length;e++)this.drawables[e].change_mode(t)},init:function(){for(var e=[],i=0;i<this.drawables.length;i++)e.push(this.drawables[i].init());var n=this;t.when.apply(t,e).then(function(){n.enabled=!0,n.request_draw()})},update_icons:function(){this.action_icons.filters_icon.hide(),this.action_icons.tools_icon.hide(),this.action_icons.param_space_viz_icon.hide()},can_draw:R.prototype.can_draw,_get_drawables:function(){return this.drawables},show_group:function(){for(var t,e=new I(this.view,this.container,{name:this.config.get_value("name")}),i=0;i<this.drawables.length;i++)t=this.drawables[i],t.update_icons(),e.add_drawable(t),t.container=e,e.content_div.append(t.container_div);this.container.replace_drawable(this,e,!0);e.request_draw({clear_tile_cache:!0})},before_draw:function(){var t=l.min(l.map(this.drawables,function(t){return t.config.get_value("min_value")})),e=l.max(l.map(this.drawables,function(t){return t.config.get_value("max_value")}));this.config.set_value("min_value",t),this.config.set_value("max_value",e),l.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)})},update_all_min_max:function(){var t=this.config.get_value("min_value"),e=this.config.get_value("max_value");l.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)}),this.request_draw({clear_tile_cache:!0})},postdraw_actions:function(t,e,i,n){var r,a=-1;for(r=0;r<t.length;r++){var o=t[r].html_elt.find("canvas").height();o>a&&(a=o)}for(r=0;r<t.length;r++){var s=t[r];s.html_elt.find("canvas").height()!==a&&(this.draw_helper(s.region,i,{force:!0,height:a}),s.html_elt.remove())}var l=this,c=function(){l.update_all_min_max()};this._add_yaxis_label("min",c),this._add_yaxis_label("max",c)}});var J=function(t){G.call(this,t,{content_div:t.top_labeltrack},{resize:!1,header:!1}),this.left_offset=t.canvas_manager.char_width_px,this.container_div.addClass("reference-track"),this.data_url=Galaxy.root+"api/genomes/"+this.view.dbkey,this.data_url_extra_params={reference:!0},this.data_manager=new u.default.GenomeReferenceDataManager({data_url:this.data_url,can_subset:this.can_subset}),this.hide_contents()};E(J.prototype,R.prototype,G.prototype,{build_config_params:function(){return l.union(R.prototype.config_params,[{key:"height",type:"int",default_value:13,hidden:!0}])},init:function(){this.data_manager.clear(),this.enabled=!0},predraw_init:function(){},can_draw:R.prototype.can_draw,draw_helper:function(t,e,i){var n,r=this.tiles_div.is(":visible"),a=null;return e>this.view.canvas_manager.char_width_px?(this.tiles_div.show(),n=!0,a=G.prototype.draw_helper.call(this,t,e,i)):(n=!1,this.tiles_div.hide()),r!==n&&this.view.resize_viewport(),a},can_subset:function(t){return!0},draw_tile:function(t,e,i,n,r){var a=this.data_manager.subset_entry(t,n),o=a.data,s=e.canvas;e.font=e.canvas.manager.default_font,e.textAlign="center";for(var l=0,c=o.length;l<c;l++)e.fillStyle=this.view.get_base_color(o[l]),e.fillText(o[l],Math.floor(l*r),10);return new B(this,n,r,s,a)}});var K=function(e,i,n){this.mode="Histogram",G.call(this,e,i,n),this.left_offset=30;var r=this;t.when(o(Galaxy.root+"datasets/"+this.dataset.id+"/display")).then(function(t){t&&(r.data_manager=new M.default.BBIDataManager({dataset:r.dataset}))})};E(K.prototype,R.prototype,G.prototype,{display_modes:P,build_config_params:function(){return l.union(R.prototype.config_params,[{key:"color",label:"Color",type:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},before_draw:function(){},draw_tile:function(t,e,i,n,r){return this._draw_line_track_tile(t,e,i,n,r)},can_subset:function(t){return t.data[1][0]-t.data[0][0]==1},postdraw_actions:function(t,e,i,n){this._add_yaxis_label("max"),this._add_yaxis_label("min")}});var Q=function(t,e,i){this.mode="Heatmap",G.call(this,t,e,i)};E(Q.prototype,R.prototype,G.prototype,{display_modes:["Heatmap"],build_config_params:function(){return l.union(R.prototype.config_params,[{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"min_value",label:"Min Value",type:"int",default_value:void 0},{key:"max_value",label:"Max Value",type:"int",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:500,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){t.data})},draw_tile:function(t,e,i,n,r){var a=e.canvas;return new _.default.DiagonalHeatmapPainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new B(this,n,r,a,t.data)}});var Z=function(t,e,i){G.call(this,t,e,i),this.container_div.addClass("feature-track"),this.summary_draw_height=30,this.slotters={},this.start_end_dct={},this.left_offset=200,this.set_painter_from_config()};E(Z.prototype,R.prototype,G.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return l.union(R.prototype.config_params,[{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0,help:"Show the number of items in each bin when drawing summary histogram"},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.set_painter_from_config(),this.request_draw({clear_tile_cache:!0})},set_painter_from_config:function(){"arcs"===this.config.get_value("connector_style")?this.painter=_.default.ArcLinkedFeaturePainter:this.painter=_.default.LinkedFeaturePainter},postdraw_actions:function(e,i,n,r){G.prototype.postdraw_actions.call(this,e,i,n,r);var a,o=this;if(0===l.filter(e,function(t){return t instanceof V}).length){var s={};l.each(l.pluck(e,"incomplete_features"),function(t){l.each(t,function(t){s[t[0]]=t})});var c=this;l.each(e,function(e){var i=l.omit(s,l.map(e.incomplete_features,function(t){return t[0]}));if(i=l.omit(i,l.keys(e.other_tiles_features_drawn)),0!==l.size(i)){var n={data:l.values(i)},r=c.view.canvas_manager.new_canvas(),a=r.getContext("2d");r.height=Math.max(e.canvas.height,c.get_canvas_height(n,e.mode,e.w_scale,100)),r.width=e.canvas.width,a.drawImage(e.canvas,0,0),a.translate(o.left_offset,0);var u=c.draw_tile(n,a,e.mode,e.region,e.w_scale,e.seq_data);t(e.canvas).replaceWith(t(u.canvas)),e.canvas=r,l.extend(e.other_tiles_features_drawn,s)}})}if(o.filters_manager){var u,h=o.filters_manager.filters;for(u=0;u<h.length;u++)h[u].update_ui_elt();var d,f,p=!1;for(a=0;a<e.length;a++)if(e[a].data.length)for(d=e[a].data[0],u=0;u<h.length;u++)if(f=h[u],f.applies_to(d)&&f.min!==f.max){p=!0;break}o.filters_available!==p&&(o.filters_available=p,o.filters_available||o.filters_manager.hide(),o.update_icons())}if(e[0]instanceof U){var m=!0;for(a=0;a<e.length;a++)if(!e[a].all_slotted){m=!1;break}this.action_icons.show_more_rows_icon.toggle(!m)}else this.action_icons.show_more_rows_icon.hide()},update_auto_mode:function(t){"Auto"===this.mode&&("no_detail"===t&&(t="feature spans"),this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+t+")"))},incremental_slots:function(t,e,i){var n=this.view.canvas_manager.dummy_context,r=this.slotters[t];return r&&r.mode===i||(r=new v.default.FeatureSlotter(t,i,100,function(t){return n.measureText(t)}),this.slotters[t]=r),r.slot_features(e)},get_mode:function(t){return"no_detail"===t.extra_info||this.is_overview?"no_detail":this.view.high-this.view.low>12e3?"Squish":"Pack"},get_canvas_height:function(t,e,i,n){if("Coverage"===e||"bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.incremental_slots(i,t.data,e),a=new this.painter(null,null,null,this.config.to_key_value_dict(),e);return Math.max(this.min_height_px,a.get_required_height(r,n))},draw_tile:function(t,e,i,n,r,a,o){var s=this,l=e.canvas,c=n.get("start"),u=n.get("end"),h=this.left_offset;if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,i,n,r);var d=[],f=this.slotters[r].slots,p=!0;if(t.data)for(var m=this.filters_manager.filters,v=0,g=t.data.length;v<g;v++){for(var _,y=t.data[v],b=!1,w=0,x=m.length;w<x;w++)if(_=m[w],_.update_attrs(y),!_.keep(y)){b=!0;break}b||(d.push(y),y[0]in f||(p=!1))}var k=this.filters_manager.alpha_filter?new F(this.filters_manager.alpha_filter):null,C=this.filters_manager.height_filter?new F(this.filters_manager.height_filter):null,S=new this.painter(d,c,u,this.config.to_key_value_dict(),i,k,C,a,function(t){return s.view.get_base_color(t)}),T=null;if(e.fillStyle=this.config.get_value("block_color"),e.font=e.canvas.manager.default_font,e.textAlign="right",t.data){var A=S.draw(e,l.width,l.height,r,f);T=A.feature_mapper,incomplete_features=A.incomplete_features,T.translation=-h}return o?void 0:new U(s,n,r,l,t.data,i,t.message,p,T,incomplete_features,a)}});var tt=function(t,e,i){G.call(this,t,e,i),this.painter=_.default.VariantPainter,this.summary_draw_height=30,this.left_offset=30};E(tt.prototype,R.prototype,G.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return l.union(R.prototype.config_params,[{key:"color",label:"Histogram color",type:"color"},{key:"show_sample_data",label:"Show sample data",type:"bool",default_value:!0},{key:"show_labels",label:"Show summary and sample labels",type:"bool",default_value:!0},{key:"summary_height",label:"Locus summary height",type:"float",default_value:20},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},draw_tile:function(t,e,i,n,r){if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,"Histogram",n,r);var a=this.view;return new this.painter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i,function(t){return a.get_base_color(t)}).draw(e,e.canvas.width,e.canvas.height,r),new B(this,n,r,e.canvas,t.data)},get_canvas_height:function(t,e,i,n){if("bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.dataset.get_metadata("sample_names")?this.dataset.get_metadata("sample_names").length:0;return 0===r&&0!==t.data.length&&(r=t.data[0][7].match(/,/g),r=null===r?1:r.length+1),new this.painter(null,null,null,this.config.to_key_value_dict(),e).get_required_height(r)},predraw_init:function(){var t=[W.prototype.predraw_init.call(this)];return this.dataset.get_metadata("sample_names")||t.push(this.dataset.fetch()),t},postdraw_actions:function(e,i,n,r){G.prototype.postdraw_actions.call(this,e,i,n,r);var a=l.filter(e,function(t){return t instanceof V}),o=this.dataset.get_metadata("sample_names");if(0===a.length&&this.config.get_value("show_labels")&&o&&o.length>1){var s;if(0===this.container_div.find(".yaxislabel.variant").length&&(s=this.config.get_value("summary_height")/2,this.tiles_div.prepend(t("<div/>").text("Summary").addClass("yaxislabel variant top").css({"font-size":s+"px",top:(this.config.get_value("summary_height")-s)/2+"px"})),this.config.get_value("show_sample_data"))){var c=o.join("<br/>");this.tiles_div.prepend(t("<div/>").html(c).addClass("yaxislabel variant top sample").css({top:this.config.get_value("summary_height")}))}s=("Squish"===this.mode?5:10)+"px",t(this.tiles_div).find(".sample").css({"font-size":s,"line-height":s}),t(this.tiles_div).find(".yaxislabel").css("color",this.config.get_value("label_color"))}else this.container_div.find(".yaxislabel.variant").remove()}});var et=function(t,e,i){Z.call(this,t,e,i),this.painter=_.default.ReadPainter,this.update_icons()};E(et.prototype,R.prototype,G.prototype,Z.prototype,{build_config_params:function(){return l.union(R.prototype.config_params,[{key:"block_color",label:"Histogram color",type:"color"},{key:"detail_block_color",label:"Sense strand block color",type:"color",default_value:"#AAAAAA"},{key:"reverse_strand_color",label:"Antisense strand block color",type:"color",default_value:"#DDDDDD"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:!1},{key:"show_differences",label:"Show differences only",type:"bool",default_value:!0},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})}});var it={CompositeTrack:Y,DrawableGroup:I,DiagonalHeatmapTrack:Q,FeatureTrack:Z,LineTrack:K,ReadTrack:et,VariantTrack:tt,VcfTrack:tt},nt=function(t,e,i){if("copy"in t)return t.copy(i);var n=t.obj_type;return n||(n=t.track_type),new it[n](e,i,t)};e.default={TracksterView:L,DrawableGroup:I,LineTrack:K,FeatureTrack:Z,DiagonalHeatmapTrack:Q,ReadTrack:et,VariantTrack:tt,CompositeTrack:Y,object_from_template:nt}}).call(e,i(0),i(2))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(1),a=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(r),o=t.View.extend({className:"track-header",initialize:function(){this.model.config.get("name").on("change:value",this.update_name,this),this.render()},render:function(){this.$el.append(n("<div/>").addClass(this.model.drag_handle_class)),this.$el.append(n("<div/>").addClass("track-name").text(this.model.config.get_value("name"))),this.action_icons={},this.render_action_icons(),this.$el.dblclick(function(t){t.stopPropagation()}),this.$el.append(n("<div style='clear: both'/>"))},update_name:function(){this.$el.find(".track-name").text(this.model.config.get_value("name"))},render_action_icons:function(){var t=this;this.icons_div=n("<div/>").addClass("track-icons").hide().appendTo(this.$el),a.each(this.model.action_icons_def,function(e){t.add_action_icon(e.name,e.title,e.css_class,e.on_click_fn,e.prepend,e.hide)}),this.set_display_modes(this.model.display_modes)},add_action_icon:function(t,e,i,r,a,o){var s=this;this.action_icons[t]=n("<a/>").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(function(){r(s.model)}).appendTo(this.icons_div),o&&this.action_icons[t].hide()},set_display_modes:function(t,e){if(t){this.model.display_modes=t,this.model.mode=e||this.model.config.get_value("mode")||this.model.display_modes[0],this.action_icons.mode_icon.attr("title","Set display mode (now: "+this.mode+")");for(var i=this.model,n={},r=0,a=i.display_modes.length;r<a;r++){var o=i.display_modes[r];n[o]=function(t){return function(){i.change_mode(t)}}(o)}make_popupmenu(this.action_icons.mode_icon,n)}}});e.default={TrackHeaderView:o}}).call(e,i(2),i(0))},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=r.extend,o=function(t,e){this.slot=t,this.feature=e},s=function(t,e,i,n){this.slots={},this.start_end_dct={},this.w_scale=t,this.mode=e,this.include_label="Pack"===e,this.max_rows=i,this.measureText=n};a(s.prototype,{_get_draw_coords:function(t){var e=Math.floor(t[1]*this.w_scale),i=Math.ceil(t[2]*this.w_scale),n=t[3];if(void 0!==n&&this.include_label){var r=this.measureText(n).width+7;e-r>=0?(e-=r,"left"):(i+=r,"right")}return[e,i]},_find_slot:function(t){for(var e=t[0],i=t[1],n=0;n<=this.max_rows;n++){var r=!1,a=this.start_end_dct[n];if(void 0!==a)for(var o=0,s=a.length;o<s;o++){var l=a[o];if(i>l[0]&&e<l[1]){r=!0;break}}if(!r)return n}return-1},slot_features:function(t){for(var e,i,n=this.start_end_dct,r=[],a=0,s=0,l=t.length;s<l;s++){e=t[s],i=e[0];var c=this.slots[i];if(c){if(e[1]<c.feature[1]||c.feature[2]<e[2])for(var u=this._get_draw_coords(c.feature),h=this._get_draw_coords(e),d=this.start_end_dct[c.slot],f=0;f<d.length;f++){var p=d[f];p[0]===u[0]&&p[1]===u[1]&&(d[f]=h)}a=Math.max(a,this.slots[i].slot)}else r.push(s)}for(var s=0,l=r.length;s<l;s++){e=t[r[s]],i=e[0];var m=this._get_draw_coords(e),v=this._find_slot(m);v>=0&&(void 0===n[v]&&(n[v]=[]),n[v].push(m),this.slots[i]=new o(v,e),a=Math.max(a,v))}return a+1}}),e.default={FeatureSlotter:s}},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=function(t,e){var i=t[0],n=t[1],r=e[0],a=e[1];return i<r?n<=r?1001:n<=a?1003:1002:i>a?1006:n<=a?1005:1004},o=function(t,e){var i=a(t,e);return 1001!==i&&1006!==i},s=function(t,e,i,n,r,a){void 0===a&&(a=4);var o,s=n-e,l=r-i,c=Math.floor(Math.sqrt(s*s+l*l)/a),u=s/c,h=l/c;for(o=0;o<c;o++,e+=u,i+=h)o%2==0&&t.fillRect(e,i,a,1)},l=function(t,e,i,n){var r=e-n/2,a=e+n/2,o=i-Math.sqrt(3*n/2);t.beginPath(),t.moveTo(r,o),t.lineTo(a,o),t.lineTo(e,i),t.lineTo(r,o),t.strokeStyle=this.fillStyle,t.fill(),t.stroke(),t.closePath()},c=function(t){this.default_val=t||1};c.prototype.gen_val=function(t){return this.default_val};var u=function(t){this.incomplete_features=t.incomplete_features,this.feature_mapper=t.feature_mapper},h=function(t,e,i,n,a){this.data=t,this.view_start=e,this.view_end=i,this.prefs=r.extend({},this.default_prefs,n),this.mode=a};h.prototype.default_prefs={},h.prototype.draw=function(t,e,i,n){},h.prototype.get_start_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,-.5)},h.prototype.get_end_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,.5)},h.prototype.get_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,0)},h.prototype._chrom_pos_to_draw_pos=function(t,e,i){return Math.floor(e*(Math.max(0,t-this.view_start)+i))};var d=function(t,e,i,n,r){h.call(this,t,e,i,n,r)};d.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Histogram",color:"#000",overflow_color:"#F66"},d.prototype.draw=function(t,e,i,n){var a=!1,o=this.prefs.min_value,s=this.prefs.max_value,l=s-o,c=i,u=this.view_start,h=this.mode,d=this.data;t.save();var f=Math.round(i+o/l*i);"Intensity"!==h&&(t.fillStyle="#aaa",t.fillRect(0,f,e,1)),t.beginPath();var p,m,v;v=d.length>1?r.map(d.slice(0,-1),function(t,e){return Math.ceil((d[e+1][0]-d[e][0])*n)}):[10];for(var g,_=this.prefs.block_color||this.prefs.color,y=parseInt(_.slice(1),16),b=(16711680&y)>>16,w=(65280&y)>>8,x=255&y,k=!1,C=!1,S=0,T=d.length;S<T;S++)if(t.fillStyle=t.strokeStyle=_,k=C=!1,g=v[S],p=Math.floor((d[S][0]-u-.5)*n),null!==(m=d[S][1])){if(m<o?(C=!0,m=o):m>s&&(k=!0,m=s),"Histogram"===h)m=Math.round(m/l*c),t.fillRect(p,f,g,-m);else if("Intensity"===h){var A=(m-o)/l,M=Math.round(b+(255-b)*(1-A)),E=Math.round(w+(255-w)*(1-A)),O=Math.round(x+(255-x)*(1-A));t.fillStyle="rgb("+M+","+E+","+O+")",t.fillRect(p,0,g,c)}else m=Math.round(c-(m-o)/l*c),a?t.lineTo(p,m):(a=!0,"Filled"===h?(t.moveTo(p,c),t.lineTo(p,m)):t.moveTo(p,m));if(t.fillStyle=this.prefs.overflow_color,k||C){var $;"Histogram"===h||"Intensity"===h?$=g:(p-=2,$=4),k&&t.fillRect(p,0,$,3),C&&t.fillRect(p,c-3,$,3)}t.fillStyle=_}else a&&"Filled"===h&&t.lineTo(p,c),a=!1;"Filled"===h?(a&&(t.lineTo(p,f),t.lineTo(0,f)),t.fill()):t.stroke(),t.restore()};var f=function(t){this.feature_positions={},this.slot_height=t,this.translation=0,this.y_translation=0};f.prototype.map_feature_data=function(t,e,i,n){this.feature_positions[e]||(this.feature_positions[e]=[]),this.feature_positions[e].push({data:t,x_start:i,x_end:n})},f.prototype.get_feature_data=function(t,e){var i,n=Math.floor((e-this.y_translation)/this.slot_height);if(!this.feature_positions[n])return null;t+=this.translation;for(var r=0;r<this.feature_positions[n].length;r++)if(i=this.feature_positions[n][r],t>=i.x_start&&t<=i.x_end)return i.data};var p=function(t,e,i,n,r,a,o){h.call(this,t,e,i,n,r),this.alpha_scaler=a||new c,this.height_scaler=o||new c,this.max_label_length=200};p.prototype.default_prefs={block_color:"#FFF",connector_color:"#FFF"},r.extend(p.prototype,{get_required_height:function(t,e){var i=this.get_row_height(),n=i,r=this.mode;return"no_detail"!==r&&"Squish"!==r&&"Pack"!==r||(i=t*n),i+this.get_top_padding(e)},get_top_padding:function(t){return 0},draw:function(t,e,i,n,r){var a=this.data,o=this.view_start,s=this.view_end;t.save(),t.fillStyle=this.prefs.block_color,t.textAlign="right";for(var l,c=this.get_row_height(),h=new f(c),d=[],p=0,m=a.length;p<m;p++){var v=a[p],g=v[0],_=v[1],y=v[2],b=r&&void 0!==r[g]?r[g].slot:null;("Dense"===this.mode||null!==b)&&_<s&&y>o&&(l=this.draw_element(t,this.mode,v,b,o,s,n,c,e),h.map_feature_data(v,b,l[0],l[1]),(_<o||y>s)&&d.push(v))}return t.restore(),h.y_translation=this.get_top_padding(e),new u({incomplete_features:d,feature_mapper:h})},draw_element:function(t,e,i,n,r,a,o,s,l){return[0,0]}});var m=function(t,e,i,n,r,a,o){p.call(this,t,e,i,n,r,a,o),this.draw_background_connector=!0,this.draw_individual_connectors=!1};r.extend(m.prototype,p.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"no_detail"===t?3:"Squish"===t?5:10},draw_element:function(t,e,i,n,r,a,o,s,l){var c,u=(i[0],i[1]),h=i[2],d=i[3],f=i[4],p=Math.floor(Math.max(0,(u-r-.5)*o)),m=Math.ceil(Math.min(l,Math.max(0,(h-r-.5)*o))),v=p,g=m,c=("Dense"===e?0:0+n)*s+this.get_top_padding(l),_=null,y=null,b=f&&"+"!==f&&"."!==f?this.prefs.reverse_strand_color:this.prefs.block_color,w=this.prefs.label_color;if(t.globalAlpha=this.alpha_scaler.gen_val(i),"Dense"===e&&(n=1),"no_detail"===e)t.fillStyle=b,t.fillRect(p,c+5,m-p,1);else{var x=i[5],k=i[6],C=i[7],S=!0;x&&k&&(_=Math.floor(Math.max(0,(x-r)*o)),y=Math.ceil(Math.min(l,Math.max(0,(k-r)*o))));var T,A;if("Squish"===e?(T=1,A=3,S=!1):(T=5,A=9),C){var M,E;"Squish"===e||"Dense"===e?(M=c+Math.floor(1.5)+1,E=1):f?(M=c,E=A):(M+=2.5,E=1),this.draw_background_connector&&("Squish"===e||"Dense"===e?t.fillStyle="#ccc":f?"+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand")):t.fillStyle="#ccc",t.fillRect(p,M,m-p,E));for(var O=0,$=C.length;O<$;O++){var j,D,P=C[O],R=Math.floor(Math.max(0,(P[0]-r-.5)*o)),N=Math.ceil(Math.min(l,Math.max((P[1]-r-.5)*o)));if(!(R>N)){if(t.fillStyle=b,t.fillRect(R,c+(A-T)/2+1,N-R,T),void 0!==_&&k>x&&!(R>y||N<_)){var I=Math.max(R,_),L=Math.min(N,y);t.fillRect(I,c+1,L-I,A),1===C.length&&"Pack"===e&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),I+14<L&&(I+=2,L-=2),t.fillRect(I,c+1,L-I,A))}this.draw_individual_connectors&&j&&this.draw_connector(t,j,D,R,N,c),j=R,D=N}}if("Pack"===e){t.globalAlpha=1,t.fillStyle="white";var H=this.height_scaler.gen_val(i),q=Math.ceil(A*H),z=Math.round((A-q)/2);1!==H&&(t.fillRect(p,M+1,m-p,z),t.fillRect(p,M+A-z+1,m-p,z))}}else t.fillStyle=b,t.fillRect(p,c+1,m-p,A),f&&S&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),t.fillRect(p,c+1,m-p,A));t.globalAlpha=1,d&&"Pack"===e&&u>r&&(t.fillStyle=w,0===r&&p-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,m+2,c+8,this.max_label_length),g+=t.measureText(d).width+2):(t.textAlign="right",t.fillText(d,p-2,c+8,this.max_label_length),v-=t.measureText(d).width+2))}return t.globalAlpha=1,[v,g]}});var v=function(t,e,i,n,r,a,o,s,l){p.call(this,t,e,i,n,r,a,o),this.ref_seq=s?s.data:null,this.base_color_fn=l};r.extend(v.prototype,p.prototype,{get_row_height:function(){var t,e=this.mode;return"Dense"===e?t=10:"Squish"===e?t=5:(t=10,this.prefs.show_insertions&&(t*=2)),t},_parse_cigar:function(t){var e="MIDNSHP=X",i=[[0,0]],n=i[0],a=0,o=r.map(t.match(/[0-9]+[MIDNSHP=X]/g),function(t){var r=parseInt(t.slice(0,-1),10),o=t.slice(-1);return"N"===o?0!==n[1]&&(n=[a+r,a+r],i.push(n)):-1==="ISHP".indexOf(o)&&(n[1]+=r,a+=r),[e.indexOf(o),r]});return{blocks:i,cigar:o}},draw_read:function(t,e,i,n,r,s,c,u,h,d){var f=function(t){return Math.floor(Math.max(0,(t-r-.5)*i))};t.textAlign="center";var p,m,v=[r,s],g=0,_=0,y=Math.round(i/2),b=t.canvas.manager.char_width_px,w="+"===h?this.prefs.detail_block_color:this.prefs.reverse_strand_color,k="Pack"===e,C=k?9:3,S=n+1,T=new x(t,C,i,e),A=[],M=[],E=this._parse_cigar(u);u=E.cigar,A=E.blocks;for(var O=0;O<A.length;O++){var $=A[O];o([c+$[0],c+$[1]],v)&&(p=f(c+$[0]),m=f(c+$[1]),p===m&&(m+=1),t.fillStyle=w,t.fillRect(p,S,m-p,C))}for(var j=0,D=u.length;j<D;j++){var P=u[j],R="MIDNSHP=X"[P[0]],N=P[1],I=c+g;if(p=f(I),m=f(I+N),o([I,I+N],v))switch(p===m&&(m+=1),R){case"H":case"S":case"P":break;case"M":g+=N;break;case"=":case"X":var L="";"X"===R?L=d.slice(_,_+N):this.ref_seq&&(L=this.ref_seq.slice(Math.max(0,I-r),Math.min(I-r+N,s-r)));for(var H=Math.max(I,r),q=0;q<L.length;q++)if(L&&!this.prefs.show_differences||"X"===R){var z=Math.floor(Math.max(0,(H+q-r)*i));t.fillStyle=this.base_color_fn(L[q]),k&&i>b?t.fillText(L[q],z,n+9):i>.05&&t.fillRect(z-y,S,Math.max(1,Math.round(i)),C)}"X"===R&&(_+=N),g+=N;break;case"N":t.fillStyle="#ccc",t.fillRect(p,S+(C-1)/2,m-p,1),g+=N;break;case"D":T.draw_deletion(p,S,N),g+=N;break;case"I":var F=p-y;if(o([I,I+N],v)){var B=d.slice(_,_+N);if(this.prefs.show_insertions){var V=p-(m-p)/2;if(("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b){switch(t.fillStyle="yellow",t.fillRect(V-y,n-9,m-p,9),M[M.length]={type:"triangle",data:[F,n+4,5]},t.fillStyle="#ccc",a([I,I+N],v)){case 1003:B=B.slice(r-I);break;case 1004:B=B.slice(0,I-s);break;case 1005:break;case 1002:B=B.slice(r-I,I-s)}for(var q=0,U=B.length;q<U;q++){var z=Math.floor(Math.max(0,(I+q-r)*i));t.fillText(B[q],z-(m-p)/2,n)}}else t.fillStyle="yellow",t.fillRect(V,n+("Dense"!==this.mode?2:5),m-p,"Dense"!==e?3:9)}else("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b&&M.push({type:"text",data:[B.length,F,n+9]})}_+=N}else g=function(t,e,i){return-1!=="M=NXD".indexOf(e)&&(t+=i),t}(g,R,N),_=function(t,e,i){return-1!=="IX".indexOf(e)&&(t+=i),t}(_,R,N)}t.fillStyle="yellow";for(var W,G,X,O=0;O<M.length;O++)W=M[O],G=W.type,X=W.data,"text"===G?(t.save(),t.font="bold "+t.font,t.fillText(X[0],X[1],X[2]),t.restore()):"triangle"===G&&l(t,X[0],X[1],X[2])},draw_element:function(t,e,i,n,r,a,o,l,c){var u=(i[0],i[1]),h=i[2],d=i[3],f=Math.floor(Math.max(-.5*o,(u-r-.5)*o)),p=Math.ceil(Math.min(c,Math.max(0,(h-r-.5)*o))),m=("Dense"===e?0:0+n)*l,v="Pack"===e?9:3;this.prefs.label_color;if(i[5]instanceof Array){var g=!0;i[4][1]>=r&&i[4][0]<=a&&i[4][2]?this.draw_read(t,e,o,m,r,a,i[4][0],i[4][2],i[4][3],i[4][4]):g=!1,i[5][1]>=r&&i[5][0]<=a&&i[5][2]?this.draw_read(t,e,o,m,r,a,i[5][0],i[5][2],i[5][3],i[5][4]):g=!1;var _=Math.ceil(Math.min(c,Math.max(-.5*o,(i[4][1]-r-.5)*o))),y=Math.floor(Math.max(-.5*o,(i[5][0]-r-.5)*o));if(g&&y>_){t.fillStyle="#ccc";var b=m+1+(v-1)/2;s(t,_,b,y,b)}}else this.draw_read(t,e,o,m,r,a,u,i[4],i[5],i[6]);return"Pack"===e&&u>=r&&"."!==d&&(t.fillStyle=this.prefs.label_color,0===r&&f-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,p+2,m+9,this.max_label_length)):(t.textAlign="right",t.fillText(d,f-2,m+9,this.max_label_length))),[0,0]}});var g=function(t,e,i,n,r,a,o){m.call(this,t,e,i,n,r,a,o),this.longest_feature_length=this.calculate_longest_feature_length(),this.draw_background_connector=!1,this.draw_individual_connectors=!0};r.extend(g.prototype,p.prototype,m.prototype,{calculate_longest_feature_length:function(){for(var t=0,e=0,i=this.data.length;e<i;e++){var n=this.data[e],r=n[1],a=n[2];t=Math.max(t,a-r)}return t},get_top_padding:function(t){var e=this.view_end-this.view_start,i=t/e;return Math.min(128,Math.ceil(this.longest_feature_length/2*i))},draw_connector:function(t,e,i,n,r,a){var o=(i+n)/2,s=n-o;Math.PI;s>0&&(t.beginPath(),t.arc(o,a,n-o,Math.PI,0),t.stroke())}});var _=function(t,e){Array.isArray(t)?this.rgb=t:6==t.length?this.rgb=t.match(/.{2}/g).map(function(t){return parseInt(t,16)}):7==t.length?this.rgb=t.substring(1,7).match(/.{2}/g).map(function(t){return parseInt(t,16)}):this.rgb=t.split("").map(function(t){return parseInt(t+t,16)}),this.alpha="number"==typeof e?e:1};_.prototype={eval:function(){return this},toCSS:function(){return this.alpha<1?"rgba("+this.rgb.map(function(t){return Math.round(t)}).concat(this.alpha).join(", ")+")":"#"+this.rgb.map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},toHSL:function(){var t,e,i=this.rgb[0]/255,n=this.rgb[1]/255,r=this.rgb[2]/255,a=this.alpha,o=Math.max(i,n,r),s=Math.min(i,n,r),l=(o+s)/2,c=o-s;if(o===s)t=e=0;else{switch(e=l>.5?c/(2-o-s):c/(o+s),o){case i:t=(n-r)/c+(n<r?6:0);break;case n:t=(r-i)/c+2;break;case r:t=(i-n)/c+4}t/=6}return{h:360*t,s:e,l:l,a:a}},toARGB:function(){return"#"+[Math.round(255*this.alpha)].concat(this.rgb).map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},mix:function(t,e){var i=this,n=e,r=2*n-1,a=i.toHSL().a-t.toHSL().a,o=((r*a==-1?r:(r+a)/(1+r*a))+1)/2,s=1-o,l=[i.rgb[0]*o+t.rgb[0]*s,i.rgb[1]*o+t.rgb[1]*s,i.rgb[2]*o+t.rgb[2]*s],c=i.alpha*n+t.alpha*(1-n);return new _(l,c)}};var y=function(t,e,i,n){this.start_color=new _(t),this.end_color=new _(e),this.start_value=i,this.end_value=n,this.value_range=n-i};y.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t=(t-this.start_value)/this.value_range,this.start_color.mix(this.end_color,1-t).toCSS()};var b=function(t,e,i,n,r){this.positive_ramp=new y(e,i,0,r),this.negative_ramp=new y(e,t,0,-n),this.start_value=n,this.end_value=r};b.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t>=0?this.positive_ramp.map_value(t):this.negative_ramp.map_value(-t)};var w=function(t,e,i,n,r){h.call(this,t,e,i,n,r);var a,o;if(void 0===this.prefs.min_value){var s=1/0;for(a=0,o=this.data.length;a<o;a++)s=Math.min(s,this.data[a][6]);this.prefs.min_value=s}if(void 0===this.prefs.max_value){var l=-1/0;for(a=0,o=this.data.length;a<o;a++)l=Math.max(l,this.data[a][6]);this.prefs.max_value=l}};w.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Heatmap",pos_color:"#FF8C00",neg_color:"#4169E1"},w.prototype.draw=function(t,e,i,n){var r,a,o,s,l,c,u=this.prefs.min_value,h=this.prefs.max_value,d=this.view_start,f=(this.mode,this.data),p=1/Math.sqrt(2),m=new b(this.prefs.neg_color,"#FFFFFF",this.prefs.pos_color,u,h),v=function(t){return(t-d)*n};t.save(),t.rotate(-45*Math.PI/180),t.scale(p,p);for(var g=0,_=f.length;g<_;g++)r=f[g],a=v(r[1]),o=v(r[2]),s=v(r[4]),l=v(r[5]),c=r[6],t.fillStyle=m.map_value(c),t.fillRect(a,s,o-a,l-s);t.restore()};var x=function(t,e,i,n){this.ctx=t,this.row_height=e,this.px_per_base=i,this.draw_details=("Pack"===n||"Auto"===n)&&i>=t.canvas.manager.char_width_px,this.delete_details_thickness=.2};r.extend(x.prototype,{draw_deletion:function(t,e,i){this.ctx.fillStyle="black";var n=(this.draw_details?this.delete_details_thickness:1)*this.row_height;e+=.5*(this.row_height-n),this.ctx.fillRect(t,e,i*this.px_per_base,n)}});var k=function(t,e,i,n,r,a){h.call(this,t,e,i,n,r),this.base_color_fn=a,this.divider_height=1};r.extend(k.prototype,h.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"Squish"===t?5:10},get_required_height:function(t){var e=this.prefs.summary_height;return t>1&&this.prefs.show_sample_data&&(e+=this.divider_height+t*this.get_row_height()),e},draw:function(t,e,i,n){t.save();var a,o,s,l,c,u,h,d,f,p,m,v=function(t,e){var i=t.length,n=e.length,r=0,a=1,o=null;return"-"===e?(o="deletion",a=t.length):0===t.indexOf(e)&&i>n?(o="deletion",a=i-n,r=n):0===e.indexOf(t)&&i<n&&(o="insertion",a=n-i,r=n),null!==o?{type:o,start:r,len:a}:{}},g=Math.max(1,Math.floor(n)),_=this.data.length?this.data[0][7].split(",").length:0,y="Squish"===this.mode?5:10,b=n<.1?y:"Squish"===this.mode?3:9,w=!0,k=new x(t,y,n,this.mode);1===_&&(y=b=n<t.canvas.manager.char_width_px?this.prefs.summary_height:y,k.row_height=y,w=!1),this.prefs.show_sample_data&&w&&(t.fillStyle="#F3F3F3",t.globalAlpha=1,t.fillRect(0,this.prefs.summary_height-this.divider_height,e,this.divider_height)),t.textAlign="center";for(var C=0;C<this.data.length;C++)if(a=this.data[C],o=a[1],s=a[3],l=[a[4].split(",")],c=a[7].split(","),u=a.slice(8),l=r.map(r.flatten(l),function(t){var e={type:"snp",value:t,start:0},i=v(s,t);return r.extend(e,i)}),!(o<this.view_start||o>this.view_end)){if(w)for(t.fillStyle="#999999",t.globalAlpha=1,m=0;m<l.length;m++)for(d=this.get_start_draw_pos(o+l[m].start,n),t.fillRect(d,0,g,this.prefs.summary_height),f=this.prefs.summary_height,m=0;m<l.length;m++){t.fillStyle="deletion"===l[m].type?"black":this.base_color_fn(l[m].value);var S=u/c.length,T=Math.ceil(this.prefs.summary_height*S);t.fillRect(d,f-T,g,T),f-=T}if(this.prefs.show_sample_data)for(f=w?this.prefs.summary_height+this.divider_height:0,m=0;m<c.length;m++,f+=y)if(p=c[m]?c[m].split(/\/|\|/):["0","0"],h=null,p[0]===p[1]?"."===p[0]||"0"!==p[0]&&(h=l[parseInt(p[0],10)-1],t.globalAlpha=1):(h="0"!==p[0]?p[0]:p[1],h=l[parseInt(h,10)-1],t.globalAlpha=.5),h)if(d=this.get_start_draw_pos(o+h.start,n),"snp"===h.type){var A=h.value;t.fillStyle=this.base_color_fn(A),k.draw_details?t.fillText(A,this.get_draw_pos(o,n),f+y):t.fillRect(d,f+1,g,b)}else"deletion"===h.type&&k.draw_deletion(d,f+1,h.len)}t.restore()}}),e.default={Scaler:c,LinePainter:d,LinkedFeaturePainter:m,ReadPainter:v,ArcLinkedFeaturePainter:g,DiagonalHeatmapPainter:w,VariantPainter:k}},function(t,e,i){"use strict";(function(t){Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=r.extend,o=function(t){this.manager=null,this.name=t.name,this.index=t.index,this.tool_id=t.tool_id,this.tool_exp_name=t.tool_exp_name};a(o.prototype,{to_dict:function(){return{name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name}}});var s=function(e,i,n){return t("<a/>").attr("href","javascript:void(0);").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(n)},l=function(e){o.call(this,e),this.low="low"in e?e.low:-Number.MAX_VALUE,this.high="high"in e?e.high:Number.MAX_VALUE,this.min="min"in e?e.min:Number.MAX_VALUE,this.max="max"in e?e.max:-Number.MAX_VALUE,this.container=null,this.slider=null,this.slider_label=null;var i=this;i.parent_div=t("<div/>").addClass("filter-row slider-row");var n=t("<div/>").addClass("elt-label").appendTo(i.parent_div),r=(t("<span/>").addClass("slider-name").text(i.name+"  ").appendTo(n),t("<span/>").text(this.low+"-"+this.high)),a=t("<span/>").addClass("slider-value").appendTo(n).append("[").append(r).append("]");i.values_span=r;var l=t("<div/>").addClass("slider").appendTo(i.parent_div);i.control_element=t("<div/>").attr("id",i.name+"-filter-control").appendTo(l),i.control_element.slider({range:!0,min:this.min,max:this.max,step:this.get_slider_step(this.min,this.max),values:[this.low,this.high],slide:function(t,e){i.slide(t,e)},change:function(t,e){i.control_element.slider("option","slide").call(i.control_element,t,e)}}),i.slider=i.control_element,i.slider_label=r,function(e,i,n){e.click(function(){var e=i.text(),r=parseFloat(n.slider("option","max")),a=r<=1?4:r<=1e6?r.toString().length:6,o=!1,s=t(this).parents(".slider-row");s.addClass("input"),n.slider("option","values")&&(a=2*a+1,o=!0),i.text(""),t("<input type='text'/>").attr("size",a).attr("maxlength",a).attr("value",e).appendTo(i).focus().select().click(function(t){t.stopPropagation()}).blur(function(){t(this).remove(),i.text(e),s.removeClass("input")}).keyup(function(e){if(27===e.keyCode)t(this).trigger("blur");else if(13===e.keyCode){var i=n.slider("option","min"),r=n.slider("option","max"),a=function(t){return isNaN(t)||t>r||t<i},l=t(this).val();if(o){if(l=l.split("-"),l=[parseFloat(l[0]),parseFloat(l[1])],a(l[0])||a(l[1]))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this)}else if(l=parseFloat(l),a(l))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this);n.slider(o?"values":"value",l),s.removeClass("input")}})})}(a,r,i.control_element);var c=t("<div/>").addClass("display-controls").appendTo(i.parent_div);this.transparency_icon=s("Use filter for data transparency","layer-transparent",function(){i.manager.alpha_filter!==i?(i.manager.alpha_filter=i,i.manager.parent_div.find(".layer-transparent").removeClass("active").hide(),i.transparency_icon.addClass("active").show()):(i.manager.alpha_filter=null,i.transparency_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(c).hide(),this.height_icon=s("Use filter for data height","arrow-resize-090",function(){i.manager.height_filter!==i?(i.manager.height_filter=i,i.manager.parent_div.find(".arrow-resize-090").removeClass("active").hide(),i.height_icon.addClass("active").show()):(i.manager.height_filter=null,i.height_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(c).hide(),i.parent_div.hover(function(){i.transparency_icon.show(),i.height_icon.show()},function(){i.manager.alpha_filter!==i&&i.transparency_icon.hide(),i.manager.height_filter!==i&&i.height_icon.hide()}),t("<div style='clear: both;'/>").appendTo(i.parent_div)};a(l.prototype,{to_dict:function(){var t=o.prototype.to_dict.call(this);return a(t,{type:"number",min:this.min,max:this.max,low:this.low,high:this.high})},copy:function(){return new l({name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name})},get_slider_step:function(t,e){return e-t<=2?.01:1},slide:function(t,e){var i=e.values;this.values_span.text(i[0]+"-"+i[1]),this.low=i[0],this.high=i[1];var n=this;setTimeout(function(){i[0]===n.low&&i[1]===n.high&&n.manager.track.request_draw({force:!0,clear_after:!0})},25)},applies_to:function(t){return t.length>this.index},_keep_val:function(t){return isNaN(t)||t>=this.low&&t<=this.high},keep:function(t){if(!this.applies_to(t))return!0;var e=t[this.index];if(e instanceof Array){for(var i=!0,n=0;n<e.length;n++)if(!this._keep_val(e[n])){i=!1;break}return i}return this._keep_val(t[this.index])},update_attrs:function(t){var e=!1;if(!this.applies_to(t))return e;var i=t[this.index];i instanceof Array||(i=[i]);for(var n=0;n<i.length;n++){var r=i[n];r<this.min&&(this.min=Math.floor(r),e=!0),r>this.max&&(this.max=Math.ceil(r),e=!0)}return e},update_ui_elt:function(){this.min<this.max?this.parent_div.show():this.parent_div.hide();var t=this.slider.slider("option","min"),e=this.slider.slider("option","max");(this.min<t||this.max>e)&&(this.slider.slider("option","min",this.min),this.slider.slider("option","max",this.max),this.slider.slider("option","step",this.get_slider_step(this.min,this.max)),this.slider.slider("option","values",[this.min,this.max]))}});var c=function(e,i){if(this.track=e,this.alpha_filter=null,this.height_filter=null,this.filters=[],this.parent_div=t("<div/>").addClass("filters").hide(),this.parent_div.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).bind("keydown",function(t){t.stopPropagation()}),i&&"filters"in i){for(var n,r=("alpha_filter"in i?i.alpha_filter:null),a=("height_filter"in i?i.height_filter:null),o=i.filters,s=0;s<o.length;s++)"number"===o[s].type?(n=new l(o[s]),this.add_filter(n),n.name===r&&(this.alpha_filter=n,n.transparency_icon.addClass("active").show()),n.name===a&&(this.height_filter=n,n.height_icon.addClass("active").show())):console.log("ERROR: unsupported filter: ",name,type);"visible"in i&&i.visible&&this.parent_div.show()}if(0!==this.filters.length){var c=t("<div/>").addClass("param-row").appendTo(this.parent_div),u=this;t("<input type='submit'/>").attr("value","Run on complete dataset").appendTo(c).click(function(){u.run_on_dataset()})}};a(c.prototype,{show:function(){this.parent_div.show()},hide:function(){this.parent_div.hide()},toggle:function(){this.parent_div.toggle()},visible:function(){return this.parent_div.is(":visible")},to_dict:function(){for(var t,e={},i=[],n=0;n<this.filters.length;n++)t=this.filters[n],i.push(t.to_dict());return e.filters=i,e.alpha_filter=this.alpha_filter?this.alpha_filter.name:null,e.height_filter=this.height_filter?this.height_filter.name:null,e.visible=this.parent_div.is(":visible"),e},copy:function(t){for(var e=new c(t),i=0;i<this.filters.length;i++)e.add_filter(this.filters[i].copy());return e},add_filter:function(t){t.manager=this,this.parent_div.append(t.parent_div),this.filters.push(t)},remove_all:function(){this.filters=[],this.parent_div.children().remove()},init_filters:function(){for(var t=0;t<this.filters.length;t++){this.filters[t].update_ui_elt()}},clear_filters:function(){for(var t=0;t<this.filters.length;t++){var e=this.filters[t];e.slider.slider("option","values",[e.min,e.max])}this.alpha_filter=null,this.height_filter=null,this.parent_div.find(".icon-button").hide()},run_on_dataset:function(){for(var e,i,n=(function(t,e,i){return e in t||(t[e]=i),t[e]}),r={},a=0;a<this.filters.length;a++)e=this.filters[a],e.tool_id&&(e.min!==e.low&&(i=n(r,e.tool_id,[]),i[i.length]=e.tool_exp_name+" >= "+e.low),e.max!==e.high&&(i=n(r,e.tool_id,[]),i[i.length]=e.tool_exp_name+" <= "+e.high));var o=[];for(var s in r)o[o.length]=[s,r[s]];!function e(i,n){var r=n[0],a=r[0],o=r[1],s="("+o.join(") and (")+")",l={cond:s,input:i,target_dataset_id:i,tool_id:a};n=n.slice(1),t.getJSON(run_tool_url,l,function(t){t.error?Galaxy.modal.show({title:"Filter Dataset",body:"Error running tool "+a,buttons:{Close:Galaxy.modal.hide()}}):0===n.length?Galaxy.modal.show({title:"Filtering Dataset",body:"Filter(s) are running on the complete dataset. Outputs are in dataset's history.",buttons:{Close:Galaxy.modal.hide()}}):e(t.dataset_id,n)})}(this.track.dataset_id,o)}}),e.default={FiltersManager:c,NumberFilter:l}}).call(e,i(0))},function(t,e,i){"use strict";(function(t,n,r,a){function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var s=i(3),l=o(s),c=i(6),u=(o(c),i(38)),h=o(u),d=i(154),f=o(d),p=i(155),m=o(p),v=i(156),g=o(v),_=t.View.extend({initialize:function(t,e){this.app=t,this.inputs=e.inputs,this.parameters=new g.default,this.setElement(n("<div/>")),this.render()},render:function(){var t=this;this.$el.empty(),r.each(this.inputs,function(e){t.add(e)})},add:function(t){var e=a.extend(!0,{},t);switch(e.id=t.id=l.default.uid(),this.app.input_list[e.id]=e,e.type){case"conditional":this._addConditional(e);break;case"repeat":this._addRepeat(e);break;case"section":this._addSection(e);break;default:this._addRow(e)}},_addConditional:function(t){var e=this;t.test_param.id=t.id,this.app.model.get("sustain_conditionals")&&(t.test_param.disabled=!0);var i=this._addRow(t.test_param);i.model&&i.model.set("onchange",function(i){var n=e.app.data.matchCase(t,i);for(var r in t.cases){var a=t.cases[r],o=e.$("#"+t.id+"-section-"+r),s=!1;for(var l in a.inputs)if(!a.inputs[l].hidden){s=!0;break}r==n&&s?o.fadeIn("fast"):o.hide()}e.app.trigger("change")});for(var n in t.cases){var r=new _(this.app,{inputs:t.cases[n].inputs});this._append(r.$el.addClass("ui-form-section"),t.id+"-section-"+n)}i.trigger("change")},_addRepeat:function(t){function e(e){var r=t.id+"-section-"+n++,o=new _(i.app,{inputs:e});a.add({id:r,$el:o.$el,ondel:function(){a.del(r),i.app.trigger("change")}})}for(var i=this,n=0,a=new f.default.View({title:t.title||"Repeat",min:t.min,max:t.max,onnew:function(){e(t.inputs),i.app.trigger("change")}}),o=r.size(t.cache),s=0;s<Math.max(Math.max(o,t.min||0),t.default||0);s++)e(s<o?t.cache[s]:t.inputs);this.app.model.get("sustain_repeats")&&a.hideOptions();var l=new m.default(this.app,{label:t.title||t.name,help:t.help,field:a});this._append(l.$el,t.id)},_addSection:function(t){var e=new h.default.View({title:t.title||t.name,cls:"ui-portlet-section",collapsible:!0,collapsible_button:!0,collapsed:!t.expanded});e.append(new _(this.app,{inputs:t.inputs}).$el),e.append(n("<div/>").addClass("ui-form-info").html(t.help)),this.app.on("expand",function(t){e.$("#"+t).length>0&&e.expand()}),this._append(e.$el,t.id)},_addRow:function(t){var e=this,i=t.id;t.onchange=t.onchange||function(){e.app.trigger("change",i)};var n=this.parameters.create(t);this.app.field_list[i]=n;var r=new m.default(this.app,{name:t.name,label:t.hide_label?"":t.label||t.name,value:t.value,text_value:t.text_value,collapsible_value:t.collapsible_value,collapsible_preview:t.collapsible_preview,help:t.help,argument:t.argument,disabled:t.disabled,color:t.color,style:t.style,backdrop:t.backdrop,hidden:t.hidden,fixed:t.fixed,field:n});return this.app.element_list[i]=r,this._append(r.$el,t.id),n},_append:function(t,e){this.$el.append(t.addClass("section-row").attr("id",e))}});e.default={View:_}}).call(e,i(2),i(0),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0}),e.View=void 0;var o=i(3),s=a(o),l=i(38),c=a(l),u=i(6),h=a(u),d=e.View=t.View.extend({initialize:function(t){this.list={},this.options=s.default.merge(t,{title:"Repeat",empty_text:"Not available.",max:null,min:null}),this.button_new=new h.default.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title,tooltip:"Add new "+this.options.title+" block",cls:"ui-button-icon ui-clear-float form-repeat-add",onclick:function(){t.onnew&&t.onnew()}}),this.setElement(n("<div/>").append(this.$list=n("<div/>")).append(n("<div/>").append(this.button_new.$el)))},size:function(){return r.size(this.list)},add:function(t){if(!t.id||this.list[t.id])return void Galaxy.emit.debug("form-repeat::add()","Duplicate or invalid repeat block id.");var e=new h.default.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain form-repeat-delete",onclick:function(){t.ondel&&t.ondel()}}),i=new c.default.View({id:t.id,title:"placeholder",cls:t.cls||"ui-portlet-repeat",operations:{button_delete:e}});i.append(t.$el),i.$el.addClass("section-row").hide(),this.list[t.id]=i,this.$list.append(i.$el.fadeIn("fast")),this.options.max>0&&this.size()>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(t){if(!this.list[t])return void Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.");this.$list.find("#"+t).remove(),delete this.list[t],this.button_new.enable(),this._refresh()},delAll:function(){for(var t in this.list)this.del(t)},hideOptions:function(){this.button_new.$el.hide(),r.each(this.list,function(t){t.hideOperation("button_delete")}),r.isEmpty(this.list)&&this.$el.append(n("<div/>").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),i[this.size()>this.options.min?"showOperation":"hideOperation"]("button_delete")}}});e.default={View:d}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,i,n){Object.defineProperty(e,"__esModule",{value:!0}),e.default=t.View.extend({initialize:function(e,i){this.app=e,this.app_options=e.model?e.model.attributes:{},this.field=i&&i.field||new t.View,this.model=i&&i.model||new t.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up",always_refresh:this.app_options.always_refresh}).set(i),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var n=this.model.get("collapsible_value");this.field.collapsed=void 0!==n&&JSON.stringify(this.model.get("value"))==JSON.stringify(n),this.listenTo(this.model,"change",this.render,this),this.render();var r=this;this.$collapsible.on("click",function(){r.field.collapsed=!r.field.collapsed,e.trigger&&e.trigger("change"),r.render()}),this.field.model&&!this.model.get("always_refresh")&&this.listenTo(this.field.model,"change:value",function(){r.reset()})},backdrop:function(){this.model.set("backdrop",!0)},error:function(t){this.model.set("error_text",t)},reset:function(){!this.model.get("fixed")&&this.model.set("error_text",null)},render:function(){i(".tooltip").hide();var t=this.model.get("help",""),e=this.model.get("argument");e&&-1==t.indexOf("("+e+")")&&(t+=" ("+e+")"),this.$info.html(t),this.$el[this.model.get("hidden")?"hide":"show"](),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")||this.model.get("disabled")?"show":"hide"]().html(n.escape(this.model.get("text_value")));var r=this.model.get("error_text");if(this.$error[r?"show":"hide"](),this.$el[r?"addClass":"removeClass"]("ui-error"),this.$error_text.html(r),this.$backdrop[this.model.get("backdrop")?"show":"hide"](),this.field.collapsed||this.model.get("disabled")?this.$field.hide():this.$field.show(),this.field.model&&this.field.model.set({color:this.model.get("color"),style:this.model.get("style")}),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var a=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+a)).attr("data-original-title",this.model.get("text_"+a)).tooltip({placement:"bottom"})}},_template:function(){return i("<div/>").addClass("ui-form-element").append(i("<div/>").addClass("ui-form-error ui-error").append(i("<span/>").addClass("fa fa-arrow-down")).append(i("<span/>").addClass("ui-form-error-text"))).append(i("<div/>").addClass("ui-form-title").append(i("<div/>").addClass("ui-form-collapsible").append(i("<i/>").addClass("ui-form-collapsible-icon")).append(i("<span/>").addClass("ui-form-collapsible-text"))).append(i("<span/>").addClass("ui-form-title-text"))).append(i("<div/>").addClass("ui-form-field").append(i("<span/>").addClass("ui-form-info")).append(i("<div/>").addClass("ui-form-backdrop"))).append(i("<div/>").addClass("ui-form-preview"))}})}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(6),c=a(l),u=i(157),h=a(u),d=i(158),f=a(d),p=i(159),m=a(p),v=i(160),g=a(v),_=i(162),y=a(_);e.default=t.Model.extend({types:{text:"_fieldText",password:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider",float:"_fieldSlider",boolean:"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp",upload:"_fieldUpload",genomespacefile:"_fieldGenomeSpace"},create:function(t){var e=this.types[t.type],i="function"==typeof this[e]?this[e].call(this,t):null;return i||(i=t.options?this._fieldSelect(t):this._fieldText(t),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+t.type+").")),void 0===t.value&&(t.value=null),i.value(t.value),i},_fieldData:function(t){return new h.default.View({id:"field-"+t.id,extensions:t.extensions,optional:t.optional,multiple:t.multiple,type:t.type,flavor:t.flavor,data:t.options,onchange:t.onchange})},_fieldSelect:function(t){if(t.is_workflow)return this._fieldText(t);"data_column"==t.type&&(t.error_text="Missing columns in referenced dataset.");var e=t.data;e||(e=[],n.each(t.options,function(t){e.push({label:t[0],value:t[1]})}));var i=c.default.Select;switch(t.display){case"checkboxes":i=c.default.Checkbox;break;case"radio":i=c.default.Radio;break;case"radiobutton":i=c.default.RadioButton}return new i.View({id:"field-"+t.id,data:e,error_text:t.error_text||"No options available",readonly:t.readonly,multiple:t.multiple,optional:t.optional,onchange:t.onchange,individual:t.individual,searchable:"workflow"!==t.flavor})},_fieldDrilldown:function(t){return t.is_workflow?this._fieldText(t):new c.default.Drilldown.View({id:"field-"+t.id,data:t.options,display:t.display,optional:t.optional,onchange:t.onchange})},_fieldText:function(t){if(t.options&&t.data)if(t.area=t.multiple,s.default.isEmpty(t.value))t.value=null;else if(r.isArray(t.value)){var e="";for(var i in t.value){if(e+=String(t.value[i]),!t.multiple)break;e+="\n"}t.value=e}return new c.default.Input({id:"field-"+t.id,type:t.type,area:t.area,readonly:t.readonly,placeholder:t.placeholder,datalist:t.datalist,onchange:t.onchange})},_fieldSlider:function(t){return new c.default.Slider.View({id:"field-"+t.id,precise:"float"==t.type,is_workflow:t.is_workflow,min:t.min,max:t.max,onchange:t.onchange})},_fieldHidden:function(t){return new c.default.Hidden({id:"field-"+t.id,info:t.info})},_fieldBoolean:function(t){return new c.default.RadioButton.View({id:"field-"+t.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:t.onchange})},_fieldColor:function(t){return new y.default({id:"field-"+t.id,onchange:t.onchange})},_fieldLibrary:function(t){return new f.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldFtp:function(t){return new m.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldGenomeSpace:function(t){var e=this;return new g.default.View({id:"field-"+t.id,onchange:function(){e.app.trigger("change")}})},_fieldUpload:function(t){return new c.default.Upload({id:"field-"+t.id,onchange:t.onchange})}})}).call(e,i(2),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(6),c=a(l),u=i(82),h=a(u),d={DISABLED:"disabled",ENABLED:"enabled",LINKED:"linked"},f={data:[{src:"hda",icon:"fa-file-o",tooltip:"Single dataset",multiple:!1,batch:d.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:"Multiple datasets",multiple:!0,batch:d.LINKED},{src:"hdca",icon:"fa-folder-o",tooltip:"Dataset collection",multiple:!1,batch:d.LINKED}],data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:"Multiple datasets",multiple:!0,batch:d.DISABLED},{src:"hdca",icon:"fa-folder-o",tooltip:"Dataset collections",multiple:!0,batch:d.DISABLED}],data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:"Dataset collection",multiple:!1,batch:d.DISABLED}],workflow_data:[{src:"hda",icon:"fa-file-o",tooltip:"Single dataset",multiple:!1,batch:d.DISABLED}],workflow_data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:"Multiple datasets",multiple:!0,batch:d.DISABLED}],workflow_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:"Dataset collection",multiple:!1,batch:d.DISABLED}],module_data:[{src:"hda",icon:"fa-file-o",tooltip:"Single dataset",multiple:!1,batch:d.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:"Multiple datasets",multiple:!0,batch:d.ENABLED}],module_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:"Dataset collection",multiple:!1,batch:d.DISABLED},{src:"hdca",icon:"fa-folder",tooltip:"Multiple collections",multiple:!0,batch:d.ENABLED}]},p=t.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new t.Model({src_labels:{hda:"dataset",hdca:"dataset collection"},pagelimit:100,statustimer:1e3}).set(e),this.setElement(n("<div/>").addClass("ui-select-content")),this.button_product=new c.default.RadioButton.View({value:"false",data:[{icon:"fa fa-chain",value:"false",tooltip:"Linked inputs will be run in matched order with other datasets e.g. use this for matching forward and reverse reads."},{icon:"fa fa-chain-broken",value:"true",tooltip:"Unlinked dataset inputs will be run against *all* other inputs."}]});var r=n("<div/>").addClass("ui-form-info").append(n("<i/>").addClass("fa fa-sitemap")).append(n("<span/>").html("This is a batch mode input field. Separate jobs will be triggered for each dataset selection."));this.$batch={linked:r.clone(),enabled:r.clone().append(n("<div/>").append(n("<div/>").addClass("ui-form-title").html("Batch options:")).append(this.button_product.$el)).append(n("<div/>").css("clear","both"))},this.$el.on("dragenter",function(t){this.lastenter=t.target,i.$el.addClass("ui-dragover")}).on("dragover",function(t){t.preventDefault()}).on("dragleave",function(t){this.lastenter===t.target&&i.$el.removeClass("ui-dragover")}).on("drop",function(t){i._handleDrop(t)}),this.history={},this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:current",this._changeCurrent,this),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:type change:optional change:multiple change:extensions",this._changeType,this),this.render(),this.on("change",function(){e.onchange&&e.onchange(i.value())})},render:function(){this._changeType(),this._changeValue(),this._changeWait()},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},update:function(t){this.model.set("data",t)},value:function(t){void 0!==t&&this.model.set("value",t);var e=this.model.get("current");if(this.config[e]){var i=this.fields[e].value();if(null!==i&&(i=n.isArray(i)?i:[i],i.length>0)){var r=this._batch({values:[]});for(var a in i){var o=this.history[i[a]+"_"+this.config[e].src];if(!o)return Galaxy.emit.debug("ui-select-content::value()","Requested details not found for '"+i[a]+"'."),null;r.values.push(o)}return r.values.sort(function(t,e){return t.hid-e.hid}),r}}else Galaxy.emit.debug("ui-select-content::value()","Invalid value/source '"+t+"'.");return null},_changeCurrent:function(){var 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r=this;this.options=n,this.cacheData_={},this.cacheLength_=0,this.selectClass_="jquery-autocomplete-selected-item",this.keyTimeout_=null,this.finishTimeout_=null,this.lastKeyPressed_=null,this.lastProcessedValue_=null,this.lastSelectedValue_=null,this.active_=!1,this.finishOnBlur_=!0,this.options.minChars=i(this.options.minChars,t.fn.autocomplete_verheul.defaults.minChars,{min:0}),this.options.maxItemsToShow=i(this.options.maxItemsToShow,t.fn.autocomplete_verheul.defaults.maxItemsToShow,{min:0}),this.options.maxCacheLength=i(this.options.maxCacheLength,t.fn.autocomplete_verheul.defaults.maxCacheLength,{min:1}),this.options.delay=i(this.options.delay,t.fn.autocomplete_verheul.defaults.delay,{min:0}),2!=this.options.preventDefaultReturn&&(this.options.preventDefaultReturn=this.options.preventDefaultReturn?1:0),2!=this.options.preventDefaultTab&&(this.options.preventDefaultTab=this.options.preventDefaultTab?1:0),this.dom={},this.dom.$elem=e,this.dom.$elem.attr("autocomplete","off").addClass(this.options.inputClass),this.dom.$results=t("<div></div>").hide().addClass(this.options.resultsClass).css({position:"absolute"}),t("body").append(this.dom.$results),e.keydown(function(t){switch(r.lastKeyPressed_=t.keyCode,r.lastKeyPressed_){case 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$(t,e,i,n)};else{if(!o.namespaces||o.namespaces.v)return t.fn.sparkline.canvas=!1,!1;o.namespaces.add("v","urn:schemas-microsoft-com:vml","#default#VML"),t.fn.sparkline.canvas=function(t,e,i,n){return new D(t,e,i)}}}return void 0===e&&(e=t(this).innerWidth()),void 0===i&&(i=t(this).innerHeight()),a=t.fn.sparkline.canvas(e,i,this,r),s=t(this).data("_jqs_mhandler"),s&&s.registerCanvas(a),a},t.fn.cleardraw=function(){var t=this.data("_jqs_vcanvas");t&&t.reset()},t.RangeMapClass=v=i({init:function(t){var e,i,n=[];for(e in t)t.hasOwnProperty(e)&&"string"==typeof e&&e.indexOf(":")>-1&&(i=e.split(":"),i[0]=0===i[0].length?-1/0:parseFloat(i[0]),i[1]=0===i[1].length?1/0:parseFloat(i[1]),i[2]=t[e],n.push(i));this.map=t,this.rangelist=n||!1},get:function(t){var e,i,n,r=this.rangelist;if(void 0!==(n=this.map[t]))return n;if(r)for(e=r.length;e--;)if(i=r[e],i[0]<=t&&i[1]>=t)return i[2]}}),t.range_map=function(t){return new v(t)},g=i({init:function(e,i){var n=t(e);this.$el=n,this.options=i,this.currentPageX=0,this.currentPageY=0,this.el=e,this.splist=[],this.tooltip=null,this.over=!1,this.displayTooltips=!i.get("disableTooltips"),this.highlightEnabled=!i.get("disableHighlight")},registerSparkline:function(t){this.splist.push(t),this.over&&this.updateDisplay()},registerCanvas:function(e){var i=t(e.canvas);this.canvas=e,this.$canvas=i,i.mouseenter(t.proxy(this.mouseenter,this)),i.mouseleave(t.proxy(this.mouseleave,this)),i.click(t.proxy(this.mouseclick,this))},reset:function(t){this.splist=[],this.tooltip&&t&&(this.tooltip.remove(),this.tooltip=void 0)},mouseclick:function(e){var i=t.Event("sparklineClick");i.originalEvent=e,i.sparklines=this.splist,this.$el.trigger(i)},mouseenter:function(e){t(o.body).unbind("mousemove.jqs"),t(o.body).bind("mousemove.jqs",t.proxy(this.mousemove,this)),this.over=!0,this.currentPageX=e.pageX,this.currentPageY=e.pageY,this.currentEl=e.target,!this.tooltip&&this.displayTooltips&&(this.tooltip=new _(this.options),this.tooltip.updatePosition(e.pageX,e.pageY)),this.updateDisplay()},mouseleave:function(){t(o.body).unbind("mousemove.jqs");var e,i,n=this.splist,r=n.length,a=!1;for(this.over=!1,this.currentEl=null,this.tooltip&&(this.tooltip.remove(),this.tooltip=null),i=0;i<r;i++)e=n[i],e.clearRegionHighlight()&&(a=!0);a&&this.canvas.render()},mousemove:function(t){this.currentPageX=t.pageX,this.currentPageY=t.pageY,this.currentEl=t.target,this.tooltip&&this.tooltip.updatePosition(t.pageX,t.pageY),this.updateDisplay()},updateDisplay:function(){var e,i,n,r,a,o=this.splist,s=o.length,l=!1,u=this.$canvas.offset(),c=this.currentPageX-u.left,h=this.currentPageY-u.top;if(this.over){for(n=0;n<s;n++)i=o[n],(r=i.setRegionHighlight(this.currentEl,c,h))&&(l=!0);if(l){if(a=t.Event("sparklineRegionChange"),a.sparklines=this.splist,this.$el.trigger(a),this.tooltip){for(e="",n=0;n<s;n++)i=o[n],e+=i.getCurrentRegionTooltip();this.tooltip.setContent(e)}this.disableHighlight||this.canvas.render()}null===r&&this.mouseleave()}}}),_=i({sizeStyle:"position: static !important;display: block !important;visibility: hidden !important;float: left !important;",init:function(e){var i,n=e.get("tooltipClassname","jqstooltip"),r=this.sizeStyle;this.container=e.get("tooltipContainer")||o.body,this.tooltipOffsetX=e.get("tooltipOffsetX",10),this.tooltipOffsetY=e.get("tooltipOffsetY",12),t("#jqssizetip").remove(),t("#jqstooltip").remove(),this.sizetip=t("<div/>",{id:"jqssizetip",style:r,class:n}),this.tooltip=t("<div/>",{id:"jqstooltip",class:n}).appendTo(this.container),i=this.tooltip.offset(),this.offsetLeft=i.left,this.offsetTop=i.top,this.hidden=!0,t(window).unbind("resize.jqs scroll.jqs"),t(window).bind("resize.jqs scroll.jqs",t.proxy(this.updateWindowDims,this)),this.updateWindowDims()},updateWindowDims:function(){this.scrollTop=t(window).scrollTop(),this.scrollLeft=t(window).scrollLeft(),this.scrollRight=this.scrollLeft+t(window).width(),this.updatePosition()},getSize:function(t){this.sizetip.html(t).appendTo(this.container),this.width=this.sizetip.width()+1,this.height=this.sizetip.height(),this.sizetip.remove()},setContent:function(t){if(!t)return this.tooltip.css("visibility","hidden"),void(this.hidden=!0);this.getSize(t),this.tooltip.html(t).css({width:this.width,height:this.height,visibility:"visible"}),this.hidden&&(this.hidden=!1,this.updatePosition())},updatePosition:function(t,e){if(void 0===t){if(void 0===this.mousex)return;t=this.mousex-this.offsetLeft,e=this.mousey-this.offsetTop}else this.mousex=t-=this.offsetLeft,this.mousey=e-=this.offsetTop;this.height&&this.width&&!this.hidden&&(e-=this.height+this.tooltipOffsetY,t+=this.tooltipOffsetX,e<this.scrollTop&&(e=this.scrollTop),t<this.scrollLeft?t=this.scrollLeft:t+this.width>this.scrollRight&&(t=this.scrollRight-this.width),this.tooltip.css({left:t,top:e}))},remove:function(){this.tooltip.remove(),this.sizetip.remove(),this.sizetip=this.tooltip=void 0,t(window).unbind("resize.jqs scroll.jqs")}}),A=function(){f(M)},t(A),j=[],t.fn.sparkline=function(e,i){return this.each(function(){var n,r,a=new t.fn.sparkline.options(this,i),s=t(this);if(n=function(){var i,n,r,l,u,c,h;if("html"===e||void 0===e?(h=this.getAttribute(a.get("tagValuesAttribute")),void 0!==h&&null!==h||(h=s.html()),i=h.replace(/(^\s*<!--)|(-->\s*$)|\s+/g,"").split(",")):i=e,n="auto"===a.get("width")?i.length*a.get("defaultPixelsPerValue"):a.get("width"),"auto"===a.get("height")?a.get("composite")&&t.data(this,"_jqs_vcanvas")||(l=o.createElement("span"),l.innerHTML="a",s.html(l),r=t(l).innerHeight()||t(l).height(),t(l).remove(),l=null):r=a.get("height"),a.get("disableInteraction")?u=!1:(u=t.data(this,"_jqs_mhandler"),u?a.get("composite")||u.reset():(u=new g(this,a),t.data(this,"_jqs_mhandler",u))),a.get("composite")&&!t.data(this,"_jqs_vcanvas"))return void(t.data(this,"_jqs_errnotify")||(alert("Attempted to attach a composite sparkline to an element with no existing sparkline"),t.data(this,"_jqs_errnotify",!0)));c=new(t.fn.sparkline[a.get("type")])(this,i,a,n,r),c.render(),u&&u.registerSparkline(c)},t(this).html()&&!a.get("disableHiddenCheck")&&t(this).is(":hidden")||!t(this).parents("body").length){if(!a.get("composite")&&t.data(this,"_jqs_pending"))for(r=j.length;r;r--)j[r-1][0]==this&&j.splice(r-1,1);j.push([this,n]),t.data(this,"_jqs_pending",!0)}else n.call(this)})},t.fn.sparkline.defaults=e(),t.sparkline_display_visible=function(){var e,i,n,r=[];for(i=0,n=j.length;i<n;i++)e=j[i][0],t(e).is(":visible")&&!t(e).parents().is(":hidden")?(j[i][1].call(e),t.data(j[i][0],"_jqs_pending",!1),r.push(i)):t(e).closest("html").length||t.data(e,"_jqs_pending")||(t.data(j[i][0],"_jqs_pending",!1),r.push(i));for(i=r.length;i;i--)j.splice(r[i-1],1)},t.fn.sparkline.options=i({init:function(e,i){var n,r,a,o;this.userOptions=i=i||{},this.tag=e,this.tagValCache={},r=t.fn.sparkline.defaults,a=r.common,this.tagOptionsPrefix=i.enableTagOptions&&(i.tagOptionsPrefix||a.tagOptionsPrefix),o=this.getTagSetting("type"),n=o===P?r[i.type||a.type]:r[o],this.mergedOptions=t.extend({},a,n,i)},getTagSetting:function(t){var e,i,n,r,a=this.tagOptionsPrefix;if(!1===a||void 0===a)return P;if(this.tagValCache.hasOwnProperty(t))e=this.tagValCache.key;else{if(void 0===(e=this.tag.getAttribute(a+t))||null===e)e=P;else if("["===e.substr(0,1))for(e=e.substr(1,e.length-2).split(","),i=e.length;i--;)e[i]=l(e[i].replace(/(^\s*)|(\s*$)/g,""));else if("{"===e.substr(0,1))for(n=e.substr(1,e.length-2).split(","),e={},i=n.length;i--;)r=n[i].split(":",2),e[r[0].replace(/(^\s*)|(\s*$)/g,"")]=l(r[1].replace(/(^\s*)|(\s*$)/g,""));else e=l(e);this.tagValCache.key=e}return e},get:function(t,e){var i,n=this.getTagSetting(t);return n!==P?n:void 0===(i=this.mergedOptions[t])?e:i}}),t.fn.sparkline._base=i({disabled:!1,init:function(e,i,n,r,a){this.el=e,this.$el=t(e),this.values=i,this.options=n,this.width=r,this.height=a,this.currentRegion=void 0},initTarget:function(){var t=!this.options.get("disableInteraction");(this.target=this.$el.simpledraw(this.width,this.height,this.options.get("composite"),t))?(this.canvasWidth=this.target.pixelWidth,this.canvasHeight=this.target.pixelHeight):this.disabled=!0},render:function(){return!this.disabled||(this.el.innerHTML="",!1)},getRegion:function(t,e){},setRegionHighlight:function(t,e,i){var n,r=this.currentRegion,a=!this.options.get("disableHighlight");return e>this.canvasWidth||i>this.canvasHeight||e<0||i<0?null:(n=this.getRegion(t,e,i),r!==n&&(void 0!==r&&a&&this.removeHighlight(),this.currentRegion=n,void 0!==n&&a&&this.renderHighlight(),!0))},clearRegionHighlight:function(){return void 0!==this.currentRegion&&(this.removeHighlight(),this.currentRegion=void 0,!0)},renderHighlight:function(){this.changeHighlight(!0)},removeHighlight:function(){this.changeHighlight(!1)},changeHighlight:function(t){},getCurrentRegionTooltip:function(){var e,i,r,a,o,s,l,u,c,h,d,f,p,m,v=this.options,g="",_=[];if(void 0===this.currentRegion)return"";if(e=this.getCurrentRegionFields(),d=v.get("tooltipFormatter"))return d(this,v,e);if(v.get("tooltipChartTitle")&&(g+='<div class="jqs jqstitle">'+v.get("tooltipChartTitle")+"</div>\n"),!(i=this.options.get("tooltipFormat")))return"";if(t.isArray(i)||(i=[i]),t.isArray(e)||(e=[e]),l=this.options.get("tooltipFormatFieldlist"),u=this.options.get("tooltipFormatFieldlistKey"),l&&u){for(c=[],s=e.length;s--;)h=e[s][u],-1!=(m=t.inArray(h,l))&&(c[m]=e[s]);e=c}for(r=i.length,p=e.length,s=0;s<r;s++)for(f=i[s],"string"==typeof f&&(f=new n(f)),a=f.fclass||"jqsfield",m=0;m<p;m++)e[m].isNull&&v.get("tooltipSkipNull")||(t.extend(e[m],{prefix:v.get("tooltipPrefix"),suffix:v.get("tooltipSuffix")}),o=f.render(e[m],v.get("tooltipValueLookups"),v),_.push('<div class="'+a+'">'+o+"</div>"));return _.length?g+_.join("\n"):""},getCurrentRegionFields:function(){},calcHighlightColor:function(t,e){var i,n,a,o,l=e.get("highlightColor"),u=e.get("highlightLighten");if(l)return l;if(u&&(i=/^#([0-9a-f])([0-9a-f])([0-9a-f])$/i.exec(t)||/^#([0-9a-f]{2})([0-9a-f]{2})([0-9a-f]{2})$/i.exec(t))){for(a=[],n=4===t.length?16:1,o=0;o<3;o++)a[o]=r(s.round(parseInt(i[o+1],16)*n*u),0,255);return"rgb("+a.join(",")+")"}return t}}),y={changeHighlight:function(e){var i,n=this.currentRegion,r=this.target,a=this.regionShapes[n];a&&(i=this.renderRegion(n,e),t.isArray(i)||t.isArray(a)?(r.replaceWithShapes(a,i),this.regionShapes[n]=t.map(i,function(t){return t.id})):(r.replaceWithShape(a,i),this.regionShapes[n]=i.id))},render:function(){var e,i,n,r,a=this.values,o=this.target,s=this.regionShapes;if(this.cls._super.render.call(this)){for(n=a.length;n--;)if(e=this.renderRegion(n))if(t.isArray(e)){for(i=[],r=e.length;r--;)e[r].append(),i.push(e[r].id);s[n]=i}else e.append(),s[n]=e.id;else s[n]=null;o.render()}}},t.fn.sparkline.line=b=i(t.fn.sparkline._base,{type:"line",init:function(t,e,i,n,r){b._super.init.call(this,t,e,i,n,r),this.vertices=[],this.regionMap=[],this.xvalues=[],this.yvalues=[],this.yminmax=[],this.hightlightSpotId=null,this.lastShapeId=null,this.initTarget()},getRegion:function(t,e,i){var n,r=this.regionMap;for(n=r.length;n--;)if(null!==r[n]&&e>=r[n][0]&&e<=r[n][1])return r[n][2]},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:null===this.yvalues[t],x:this.xvalues[t],y:this.yvalues[t],color:this.options.get("lineColor"),fillColor:this.options.get("fillColor"),offset:t}},renderHighlight:function(){var t,e,i=this.currentRegion,n=this.target,r=this.vertices[i],a=this.options,o=a.get("spotRadius"),s=a.get("highlightSpotColor"),l=a.get("highlightLineColor");r&&(o&&s&&(t=n.drawCircle(r[0],r[1],o,void 0,s),this.highlightSpotId=t.id,n.insertAfterShape(this.lastShapeId,t)),l&&(e=n.drawLine(r[0],this.canvasTop,r[0],this.canvasTop+this.canvasHeight,l),this.highlightLineId=e.id,n.insertAfterShape(this.lastShapeId,e)))},removeHighlight:function(){var t=this.target;this.highlightSpotId&&(t.removeShapeId(this.highlightSpotId),this.highlightSpotId=null),this.highlightLineId&&(t.removeShapeId(this.highlightLineId),this.highlightLineId=null)},scanValues:function(){var t,e,i,n,r,a=this.values,o=a.length,l=this.xvalues,u=this.yvalues,c=this.yminmax;for(t=0;t<o;t++)e=a[t],i="string"==typeof a[t],n="object"==typeof a[t]&&a[t]instanceof Array,r=i&&a[t].split(":"),i&&2===r.length?(l.push(Number(r[0])),u.push(Number(r[1])),c.push(Number(r[1]))):n?(l.push(e[0]),u.push(e[1]),c.push(e[1])):(l.push(t),null===a[t]||"null"===a[t]?u.push(null):(u.push(Number(e)),c.push(Number(e))));this.options.get("xvalues")&&(l=this.options.get("xvalues")),this.maxy=this.maxyorg=s.max.apply(s,c),this.miny=this.minyorg=s.min.apply(s,c),this.maxx=s.max.apply(s,l),this.minx=s.min.apply(s,l),this.xvalues=l,this.yvalues=u,this.yminmax=c},processRangeOptions:function(){var t=this.options,e=t.get("normalRangeMin"),i=t.get("normalRangeMax");void 0!==e&&(e<this.miny&&(this.miny=e),i>this.maxy&&(this.maxy=i)),void 0!==t.get("chartRangeMin")&&(t.get("chartRangeClip")||t.get("chartRangeMin")<this.miny)&&(this.miny=t.get("chartRangeMin")),void 0!==t.get("chartRangeMax")&&(t.get("chartRangeClip")||t.get("chartRangeMax")>this.maxy)&&(this.maxy=t.get("chartRangeMax")),void 0!==t.get("chartRangeMinX")&&(t.get("chartRangeClipX")||t.get("chartRangeMinX")<this.minx)&&(this.minx=t.get("chartRangeMinX")),void 0!==t.get("chartRangeMaxX")&&(t.get("chartRangeClipX")||t.get("chartRangeMaxX")>this.maxx)&&(this.maxx=t.get("chartRangeMaxX"))},drawNormalRange:function(t,e,i,n,r){var a=this.options.get("normalRangeMin"),o=this.options.get("normalRangeMax"),l=e+s.round(i-i*((o-this.miny)/r)),u=s.round(i*(o-a)/r);this.target.drawRect(t,l,n,u,void 0,this.options.get("normalRangeColor")).append()},render:function(){var e,i,n,r,a,o,l,u,c,h,d,f,p,m,g,_,y,w,x,k,C,S,T,M,A,E=this.options,O=this.target,$=this.canvasWidth,D=this.canvasHeight,j=this.vertices,P=E.get("spotRadius"),R=this.regionMap;if(b._super.render.call(this)&&(this.scanValues(),this.processRangeOptions(),T=this.xvalues,M=this.yvalues,this.yminmax.length&&!(this.yvalues.length<2))){for(r=a=0,e=this.maxx-this.minx==0?1:this.maxx-this.minx,i=this.maxy-this.miny==0?1:this.maxy-this.miny,n=this.yvalues.length-1,P&&($<4*P||D<4*P)&&(P=0),P&&(C=E.get("highlightSpotColor")&&!E.get("disableInteraction"),(C||E.get("minSpotColor")||E.get("spotColor")&&M[n]===this.miny)&&(D-=s.ceil(P)),(C||E.get("maxSpotColor")||E.get("spotColor")&&M[n]===this.maxy)&&(D-=s.ceil(P),r+=s.ceil(P)),(C||(E.get("minSpotColor")||E.get("maxSpotColor"))&&(M[0]===this.miny||M[0]===this.maxy))&&(a+=s.ceil(P),$-=s.ceil(P)),(C||E.get("spotColor")||E.get("minSpotColor")||E.get("maxSpotColor")&&(M[n]===this.miny||M[n]===this.maxy))&&($-=s.ceil(P))),D--,void 0===E.get("normalRangeMin")||E.get("drawNormalOnTop")||this.drawNormalRange(a,r,D,$,i),l=[],u=[l],m=g=null,_=M.length,A=0;A<_;A++)c=T[A],d=T[A+1],h=M[A],f=a+s.round((c-this.minx)*($/e)),p=A<_-1?a+s.round((d-this.minx)*($/e)):$,g=f+(p-f)/2,R[A]=[m||0,g,A],m=g,null===h?A&&(null!==M[A-1]&&(l=[],u.push(l)),j.push(null)):(h<this.miny&&(h=this.miny),h>this.maxy&&(h=this.maxy),l.length||l.push([f,r+D]),o=[f,r+s.round(D-D*((h-this.miny)/i))],l.push(o),j.push(o));for(y=[],w=[],x=u.length,A=0;A<x;A++)l=u[A],l.length&&(E.get("fillColor")&&(l.push([l[l.length-1][0],r+D]),w.push(l.slice(0)),l.pop()),l.length>2&&(l[0]=[l[0][0],l[1][1]]),y.push(l));for(x=w.length,A=0;A<x;A++)O.drawShape(w[A],E.get("fillColor"),E.get("fillColor")).append();for(void 0!==E.get("normalRangeMin")&&E.get("drawNormalOnTop")&&this.drawNormalRange(a,r,D,$,i),x=y.length,A=0;A<x;A++)O.drawShape(y[A],E.get("lineColor"),void 0,E.get("lineWidth")).append();if(P&&E.get("valueSpots"))for(k=E.get("valueSpots"),void 0===k.get&&(k=new v(k)),A=0;A<_;A++)(S=k.get(M[A]))&&O.drawCircle(a+s.round((T[A]-this.minx)*($/e)),r+s.round(D-D*((M[A]-this.miny)/i)),P,void 0,S).append();P&&E.get("spotColor")&&null!==M[n]&&O.drawCircle(a+s.round((T[T.length-1]-this.minx)*($/e)),r+s.round(D-D*((M[n]-this.miny)/i)),P,void 0,E.get("spotColor")).append(),this.maxy!==this.minyorg&&(P&&E.get("minSpotColor")&&(c=T[t.inArray(this.minyorg,M)],O.drawCircle(a+s.round((c-this.minx)*($/e)),r+s.round(D-D*((this.minyorg-this.miny)/i)),P,void 0,E.get("minSpotColor")).append()),P&&E.get("maxSpotColor")&&(c=T[t.inArray(this.maxyorg,M)],O.drawCircle(a+s.round((c-this.minx)*($/e)),r+s.round(D-D*((this.maxyorg-this.miny)/i)),P,void 0,E.get("maxSpotColor")).append())),this.lastShapeId=O.getLastShapeId(),this.canvasTop=r,O.render()}}}),t.fn.sparkline.bar=w=i(t.fn.sparkline._base,y,{type:"bar",init:function(e,i,n,a,o){var h,d,f,p,m,g,_,y,b,x,k,C,S,T,M,A,E,O,$,D,j,P,R=parseInt(n.get("barWidth"),10),N=parseInt(n.get("barSpacing"),10),I=n.get("chartRangeMin"),L=n.get("chartRangeMax"),H=n.get("chartRangeClip"),z=1/0,q=-1/0;for(w._super.init.call(this,e,i,n,a,o),g=0,_=i.length;g<_;g++)D=i[g],((h="string"==typeof D&&D.indexOf(":")>-1)||t.isArray(D))&&(M=!0,h&&(D=i[g]=u(D.split(":"))),D=c(D,null),d=s.min.apply(s,D),f=s.max.apply(s,D),d<z&&(z=d),f>q&&(q=f));this.stacked=M,this.regionShapes={},this.barWidth=R,this.barSpacing=N,this.totalBarWidth=R+N,this.width=a=i.length*R+(i.length-1)*N,this.initTarget(),H&&(S=void 0===I?-1/0:I,T=void 0===L?1/0:L),m=[],p=M?[]:m;var F=[],B=[];for(g=0,_=i.length;g<_;g++)if(M)for(A=i[g],i[g]=$=[],F[g]=0,p[g]=B[g]=0,E=0,O=A.length;E<O;E++)null!==(D=$[E]=H?r(A[E],S,T):A[E])&&(D>0&&(F[g]+=D),z<0&&q>0?D<0?B[g]+=s.abs(D):p[g]+=D:p[g]+=s.abs(D-(D<0?q:z)),m.push(D));else D=H?r(i[g],S,T):i[g],null!==(D=i[g]=l(D))&&m.push(D);this.max=C=s.max.apply(s,m),this.min=k=s.min.apply(s,m),this.stackMax=q=M?s.max.apply(s,F):C,this.stackMin=z=M?s.min.apply(s,m):k,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<k)&&(k=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>C)&&(C=n.get("chartRangeMax")),this.zeroAxis=b=n.get("zeroAxis",!0),x=k<=0&&C>=0&&b?0:0==b?k:k>0?k:C,this.xaxisOffset=x,y=M?s.max.apply(s,p)+s.max.apply(s,B):C-k,this.canvasHeightEf=b&&k<0?this.canvasHeight-2:this.canvasHeight-1,k<x?(P=M&&C>=0?q:C,(j=(P-x)/y*this.canvasHeight)!==s.ceil(j)&&(this.canvasHeightEf-=2,j=s.ceil(j))):j=this.canvasHeight,this.yoffset=j,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new v(this.colorMapByValue))),this.range=y},getRegion:function(t,e,i){var n=s.floor(e/this.totalBarWidth);return n<0||n>=this.values.length?void 0:n},getCurrentRegionFields:function(){var t,e,i=this.currentRegion,n=p(this.values[i]),r=[];for(e=n.length;e--;)t=n[e],r.push({isNull:null===t,value:t,color:this.calcColor(e,t,i),offset:i});return r},calcColor:function(e,i,n){var r,a,o=this.colorMapByIndex,s=this.colorMapByValue,l=this.options;return r=this.stacked?l.get("stackedBarColor"):i<0?l.get("negBarColor"):l.get("barColor"),0===i&&void 0!==l.get("zeroColor")&&(r=l.get("zeroColor")),s&&(a=s.get(i))?r=a:o&&o.length>n&&(r=o[n]),t.isArray(r)?r[e%r.length]:r},renderRegion:function(e,i){var n,r,a,o,l,u,c,h,f,p,m=this.values[e],v=this.options,g=this.xaxisOffset,_=[],y=this.range,b=this.stacked,w=this.target,x=e*this.totalBarWidth,k=this.canvasHeightEf,C=this.yoffset;if(m=t.isArray(m)?m:[m],c=m.length,h=m[0],o=d(null,m),p=d(g,m,!0),o)return v.get("nullColor")?(a=i?v.get("nullColor"):this.calcHighlightColor(v.get("nullColor"),v),n=C>0?C-1:C,w.drawRect(x,n,this.barWidth-1,0,a,a)):void 0;for(l=C,u=0;u<c;u++){if(h=m[u],b&&h===g){if(!p||f)continue;f=!0}r=y>0?s.floor(k*(s.abs(h-g)/y))+1:1,h<g||h===g&&0===C?(n=l,l+=r):(n=C-r,C-=r),a=this.calcColor(u,h,e),i&&(a=this.calcHighlightColor(a,v)),_.push(w.drawRect(x,n,this.barWidth-1,r-1,a,a))}return 1===_.length?_[0]:_}}),t.fn.sparkline.tristate=x=i(t.fn.sparkline._base,y,{type:"tristate",init:function(e,i,n,r,a){var o=parseInt(n.get("barWidth"),10),s=parseInt(n.get("barSpacing"),10);x._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.barWidth=o,this.barSpacing=s,this.totalBarWidth=o+s,this.values=t.map(i,Number),this.width=r=i.length*o+(i.length-1)*s,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new v(this.colorMapByValue))),this.initTarget()},getRegion:function(t,e,i){return s.floor(e/this.totalBarWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],color:this.calcColor(this.values[t],t),offset:t}},calcColor:function(t,e){var i,n=this.values,r=this.options,a=this.colorMapByIndex,o=this.colorMapByValue;return o&&(i=o.get(t))?i:a&&a.length>e?a[e]:n[e]<0?r.get("negBarColor"):n[e]>0?r.get("posBarColor"):r.get("zeroBarColor")},renderRegion:function(t,e){var i,n,r,a,o,l,u=this.values,c=this.options,h=this.target;if(i=h.pixelHeight,r=s.round(i/2),a=t*this.totalBarWidth,u[t]<0?(o=r,n=r-1):u[t]>0?(o=0,n=r-1):(o=r-1,n=2),null!==(l=this.calcColor(u[t],t)))return e&&(l=this.calcHighlightColor(l,c)),h.drawRect(a,o,this.barWidth-1,n-1,l,l)}}),t.fn.sparkline.discrete=k=i(t.fn.sparkline._base,y,{type:"discrete",init:function(e,i,n,r,a){k._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.values=i=t.map(i,Number),this.min=s.min.apply(s,i),this.max=s.max.apply(s,i),this.range=this.max-this.min,this.width=r="auto"===n.get("width")?2*i.length:this.width,this.interval=s.floor(r/i.length),this.itemWidth=r/i.length,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<this.min)&&(this.min=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>this.max)&&(this.max=n.get("chartRangeMax")),this.initTarget(),this.target&&(this.lineHeight="auto"===n.get("lineHeight")?s.round(.3*this.canvasHeight):n.get("lineHeight"))},getRegion:function(t,e,i){return s.floor(e/this.itemWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],offset:t}},renderRegion:function(t,e){var i,n,a,o,l=this.values,u=this.options,c=this.min,h=this.max,d=this.range,f=this.interval,p=this.target,m=this.canvasHeight,v=this.lineHeight,g=m-v;return n=r(l[t],c,h),o=t*f,i=s.round(g-g*((n-c)/d)),a=u.get("thresholdColor")&&n<u.get("thresholdValue")?u.get("thresholdColor"):u.get("lineColor"),e&&(a=this.calcHighlightColor(a,u)),p.drawLine(o,i,o,i+v,a)}}),t.fn.sparkline.bullet=C=i(t.fn.sparkline._base,{type:"bullet",init:function(t,e,i,n,r){var a,o,l;C._super.init.call(this,t,e,i,n,r),this.values=e=u(e),l=e.slice(),l[0]=null===l[0]?l[2]:l[0],l[1]=null===e[1]?l[2]:l[1],a=s.min.apply(s,e),o=s.max.apply(s,e),a=void 0===i.get("base")?a<0?a:0:i.get("base"),this.min=a,this.max=o,this.range=o-a,this.shapes={},this.valueShapes={},this.regiondata={},this.width=n="auto"===i.get("width")?"4.0em":n,this.target=this.$el.simpledraw(n,r,i.get("composite")),e.length||(this.disabled=!0),this.initTarget()},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{fieldkey:t.substr(0,1),value:this.values[t.substr(1)],region:t}},changeHighlight:function(t){var e,i=this.currentRegion,n=this.valueShapes[i];switch(delete this.shapes[n],i.substr(0,1)){case"r":e=this.renderRange(i.substr(1),t);break;case"p":e=this.renderPerformance(t);break;case"t":e=this.renderTarget(t)}this.valueShapes[i]=e.id,this.shapes[e.id]=i,this.target.replaceWithShape(n,e)},renderRange:function(t,e){var i=this.values[t],n=s.round(this.canvasWidth*((i-this.min)/this.range)),r=this.options.get("rangeColors")[t-2];return e&&(r=this.calcHighlightColor(r,this.options)),this.target.drawRect(0,0,n-1,this.canvasHeight-1,r,r)},renderPerformance:function(t){var e=this.values[1],i=s.round(this.canvasWidth*((e-this.min)/this.range)),n=this.options.get("performanceColor");return t&&(n=this.calcHighlightColor(n,this.options)),this.target.drawRect(0,s.round(.3*this.canvasHeight),i-1,s.round(.4*this.canvasHeight)-1,n,n)},renderTarget:function(t){var e=this.values[0],i=s.round(this.canvasWidth*((e-this.min)/this.range)-this.options.get("targetWidth")/2),n=s.round(.1*this.canvasHeight),r=this.canvasHeight-2*n,a=this.options.get("targetColor");return t&&(a=this.calcHighlightColor(a,this.options)),this.target.drawRect(i,n,this.options.get("targetWidth")-1,r-1,a,a)},render:function(){var t,e,i=this.values.length,n=this.target;if(C._super.render.call(this)){for(t=2;t<i;t++)e=this.renderRange(t).append(),this.shapes[e.id]="r"+t,this.valueShapes["r"+t]=e.id;null!==this.values[1]&&(e=this.renderPerformance().append(),this.shapes[e.id]="p1",this.valueShapes.p1=e.id),null!==this.values[0]&&(e=this.renderTarget().append(),this.shapes[e.id]="t0",this.valueShapes.t0=e.id),n.render()}}}),t.fn.sparkline.pie=S=i(t.fn.sparkline._base,{type:"pie",init:function(e,i,n,r,a){var o,l=0;if(S._super.init.call(this,e,i,n,r,a),this.shapes={},this.valueShapes={},this.values=i=t.map(i,Number),"auto"===n.get("width")&&(this.width=this.height),i.length>0)for(o=i.length;o--;)l+=i[o];this.total=l,this.initTarget(),this.radius=s.floor(s.min(this.canvasWidth,this.canvasHeight)/2)},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],percent:this.values[t]/this.total*100,color:this.options.get("sliceColors")[t%this.options.get("sliceColors").length],offset:t}},changeHighlight:function(t){var e=this.currentRegion,i=this.renderSlice(e,t),n=this.valueShapes[e];delete this.shapes[n],this.target.replaceWithShape(n,i),this.valueShapes[e]=i.id,this.shapes[i.id]=e},renderSlice:function(t,e){var i,n,r,a,o,l=this.target,u=this.options,c=this.radius,h=u.get("borderWidth"),d=u.get("offset"),f=2*s.PI,p=this.values,m=this.total,v=d?2*s.PI*(d/360):0;for(a=p.length,r=0;r<a;r++){if(i=v,n=v,m>0&&(n=v+f*(p[r]/m)),t===r)return o=u.get("sliceColors")[r%u.get("sliceColors").length],e&&(o=this.calcHighlightColor(o,u)),l.drawPieSlice(c,c,c-h,i,n,void 0,o);v=n}},render:function(){var t,e,i=this.target,n=this.values,r=this.options,a=this.radius,o=r.get("borderWidth");if(S._super.render.call(this)){for(o&&i.drawCircle(a,a,s.floor(a-o/2),r.get("borderColor"),void 0,o).append(),e=n.length;e--;)n[e]&&(t=this.renderSlice(e).append(),this.valueShapes[e]=t.id,this.shapes[t.id]=e);i.render()}}}),t.fn.sparkline.box=T=i(t.fn.sparkline._base,{type:"box",init:function(e,i,n,r,a){T._super.init.call(this,e,i,n,r,a),this.values=t.map(i,Number),this.width="auto"===n.get("width")?"4.0em":r,this.initTarget(),this.values.length||(this.disabled=1)},getRegion:function(){return 1},getCurrentRegionFields:function(){var t=[{field:"lq",value:this.quartiles[0]},{field:"med",value:this.quartiles[1]},{field:"uq",value:this.quartiles[2]}];return void 0!==this.loutlier&&t.push({field:"lo",value:this.loutlier}),void 0!==this.routlier&&t.push({field:"ro",value:this.routlier}),void 0!==this.lwhisker&&t.push({field:"lw",value:this.lwhisker}),void 0!==this.rwhisker&&t.push({field:"rw",value:this.rwhisker}),t},render:function(){var t,e,i,n,r,o,l,u,c,h,d,f=this.target,p=this.values,m=p.length,v=this.options,g=this.canvasWidth,_=this.canvasHeight,y=void 0===v.get("chartRangeMin")?s.min.apply(s,p):v.get("chartRangeMin"),b=void 0===v.get("chartRangeMax")?s.max.apply(s,p):v.get("chartRangeMax"),w=0;if(T._super.render.call(this)){if(v.get("raw"))v.get("showOutliers")&&p.length>5?(e=p[0],t=p[1],n=p[2],r=p[3],o=p[4],l=p[5],u=p[6]):(t=p[0],n=p[1],r=p[2],o=p[3],l=p[4]);else if(p.sort(function(t,e){return t-e}),n=a(p,1),r=a(p,2),o=a(p,3),i=o-n,v.get("showOutliers")){for(t=l=void 0,c=0;c<m;c++)void 0===t&&p[c]>n-i*v.get("outlierIQR")&&(t=p[c]),p[c]<o+i*v.get("outlierIQR")&&(l=p[c]);e=p[0],u=p[m-1]}else t=p[0],l=p[m-1];this.quartiles=[n,r,o],this.lwhisker=t,this.rwhisker=l,this.loutlier=e,this.routlier=u,d=g/(b-y+1),v.get("showOutliers")&&(w=s.ceil(v.get("spotRadius")),g-=2*s.ceil(v.get("spotRadius")),d=g/(b-y+1),e<t&&f.drawCircle((e-y)*d+w,_/2,v.get("spotRadius"),v.get("outlierLineColor"),v.get("outlierFillColor")).append(),u>l&&f.drawCircle((u-y)*d+w,_/2,v.get("spotRadius"),v.get("outlierLineColor"),v.get("outlierFillColor")).append()),f.drawRect(s.round((n-y)*d+w),s.round(.1*_),s.round((o-n)*d),s.round(.8*_),v.get("boxLineColor"),v.get("boxFillColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/2),s.round((n-y)*d+w),s.round(_/2),v.get("lineColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/4),s.round((t-y)*d+w),s.round(_-_/4),v.get("whiskerColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/2),s.round((o-y)*d+w),s.round(_/2),v.get("lineColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/4),s.round((l-y)*d+w),s.round(_-_/4),v.get("whiskerColor")).append(),f.drawLine(s.round((r-y)*d+w),s.round(.1*_),s.round((r-y)*d+w),s.round(.9*_),v.get("medianColor")).append(),v.get("target")&&(h=s.ceil(v.get("spotRadius")),f.drawLine(s.round((v.get("target")-y)*d+w),s.round(_/2-h),s.round((v.get("target")-y)*d+w),s.round(_/2+h),v.get("targetColor")).append(),f.drawLine(s.round((v.get("target")-y)*d+w-h),s.round(_/2),s.round((v.get("target")-y)*d+w+h),s.round(_/2),v.get("targetColor")).append()),f.render()}}}),E=i({init:function(t,e,i,n){this.target=t,this.id=e,this.type=i,this.args=n},append:function(){return this.target.appendShape(this),this}}),O=i({_pxregex:/(\d+)(px)?\s*$/i,init:function(e,i,n){e&&(this.width=e,this.height=i,this.target=n,this.lastShapeId=null,n[0]&&(n=n[0]),t.data(n,"_jqs_vcanvas",this))},drawLine:function(t,e,i,n,r,a){return this.drawShape([[t,e],[i,n]],r,a)},drawShape:function(t,e,i,n){return this._genShape("Shape",[t,e,i,n])},drawCircle:function(t,e,i,n,r,a){return this._genShape("Circle",[t,e,i,n,r,a])},drawPieSlice:function(t,e,i,n,r,a,o){return this._genShape("PieSlice",[t,e,i,n,r,a,o])},drawRect:function(t,e,i,n,r,a){return this._genShape("Rect",[t,e,i,n,r,a])},getElement:function(){return this.canvas},getLastShapeId:function(){return this.lastShapeId},reset:function(){alert("reset not implemented")},_insert:function(e,i){t(i).html(e)},_calculatePixelDims:function(e,i,n){var r;r=this._pxregex.exec(i),this.pixelHeight=r?r[1]:t(n).height(),r=this._pxregex.exec(e),this.pixelWidth=r?r[1]:t(n).width()},_genShape:function(t,e){var i=R++;return e.unshift(i),new 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workflows":!1,"Analysis home view":!1,"History Lists":!1,"Histories Shared with Me":!1,"Current History":!1,"Create New":!1,"Copy History":!1,"Share or Publish":!1,"Show Structure":!1,"Extract Workflow":!1,"Delete Permanently":!1,"Dataset Actions":!1,"Copy Datasets":!1,"Dataset Security":!1,"Resume Paused Jobs":!1,"Collapse Expanded Datasets":!1,"Unhide Hidden Datasets":!1,"Delete Hidden Datasets":!1,"Purge Deleted Datasets":!1,Downloads:!1,"Export Tool Citations":!1,"Export History to File":!1,"Other Actions":!1,"Import from File":!1,Webhooks:!1,"This history is empty":!1,"No matching datasets found":!1,"An error occurred while getting updates from the server":!1,"Please contact a Galaxy administrator if the problem persists":!1,"search datasets":!1,"You are currently viewing a deleted history!":!1,"You are over your disk quota":!1,"Tool execution is on hold until your disk usage drops below your allocated quota":!1,All:!1,None:!1,"For all selected":!1,"Edit history tags":!1,"Edit history Annotation":!1,"Click to rename history":!1,"Operations on multiple datasets":!1,"Hide datasets":!1,"Unhide datasets":!1,"Delete datasets":!1,"Undelete datasets":!1,"Permanently delete datasets":!1,"This will permanently remove the data in your datasets. Are you sure?":!1,Dataset:!1,Annotation:!1,"This history is empty. Click 'Get Data' on the left tool menu to start":!1,"You must be logged in to create histories":!1,"Unable to purge dataset":!1,"Cannot display datasets removed from disk":!1,"This dataset must finish uploading before it can be viewed":!1,"This dataset is not yet viewable":!1,"View data":!1,Download:!1,"Download dataset":!1,"Additional files":!1,"View details":!1,"This is a new dataset and not all of its data are available yet":!1,"You do not have permission to view this dataset":!1,"The job creating this dataset was cancelled before completion":!1,"This job is waiting to run":!1,"This dataset is currently uploading":!1,"Metadata is being auto-detected":!1,"This job is currently running":!1,'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':!1,"An error occurred with this dataset":!1,"No data":!1,"An error occurred setting the metadata for this dataset":!1,"There was an error getting the data for this dataset":!1,"This dataset has been deleted and removed from disk":!1,"This dataset has been deleted":!1,"This dataset has been hidden":!1,format:!1,database:!1,"Edit attributes":!1,"Cannot edit attributes of datasets removed from disk":!1,"Undelete dataset to edit attributes":!1,"This dataset must finish uploading before it can be edited":!1,"This dataset is not yet editable":!1,Delete:!1,"Dataset is already deleted":!1,"View or report this error":!1,"Run this job again":!1,Visualize:!1,"Visualize in":!1,"Undelete it":!1,"Permanently remove it from disk":!1,"Unhide it":!1,"You may be able to":!1,"set it manually or retry auto-detection":!1,"Edit dataset tags":!1,"Edit dataset annotation":!1,"Tool Help":!1,"Reset passwords":!1,"Search Tool Shed":!1,"Monitor 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new format":!1,Save:!1,Permissions:!1,Datatypes:!1,Convert:!1,Attributes:!1,"Import into History":!1,"Location Details":!1,"Deleting selected items":!1,"Please select folders or files":!1,"Please enter paths to import":!1,"Adding datasets from your history":!1,"Create New Folder":!1,"Create New Library":!1,Tours:!1,"Click here to sign out of all sessions.":!1,"Add or remove custom builds using history datasets.":!1,"Associate OpenIDs with your account.":!1,"Customize your Toolbox by displaying or omitting sets of Tools.":!1,"Access your current API key or create a new one.":!1,"Enable or disable the communication feature to chat with other users.":!1,"Allows you to change your login credentials.":!1,"User Preferences":!1,"Sign out":!1,"Manage custom builds":!1,"Manage OpenIDs":!1,"Manage Toolbox filters":!1,"Manage API key":!1,"Set dataset permissions for new histories":!1,"Change communication settings":!1,"Change password":!1,"Manage information":!1,"Configured Galaxy Tool Sheds":!1,"Repository Installation Queue":!1,"Repository Status":!1,"Workflows Missing Tools":!1,"See in Tool Shed":!1,Requirements:!1,Share:!1,"Workflow submission failed":!1,"Run workflow":!1,"Job submission failed":!1,Execute:!1,"Tool request failed":!1,"Copy and insert individual steps":!1,Warning:!1,"An email notification will be sent when the job has completed.":!1,"Add a step label.":!1,"Assign columns":!1,"Delete this repeat block":!1,placeholder:!1,Repeat:!1,"Browse GenomeSpace":!1,Browse:!1,Error:!1,Close:!1,"Download from web or upload from disk":!1,Collection:!1,Composite:!1,Regular:!1,"Upload configuration":!1,"FTP files":!1,Reset:!1,Pause:!1,Start:!1,"Choose FTP file":!1,"Choose local file":!1,Build:!1,"Choose FTP files":!1,"Choose local files":!1,Select:!1,"Create a collection of paired datasets":!1,"View all histories":!1,"History options":!1,"Refresh history":!1,"View error logs":!1,"View migration stages":!1,"View lineage":!1,"Manage dependencies":!1,"Manage 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the data source.":!1,"Next in History":!1,"Previous in History":!1,"Chat online":!1,"Multiple collections":!1,"Dataset collections":!1,"Dataset collection":!1,"Multiple datasets":!1,"Single dataset":!1,"Download from URL or upload files from disk":!1,"tool tooltip":!1},__ja:{"Analyze Data":"データ解析",Workflow:"ワークフロー","Shared Data":"共有データ","Data Libraries":"データライブラリ",Histories:"ヒストリー",Workflows:"ワークフロー",Visualizations:"可視化",Pages:"ページ",Visualization:"可視化","New Track Browser":"新しい Track Browser","Saved Visualizations":"保存された可視化","Interactive Environments":"インタラクティブ環境",Admin:"管理者",Help:"ヘルプ",Support:"サポート",Search:"検索","Mailing Lists":"メーリングリスト",Videos:"動画","How to Cite Galaxy":"Galaxy を引用する方法","Interactive Tours":"インタラクティブツアー",User:"ユーザー",Login:"ログイン",Register:"登録","Login or Register":"ログイン/登録",Preferences:"設定","Custom Builds":"カスタムビルド",Logout:"ログアウト","Saved Histories":"保存されたヒストリ","Saved Datasets":"保存されたデータセット","Saved Pages":"保存されたページ","Account and saved data":"アカウントと保存されたデータ","Account registration or login":"アカウントの登録またはログイン","Support, contact, and community":"サポート、コンタクト、コミュニティ","Administer this Galaxy":"この Galaxy の管理者","Visualize datasets":"データセットの可視化","Access published resources":"パブリッシュされたリソースへアクセス","Chain tools into workflows":"ツールとワークフローの連携","Analysis home view":"解析ホーム","History Lists":"ヒストリーリスト","Histories Shared with Me":"私と共有されているヒストリー","Current History":"現在のヒストリー","Create New":"新しく作成","Copy History":"ヒストリーをコピーする","Share or Publish":"共有またはパブリッシュ","Show Structure":"構造を見る","Extract Workflow":"ワークフローを抽出","Delete Permanently":"永久に削除","Dataset Actions":"データセットの操作","Copy Datasets":"データセットをコピー","Dataset Security":"データセットのセキュリティ","Resume Paused Jobs":"一時停止したジョブの再開","Collapse Expanded Datasets":"展開されたデータセットを畳む","Unhide Hidden Datasets":"隠されたデータセットを表示する","Delete Hidden Datasets":"隠されたデータセットを削除する","Purge Deleted Datasets":"削除されたデータセットを永久に削除",Downloads:"ダウンロード","Export Tool Citations":"ツールの引用をエクスポート","Export History to File":"ヒストリーをファイルへエクスポート","Other Actions":"その他のアクション","Import from File":"ファイルからの読み込み",Webhooks:"Webhooks","This history is empty":"ヒストリーは空です","No matching datasets found":"一致するデータセットが見つかりませんでした","Search datasets":"データセットを検索する","You are currently viewing a deleted history!":"消去したヒストリーをみています。","You are over your disk quota":"あなたはディスククォータを超えている",All:"一式",None:"なし","For all selected":"各項目を","Edit history tags":"ヒストリーのタグを編集","Edit history annotation":"ヒストリーのアノテーションを編集","Click to rename history":"ヒストリーの名前を変更するにはクリック","Operations on multiple datasets":"複数のデータセットに対する操作","Permanently delete datasets":"永久にデータセットを削除","This will permanently remove the data in your datasets. Are you sure?":"これは永久にあなたのデータセット内のデータを削除します。本当に？",Dataset:"データセット","This history is empty. Click 'Get Data' on the left tool menu to start":"ヒストリーは空です。解析をはじめるには、左パネルの 'データ取得' をクリック","You must be logged in to create histories":"ヒストリーを作成するためにはログインする必要があります","View data":"データを表示",Download:"ダウンロード","Download dataset":"データセットをダウンロード","View details":"細部を表示","This job is waiting to run":"ジョブは実行待ちです","This job is currently running":"ジョブは実行中です","An error occurred with this dataset":"このジョブの実行中に発生したエラー","No data":"データ無し","This dataset has been deleted and removed from disk":"このデータセットは、永続的にディスクから削除されました","This dataset has been deleted":"このデータセットは削除されました","This dataset has been hidden":"このデータセットは、非表示にされた",format:"フォーマット",database:"データベース","Edit attributes":"変数を編集する",Delete:"削除する","View or report this error":"このエラーを届け出る","Run this job again":"もう一度このジョブを実行する",Visualize:"可視化する","Undelete it":"復元する","Permanently remove it from disk":"永久にディスクから削除","Unhide it":"非表示解除する","Search Tool Shed":"Tool Shed で探す","Search Tool Shed (Beta)":"Tool Shed (Beta) で探す","Monitor installing repositories":"インストールレポジトリのモニタ","Manage installed tools":"インストールしたツールの管理","Reset metadata":"メタデータのリセット","Download local tool":"ローカルツールのダウンロード","Tool lineage":"ツール系統","Reload a tool's configuration":"ツールのコンフィグのリロード","Review tool migration stages":"ツール移行ステージのレビュー","View Tool Error Logs":"ツールのエラーログ","Manage Display Whitelist":"表示ホワイトリストの管理","Manage Tool Dependencies":"ツール依存関係の管理",Users:"ユーザー",Groups:"グループ","API keys":"API キー","Impersonate a user":"ユーザー偽装",Data:"データ",Quotas:"クォータ",Roles:"ロール","Local data":"ローカルデータ","Form definitions":"フォーム定義",Administration:"管理",Server:"サーバー","Tools and Tool Shed":"ツールと Tool Shed","User Management":"ユーザ管理","Form Definitions":"フォーム定義","Your workflows":"あなたのワークフロー"},__fr:{"Analyze Data":"Analyse de données",Workflow:"Workflow","Shared Data":"Données partagées","Data Libraries":"Bibliothèque de données",Histories:!1,Workflows:!1,Visualizations:"Visualisations",Pages:"Pages",Visualization:!1,"New Track Browser":"Nouveau Navigateur de Tracks/Pistes","Saved Visualizations":"Visualisations sauvegardées","Interactive Environments":"Environnements interactifs",Admin:"Admin",Help:"Aide",Support:"Assistance",Search:!1,"Mailing Lists":"Liste de diffusion",Videos:"Vidéos",Wiki:"Documentations","How to Cite Galaxy":"Comment citer Galaxy","Interactive Tours":"Guides interactifs",User:"Utilisateur",Login:"Authentification",Register:"Enregistrement","Login or Register":"Authentification et Enregistrement","Logged in as":"Authentifié en tant que",Preferences:"Préférences","Custom Builds":"Mes génomes Builds de référence",Logout:"Déconnexion","Saved Histories":"Historiques sauvegardés","Saved Datasets":"Jeux de données sauvegardés","Saved Pages":"Pages sauvegardées","Account and saved data":"Compte et données sauvegardées","Account registration or login":"Enregistrement ou authentification","Support, contact, and community":"Support,contact et communauté","Administer this Galaxy":"Outils Admin","Visualize datasets":"Visualiser les jeux de données","Access published resources":"Accéder aux données partagées","Chain tools into workflows":"Relier outils dans un workflow","Analysis home view":"Accueil analyse de données","History Lists":"Tableaux des historiques","Histories Shared with Me":"Historiques partagés avec moi","Current History":"Cet Historique","Create New":"Créer un nouveau","Copy History":"Copier l'Historique","Share or Publish":"Partager et publier","Show Structure":"Montrer la structure","Extract Workflow":"Extraire un Workflow","Delete Permanently":"Supprimer définitivement","Dataset Actions":"Actions sur les jeux de données","Copy Datasets":"Copier des jeux de données","Dataset Security":"Permissions/Sécurité","Resume Paused Jobs":"Reprendre les processus en pause","Collapse Expanded Datasets":"Réduire les données étendues","Unhide Hidden Datasets":"Afficher les données cachées","Delete Hidden Datasets":"Supprimer les données cachées","Purge Deleted Datasets":"Purger les données supprimées",Downloads:"Télécharger","Export Tool Citations":"Exporter les citations des outils","Export History to File":"Exporter l'Historique dans un fichier","Other Actions":"Autres actions","Import from File":"Importer depuis un fichier",Webhooks:"Webhooks","This history is empty":"Cet historique est vide","No matching datasets found":"Aucunes données correspondantes n'ont été trouvées","An error occurred while getting updates from the server":"Une erreur s'est produite lors de la réception des données depuis le serveur","Please contact a Galaxy administrator if the problem persists":"Veuillez contacter un administrateur de l'instance Galaxy si ce problème persiste","search datasets":"Rechercher des données","You are currently viewing a deleted history!":"Vous consultez actuellement un historique supprimé!","You are over your disk quota":"Vous avez dépassé votre quota d'espace disque","Tool execution is on hold until your disk usage drops below your allocated quota":"L'exécution de l'outil est en attente tant que votre utilisation d'espace disque dépasse le quota attribué",All:"Tout",None:"Aucun","For all selected":"Pour toute la sélection","Edit history tags":"Editer les mots-clés de l'historique","Edit history Annotation":"Editer l'annotation de l'historique","Click to rename history":"Cliquer pour renommer l'historique","Operations on multiple datasets":"Opérer sur plusieurs jeux de données en même temps","Hide datasets":"Cacher les jeux de données","Unhide datasets":"Afficher les jeux de données cachés","Delete datasets":"Supprimer les jeux de données","Undelete datasets":"Restaurer les jeux de données supprimés","Permanently delete datasets":"Supprimer définitivement les jeux de données","This will permanently remove the data in your datasets. Are you sure?":"Cela supprimera de manière permanente les données de votre historique. Êtes-vous certain?",Dataset:"Jeu de données",Annotation:"Annotation","This history is empty. Click 'Get Data' on the left tool menu to start":"Cet historique est vide. Cliquer sur 'Get Data' au niveau du menu d'outils à gauche pour démarrer","You must be logged in to create histories":"Vous devez être connecté pour créer un historique","load your own data":"Charger vos propres données","get data from an external source":"Charger des données depuis une source externe","Include Deleted Datasets":"Inclure les jeux de données supprimés","Include Hidden Datasets":"Inclure les jeux de données cachés","Unable to purge dataset":"Impossible de purger le jeu de données","Cannot display datasets removed from disk":"Impossible de visualiser les jeux de données supprimés du disque","This dataset must finish uploading before it can be viewed":"Le jeu de données doit être totalement téléversé avant de pouvoir être visualiser","This dataset is not yet viewable":"Ce jeu de données n'est pas visualisable","View data":"Voir les données",Download:!1,"Download dataset":"Télécharger le jeu de données","Additional files":"Fichiers additionnels","View details":"Voir les détails","This is a new dataset and not all of its data are available yet":"Il s'agit d'un nouveau jeu de données et seule une partie des données est accessible pour le moment","You do not have permission to view this dataset":"Vous n'avez pas la permission de voir ce jeu de données","The job creating this dataset was cancelled before completion":"Le processus à l'origine de ce jeu de données a été annulé prématurément","This job is waiting to run":"Ce calcul est en attente de traitement","This dataset is currently uploading":"Ce jeu de données est en cours de téléversement","Metadata is being auto-detected":"Les métadonnées sont auto-détectées","This job is currently running":"Le traitement est en cours",'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':'Ce traitement est en pause. Utilisez le "Relancer les traitements en pause" dans le menu d\'historique pour le relancer',"An error occurred with this dataset":"Une erreur est survenue avec ce jeu de données","No data":"Aucune donnée","An error occurred setting the metadata for this dataset":"Une erreur est survenue pendant la récupération des métadonnées de ce jeu de données","There was an error getting the data for this dataset":"Il est survenu une erreur durant la récupération du contenu de ce jeu de données","This dataset has been deleted and removed from disk":"Ce jeu de données a été supprimé et effacé du disque","This dataset has been deleted":"Ce jeu de données a été supprimé","This dataset has been hidden":"Ce jeu de données a été caché",format:"format",database:"génome de référence","Edit attributes":"Editer les attributs","Cannot edit attributes of datasets removed from disk":"Impossible d'éditer les attributs de jeux de données effacés du disque","Undelete dataset to edit attributes":"Restaurer le jeu de données pour en éditer les attributs","This dataset must finish uploading before it can be edited":"Ce jeu de données doit être entièrement téléversé avant toute modification","This dataset is not yet editable":"Ce jeu de données n'est pas encore éditable",Delete:"Supprimer","Dataset is already deleted":"Le jeu de données est déjà supprimé","View or report this error":"Voir ou remonter cette erreur","Run this job again":"Exécuter ce traitement à nouveau",Visualize:!1,"Visualize in":"Visualiser via","Undelete it":"Restaurer","Permanently remove it from disk":"Supprimer définitivement du disque","Unhide it":"Rendre visible","You may be able to":"Vous devriez être en mesure de","set it manually or retry auto-detection":"Traitez le manuellement ou retenter la détection automatique","Edit dataset tags":"Editer les mots-clés du jeu de données","Edit dataset annotation":"Editer les annotations du jeu de données","Tool Help":!1,"Reset passwords":!1,"Search Tool Shed":!1,"Monitor installing repositories":!1,"Manage installed tools":!1,"Reset metadata":!1,"Download local tool":!1,"Tool lineage":!1,"Reload a tool's configuration":!1,"Review tool migration stages":!1,"View Tool Error Logs":!1,"Manage Display Whitelist":!1,"Manage Tool Dependencies":!1,Users:!1,Groups:!1,"API keys":!1,"Impersonate a user":!1,Data:!1,Quotas:!1,Roles:!1,"Local data":!1,"Form Definitions":!1,"Enable/Disable Scratchbook":!1,"Show/Hide Scratchbook":!1,Tags:"Mots-clés","Edit annotation":"Editer les annotations",Subscript:!1,Superscript:!1,Trackster:!1,"Any additional comments you can provide regarding what you were doing at the time of the bug.":!1,"Your email address":!1,Report:!1,"Error Report":!1,"Dataset details":!1,"Save permissions.":!1,"Change the datatype to a new type.":!1,"Convert the datatype to a new format.":!1,"Save attributes of the dataset.":!1,"Change data type":!1,"Edit dataset attributes":!1,"Save permissions":!1,"Manage dataset permissions":!1,"Change datatype":!1,"Convert 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t.insert&&(e+=t.insert),e+=this.grid_filters(t),e+="</div>"},header:function(t){var e="<tr>";t.show_item_checkboxes&&(e+="<th>",t.items.length>0&&(e+='<input type="checkbox" id="check_all" name=select_all_checkbox value="true"><input type="hidden" name=select_all_checkbox value="true">'),e+="</th>");for(var i in t.columns){var n=t.columns[i];n.visible&&(e+='<th id="'+n.key+'-header">',n.href?e+='<a href="'+n.href+'" class="sort-link" sort_key="'+n.key+'">'+n.label+"</a>":e+=n.label,e+='<span class="sort-arrow">'+n.extra+"</span></th>")}return e+="</tr>"},body:function(e){var i="",n=0;0==e.items.length&&(i+='<tr><td colspan="100"><em>No Items</em></td></tr>',n=1);for(var r in e.items){var a=e.items[r],o=a.encode_id;i+="<tr ",e.current_item_id==a.id&&(i+='class="current"'),i+=">",e.show_item_checkboxes&&(i+='<td style="width: 1.5em;"><input type="checkbox" name="id" value="'+o+'" id="'+o+'" class="grid-row-select-checkbox" /></td>');for(var s in e.columns){var l=e.columns[s];if(l.visible){var u="";l.nowrap&&(u='style="white-space:nowrap;"');var c=a.column_config[l.label],h=c.link,d=c.value,f=c.target;"string"===t.type(d)&&(d=d.replace(/\/\//g,"/"));var p="",m="";l.attach_popup&&(p="grid-"+r+"-popup",m="menubutton",""!=h&&(m+=" split"),m+=" popup"),i+="<td "+u+">",h?(0!=e.operations.length&&(i+='<div id="'+p+'" class="'+m+'" style="float: left;">'),i+='<a class="menubutton-label use-target" target="'+f+'" href="'+h+'" onclick="return false;">'+d+"</a>",0!=e.operations.length&&(i+="</div>")):i+='<div id="'+p+'" class="'+m+'"><label id="'+l.label_id_prefix+o+'" for="'+o+'">'+(d||"")+"</label></div>",i+="</td>"}}i+="</tr>",n++}return i},footer:function(t){var e="";if(t.use_paging&&t.num_pages>1){var i=t.num_page_links,n=t.cur_page_num,r=t.num_pages,a=i/2,o=n-a,s=0;o<=0&&(o=1,s=a-(n-o));var l,u=a+s,c=n+u;c<=r?l=0:(c=r,l=u-(c+1-n)),0!=l&&(o-=l)<1&&(o=1),e+='<tr id="page-links-row">',t.show_item_checkboxes&&(e+="<td></td>"),e+='<td 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f=t.operations[d];f.allow_multiple&&(e+='<input type="button" value="'+f.label+'" class="operation-button action-button">&nbsp;')}e+="</td></tr>"}var p=!1;for(d in t.operations)if(t.operations[d].global_operation){p=!0;break}if(p){e+='<tr><td colspan="100">';for(d in t.operations){var f=t.operations[d];f.global_operation&&(e+='<a class="action-button" href="'+f.global_operation+'">'+f.label+"</a>")}e+="</td></tr>"}return t.legend&&(e+='<tr><td colspan="100">'+t.legend+"</td></tr>"),e},message:function(t){var e=t.status;return-1!=["success","ok"].indexOf(e)&&(e="done"),'<p><div class="'+e+'message transient-message">'+n.escape(t.message)+'</div><div style="clear: both"></div></p>'},grid_filters:function(t){var e=t.default_filter_dict,i=t.filters,n="none";t.advanced_search&&(n="block");var r=!1;for(var a in t.columns){var o=t.columns[a];if("advanced"==o.filterable){var s=o.key,l=i[s],u=e[s];l&&u&&l!=u&&(n="block"),r=!0}}var c="block";"block"==n&&(c="none");var h='<div id="standard-search" style="display: '+c+';"><table><tr><td style="padding: 0;"><table>';for(var a in t.columns){var o=t.columns[a];"standard"==o.filterable&&(h+=this.grid_column_filter(t,o))}h+="</table></td></tr><tr><td>",r&&(h+='<a href="" class="advanced-search-toggle">Advanced Search</a>'),h+="</td></tr></table></div>",h+='<div id="advanced-search" style="display: '+n+'; margin-top: 5px; border: 1px solid #ccc;"><table><tr><td style="text-align: left" colspan="100"><a href="" class="advanced-search-toggle">Close Advanced Search</a></td></tr>';for(var a in t.columns){var o=t.columns[a];"advanced"==o.filterable&&(h+=this.grid_column_filter(t,o))}return h+="</table></div>"},grid_column_filter:function(e,i){var n=(e.default_filter_dict,e.filters),r=i.label,a=i.key;"advanced"==i.filterable&&(r=r.toLowerCase());var o="<tr>";if("advanced"==i.filterable&&(o+='<td align="left" style="padding-left: 10px">'+r+":</td>"),o+='<td style="padding-bottom: 1px;">',i.is_text){o+='<form class="text-filter-form" column_key="'+a+'" action="'+e.url+'" method="get" >';for(h in e.columns){var s=e.columns[h],l=n[s.key];l&&"All"!=l&&(s.is_text&&(l=JSON.stringify(l)),o+='<input type="hidden" id="'+s.key+'" name="f-'+s.key+'" value="'+l+'"/>')}o+='<span id="'+a+'-filtering-criteria">';var u=n[a];if(u){var c=t.type(u);if("string"==c&&"All"!=u&&(o+=this.filter_element(a,u)),"array"==c)for(var h in u){var d=u[h],f=u;f=f.slice(h),o+=this.filter_element(a,d)}}o+="</span>";var p="";if("standard"==i.filterable){p=i.label.toLowerCase();var m=p.length;m<20&&(m=20),m+=4}o+='<span class="search-box"><input class="search-box-input" id="input-'+a+'-filter" name="f-'+a+'" type="text" placeholder="'+p+'" size="'+m+'"/><button type="submit" style="background: transparent; border: none; padding: 4px; margin: 0px;"><i class="fa fa-search"></i></button></span></form>'}else{o+='<span id="'+a+'-filtering-criteria">';var v=!1;for(var g in e.categorical_filters[a]){var _=e.categorical_filters[a][g],y="",b="";for(var w in _)y=w,b=_[w];v&&(o+=" | "),v=!0;var d=n[a];d&&_[a]&&d==b?o+='<span class="categorical-filter '+a+'-filter current-filter">'+g+"</span>":o+='<span class="categorical-filter '+a+'-filter"><a href="javascript:void(0);" filter_key="'+y+'" filter_val="'+b+'">'+g+"</a></span>"}o+="</span>"}return o+="</td></tr>"},filter_element:function(t,e){return'<span class="text-filter-val">'+(e=a.default.sanitize(e))+'<a href="javascript:void(0);" filter_key="'+t+'" filter_val="'+e+'"><i class="fa fa-times" style="padding-left: 5px; padding-bottom: 6px;"/></a></span>'}}}).call(e,i(0),i(1))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(4),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=t.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new 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s=o.step;s||(s=o.precise&&this.has_slider?(o.max-o.min)/o.split:1),this.has_slider?(this.$text.addClass("ui-form-slider-left"),this.$slider.slider({min:o.min,max:o.max,step:s}).on("slide",function(t,e){i.value(e.value)})):this.$slider.hide(),this.listenTo(this.model,"change",this.render,this),this.render()},render:function(){var t=this.model.get("value");this.has_slider&&this.$slider.slider("value",t),t!==this.$text.val()&&this.$text.val(t)},value:function(t){var e=this.model.attributes;return void 0!==t&&(null===t||""===t||this._isParameter(t)||(isNaN(t)&&(t=0),!e.precise&&(t=Math.round(t)),null!==e.max&&(t=Math.min(t,e.max)),null!==e.min&&(t=Math.max(t,e.min))),this.model.set("value",t),this.model.trigger("change"),e.onchange(t)),this.model.get("value")},_isParameter:function(t){return this.model.get("is_workflow")&&"$"===String(t).substring(0,1)},_template:function(){return'<div class="ui-form-slider"><input class="ui-form-slider-text" type="text"/><div 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this dataset is not installed. Please check your datatypes_conf.xml file.",N=["Histogram","Line","Filled","Intensity"],I=function t(e,i,n){if(t.id_counter||(t.id_counter=0),this.id=t.id_counter++,this.view=e,this.container=i,this.drag_handle_class=n.drag_handle_class,this.is_overview=!1,this.action_icons={},this.config=A.default.ConfigSettingCollection.from_models_and_saved_values(this.config_params,n.prefs),this.config.get_value("name")||this.config.set_value("name",n.name),this.config_onchange&&this.config.on("change",this.config_onchange,this),this.container_div=this.build_container_div(),this.header_div=null,!1!==n.header){var r=new p.default.TrackHeaderView({model:this,id:this.id});this.header_div=r.$el,this.container_div.append(this.header_div);var a=r.icons_div;this.action_icons=r.action_icons,this.container_div.hover(function(){a.show()},function(){a.hide()})}};I.prototype.action_icons_def=[{name:"toggle_icon",title:"Hide/show content",css_class:"toggle",on_click_fn:function(t){t.config.get_value("content_visible")?(t.action_icons.toggle_icon.addClass("toggle-expand").removeClass("toggle"),t.hide_contents(),t.config.set_value("content_visible",!1)):(t.action_icons.toggle_icon.addClass("toggle").removeClass("toggle-expand"),t.config.set_value("content_visible",!0),t.show_contents())}},{name:"settings_icon",title:(0,l.default)("Edit settings"),css_class:"gear",on_click_fn:function(t){new A.default.ConfigSettingCollectionView({collection:t.config}).render_in_modal("Configure Track")}},{name:"remove_icon",title:(0,l.default)("Remove"),css_class:"remove-icon",on_click_fn:function(e){t(".tooltip").remove(),e.remove()}}],$(I.prototype,{config_params:[{key:"name",label:"Name",type:"text",default_value:""},{key:"content_visible",type:"bool",default_value:!0,hidden:!0}],config_onchange:function(){},init:function(){},changed:function(){this.view.changed()},can_draw:function(){return!(!this.enabled||!this.config.get_value("content_visible"))},request_draw:function(){},_draw:function(t){},to_dict:function(){},set_name:function(t){this.old_name=this.config.get_value("name"),this.config.set_value("name",t)},revert_name:function(){this.old_name&&this.config.set_value("name",this.old_name)},remove:function(){this.changed(),this.container.remove_drawable(this);var e=this.view;this.container_div.hide(0,function(){t(this).remove(),e.update_intro_div()})},build_container_div:function(){},update_icons:function(){},hide_contents:function(){},show_contents:function(){},get_drawables:function(){}});var L=function(t,e,i){I.call(this,t,e,i),this.obj_type=i.obj_type,this.drawables=[]};$(L.prototype,I.prototype,{unpack_drawables:function(t){this.drawables=[];for(var e,i=0;i<t.length;i++)e=at(t[i],this.view,this),this.add_drawable(e)},init:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].init()},_draw:function(t){for(var e=0;e<this.drawables.length;e++)this.drawables[e]._draw(t)},to_dict:function(){for(var t=[],e=0;e<this.drawables.length;e++)t.push(this.drawables[e].to_dict());return{prefs:this.config.to_key_value_dict(),obj_type:this.obj_type,drawables:t}},add_drawable:function(t){this.drawables.push(t),t.container=this,this.changed()},add_drawable_before:function(t,e){this.changed();var i=this.drawables.indexOf(e);return-1!==i&&(this.drawables.splice(i,0,t),!0)},replace_drawable:function(t,e,i){var n=this.drawables.indexOf(t);return-1!==n&&(this.drawables[n]=e,i&&t.container_div.replaceWith(e.container_div),this.changed()),n},remove_drawable:function(t){var e=this.drawables.indexOf(t);return-1!==e&&(this.drawables.splice(e,1),t.container=null,this.changed(),!0)},move_drawable:function(t,e){var i=this.drawables.indexOf(t);return-1!==i&&(this.drawables.splice(i,1),this.drawables.splice(e,0,t),this.changed(),!0)},get_drawables:function(){return this.drawables},get_tracks:function(t){for(var e,i=this.drawables.slice(0),n=[];0!==i.length;)e=i.shift(),e instanceof t?n.push(e):e.drawables&&(i=i.concat(e.drawables));return n}});var H=function(e,i,n){if($(n,{obj_type:"DrawableGroup",drag_handle_class:"group-handle"}),L.call(this,e,i,n),this.content_div=t("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div),j(this.container_div,this),j(this.content_div,this),P(this.container_div,this.drag_handle_class,".group",this),this.filters_manager=new x.default.FiltersManager(this),this.header_div.after(this.filters_manager.parent_div),this.filters_manager.parent_div.after(t("<div style='clear: both'/>")),this.saved_filters_managers=[],"drawables"in n&&this.unpack_drawables(n.drawables),"filters"in n){var r=this.filters_manager;this.filters_manager=new x.default.FiltersManager(this,n.filters),r.parent_div.replaceWith(this.filters_manager.parent_div),n.filters.visible&&this.setup_multitrack_filtering()}};$(H.prototype,I.prototype,L.prototype,{action_icons_def:[I.prototype.action_icons_def[0],I.prototype.action_icons_def[1],{name:"composite_icon",title:(0,l.default)("Show composite track"),css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_composite_track()}},{name:"filters_icon",title:(0,l.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?(t.filters_manager.clear_filters(),t._restore_filter_managers()):(t.setup_multitrack_filtering(),t.request_draw({clear_tile_cache:!0})),t.filters_manager.toggle()}},I.prototype.action_icons_def[2]],build_container_div:function(){var e=t("<div/>").addClass("group").attr("id","group_"+this.id);return this.container&&this.container.content_div.append(e),e},hide_contents:function(){this.tiles_div.hide()},show_contents:function(){this.tiles_div.show(),this.request_draw()},update_icons:function(){var e=this.drawables.length;if(0===e)this.action_icons.composite_icon.hide(),this.action_icons.filters_icon.hide();else if(1===e)this.action_icons.composite_icon.toggle(this.drawables[0]instanceof K),this.action_icons.filters_icon.hide();else{var i,n,r,a=this.drawables[0].get_type(),o=0;for(i=0;i<e;i++){if(r=this.drawables[i],r.get_type()!==a){can_composite=!1;break}r instanceof et&&o++}if(this.drawables[0]instanceof Z?this.action_icons.composite_icon.show():(this.action_icons.composite_icon.hide(),t(".tooltip").remove()),o>1&&o===this.drawables.length){var s,l={};for(r=this.drawables[0],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],l[s.name]=[s];for(i=1;i<this.drawables.length;i++)for(r=this.drawables[i],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],s.name in l&&l[s.name].push(s);this.filters_manager.remove_all();var u,c;for(var h in l)u=l[h],u.length===o&&(c=new x.default.NumberFilter({name:u[0].name,index:u[0].index}),this.filters_manager.add_filter(c));this.action_icons.filters_icon.toggle(this.filters_manager.filters.length>0)}else this.action_icons.filters_icon.hide()}},_restore_filter_managers:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].filters_manager=this.saved_filters_managers[t];this.saved_filters_managers=[]},setup_multitrack_filtering:function(){if(this.filters_manager.filters.length>0){this.saved_filters_managers=[];for(var t=0;t<this.drawables.length;t++){var e=this.drawables[t];this.saved_filters_managers.push(e.filters_manager),e.filters_manager=this.filters_manager}}this.filters_manager.init_filters()},show_composite_track:function(){var t=new K(this.view,this.view,{name:this.config.get_value("name"),drawables:this.drawables});this.container.replace_drawable(this,t,!0);t.request_draw()},add_drawable:function(t){L.prototype.add_drawable.call(this,t),this.update_icons()},remove_drawable:function(t){L.prototype.remove_drawable.call(this,t),this.update_icons()},to_dict:function(){this.filters_manager.visible()&&this._restore_filter_managers();var t=$(L.prototype.to_dict.call(this),{filters:this.filters_manager.to_dict()});return this.filters_manager.visible()&&this.setup_multitrack_filtering(),t},request_draw:function(t){c.each(this.drawables,function(e){e.request_draw(t)})}});var z=n.View.extend({initialize:function(t){$(t,{obj_type:"View"}),L.call(this,"View",t.container,t),this.chrom=null,this.vis_id=t.vis_id,this.dbkey=t.dbkey,this.stand_alone=void 0===t.stand_alone||t.stand_alone,this.label_tracks=[],this.tracks_to_be_redrawn=[],this.max_low=0,this.max_high=0,this.zoom_factor=3,this.min_separation=30,this.has_changes=!1,this.load_chroms_deferred=null,this.render(),this.canvas_manager=new d.default.CanvasManager(this.container.get(0).ownerDocument),this.reset(),this.config=A.default.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"}],{name:t.name})},render:function(){this.requested_redraw=!1;var e=this.container,i=this;this.top_container=t("<div/>").addClass("top-container").appendTo(e),this.browser_content_div=t("<div/>").addClass("content").appendTo(e),this.bottom_container=t("<div/>").addClass("bottom-container").appendTo(e),this.top_labeltrack=t("<div/>").addClass("top-labeltrack").appendTo(this.top_container),this.viewport_container=t("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div),this.content_div=this.viewport_container,j(this.viewport_container,i),this.intro_div=t("<div/>").addClass("intro").appendTo(this.viewport_container);t("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){d.default.select_datasets({dbkey:i.dbkey},function(t){c.each(t,function(t){i.add_drawable(at(t,i,i))})})});this.nav_container=t("<div/>").addClass("trackster-nav-container").prependTo(this.top_container),this.nav=t("<div/>").addClass("trackster-nav").appendTo(this.nav_container),this.stand_alone&&(this.nav_container.addClass("stand-alone"),this.nav.addClass("stand-alone")),this.overview=t("<div/>").addClass("overview").appendTo(this.bottom_container),this.overview_viewport=t("<div/>").addClass("overview-viewport").appendTo(this.overview),this.overview_close=t("<a/>").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport),this.overview_highlight=t("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport),this.overview_box_background=t("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport),this.overview_box=t("<div/>").addClass("overview-box").appendTo(this.overview_viewport),this.default_overview_height=this.overview_box.height(),this.nav_controls=t("<div/>").addClass("nav-controls").appendTo(this.nav),this.chrom_select=t("<select/>").attr({name:"chrom"}).addClass("chrom-nav").append("<option value=''>Loading</option>").appendTo(this.nav_controls);var n=function(e){"focusout"!==e.type&&13!==(e.keyCode||e.which)&&27!==(e.keyCode||e.which)||(27!==(e.keyCode||e.which)&&i.go_to(t(this).val()),t(this).hide(),t(this).val(""),i.location_span.show(),i.chrom_select.show()),e.stopPropagation()};this.nav_input=t("<input/>").addClass("nav-input").hide().bind("keyup focusout",n).appendTo(this.nav_controls),this.location_span=t("<span/>").addClass("location").attr("title","Click to change location").tooltip({placement:"bottom"}).appendTo(this.nav_controls),this.location_span.click(function(){i.location_span.hide(),i.chrom_select.hide(),i.nav_input.val(i.chrom+":"+i.low+"-"+i.high),i.nav_input.css("display","inline-block"),i.nav_input.select(),i.nav_input.focus(),i.nav_input.autocomplete({source:function(e,n){var r=[],a=t.map(i.get_tracks(et),function(t){return t.data_manager.search_features(e.term).success(function(t){r=r.concat(t)})});t.when.apply(t,a).done(function(){n(t.map(r,function(t){return{label:t[0],value:t[1]}}))})},minLength:2})}),void 0!==this.vis_id&&(this.hidden_input=t("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)),this.zo_link=t("<a/>").attr("id","zoom-out").attr("title","Zoom out").tooltip({placement:"bottom"}).click(function(){i.zoom_out()}).appendTo(this.nav_controls),this.zi_link=t("<a/>").attr("id","zoom-in").attr("title","Zoom in").tooltip({placement:"bottom"}).click(function(){i.zoom_in()}).appendTo(this.nav_controls),this.load_chroms_deferred=this.load_chroms({low:0}),this.chrom_select.bind("change",function(){i.change_chrom(i.chrom_select.val())}),this.browser_content_div.click(function(e){t(this).find("input").trigger("blur")}),this.browser_content_div.bind("dblclick",function(t){i.zoom_in(t.pageX,this.viewport_container)}),this.overview_box.bind("dragstart",function(t,e){this.current_x=e.offsetX}).bind("drag",function(t,e){var n=e.offsetX-this.current_x;this.current_x=e.offsetX;var r=Math.round(n/i.viewport_container.width()*(i.max_high-i.max_low));i.move_delta(-r)}),this.overview_close.click(function(){i.reset_overview()}),this.viewport_container.bind("draginit",function(t,e){if(t.clientX>i.viewport_container.width()-16)return!1}).bind("dragstart",function(t,e){e.original_low=i.low,e.current_height=t.clientY,e.current_x=e.offsetX}).bind("drag",function(e,n){var r=t(this),a=n.offsetX-n.current_x,o=r.scrollTop()-(e.clientY-n.current_height);r.scrollTop(o),n.current_height=e.clientY,n.current_x=n.offsetX;var s=Math.round(a/i.viewport_container.width()*(i.high-i.low));i.move_delta(s)}),this.top_labeltrack.bind("dragstart",function(e,n){return t("<div/>").addClass("zoom-area").css("height",i.browser_content_div.height()+i.top_labeltrack.height()+1).appendTo(t(this))}).bind("drag",function(e,n){t(n.proxy).css({left:Math.min(e.pageX,n.startX)-i.container.offset().left,width:Math.abs(e.pageX-n.startX)});var r=Math.min(e.pageX,n.startX)-i.container.offset().left,a=Math.max(e.pageX,n.startX)-i.container.offset().left,o=i.high-i.low,s=i.viewport_container.width();i.update_location(Math.round(r/s*o)+i.low,Math.round(a/s*o)+i.low)}).bind("dragend",function(e,n){var r=Math.min(e.pageX,n.startX),a=Math.max(e.pageX,n.startX),o=i.high-i.low,s=i.viewport_container.width(),l=i.low;i.low=Math.round(r/s*o)+l,i.high=Math.round(a/s*o)+l,t(n.proxy).remove(),i.request_redraw()}),this.add_label_track(new J(this,{content_div:this.top_labeltrack})),t(window).bind("resize",function(){this.resize_timer&&clearTimeout(this.resize_timer),this.resize_timer=setTimeout(function(){i.resize_window()},500)}),t(document).bind("redraw",function(){i.redraw()}),this.reset(),t(window).trigger("resize")},get_base_color:function(t){return this.config.get_value(t.toLowerCase()+"_color")||this.config.get_value("n_color")}});$(z.prototype,L.prototype,{changed:function(){this.has_changes=!0},update_intro_div:function(){this.intro_div.toggle(0===this.drawables.length)},trigger_navigate:function(t,e,i,n){if(this.timer&&clearTimeout(this.timer),n){var r=this;this.timer=setTimeout(function(){r.trigger("navigate",t+":"+e+"-"+i)},500)}else view.trigger("navigate",t+":"+e+"-"+i)},update_location:function(t,e){this.location_span.text(v.default.commatize(t)+" - "+v.default.commatize(e)),this.nav_input.val(this.chrom+":"+v.default.commatize(t)+"-"+v.default.commatize(e));var i=this.chrom_select.val();""!==i&&this.trigger_navigate(i,this.low,this.high,!0)},load_chroms:function(e){e.num=100;var i=this,n=t.Deferred();return t.ajax({url:Galaxy.root+"api/genomes/"+this.dbkey,data:e,dataType:"json",success:function(e){if(0!==e.chrom_info.length){if(e.reference){var r=new Q(i);i.add_label_track(r),i.reference_track=r}i.chrom_data=e.chrom_info,i.chrom_select.html(""),i.chrom_select.append(t('<option value="">Select Chrom/Contig</option>'));for(var a=0,o=i.chrom_data.length;a<o;a++){var s=i.chrom_data[a].chrom,l=t("<option>");l.text(s),l.val(s),i.chrom_select.append(l)}e.prev_chroms&&i.chrom_select.append(t('<option value="previous">Previous 100</option>')),e.next_chroms&&i.chrom_select.append(t('<option value="next">Next 100</option>')),i.chrom_start_index=e.start_index,n.resolve(e.chrom_info)}},error:function(){alert("Could not load chroms for this dbkey: "+i.dbkey)}}),n},change_chrom:function(e,i,n){var r=this;if(!r.chrom_data)return void r.load_chroms_deferred.then(function(){r.change_chrom(e,i,n)});if(e&&"None"!==e){if("previous"===e)return void r.load_chroms({low:this.chrom_start_index-100});if("next"===e)return void r.load_chroms({low:this.chrom_start_index+100});var a=t.grep(r.chrom_data,function(t,i){return t.chrom===e})[0];if(void 0===a)return void r.load_chroms({chrom:e},function(){r.change_chrom(e,i,n)});if(e!==r.chrom){r.chrom=e,r.chrom_select.val(r.chrom),r.max_high=a.len-1,r.reset();for(var o=0,s=r.drawables.length;o<s;o++){var l=r.drawables[o];l.init&&l.init()}r.reference_track&&r.reference_track.init()}void 0===i&&void 0===n?(r.low=0,r.high=r.max_high):(r.low=void 0!==i?Math.max(i,0):0,void 0===n?(r.low=Math.max(r.low-15,0),r.high=r.low+30):r.high=Math.min(n,r.max_high)),r.request_redraw()}},go_to:function(t){t=t.replace(/,/g,""),t=t.replace(/:|\-/g," ");var e=t.split(/\s+/),i=e[0],n=e[1]?parseInt(e[1],10):void 0,r=e[2]?parseInt(e[2],10):void 0;this.change_chrom(i,n,r)},move_fraction:function(t){var e=this,i=e.high-e.low;this.move_delta(t*i)},move_delta:function(t){var e=this,i=e.high-e.low;e.low-t<e.max_low?(e.low=e.max_low,e.high=e.max_low+i):e.high-t>e.max_high?(e.high=e.max_high,e.low=e.max_high-i):(e.high-=t,e.low-=t),e.request_redraw({data_fetch:!1}),this.redraw_on_move_fn&&clearTimeout(this.redraw_on_move_fn),this.redraw_on_move_fn=setTimeout(function(){e.request_redraw()},200);var n=e.chrom_select.val();this.trigger_navigate(n,e.low,e.high,!0)},add_drawable:function(t){L.prototype.add_drawable.call(this,t),t.init(),this.changed(),this.update_intro_div();var e=this;t.config.on("change",function(){e.changed()})},add_label_track:function(t){t.view=this,t.init(),this.label_tracks.push(t)},remove_drawable:function(e,i){if(L.prototype.remove_drawable.call(this,e),i){var n=this;e.container_div.hide(0,function(){t(this).remove(),n.update_intro_div()})}},reset:function(){this.low=this.max_low,this.high=this.max_high,this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(t,e){var i=this,n=e?[e]:i.drawables;c.each(n,function(e){var n=c.find(i.tracks_to_be_redrawn,function(t){return t[0]===e});n?n[1]=t:i.tracks_to_be_redrawn.push([e,t])}),this.requested_redraw||(requestAnimationFrame(function(){i._redraw()}),this.requested_redraw=!0)},_redraw:function(){this.requested_redraw=!1;var t=this.low,e=this.high;t<this.max_low&&(t=this.max_low),e>this.max_high&&(e=this.max_high);var i=this.high-this.low;0!==this.high&&i<this.min_separation&&(e=t+this.min_separation),this.low=Math.floor(t),this.high=Math.ceil(e),this.update_location(this.low,this.high),this.resolution_px_b=this.viewport_container.width()/(this.high-this.low);var n=this.low/(this.max_high-this.max_low)*this.overview_viewport.width()||0,r=(this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width()||0;this.overview_box.css({left:n,width:Math.max(13,r)}).show(),r<13&&this.overview_box.css("left",n-(13-r)/2),this.overview_highlight&&this.overview_highlight.css({left:n,width:r}),c.each(this.tracks_to_be_redrawn,function(t){var e=t[0],i=t[1];e&&e._draw(i)}),this.tracks_to_be_redrawn=[],c.each(this.label_tracks,function(t){t._draw()})},zoom_in:function(t,e){if(!(0===this.max_high||this.high-this.low<=this.min_separation)){var i=this.high-this.low,n=i/2+this.low,r=i/this.zoom_factor/2;t&&(n=t/this.viewport_container.width()*(this.high-this.low)+this.low),this.low=Math.round(n-r),this.high=Math.round(n+r),this.changed(),this.request_redraw()}},zoom_out:function(){if(0!==this.max_high){var t=this.high-this.low,e=t/2+this.low,i=t*this.zoom_factor/2;this.low=Math.round(e-i),this.high=Math.round(e+i),this.changed(),this.request_redraw()}},resize_viewport:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height())},resize_window:function(){this.resize_viewport(),this.request_redraw()},set_overview:function(t){if(this.overview_drawable){if(this.overview_drawable.dataset.id===t.dataset.id)return;this.overview_viewport.find(".track").remove()}var e=t.copy({content_div:this.overview_viewport}),i=this;e.header_div.hide(),e.is_overview=!0,i.overview_drawable=e,this.overview_drawable.postdraw_actions=function(){i.overview_highlight.show().height(i.overview_drawable.content_div.height()),i.overview_viewport.height(i.overview_drawable.content_div.height()+i.overview_box.outerHeight()),i.overview_close.show(),i.resize_window()},i.overview_drawable.request_draw(),this.changed()},reset_overview:function(){t(".tooltip").remove(),this.overview_viewport.find(".track-tile").remove(),this.overview_viewport.height(this.default_overview_height),this.overview_box.height(this.default_overview_height),this.overview_close.hide(),this.overview_highlight.hide(),view.resize_window(),view.overview_drawable=null}});var q=T.default.Tool.extend({defaults:{track:null},initialize:function(t){T.default.Tool.prototype.initialize.call(this,t);var e=!0;void 0!==t.tool_state&&void 0!==t.tool_state.hidden&&(e=t.tool_state.hidden),this.set("hidden",e),this.remove_inputs(["data","hidden_data","conditional"])},state_dict:function(t){return c.extend(this.get_inputs_dict(),{hidden:!this.is_visible()})}}),F=n.View.extend({events:{"change :input":"update_value"},render:function(){var e=this.$el.addClass("param-row"),i=this.model;t("<div>").addClass("param-label").text(i.get("label")).appendTo(e);t("<div/>").addClass("param-input").html(i.get("html")).appendTo(e).find(":input").val(i.get("value")),t("<div style='clear: both;'/>").appendTo(e)},update_value:function(e){this.model.set_value(t(e.target).val())}}),B=n.View.extend({initialize:function(t){this.model.on("change:hidden",this.set_visible,this)},render:function(){var e=this,i=this.model,n=this.$el.addClass("dynamic-tool").hide();n.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).keydown(function(t){t.stopPropagation()});t("<div class='tool-name'>").appendTo(n).text(i.get("name"));i.get("inputs").each(function(t){var e=new F({model:t});e.render(),n.append(e.$el)}),n.find("input").click(function(){t(this).select()});var r=t("<div>").addClass("param-row").appendTo(n),a=t("<input type='submit'>").attr("value","Run on complete dataset").appendTo(r);t("<input type='submit'>").attr("value","Run on visible region").appendTo(r).click(function(){e.run_on_region()}),a.click(function(){e.run_on_dataset()}),i.is_visible()&&this.$el.show()},set_visible:function(){this.$el.toggle(this.model.is_visible())},update_params:function(){for(var t=0;t<this.params.length;t++)this.params[t].update_value()},run_on_dataset:function(){var t=this.model;this.run({target_dataset_id:this.model.get("track").dataset.id,action:"rerun",tool_id:t.id},null,function(e){Galaxy.modal.show({title:t.get("name")+" is Running",body:t.get("name")+" is running on the complete dataset. Tool outputs are in dataset's history.",buttons:{Close:function(){Galaxy.modal.hide()}}})})},run_on_region:function(){var t,e=this.model.get("track"),i=this.model,n=new d.default.GenomeRegion({chrom:e.view.chrom,start:e.view.low,end:e.view.high}),r={target_dataset_id:e.dataset.id,action:"rerun",tool_id:i.id,regions:[n.toJSON()]},a=e,o=i.get("name")+a.tool_region_and_parameters_str(n);if(a.container===view){var s=new H(view,view,{name:e.config.get_value("name")}),l=a.container.replace_drawable(a,s,!1);s.container_div.insertBefore(a.view.content_div.children()[l]),s.add_drawable(a),a.container_div.appendTo(s.content_div),t=s}else t=a.container;var u=new a.constructor(view,t,{name:o,hda_ldda:"hda"});u.init_for_tool_data(),u.change_mode(a.mode),u.set_filters_manager(a.filters_manager.copy(u)),u.update_icons(),t.add_drawable(u),u.tiles_div.text("Starting job."),this.run(r,u,function(t){u.set_dataset(new C.default.Dataset(t)),u.tiles_div.text("Running job."),u.init()})},run:function(e,i,n){e.inputs=this.model.get_inputs_dict();var r=new v.default.ServerStateDeferred({ajax_settings:{url:Galaxy.root+"api/tools",data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});t.when(r.go()).then(function(t){"no converter"===t?(i.container_div.addClass("error"),i.content_div.text(R)):t.error?(i.container_div.addClass("error"),i.content_div.text("Tool cannot be rerun: "+t.message)):n(t)})}}),V=function(t,e){b.default.Scaler.call(this,e),this.filter=t};V.prototype.gen_val=function(t){return this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high?this.default_val:(parseFloat(t[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low)};var U=function(e,i,n,r,a){this.track=e,this.region=i,this.low=i.get("start"),this.high=i.get("end"),this.w_scale=n,this.canvas=r,this.html_elt=t("<div class='track-tile'/>").append(r),this.data=a,this.stale=!1};U.prototype.predisplay_actions=function(){};var W=function(t,e,i,n,r){U.call(this,t,e,i,n,r)};W.prototype.predisplay_actions=function(){};var G=function(t,e,i,n,r,a,o,s,l,u,c){U.call(this,t,e,i,n,r),this.mode=a,this.all_slotted=s,this.feature_mapper=l,this.has_icons=!1,this.incomplete_features=u,this.other_tiles_features_drawn={},this.seq_data=c};$(G.prototype,U.prototype),G.prototype.predisplay_actions=function(){};var X=function(e,i,r){$(r,{drag_handle_class:"draghandle"}),I.call(this,e,i,r),this.dataset=null,r.dataset&&(this.dataset=r.dataset instanceof n.Model?r.dataset:new C.default.Dataset(r.dataset)),this.dataset_check_type="converted_datasets_state",this.data_url_extra_params={},this.data_query_wait="data_query_wait"in r?r.data_query_wait:5e3,this.data_manager="data_manager"in r?r.data_manager:new d.default.GenomeDataManager({dataset:this.dataset,genome:new d.default.Genome({key:e.dbkey,chroms_info:{chrom_info:e.chrom_data}}),data_mode_compatible:this.data_and_mode_compatible,can_subset:this.can_subset}),this.min_height_px=16,this.max_height_px=800,this.visible_height_px=this.config.get_value("height"),this.content_div=t("<div class='track-content'>").appendTo(this.container_div),this.container&&(this.container.content_div.append(this.container_div),"resize"in r&&!r.resize||this.add_resize_handle())};$(X.prototype,I.prototype,{action_icons_def:[{name:"mode_icon",title:(0,l.default)("Set display mode"),css_class:"chevron-expand",on_click_fn:function(){}},I.prototype.action_icons_def[0],{name:"overview_icon",title:(0,l.default)("Set as overview"),css_class:"application-dock-270",on_click_fn:function(t){t.view.set_overview(t)}},I.prototype.action_icons_def[1],{name:"filters_icon",title:(0,l.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?t.filters_manager.clear_filters():t.filters_manager.init_filters(),t.filters_manager.toggle()}},{name:"tools_icon",title:(0,l.default)("Tool"),css_class:"hammer",on_click_fn:function(e){e.tool.toggle(),e.tool.is_visible()?e.set_name(e.config.get_value("name")+e.tool_region_and_parameters_str()):e.revert_name(),t(".tooltip").remove()}},{name:"param_space_viz_icon",title:(0,l.default)("Tool parameter space visualization"),css_class:"arrow-split",on_click_fn:function(e){var i="<strong>Tool</strong>:"+e.tool.get("name")+"<br/><strong>Dataset</strong>:"+e.config.get_value("name")+'<br/><strong>Region(s)</strong>: <select name="regions"><option value="cur">current viewing area</option><option value="bookmarks">bookmarks</option><option value="both">current viewing area and bookmarks</option></select>',r=function(){Galaxy.modal.hide(),t(window).unbind("keypress.check_enter_esc")},a=function(){var i,r=t('select[name="regions"] option:selected').val(),a=new d.default.GenomeRegion({chrom:view.chrom,start:view.low,end:view.high}),o=c.map(t(".bookmark"),function(e){return new d.default.GenomeRegion({from_str:t(e).children(".position").text()})});i="cur"===r?[a]:"bookmarks"===r?o:[a].concat(o),Galaxy.modal.hide(),window.location.href=Galaxy.root+"visualization/sweepster?"+t.param({dataset_id:e.dataset.id,hda_ldda:e.dataset.get("hda_ldda"),regions:JSON.stringify(new n.Collection(i).toJSON())})};Galaxy.modal.show({title:"Visualize tool parameter space and output from different parameter settings?",body:i,buttons:{No:r,Yes:a}})}},I.prototype.action_icons_def[2]],can_draw:function(){return this.dataset&&I.prototype.can_draw.call(this)},build_container_div:function(){return t("<div/>").addClass("track").attr("id","track_"+this.id)},set_dataset:function(t){this.dataset=t,this.data_manager.set("dataset",t)},on_resize:function(){this.request_draw({clear_tile_cache:!0})},add_resize_handle:function(){var e=this,i=!1,n=!1,r=t("<div class='track-resize'>");t(e.container_div).hover(function(){e.config.get_value("content_visible")&&(i=!0,r.show())},function(){i=!1,n||r.hide()}),r.hide().bind("dragstart",function(i,r){n=!0,r.original_height=t(e.content_div).height()}).bind("drag",function(i,n){var r=Math.min(Math.max(n.original_height+n.deltaY,e.min_height_px),e.max_height_px);t(e.tiles_div).css("height",r),e.visible_height_px=e.max_height_px===r?0:r,e.on_resize()}).bind("dragend",function(t,a){e.tile_cache.clear(),n=!1,i||r.hide(),e.config.set_value("height",e.visible_height_px),e.changed()}).appendTo(e.container_div)},hide_contents:function(){this.tiles_div.hide(),this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.tiles_div.show(),this.container_div.find(".yaxislabel, .track-resize").show(),this.request_draw()},get_type:function(){return this instanceof J?"LabelTrack":this instanceof Q?"ReferenceTrack":this instanceof Z?"LineTrack":this instanceof nt?"ReadTrack":this instanceof it?"VariantTrack":this instanceof K?"CompositeTrack":this instanceof et?"FeatureTrack":""},show_message:function(e){return this.tiles_div.remove(),t("<span/>").addClass("message").html(e).appendTo(this.content_div)},init:function(e){var i=this;if(i.enabled=!1,i.tile_cache.clear(),i.data_manager.clear(),i.content_div.children().remove(),i.container_div.removeClass("nodata error pending"),i.tiles_div=t("<div/>").addClass("tiles").appendTo(i.content_div),i.dataset.id){var n=t.Deferred(),r={hda_ldda:i.dataset.get("hda_ldda"),data_type:this.dataset_check_type,chrom:i.view.chrom,retry:e};return t.getJSON(this.dataset.url(),r,function(e){if(e&&"error"!==e&&"error"!==e.kind)"no converter"===e?(i.container_div.addClass("error"),i.show_message(R)):"no data"===e||void 0!==e.data&&(null===e.data||0===e.data.length)?(i.container_div.addClass("nodata"),i.show_message("No data for this chrom/contig.")):"pending"===e?(i.container_div.addClass("pending"),i.show_message("Preparing data. This can take a while for a large dataset. If the visualization is saved and closed, preparation will continue in the background."),setTimeout(function(){i.init()},i.data_query_wait)):"data"!==e&&"data"!==e.status||(e.valid_chroms&&(i.valid_chroms=e.valid_chroms,i.update_icons()),i.tiles_div.text("Ready for display"),i.view.chrom?(i.tiles_div.text(""),i.tiles_div.css("height",i.visible_height_px+"px"),i.enabled=!0,t.when.apply(t,i.predraw_init()).done(function(){n.resolve(),i.container_div.removeClass("nodata error pending"),i.request_draw()})):n.resolve());else{i.container_div.addClass("error");var r=i.show_message("Cannot display dataset due to an error. ");e.message&&(r.append(t("<a href='javascript:void(0);'></a>").text("View error").click(function(){Galaxy.modal.show({title:(0,l.default)("Trackster Error"),body:"<pre>"+e.message+"</pre>",buttons:{Close:function(){Galaxy.modal.hide()}}})})),r.append(t("<span/>").text(" ")),r.append(t("<a href='javascript:void(0);'></a>").text("Try again").click(function(){i.init(!0)})))}}),this.update_icons(),n}},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(i&&void 0!==i.min&&void 0!==i.max){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_default_value("min_value",n),e.config.set_default_value("max_value",r),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},get_drawables:function(){return this}});var Y=function(e,i,n){X.call(this,e,i,n);var r=this;if(P(r.container_div,r.drag_handle_class,".group",r),this.filters_manager=new x.default.FiltersManager(this,"filters"in n?n.filters:null),this.data_manager.set("filters_manager",this.filters_manager),this.filters_available=!1,this.tool=n.tool?new q(c.extend(n.tool,{track:this,tool_state:n.tool_state})):null,this.tile_cache=new d.default.Cache(10),this.left_offset=0,this.header_div&&(this.set_filters_manager(this.filters_manager),this.tool)){var a=new B({model:this.tool});a.render(),this.dynamic_tool_div=a.$el,this.header_div.after(this.dynamic_tool_div)}this.tiles_div=t("<div/>").addClass("tiles").appendTo(this.content_div),this.config.get_value("content_visible")||this.tiles_div.hide(),this.overlay_div=t("<div/>").addClass("overlay").appendTo(this.content_div),n.mode&&this.change_mode(n.mode)};$(Y.prototype,I.prototype,X.prototype,{action_icons_def:X.prototype.action_icons_def.concat([{name:"show_more_rows_icon",title:"To minimize track height, not all feature rows are displayed. Click to display more rows.",css_class:"exclamation",on_click_fn:function(e){t(".tooltip").remove(),e.slotters[e.view.resolution_px_b].max_rows*=2,e.request_draw({clear_tile_cache:!0})},hide:!0}]),copy:function(t){var e=this.to_dict();$(e,{data_manager:this.data_manager});var i=new this.constructor(this.view,t,e);return i.change_mode(this.mode),i.enabled=this.enabled,i},set_filters_manager:function(t){this.filters_manager=t,this.header_div.after(this.filters_manager.parent_div)},to_dict:function(){return{track_type:this.get_type(),dataset:{id:this.dataset.id,hda_ldda:this.dataset.get("hda_ldda")},prefs:this.config.to_key_value_dict(),mode:this.mode,filters:this.filters_manager.to_dict(),tool_state:this.tool?this.tool.state_dict():{}}},set_min_max:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(isNaN(parseFloat(e.config.get_value("min_value")))||isNaN(parseFloat(e.config.get_value("max_value")))){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},change_mode:function(t){var e=this;return e.mode=t,e.config.set_value("mode",t),"Auto"===t&&this.data_manager.clear(),e.request_draw({clear_tile_cache:!0}),this.action_icons.mode_icon.attr("title","Set display mode (now: "+e.mode+")"),e},update_icons:function(){var t=this;t.action_icons.filters_icon.toggle(t.filters_available),t.action_icons.tools_icon.toggle(null!==t.tool),t.action_icons.param_space_viz_icon.toggle(null!==t.tool)},_gen_tile_cache_key:function(t,e){return t+"_"+e},request_draw:function(t){t&&t.clear_tile_cache&&this.tile_cache.clear(),this.view.request_redraw(t,this)},before_draw:function(){this.max_height_px=0},_draw:function(e){if(this.can_draw()){var i=e&&e.clear_after,n=this.view.low,r=this.view.high,a=this.view.container.width(),o=this.view.resolution_px_b,s=1/o;this.is_overview&&(n=this.view.max_low,r=this.view.max_high,o=a/(view.max_high-view.max_low),s=1/o),this.before_draw(),this.tiles_div.children().addClass("remove");for(var l,u,h=Math.floor(400*s),f=Math.floor(n/h),p=[],m=[];f*h<r;)l=new d.default.GenomeRegion({chrom:this.view.chrom,start:f*h,end:Math.min((f+1)*h,this.view.max_high)}),u=this.draw_helper(l,o,e),p.push(u),t.when(u).then(function(t){m.push(t)}),f+=1;i||this.tiles_div.children(".remove").removeClass("remove").remove();var v=this;t.when.apply(t,p).then(function(){v.tiles_div.children(".remove").remove(),m=c.filter(m,function(t){return null!==t}),0!==m.length&&v.postdraw_actions(m,a,o,i)})}},_add_yaxis_label:function(e,i){var n=this,r="max"===e?"top":"bottom",o="max"===e?"max":"min",s="max"===e?"max_value":"min_value",l=this.container_div.find(".yaxislabel."+r),u=a(n.config.get_value(s),1);i=i||function(){n.request_draw({clear_tile_cache:!0})},0!==l.length?l.text(u):(l=t("<div/>").text(u).make_text_editable({num_cols:12,on_finish:function(e){t(".tooltip").remove(),n.config.set_value(s,a(e,1)),i()},help_text:"Set "+o+" value"}).addClass("yaxislabel "+r).css("color",this.config.get_value("label_color")),this.container_div.prepend(l))},postdraw_actions:function(t,e,i,n){if(c.filter(t,function(t){return t instanceof W}).length>0){this.max_height_px=0;var r=this;c.each(t,function(t){t instanceof W||(t.html_elt.remove(),r.draw_helper(t.region,i,{force:!0,mode:"Coverage"}))}),r._add_yaxis_label("max")}else this.container_div.find(".yaxislabel").remove(),c.find(t,function(t){return t.has_icons})&&c.each(t,function(t){t.has_icons||t.html_elt.css("padding-top",20)})},get_mode:function(t){return this.mode},update_auto_mode:function(t){},_get_drawables:function(){return[this]},draw_helper:function(e,i,n){n||(n={});var r=n.force,a=n.mode||this.mode,o=1/i,s=this,l=this._get_drawables(),u=this._gen_tile_cache_key(i,e),h=r?void 0:s.tile_cache.get_elt(u);if(h)return function(t){return t&&"track"in t}(h)&&s.show_tile(h,i),h;if(!1===n.data_fetch)return null;var d=function(){var t=c.find(N,function(t){return t===a})?"Coverage":a,i=c.map(l,function(i){return i.data_manager.get_data(e,t,o,s.data_url_extra_params)});return view.reference_track&&i.push(view.reference_track.data_manager.get_data(e,a,o,view.reference_track.data_url_extra_params)),i},f=t.Deferred();return s.tile_cache.set_elt(u,f),t.when.apply(t,d()).then(function(){var r,a=d(),o=a;if(c.find(a,function(t){return v.default.is_deferred(t)}))return s.tile_cache.set_elt(u,void 0),void t.when(s.draw_helper(e,i,n)).then(function(t){f.resolve(t)});view.reference_track&&(r=view.reference_track.data_manager.subset_entry(a.pop(),e));var h=[],p=[];c.each(l,function(t,e){var n=t.mode,r=o[e];"Auto"===n&&(n=t.get_mode(r),t.update_auto_mode(n)),h.push(n),p.push(t.get_canvas_height(r,n,i,b))});var m,g=s.view.canvas_manager.new_canvas(),_=e.get("start"),y=e.get("end"),b=Math.ceil((y-_)*i)+s.left_offset,w=c.max(p);g.width=b,g.height=n.height||w;var x=g.getContext("2d");x.translate(s.left_offset,0),l.length>1&&(x.globalAlpha=.5,x.globalCompositeOperation="source-over"),c.each(l,function(t,n){m=t.draw_tile(o[n],x,h[n],e,i,r)}),void 0!==m&&(s.tile_cache.set_elt(u,m),s.show_tile(m,i)),f.resolve(m)}),f},get_canvas_height:function(t,e,i,n){return this.visible_height_px},_draw_line_track_tile:function(t,e,i,n,r){-1!==[void 0,null].indexOf(this.config.get_value("min_value"))&&this.config.set_value("min_value",0),-1!==[void 0,null,0].indexOf(this.config.get_value("max_value"))&&this.config.set_value("max_value",c.max(c.map(t.data,function(t){return t[1]}))||0);var a=e.canvas;return new b.default.LinePainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new W(this,n,r,a,t.data)},draw_tile:function(t,e,i,n,r,a){},show_tile:function(t,e){var i=t.html_elt;t.predisplay_actions();var n=Math.round((t.low-(this.is_overview?this.view.max_low:this.view.low))*e);this.left_offset&&(n-=this.left_offset),i.css("left",n),i.hasClass("remove")?i.removeClass("remove"):this.tiles_div.append(i),i.css("height","auto"),this.max_height_px=Math.max(this.max_height_px,i.height()-2),i.parent().children().css("height",this.max_height_px+"px");var r=this.max_height_px;0!==this.visible_height_px&&(r=Math.min(this.max_height_px,this.visible_height_px)),this.tiles_div.css("height",r+"px")},tool_region_and_parameters_str:function(t){var e=this;return" - region=["+(void 0!==t?t.toString():"all")+"], parameters=["+c.values(e.tool.get_inputs_dict()).join(", ")+"]"},data_and_mode_compatible:function(t,e){return"Auto"===e||("Coverage"===e?"bigwig"===t.dataset_type:"bigwig"!==t.dataset_type&&"no_detail"!==t.extra_info)},can_subset:function(t){return!t.message&&"no_detail"!==t.extra_info&&("bigwig"!==t.dataset_type||t.data[1][0]-t.data[0][0]==1)},init_for_tool_data:function(){this.data_manager.set("data_type","raw_data"),this.data_query_wait=1e3,this.dataset_check_type="state"}});var J=function(t,e){X.call(this,t,e,{resize:!1,header:!1}),this.container_div.addClass("label-track")};$(J.prototype,X.prototype,{init:function(){this.enabled=!0},predraw_init:function(){},_draw:function(e){for(var i=this.view,n=i.high-i.low,r=Math.floor(Math.pow(10,Math.floor(Math.log(n)/Math.log(10)))),a=Math.floor(i.low/r)*r,o=this.view.container.width(),s=t("<div/>").addClass("label-container");a<i.high;){var l=Math.floor((a-i.low)/n*o);s.append(t("<div/>").addClass("pos-label").text(v.default.commatize(a)).css({left:l})),a+=r}this.content_div.children(":first").remove(),this.content_div.append(s)}});var K=function(t,e,i){if(Y.call(this,t,e,i),this.drawables=[],"drawables"in i){for(var n,r=0;r<i.drawables.length;r++)n=i.drawables[r],this.drawables[r]=at(n,t,null),n.left_offset>this.left_offset&&(this.left_offset=n.left_offset);this.enabled=!0}c.each(this.drawables,function(t){(t instanceof et||t instanceof nt)&&t.change_mode("Coverage")}),this.update_icons(),this.obj_type="CompositeTrack"};$(K.prototype,Y.prototype,{display_modes:N,build_config_params:function(){return c.union(I.prototype.config_params,[{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},action_icons_def:[{name:"composite_icon",title:(0,l.default)("Show individual tracks"),css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_group()}}].concat(Y.prototype.action_icons_def),to_dict:L.prototype.to_dict,add_drawable:L.prototype.add_drawable,unpack_drawables:L.prototype.unpack_drawables,config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},on_resize:function(){var t=this.visible_height_px;c.each(this.drawables,function(e){e.visible_height_px=t}),X.prototype.on_resize.call(this)},change_mode:function(t){Y.prototype.change_mode.call(this,t);for(var e=0;e<this.drawables.length;e++)this.drawables[e].change_mode(t)},init:function(){for(var e=[],i=0;i<this.drawables.length;i++)e.push(this.drawables[i].init());var n=this;t.when.apply(t,e).then(function(){n.enabled=!0,n.request_draw()})},update_icons:function(){this.action_icons.filters_icon.hide(),this.action_icons.tools_icon.hide(),this.action_icons.param_space_viz_icon.hide()},can_draw:I.prototype.can_draw,_get_drawables:function(){return this.drawables},show_group:function(){for(var t,e=new H(this.view,this.container,{name:this.config.get_value("name")}),i=0;i<this.drawables.length;i++)t=this.drawables[i],t.update_icons(),e.add_drawable(t),t.container=e,e.content_div.append(t.container_div);this.container.replace_drawable(this,e,!0);e.request_draw({clear_tile_cache:!0})},before_draw:function(){var t=c.min(c.map(this.drawables,function(t){return t.config.get_value("min_value")})),e=c.max(c.map(this.drawables,function(t){return t.config.get_value("max_value")}));this.config.set_value("min_value",t),this.config.set_value("max_value",e),c.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)})},update_all_min_max:function(){var t=this.config.get_value("min_value"),e=this.config.get_value("max_value");c.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)}),this.request_draw({clear_tile_cache:!0})},postdraw_actions:function(t,e,i,n){var r,a=-1;for(r=0;r<t.length;r++){var o=t[r].html_elt.find("canvas").height();o>a&&(a=o)}for(r=0;r<t.length;r++){var s=t[r];s.html_elt.find("canvas").height()!==a&&(this.draw_helper(s.region,i,{force:!0,height:a}),s.html_elt.remove())}var l=this,u=function(){l.update_all_min_max()};this._add_yaxis_label("min",u),this._add_yaxis_label("max",u)}});var Q=function(t){Y.call(this,t,{content_div:t.top_labeltrack},{resize:!1,header:!1}),this.left_offset=t.canvas_manager.char_width_px,this.container_div.addClass("reference-track"),this.data_url=Galaxy.root+"api/genomes/"+this.view.dbkey,this.data_url_extra_params={reference:!0},this.data_manager=new d.default.GenomeReferenceDataManager({data_url:this.data_url,can_subset:this.can_subset}),this.hide_contents()};$(Q.prototype,I.prototype,Y.prototype,{build_config_params:function(){return c.union(I.prototype.config_params,[{key:"height",type:"int",default_value:13,hidden:!0}])},init:function(){this.data_manager.clear(),this.enabled=!0},predraw_init:function(){},can_draw:I.prototype.can_draw,draw_helper:function(t,e,i){var n,r=this.tiles_div.is(":visible"),a=null;return e>this.view.canvas_manager.char_width_px?(this.tiles_div.show(),n=!0,a=Y.prototype.draw_helper.call(this,t,e,i)):(n=!1,this.tiles_div.hide()),r!==n&&this.view.resize_viewport(),a},can_subset:function(t){return!0},draw_tile:function(t,e,i,n,r){var a=this.data_manager.subset_entry(t,n),o=a.data,s=e.canvas;e.font=e.canvas.manager.default_font,e.textAlign="center";for(var l=0,u=o.length;l<u;l++)e.fillStyle=this.view.get_base_color(o[l]),e.fillText(o[l],Math.floor(l*r),10);return new U(this,n,r,s,a)}});var Z=function(e,i,n){this.mode="Histogram",Y.call(this,e,i,n),this.left_offset=30;var r=this;t.when(o(Galaxy.root+"datasets/"+this.dataset.id+"/display")).then(function(t){t&&(r.data_manager=new O.default.BBIDataManager({dataset:r.dataset}))})};$(Z.prototype,I.prototype,Y.prototype,{display_modes:N,build_config_params:function(){return c.union(I.prototype.config_params,[{key:"color",label:"Color",type:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},before_draw:function(){},draw_tile:function(t,e,i,n,r){return this._draw_line_track_tile(t,e,i,n,r)},can_subset:function(t){return t.data[1][0]-t.data[0][0]==1},postdraw_actions:function(t,e,i,n){this._add_yaxis_label("max"),this._add_yaxis_label("min")}});var tt=function(t,e,i){this.mode="Heatmap",Y.call(this,t,e,i)};$(tt.prototype,I.prototype,Y.prototype,{display_modes:["Heatmap"],build_config_params:function(){return c.union(I.prototype.config_params,[{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"min_value",label:"Min Value",type:"int",default_value:void 0},{key:"max_value",label:"Max Value",type:"int",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:500,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){t.data})},draw_tile:function(t,e,i,n,r){var a=e.canvas;return new b.default.DiagonalHeatmapPainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new U(this,n,r,a,t.data)}});var et=function(t,e,i){Y.call(this,t,e,i),this.container_div.addClass("feature-track"),this.summary_draw_height=30,this.slotters={},this.start_end_dct={},this.left_offset=200,this.set_painter_from_config()};$(et.prototype,I.prototype,Y.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return c.union(I.prototype.config_params,[{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0,help:"Show the number of items in each bin when drawing summary histogram"},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.set_painter_from_config(),this.request_draw({clear_tile_cache:!0})},set_painter_from_config:function(){"arcs"===this.config.get_value("connector_style")?this.painter=b.default.ArcLinkedFeaturePainter:this.painter=b.default.LinkedFeaturePainter},postdraw_actions:function(e,i,n,r){Y.prototype.postdraw_actions.call(this,e,i,n,r);var a,o=this;if(0===c.filter(e,function(t){return t instanceof W}).length){var s={};c.each(c.pluck(e,"incomplete_features"),function(t){c.each(t,function(t){s[t[0]]=t})});var l=this;c.each(e,function(e){var i=c.omit(s,c.map(e.incomplete_features,function(t){return t[0]}));if(i=c.omit(i,c.keys(e.other_tiles_features_drawn)),0!==c.size(i)){var n={data:c.values(i)},r=l.view.canvas_manager.new_canvas(),a=r.getContext("2d");r.height=Math.max(e.canvas.height,l.get_canvas_height(n,e.mode,e.w_scale,100)),r.width=e.canvas.width,a.drawImage(e.canvas,0,0),a.translate(o.left_offset,0);var u=l.draw_tile(n,a,e.mode,e.region,e.w_scale,e.seq_data);t(e.canvas).replaceWith(t(u.canvas)),e.canvas=r,c.extend(e.other_tiles_features_drawn,s)}})}if(o.filters_manager){var u,h=o.filters_manager.filters;for(u=0;u<h.length;u++)h[u].update_ui_elt();var d,f,p=!1;for(a=0;a<e.length;a++)if(e[a].data.length)for(d=e[a].data[0],u=0;u<h.length;u++)if(f=h[u],f.applies_to(d)&&f.min!==f.max){p=!0;break}o.filters_available!==p&&(o.filters_available=p,o.filters_available||o.filters_manager.hide(),o.update_icons())}if(e[0]instanceof G){var m=!0;for(a=0;a<e.length;a++)if(!e[a].all_slotted){m=!1;break}this.action_icons.show_more_rows_icon.toggle(!m)}else this.action_icons.show_more_rows_icon.hide()},update_auto_mode:function(t){"Auto"===this.mode&&("no_detail"===t&&(t="feature spans"),this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+t+")"))},incremental_slots:function(t,e,i){var n=this.view.canvas_manager.dummy_context,r=this.slotters[t];return r&&r.mode===i||(r=new _.default.FeatureSlotter(t,i,100,function(t){return n.measureText(t)}),this.slotters[t]=r),r.slot_features(e)},get_mode:function(t){return"no_detail"===t.extra_info||this.is_overview?"no_detail":this.view.high-this.view.low>12e3?"Squish":"Pack"},get_canvas_height:function(t,e,i,n){if("Coverage"===e||"bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.incremental_slots(i,t.data,e),a=new this.painter(null,null,null,this.config.to_key_value_dict(),e);return Math.max(this.min_height_px,a.get_required_height(r,n))},draw_tile:function(t,e,i,n,r,a,o){var s=this,l=e.canvas,u=n.get("start"),c=n.get("end"),h=this.left_offset;if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,i,n,r);var d=[],f=this.slotters[r].slots,p=!0;if(t.data)for(var m=this.filters_manager.filters,v=0,g=t.data.length;v<g;v++){for(var _,y=t.data[v],b=!1,w=0,x=m.length;w<x;w++)if(_=m[w],_.update_attrs(y),!_.keep(y)){b=!0;break}b||(d.push(y),y[0]in f||(p=!1))}var k=this.filters_manager.alpha_filter?new V(this.filters_manager.alpha_filter):null,C=this.filters_manager.height_filter?new V(this.filters_manager.height_filter):null,S=new this.painter(d,u,c,this.config.to_key_value_dict(),i,k,C,a,function(t){return s.view.get_base_color(t)}),T=null;if(e.fillStyle=this.config.get_value("block_color"),e.font=e.canvas.manager.default_font,e.textAlign="right",t.data){var M=S.draw(e,l.width,l.height,r,f);T=M.feature_mapper,incomplete_features=M.incomplete_features,T.translation=-h}return o?void 0:new G(s,n,r,l,t.data,i,t.message,p,T,incomplete_features,a)}});var it=function(t,e,i){Y.call(this,t,e,i),this.painter=b.default.VariantPainter,this.summary_draw_height=30,this.left_offset=30};$(it.prototype,I.prototype,Y.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return c.union(I.prototype.config_params,[{key:"color",label:"Histogram color",type:"color"},{key:"show_sample_data",label:"Show sample data",type:"bool",default_value:!0},{key:"show_labels",label:"Show summary and sample labels",type:"bool",default_value:!0},{key:"summary_height",label:"Locus summary height",type:"float",default_value:20},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},draw_tile:function(t,e,i,n,r){if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,"Histogram",n,r);var a=this.view;return new this.painter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i,function(t){return a.get_base_color(t)}).draw(e,e.canvas.width,e.canvas.height,r),new U(this,n,r,e.canvas,t.data)},get_canvas_height:function(t,e,i,n){if("bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.dataset.get_metadata("sample_names")?this.dataset.get_metadata("sample_names").length:0;return 0===r&&0!==t.data.length&&(r=t.data[0][7].match(/,/g),r=null===r?1:r.length+1),new this.painter(null,null,null,this.config.to_key_value_dict(),e).get_required_height(r)},predraw_init:function(){var t=[X.prototype.predraw_init.call(this)];return this.dataset.get_metadata("sample_names")||t.push(this.dataset.fetch()),t},postdraw_actions:function(e,i,n,r){Y.prototype.postdraw_actions.call(this,e,i,n,r);var a=c.filter(e,function(t){return t instanceof W}),o=this.dataset.get_metadata("sample_names");if(0===a.length&&this.config.get_value("show_labels")&&o&&o.length>1){var s;if(0===this.container_div.find(".yaxislabel.variant").length&&(s=this.config.get_value("summary_height")/2,this.tiles_div.prepend(t("<div/>").text("Summary").addClass("yaxislabel variant top").css({"font-size":s+"px",top:(this.config.get_value("summary_height")-s)/2+"px"})),this.config.get_value("show_sample_data"))){var l=o.join("<br/>");this.tiles_div.prepend(t("<div/>").html(l).addClass("yaxislabel variant top sample").css({top:this.config.get_value("summary_height")}))}s=("Squish"===this.mode?5:10)+"px",t(this.tiles_div).find(".sample").css({"font-size":s,"line-height":s}),t(this.tiles_div).find(".yaxislabel").css("color",this.config.get_value("label_color"))}else this.container_div.find(".yaxislabel.variant").remove()}});var nt=function(t,e,i){et.call(this,t,e,i),this.painter=b.default.ReadPainter,this.update_icons()};$(nt.prototype,I.prototype,Y.prototype,et.prototype,{build_config_params:function(){return c.union(I.prototype.config_params,[{key:"block_color",label:"Histogram color",type:"color"},{key:"detail_block_color",label:"Sense strand block color",type:"color",default_value:"#AAAAAA"},{key:"reverse_strand_color",label:"Antisense strand block color",type:"color",default_value:"#DDDDDD"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:!1},{key:"show_differences",label:"Show differences only",type:"bool",default_value:!0},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})}});var rt={CompositeTrack:K,DrawableGroup:H,DiagonalHeatmapTrack:tt,FeatureTrack:et,LineTrack:Z,ReadTrack:nt,VariantTrack:it,VcfTrack:it},at=function(t,e,i){if("copy"in t)return t.copy(i);var n=t.obj_type;return n||(n=t.track_type),new rt[n](e,i,t)};e.default={TracksterView:z,DrawableGroup:H,LineTrack:Z,FeatureTrack:et,DiagonalHeatmapTrack:tt,ReadTrack:nt,VariantTrack:it,CompositeTrack:K,object_from_template:at}}).call(e,i(0),i(2))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(1),a=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(r),o=t.View.extend({className:"track-header",initialize:function(){this.model.config.get("name").on("change:value",this.update_name,this),this.render()},render:function(){this.$el.append(n("<div/>").addClass(this.model.drag_handle_class)),this.$el.append(n("<div/>").addClass("track-name").text(this.model.config.get_value("name"))),this.action_icons={},this.render_action_icons(),this.$el.dblclick(function(t){t.stopPropagation()}),this.$el.append(n("<div style='clear: both'/>"))},update_name:function(){this.$el.find(".track-name").text(this.model.config.get_value("name"))},render_action_icons:function(){var t=this;this.icons_div=n("<div/>").addClass("track-icons").hide().appendTo(this.$el),a.each(this.model.action_icons_def,function(e){t.add_action_icon(e.name,e.title,e.css_class,e.on_click_fn,e.prepend,e.hide)}),this.set_display_modes(this.model.display_modes)},add_action_icon:function(t,e,i,r,a,o){var s=this;this.action_icons[t]=n("<a/>").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(function(){r(s.model)}).appendTo(this.icons_div),o&&this.action_icons[t].hide()},set_display_modes:function(t,e){if(t){this.model.display_modes=t,this.model.mode=e||this.model.config.get_value("mode")||this.model.display_modes[0],this.action_icons.mode_icon.attr("title","Set display mode (now: "+this.mode+")");for(var i=this.model,n={},r=0,a=i.display_modes.length;r<a;r++){var o=i.display_modes[r];n[o]=function(t){return function(){i.change_mode(t)}}(o)}make_popupmenu(this.action_icons.mode_icon,n)}}});e.default={TrackHeaderView:o}}).call(e,i(2),i(0))},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=r.extend,o=function(t,e){this.slot=t,this.feature=e},s=function(t,e,i,n){this.slots={},this.start_end_dct={},this.w_scale=t,this.mode=e,this.include_label="Pack"===e,this.max_rows=i,this.measureText=n};a(s.prototype,{_get_draw_coords:function(t){var e=Math.floor(t[1]*this.w_scale),i=Math.ceil(t[2]*this.w_scale),n=t[3];if(void 0!==n&&this.include_label){var r=this.measureText(n).width+7;e-r>=0?(e-=r,"left"):(i+=r,"right")}return[e,i]},_find_slot:function(t){for(var e=t[0],i=t[1],n=0;n<=this.max_rows;n++){var r=!1,a=this.start_end_dct[n];if(void 0!==a)for(var o=0,s=a.length;o<s;o++){var l=a[o];if(i>l[0]&&e<l[1]){r=!0;break}}if(!r)return n}return-1},slot_features:function(t){for(var e,i,n=this.start_end_dct,r=[],a=0,s=0,l=t.length;s<l;s++){e=t[s],i=e[0];var u=this.slots[i];if(u){if(e[1]<u.feature[1]||u.feature[2]<e[2])for(var c=this._get_draw_coords(u.feature),h=this._get_draw_coords(e),d=this.start_end_dct[u.slot],f=0;f<d.length;f++){var p=d[f];p[0]===c[0]&&p[1]===c[1]&&(d[f]=h)}a=Math.max(a,this.slots[i].slot)}else r.push(s)}for(var s=0,l=r.length;s<l;s++){e=t[r[s]],i=e[0];var m=this._get_draw_coords(e),v=this._find_slot(m);v>=0&&(void 0===n[v]&&(n[v]=[]),n[v].push(m),this.slots[i]=new o(v,e),a=Math.max(a,v))}return a+1}}),e.default={FeatureSlotter:s}},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=function(t,e){var i=t[0],n=t[1],r=e[0],a=e[1];return i<r?n<=r?1001:n<=a?1003:1002:i>a?1006:n<=a?1005:1004},o=function(t,e){var i=a(t,e);return 1001!==i&&1006!==i},s=function(t,e,i,n,r,a){void 0===a&&(a=4);var o,s=n-e,l=r-i,u=Math.floor(Math.sqrt(s*s+l*l)/a),c=s/u,h=l/u;for(o=0;o<u;o++,e+=c,i+=h)o%2==0&&t.fillRect(e,i,a,1)},l=function(t,e,i,n){var r=e-n/2,a=e+n/2,o=i-Math.sqrt(3*n/2);t.beginPath(),t.moveTo(r,o),t.lineTo(a,o),t.lineTo(e,i),t.lineTo(r,o),t.strokeStyle=this.fillStyle,t.fill(),t.stroke(),t.closePath()},u=function(t){this.default_val=t||1};u.prototype.gen_val=function(t){return this.default_val};var c=function(t){this.incomplete_features=t.incomplete_features,this.feature_mapper=t.feature_mapper},h=function(t,e,i,n,a){this.data=t,this.view_start=e,this.view_end=i,this.prefs=r.extend({},this.default_prefs,n),this.mode=a};h.prototype.default_prefs={},h.prototype.draw=function(t,e,i,n){},h.prototype.get_start_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,-.5)},h.prototype.get_end_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,.5)},h.prototype.get_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,0)},h.prototype._chrom_pos_to_draw_pos=function(t,e,i){return Math.floor(e*(Math.max(0,t-this.view_start)+i))};var d=function(t,e,i,n,r){h.call(this,t,e,i,n,r)};d.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Histogram",color:"#000",overflow_color:"#F66"},d.prototype.draw=function(t,e,i,n){var a=!1,o=this.prefs.min_value,s=this.prefs.max_value,l=s-o,u=i,c=this.view_start,h=this.mode,d=this.data;t.save();var f=Math.round(i+o/l*i);"Intensity"!==h&&(t.fillStyle="#aaa",t.fillRect(0,f,e,1)),t.beginPath();var p,m,v;v=d.length>1?r.map(d.slice(0,-1),function(t,e){return Math.ceil((d[e+1][0]-d[e][0])*n)}):[10];for(var g,_=this.prefs.block_color||this.prefs.color,y=parseInt(_.slice(1),16),b=(16711680&y)>>16,w=(65280&y)>>8,x=255&y,k=!1,C=!1,S=0,T=d.length;S<T;S++)if(t.fillStyle=t.strokeStyle=_,k=C=!1,g=v[S],p=Math.floor((d[S][0]-c-.5)*n),null!==(m=d[S][1])){if(m<o?(C=!0,m=o):m>s&&(k=!0,m=s),"Histogram"===h)m=Math.round(m/l*u),t.fillRect(p,f,g,-m);else if("Intensity"===h){var M=(m-o)/l,A=Math.round(b+(255-b)*(1-M)),E=Math.round(w+(255-w)*(1-M)),O=Math.round(x+(255-x)*(1-M));t.fillStyle="rgb("+A+","+E+","+O+")",t.fillRect(p,0,g,u)}else m=Math.round(u-(m-o)/l*u),a?t.lineTo(p,m):(a=!0,"Filled"===h?(t.moveTo(p,u),t.lineTo(p,m)):t.moveTo(p,m));if(t.fillStyle=this.prefs.overflow_color,k||C){var $;"Histogram"===h||"Intensity"===h?$=g:(p-=2,$=4),k&&t.fillRect(p,0,$,3),C&&t.fillRect(p,u-3,$,3)}t.fillStyle=_}else a&&"Filled"===h&&t.lineTo(p,u),a=!1;"Filled"===h?(a&&(t.lineTo(p,f),t.lineTo(0,f)),t.fill()):t.stroke(),t.restore()};var f=function(t){this.feature_positions={},this.slot_height=t,this.translation=0,this.y_translation=0};f.prototype.map_feature_data=function(t,e,i,n){this.feature_positions[e]||(this.feature_positions[e]=[]),this.feature_positions[e].push({data:t,x_start:i,x_end:n})},f.prototype.get_feature_data=function(t,e){var i,n=Math.floor((e-this.y_translation)/this.slot_height);if(!this.feature_positions[n])return null;t+=this.translation;for(var r=0;r<this.feature_positions[n].length;r++)if(i=this.feature_positions[n][r],t>=i.x_start&&t<=i.x_end)return i.data};var p=function(t,e,i,n,r,a,o){h.call(this,t,e,i,n,r),this.alpha_scaler=a||new u,this.height_scaler=o||new u,this.max_label_length=200};p.prototype.default_prefs={block_color:"#FFF",connector_color:"#FFF"},r.extend(p.prototype,{get_required_height:function(t,e){var i=this.get_row_height(),n=i,r=this.mode;return"no_detail"!==r&&"Squish"!==r&&"Pack"!==r||(i=t*n),i+this.get_top_padding(e)},get_top_padding:function(t){return 0},draw:function(t,e,i,n,r){var a=this.data,o=this.view_start,s=this.view_end;t.save(),t.fillStyle=this.prefs.block_color,t.textAlign="right";for(var l,u=this.get_row_height(),h=new f(u),d=[],p=0,m=a.length;p<m;p++){var v=a[p],g=v[0],_=v[1],y=v[2],b=r&&void 0!==r[g]?r[g].slot:null;("Dense"===this.mode||null!==b)&&_<s&&y>o&&(l=this.draw_element(t,this.mode,v,b,o,s,n,u,e),h.map_feature_data(v,b,l[0],l[1]),(_<o||y>s)&&d.push(v))}return t.restore(),h.y_translation=this.get_top_padding(e),new c({incomplete_features:d,feature_mapper:h})},draw_element:function(t,e,i,n,r,a,o,s,l){return[0,0]}});var m=function(t,e,i,n,r,a,o){p.call(this,t,e,i,n,r,a,o),this.draw_background_connector=!0,this.draw_individual_connectors=!1};r.extend(m.prototype,p.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"no_detail"===t?3:"Squish"===t?5:10},draw_element:function(t,e,i,n,r,a,o,s,l){var u,c=(i[0],i[1]),h=i[2],d=i[3],f=i[4],p=Math.floor(Math.max(0,(c-r-.5)*o)),m=Math.ceil(Math.min(l,Math.max(0,(h-r-.5)*o))),v=p,g=m,u=("Dense"===e?0:0+n)*s+this.get_top_padding(l),_=null,y=null,b=f&&"+"!==f&&"."!==f?this.prefs.reverse_strand_color:this.prefs.block_color,w=this.prefs.label_color;if(t.globalAlpha=this.alpha_scaler.gen_val(i),"Dense"===e&&(n=1),"no_detail"===e)t.fillStyle=b,t.fillRect(p,u+5,m-p,1);else{var x=i[5],k=i[6],C=i[7],S=!0;x&&k&&(_=Math.floor(Math.max(0,(x-r)*o)),y=Math.ceil(Math.min(l,Math.max(0,(k-r)*o))));var T,M;if("Squish"===e?(T=1,M=3,S=!1):(T=5,M=9),C){var A,E;"Squish"===e||"Dense"===e?(A=u+Math.floor(1.5)+1,E=1):f?(A=u,E=M):(A+=2.5,E=1),this.draw_background_connector&&("Squish"===e||"Dense"===e?t.fillStyle="#ccc":f?"+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand")):t.fillStyle="#ccc",t.fillRect(p,A,m-p,E));for(var O=0,$=C.length;O<$;O++){var D,j,P=C[O],R=Math.floor(Math.max(0,(P[0]-r-.5)*o)),N=Math.ceil(Math.min(l,Math.max((P[1]-r-.5)*o)));if(!(R>N)){if(t.fillStyle=b,t.fillRect(R,u+(M-T)/2+1,N-R,T),void 0!==_&&k>x&&!(R>y||N<_)){var I=Math.max(R,_),L=Math.min(N,y);t.fillRect(I,u+1,L-I,M),1===C.length&&"Pack"===e&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),I+14<L&&(I+=2,L-=2),t.fillRect(I,u+1,L-I,M))}this.draw_individual_connectors&&D&&this.draw_connector(t,D,j,R,N,u),D=R,j=N}}if("Pack"===e){t.globalAlpha=1,t.fillStyle="white";var H=this.height_scaler.gen_val(i),z=Math.ceil(M*H),q=Math.round((M-z)/2);1!==H&&(t.fillRect(p,A+1,m-p,q),t.fillRect(p,A+M-q+1,m-p,q))}}else t.fillStyle=b,t.fillRect(p,u+1,m-p,M),f&&S&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),t.fillRect(p,u+1,m-p,M));t.globalAlpha=1,d&&"Pack"===e&&c>r&&(t.fillStyle=w,0===r&&p-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,m+2,u+8,this.max_label_length),g+=t.measureText(d).width+2):(t.textAlign="right",t.fillText(d,p-2,u+8,this.max_label_length),v-=t.measureText(d).width+2))}return t.globalAlpha=1,[v,g]}});var v=function(t,e,i,n,r,a,o,s,l){p.call(this,t,e,i,n,r,a,o),this.ref_seq=s?s.data:null,this.base_color_fn=l};r.extend(v.prototype,p.prototype,{get_row_height:function(){var t,e=this.mode;return"Dense"===e?t=10:"Squish"===e?t=5:(t=10,this.prefs.show_insertions&&(t*=2)),t},_parse_cigar:function(t){var e="MIDNSHP=X",i=[[0,0]],n=i[0],a=0,o=r.map(t.match(/[0-9]+[MIDNSHP=X]/g),function(t){var r=parseInt(t.slice(0,-1),10),o=t.slice(-1);return"N"===o?0!==n[1]&&(n=[a+r,a+r],i.push(n)):-1==="ISHP".indexOf(o)&&(n[1]+=r,a+=r),[e.indexOf(o),r]});return{blocks:i,cigar:o}},draw_read:function(t,e,i,n,r,s,u,c,h,d){var f=function(t){return Math.floor(Math.max(0,(t-r-.5)*i))};t.textAlign="center";var p,m,v=[r,s],g=0,_=0,y=Math.round(i/2),b=t.canvas.manager.char_width_px,w="+"===h?this.prefs.detail_block_color:this.prefs.reverse_strand_color,k="Pack"===e,C=k?9:3,S=n+1,T=new x(t,C,i,e),M=[],A=[],E=this._parse_cigar(c);c=E.cigar,M=E.blocks;for(var O=0;O<M.length;O++){var $=M[O];o([u+$[0],u+$[1]],v)&&(p=f(u+$[0]),m=f(u+$[1]),p===m&&(m+=1),t.fillStyle=w,t.fillRect(p,S,m-p,C))}for(var D=0,j=c.length;D<j;D++){var P=c[D],R="MIDNSHP=X"[P[0]],N=P[1],I=u+g;if(p=f(I),m=f(I+N),o([I,I+N],v))switch(p===m&&(m+=1),R){case"H":case"S":case"P":break;case"M":g+=N;break;case"=":case"X":var L="";"X"===R?L=d.slice(_,_+N):this.ref_seq&&(L=this.ref_seq.slice(Math.max(0,I-r),Math.min(I-r+N,s-r)));for(var H=Math.max(I,r),z=0;z<L.length;z++)if(L&&!this.prefs.show_differences||"X"===R){var q=Math.floor(Math.max(0,(H+z-r)*i));t.fillStyle=this.base_color_fn(L[z]),k&&i>b?t.fillText(L[z],q,n+9):i>.05&&t.fillRect(q-y,S,Math.max(1,Math.round(i)),C)}"X"===R&&(_+=N),g+=N;break;case"N":t.fillStyle="#ccc",t.fillRect(p,S+(C-1)/2,m-p,1),g+=N;break;case"D":T.draw_deletion(p,S,N),g+=N;break;case"I":var F=p-y;if(o([I,I+N],v)){var B=d.slice(_,_+N);if(this.prefs.show_insertions){var V=p-(m-p)/2;if(("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b){switch(t.fillStyle="yellow",t.fillRect(V-y,n-9,m-p,9),A[A.length]={type:"triangle",data:[F,n+4,5]},t.fillStyle="#ccc",a([I,I+N],v)){case 1003:B=B.slice(r-I);break;case 1004:B=B.slice(0,I-s);break;case 1005:break;case 1002:B=B.slice(r-I,I-s)}for(var z=0,U=B.length;z<U;z++){var q=Math.floor(Math.max(0,(I+z-r)*i));t.fillText(B[z],q-(m-p)/2,n)}}else t.fillStyle="yellow",t.fillRect(V,n+("Dense"!==this.mode?2:5),m-p,"Dense"!==e?3:9)}else("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b&&A.push({type:"text",data:[B.length,F,n+9]})}_+=N}else g=function(t,e,i){return-1!=="M=NXD".indexOf(e)&&(t+=i),t}(g,R,N),_=function(t,e,i){return-1!=="IX".indexOf(e)&&(t+=i),t}(_,R,N)}t.fillStyle="yellow";for(var W,G,X,O=0;O<A.length;O++)W=A[O],G=W.type,X=W.data,"text"===G?(t.save(),t.font="bold "+t.font,t.fillText(X[0],X[1],X[2]),t.restore()):"triangle"===G&&l(t,X[0],X[1],X[2])},draw_element:function(t,e,i,n,r,a,o,l,u){var c=(i[0],i[1]),h=i[2],d=i[3],f=Math.floor(Math.max(-.5*o,(c-r-.5)*o)),p=Math.ceil(Math.min(u,Math.max(0,(h-r-.5)*o))),m=("Dense"===e?0:0+n)*l,v="Pack"===e?9:3;this.prefs.label_color;if(i[5]instanceof Array){var g=!0;i[4][1]>=r&&i[4][0]<=a&&i[4][2]?this.draw_read(t,e,o,m,r,a,i[4][0],i[4][2],i[4][3],i[4][4]):g=!1,i[5][1]>=r&&i[5][0]<=a&&i[5][2]?this.draw_read(t,e,o,m,r,a,i[5][0],i[5][2],i[5][3],i[5][4]):g=!1;var _=Math.ceil(Math.min(u,Math.max(-.5*o,(i[4][1]-r-.5)*o))),y=Math.floor(Math.max(-.5*o,(i[5][0]-r-.5)*o));if(g&&y>_){t.fillStyle="#ccc";var b=m+1+(v-1)/2;s(t,_,b,y,b)}}else this.draw_read(t,e,o,m,r,a,c,i[4],i[5],i[6]);return"Pack"===e&&c>=r&&"."!==d&&(t.fillStyle=this.prefs.label_color,0===r&&f-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,p+2,m+9,this.max_label_length)):(t.textAlign="right",t.fillText(d,f-2,m+9,this.max_label_length))),[0,0]}});var g=function(t,e,i,n,r,a,o){m.call(this,t,e,i,n,r,a,o),this.longest_feature_length=this.calculate_longest_feature_length(),this.draw_background_connector=!1,this.draw_individual_connectors=!0};r.extend(g.prototype,p.prototype,m.prototype,{calculate_longest_feature_length:function(){for(var t=0,e=0,i=this.data.length;e<i;e++){var n=this.data[e],r=n[1],a=n[2];t=Math.max(t,a-r)}return t},get_top_padding:function(t){var e=this.view_end-this.view_start,i=t/e;return Math.min(128,Math.ceil(this.longest_feature_length/2*i))},draw_connector:function(t,e,i,n,r,a){var o=(i+n)/2,s=n-o;Math.PI;s>0&&(t.beginPath(),t.arc(o,a,n-o,Math.PI,0),t.stroke())}});var _=function(t,e){Array.isArray(t)?this.rgb=t:6==t.length?this.rgb=t.match(/.{2}/g).map(function(t){return parseInt(t,16)}):7==t.length?this.rgb=t.substring(1,7).match(/.{2}/g).map(function(t){return parseInt(t,16)}):this.rgb=t.split("").map(function(t){return parseInt(t+t,16)}),this.alpha="number"==typeof e?e:1};_.prototype={eval:function(){return this},toCSS:function(){return this.alpha<1?"rgba("+this.rgb.map(function(t){return Math.round(t)}).concat(this.alpha).join(", ")+")":"#"+this.rgb.map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},toHSL:function(){var t,e,i=this.rgb[0]/255,n=this.rgb[1]/255,r=this.rgb[2]/255,a=this.alpha,o=Math.max(i,n,r),s=Math.min(i,n,r),l=(o+s)/2,u=o-s;if(o===s)t=e=0;else{switch(e=l>.5?u/(2-o-s):u/(o+s),o){case i:t=(n-r)/u+(n<r?6:0);break;case n:t=(r-i)/u+2;break;case r:t=(i-n)/u+4}t/=6}return{h:360*t,s:e,l:l,a:a}},toARGB:function(){return"#"+[Math.round(255*this.alpha)].concat(this.rgb).map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},mix:function(t,e){var i=this,n=e,r=2*n-1,a=i.toHSL().a-t.toHSL().a,o=((r*a==-1?r:(r+a)/(1+r*a))+1)/2,s=1-o,l=[i.rgb[0]*o+t.rgb[0]*s,i.rgb[1]*o+t.rgb[1]*s,i.rgb[2]*o+t.rgb[2]*s],u=i.alpha*n+t.alpha*(1-n);return new _(l,u)}};var y=function(t,e,i,n){this.start_color=new _(t),this.end_color=new _(e),this.start_value=i,this.end_value=n,this.value_range=n-i};y.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t=(t-this.start_value)/this.value_range,this.start_color.mix(this.end_color,1-t).toCSS()};var b=function(t,e,i,n,r){this.positive_ramp=new y(e,i,0,r),this.negative_ramp=new y(e,t,0,-n),this.start_value=n,this.end_value=r};b.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t>=0?this.positive_ramp.map_value(t):this.negative_ramp.map_value(-t)};var w=function(t,e,i,n,r){h.call(this,t,e,i,n,r);var a,o;if(void 0===this.prefs.min_value){var s=1/0;for(a=0,o=this.data.length;a<o;a++)s=Math.min(s,this.data[a][6]);this.prefs.min_value=s}if(void 0===this.prefs.max_value){var l=-1/0;for(a=0,o=this.data.length;a<o;a++)l=Math.max(l,this.data[a][6]);this.prefs.max_value=l}};w.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Heatmap",pos_color:"#FF8C00",neg_color:"#4169E1"},w.prototype.draw=function(t,e,i,n){var r,a,o,s,l,u,c=this.prefs.min_value,h=this.prefs.max_value,d=this.view_start,f=(this.mode,this.data),p=1/Math.sqrt(2),m=new b(this.prefs.neg_color,"#FFFFFF",this.prefs.pos_color,c,h),v=function(t){return(t-d)*n};t.save(),t.rotate(-45*Math.PI/180),t.scale(p,p);for(var g=0,_=f.length;g<_;g++)r=f[g],a=v(r[1]),o=v(r[2]),s=v(r[4]),l=v(r[5]),u=r[6],t.fillStyle=m.map_value(u),t.fillRect(a,s,o-a,l-s);t.restore()};var x=function(t,e,i,n){this.ctx=t,this.row_height=e,this.px_per_base=i,this.draw_details=("Pack"===n||"Auto"===n)&&i>=t.canvas.manager.char_width_px,this.delete_details_thickness=.2};r.extend(x.prototype,{draw_deletion:function(t,e,i){this.ctx.fillStyle="black";var n=(this.draw_details?this.delete_details_thickness:1)*this.row_height;e+=.5*(this.row_height-n),this.ctx.fillRect(t,e,i*this.px_per_base,n)}});var k=function(t,e,i,n,r,a){h.call(this,t,e,i,n,r),this.base_color_fn=a,this.divider_height=1};r.extend(k.prototype,h.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"Squish"===t?5:10},get_required_height:function(t){var e=this.prefs.summary_height;return t>1&&this.prefs.show_sample_data&&(e+=this.divider_height+t*this.get_row_height()),e},draw:function(t,e,i,n){t.save();var a,o,s,l,u,c,h,d,f,p,m,v=function(t,e){var i=t.length,n=e.length,r=0,a=1,o=null;return"-"===e?(o="deletion",a=t.length):0===t.indexOf(e)&&i>n?(o="deletion",a=i-n,r=n):0===e.indexOf(t)&&i<n&&(o="insertion",a=n-i,r=n),null!==o?{type:o,start:r,len:a}:{}},g=Math.max(1,Math.floor(n)),_=this.data.length?this.data[0][7].split(",").length:0,y="Squish"===this.mode?5:10,b=n<.1?y:"Squish"===this.mode?3:9,w=!0,k=new x(t,y,n,this.mode);1===_&&(y=b=n<t.canvas.manager.char_width_px?this.prefs.summary_height:y,k.row_height=y,w=!1),this.prefs.show_sample_data&&w&&(t.fillStyle="#F3F3F3",t.globalAlpha=1,t.fillRect(0,this.prefs.summary_height-this.divider_height,e,this.divider_height)),t.textAlign="center";for(var C=0;C<this.data.length;C++)if(a=this.data[C],o=a[1],s=a[3],l=[a[4].split(",")],u=a[7].split(","),c=a.slice(8),l=r.map(r.flatten(l),function(t){var e={type:"snp",value:t,start:0},i=v(s,t);return r.extend(e,i)}),!(o<this.view_start||o>this.view_end)){if(w)for(t.fillStyle="#999999",t.globalAlpha=1,m=0;m<l.length;m++)for(d=this.get_start_draw_pos(o+l[m].start,n),t.fillRect(d,0,g,this.prefs.summary_height),f=this.prefs.summary_height,m=0;m<l.length;m++){t.fillStyle="deletion"===l[m].type?"black":this.base_color_fn(l[m].value);var S=c/u.length,T=Math.ceil(this.prefs.summary_height*S);t.fillRect(d,f-T,g,T),f-=T}if(this.prefs.show_sample_data)for(f=w?this.prefs.summary_height+this.divider_height:0,m=0;m<u.length;m++,f+=y)if(p=u[m]?u[m].split(/\/|\|/):["0","0"],h=null,p[0]===p[1]?"."===p[0]||"0"!==p[0]&&(h=l[parseInt(p[0],10)-1],t.globalAlpha=1):(h="0"!==p[0]?p[0]:p[1],h=l[parseInt(h,10)-1],t.globalAlpha=.5),h)if(d=this.get_start_draw_pos(o+h.start,n),"snp"===h.type){var M=h.value;t.fillStyle=this.base_color_fn(M),k.draw_details?t.fillText(M,this.get_draw_pos(o,n),f+y):t.fillRect(d,f+1,g,b)}else"deletion"===h.type&&k.draw_deletion(d,f+1,h.len)}t.restore()}}),e.default={Scaler:u,LinePainter:d,LinkedFeaturePainter:m,ReadPainter:v,ArcLinkedFeaturePainter:g,DiagonalHeatmapPainter:w,VariantPainter:k}},function(t,e,i){"use strict";(function(t){Object.defineProperty(e,"__esModule",{value:!0});var n=i(3),r=function(t){return t&&t.__esModule?t:{default:t}}(n),a=i(1),o=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=o.extend,l=function(t){this.manager=null,this.name=t.name,this.index=t.index,this.tool_id=t.tool_id,this.tool_exp_name=t.tool_exp_name};s(l.prototype,{to_dict:function(){return{name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name}}});var u=function(e,i,n){return t("<a/>").attr("href","javascript:void(0);").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(n)},c=function(e){l.call(this,e),this.low="low"in e?e.low:-Number.MAX_VALUE,this.high="high"in e?e.high:Number.MAX_VALUE,this.min="min"in e?e.min:Number.MAX_VALUE,this.max="max"in e?e.max:-Number.MAX_VALUE,this.container=null,this.slider=null,this.slider_label=null;var i=this;i.parent_div=t("<div/>").addClass("filter-row slider-row");var n=t("<div/>").addClass("elt-label").appendTo(i.parent_div),r=(t("<span/>").addClass("slider-name").text(i.name+"  ").appendTo(n),t("<span/>").text(this.low+"-"+this.high)),a=t("<span/>").addClass("slider-value").appendTo(n).append("[").append(r).append("]");i.values_span=r;var o=t("<div/>").addClass("slider").appendTo(i.parent_div);i.control_element=t("<div/>").attr("id",i.name+"-filter-control").appendTo(o),i.control_element.slider({range:!0,min:this.min,max:this.max,step:this.get_slider_step(this.min,this.max),values:[this.low,this.high],slide:function(t,e){i.slide(t,e)},change:function(t,e){i.control_element.slider("option","slide").call(i.control_element,t,e)}}),i.slider=i.control_element,i.slider_label=r,function(e,i,n){e.click(function(){var e=i.text(),r=parseFloat(n.slider("option","max")),a=r<=1?4:r<=1e6?r.toString().length:6,o=!1,s=t(this).parents(".slider-row");s.addClass("input"),n.slider("option","values")&&(a=2*a+1,o=!0),i.text(""),t("<input type='text'/>").attr("size",a).attr("maxlength",a).attr("value",e).appendTo(i).focus().select().click(function(t){t.stopPropagation()}).blur(function(){t(this).remove(),i.text(e),s.removeClass("input")}).keyup(function(e){if(27===e.keyCode)t(this).trigger("blur");else if(13===e.keyCode){var i=n.slider("option","min"),r=n.slider("option","max"),a=function(t){return isNaN(t)||t>r||t<i},l=t(this).val();if(o){if(l=l.split("-"),l=[parseFloat(l[0]),parseFloat(l[1])],a(l[0])||a(l[1]))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this)}else if(l=parseFloat(l),a(l))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this);n.slider(o?"values":"value",l),s.removeClass("input")}})})}(a,r,i.control_element);var s=t("<div/>").addClass("display-controls").appendTo(i.parent_div);this.transparency_icon=u("Use filter for data transparency","layer-transparent",function(){i.manager.alpha_filter!==i?(i.manager.alpha_filter=i,i.manager.parent_div.find(".layer-transparent").removeClass("active").hide(),i.transparency_icon.addClass("active").show()):(i.manager.alpha_filter=null,i.transparency_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(s).hide(),this.height_icon=u("Use filter for data 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i=e.values;this.values_span.text(i[0]+"-"+i[1]),this.low=i[0],this.high=i[1];var n=this;setTimeout(function(){i[0]===n.low&&i[1]===n.high&&n.manager.track.request_draw({force:!0,clear_after:!0})},25)},applies_to:function(t){return t.length>this.index},_keep_val:function(t){return isNaN(t)||t>=this.low&&t<=this.high},keep:function(t){if(!this.applies_to(t))return!0;var e=t[this.index];if(e instanceof Array){for(var i=!0,n=0;n<e.length;n++)if(!this._keep_val(e[n])){i=!1;break}return i}return this._keep_val(t[this.index])},update_attrs:function(t){var e=!1;if(!this.applies_to(t))return e;var i=t[this.index];i instanceof Array||(i=[i]);for(var n=0;n<i.length;n++){var r=i[n];r<this.min&&(this.min=Math.floor(r),e=!0),r>this.max&&(this.max=Math.ceil(r),e=!0)}return e},update_ui_elt:function(){this.min<this.max?this.parent_div.show():this.parent_div.hide();var t=this.slider.slider("option","min"),e=this.slider.slider("option","max");(this.min<t||this.max>e)&&(this.slider.slider("option","min",this.min),this.slider.slider("option","max",this.max),this.slider.slider("option","step",this.get_slider_step(this.min,this.max)),this.slider.slider("option","values",[this.min,this.max]))}});var h=function(e,i){if(this.track=e,this.alpha_filter=null,this.height_filter=null,this.filters=[],this.parent_div=t("<div/>").addClass("filters").hide(),this.parent_div.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).bind("keydown",function(t){t.stopPropagation()}),i&&"filters"in i){for(var n,r=("alpha_filter"in i?i.alpha_filter:null),a=("height_filter"in i?i.height_filter:null),o=i.filters,s=0;s<o.length;s++)"number"===o[s].type?(n=new c(o[s]),this.add_filter(n),n.name===r&&(this.alpha_filter=n,n.transparency_icon.addClass("active").show()),n.name===a&&(this.height_filter=n,n.height_icon.addClass("active").show())):console.log("ERROR: unsupported filter: ",name,type);"visible"in i&&i.visible&&this.parent_div.show()}if(0!==this.filters.length){var l=t("<div/>").addClass("param-row").appendTo(this.parent_div),u=this;t("<input type='submit'/>").attr("value","Run on complete dataset").appendTo(l).click(function(){u.run_on_dataset()})}};s(h.prototype,{show:function(){this.parent_div.show()},hide:function(){this.parent_div.hide()},toggle:function(){this.parent_div.toggle()},visible:function(){return this.parent_div.is(":visible")},to_dict:function(){for(var t,e={},i=[],n=0;n<this.filters.length;n++)t=this.filters[n],i.push(t.to_dict());return e.filters=i,e.alpha_filter=this.alpha_filter?this.alpha_filter.name:null,e.height_filter=this.height_filter?this.height_filter.name:null,e.visible=this.parent_div.is(":visible"),e},copy:function(t){for(var e=new h(t),i=0;i<this.filters.length;i++)e.add_filter(this.filters[i].copy());return e},add_filter:function(t){t.manager=this,this.parent_div.append(t.parent_div),this.filters.push(t)},remove_all:function(){this.filters=[],this.parent_div.children().remove()},init_filters:function(){for(var t=0;t<this.filters.length;t++){this.filters[t].update_ui_elt()}},clear_filters:function(){for(var t=0;t<this.filters.length;t++){var e=this.filters[t];e.slider.slider("option","values",[e.min,e.max])}this.alpha_filter=null,this.height_filter=null,this.parent_div.find(".icon-button").hide()},run_on_dataset:function(){for(var e,i,n=(function(t,e,i){return e in t||(t[e]=i),t[e]}),a={},o=0;o<this.filters.length;o++)e=this.filters[o],e.tool_id&&(e.min!==e.low&&(i=n(a,e.tool_id,[]),i[i.length]=e.tool_exp_name+" >= "+e.low),e.max!==e.high&&(i=n(a,e.tool_id,[]),i[i.length]=e.tool_exp_name+" <= "+e.high));var s=[];for(var l in a)s[s.length]=[l,a[l]];!function e(i,n){var a=n[0],o=a[0],s=a[1],l="("+s.join(") and (")+")",u={cond:l,input:i,target_dataset_id:i,tool_id:o};n=n.slice(1),t.getJSON(run_tool_url,u,function(t){t.error?Galaxy.modal.show({title:(0,r.default)("Filter Dataset"),body:"Error running tool "+o,buttons:{Close:Galaxy.modal.hide()}}):0===n.length?Galaxy.modal.show({title:(0,r.default)("Filtering Dataset"),body:"Filter(s) are running on the complete dataset. Outputs are in dataset's history.",buttons:{Close:Galaxy.modal.hide()}}):e(t.dataset_id,n)})}(this.track.dataset_id,s)}}),e.default={FiltersManager:h,NumberFilter:c}}).call(e,i(0))},function(t,e,i){"use strict";(function(t,n,r,a){function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var s=i(4),l=o(s),u=i(6),c=(o(u),i(38)),h=o(c),d=i(154),f=o(d),p=i(155),m=o(p),v=i(156),g=o(v),_=t.View.extend({initialize:function(t,e){this.app=t,this.inputs=e.inputs,this.parameters=new g.default,this.setElement(n("<div/>")),this.render()},render:function(){var t=this;this.$el.empty(),r.each(this.inputs,function(e){t.add(e)})},add:function(t){var e=a.extend(!0,{},t);switch(e.id=t.id=l.default.uid(),this.app.input_list[e.id]=e,e.type){case"conditional":this._addConditional(e);break;case"repeat":this._addRepeat(e);break;case"section":this._addSection(e);break;default:this._addRow(e)}},_addConditional:function(t){var e=this;t.test_param.id=t.id,this.app.model.get("sustain_conditionals")&&(t.test_param.disabled=!0);var i=this._addRow(t.test_param);i.model&&i.model.set("onchange",function(i){var n=e.app.data.matchCase(t,i);for(var r in t.cases){var a=t.cases[r],o=e.$("#"+t.id+"-section-"+r),s=!1;for(var l in a.inputs)if(!a.inputs[l].hidden){s=!0;break}r==n&&s?o.fadeIn("fast"):o.hide()}e.app.trigger("change")});for(var n in t.cases){var r=new _(this.app,{inputs:t.cases[n].inputs});this._append(r.$el.addClass("ui-form-section"),t.id+"-section-"+n)}i.trigger("change")},_addRepeat:function(t){function e(e){var r=t.id+"-section-"+n++,o=new _(i.app,{inputs:e});a.add({id:r,$el:o.$el,ondel:function(){a.del(r),i.app.trigger("change")}})}for(var i=this,n=0,a=new f.default.View({title:t.title||"Repeat",min:t.min,max:t.max,onnew:function(){e(t.inputs),i.app.trigger("change")}}),o=r.size(t.cache),s=0;s<Math.max(Math.max(o,t.min||0),t.default||0);s++)e(s<o?t.cache[s]:t.inputs);this.app.model.get("sustain_repeats")&&a.hideOptions();var l=new m.default(this.app,{label:t.title||t.name,help:t.help,field:a});this._append(l.$el,t.id)},_addSection:function(t){var e=new h.default.View({title:t.title||t.name,cls:"ui-portlet-section",collapsible:!0,collapsible_button:!0,collapsed:!t.expanded});e.append(new _(this.app,{inputs:t.inputs}).$el),e.append(n("<div/>").addClass("ui-form-info").html(t.help)),this.app.on("expand",function(t){e.$("#"+t).length>0&&e.expand()}),this._append(e.$el,t.id)},_addRow:function(t){var e=this,i=t.id;t.onchange=t.onchange||function(){e.app.trigger("change",i)};var n=this.parameters.create(t);this.app.field_list[i]=n;var r=new m.default(this.app,{name:t.name,label:t.hide_label?"":t.label||t.name,value:t.value,text_value:t.text_value,collapsible_value:t.collapsible_value,collapsible_preview:t.collapsible_preview,help:t.help,argument:t.argument,disabled:t.disabled,color:t.color,style:t.style,backdrop:t.backdrop,hidden:t.hidden,fixed:t.fixed,field:n});return this.app.element_list[i]=r,this._append(r.$el,t.id),n},_append:function(t,e){this.$el.append(t.addClass("section-row").attr("id",e))}});e.default={View:_}}).call(e,i(2),i(0),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0}),e.View=void 0;var o=i(3),s=a(o),l=i(4),u=a(l),c=i(38),h=a(c),d=i(6),f=a(d),p=e.View=t.View.extend({initialize:function(t){this.list={},this.options=u.default.merge(t,{title:(0,s.default)("Repeat"),empty_text:"Not available.",max:null,min:null}),this.button_new=new f.default.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title,tooltip:"Add new "+this.options.title+" block",cls:"ui-button-icon ui-clear-float form-repeat-add",onclick:function(){t.onnew&&t.onnew()}}),this.setElement(n("<div/>").append(this.$list=n("<div/>")).append(n("<div/>").append(this.button_new.$el)))},size:function(){return r.size(this.list)},add:function(t){if(!t.id||this.list[t.id])return void Galaxy.emit.debug("form-repeat::add()","Duplicate or invalid repeat block id.");var e=new f.default.ButtonIcon({icon:"fa-trash-o",tooltip:(0,s.default)("Delete this repeat block"),cls:"ui-button-icon-plain form-repeat-delete",onclick:function(){t.ondel&&t.ondel()}}),i=new h.default.View({id:t.id,title:(0,s.default)("placeholder"),cls:t.cls||"ui-portlet-repeat",operations:{button_delete:e}});i.append(t.$el),i.$el.addClass("section-row").hide(),this.list[t.id]=i,this.$list.append(i.$el.fadeIn("fast")),this.options.max>0&&this.size()>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(t){if(!this.list[t])return void Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.");this.$list.find("#"+t).remove(),delete this.list[t],this.button_new.enable(),this._refresh()},delAll:function(){for(var t in this.list)this.del(t)},hideOptions:function(){this.button_new.$el.hide(),r.each(this.list,function(t){t.hideOperation("button_delete")}),r.isEmpty(this.list)&&this.$el.append(n("<div/>").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),i[this.size()>this.options.min?"showOperation":"hideOperation"]("button_delete")}}});e.default={View:p}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,i,n){Object.defineProperty(e,"__esModule",{value:!0}),e.default=t.View.extend({initialize:function(e,i){this.app=e,this.app_options=e.model?e.model.attributes:{},this.field=i&&i.field||new t.View,this.model=i&&i.model||new t.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up",always_refresh:this.app_options.always_refresh}).set(i),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var n=this.model.get("collapsible_value");this.field.collapsed=void 0!==n&&JSON.stringify(this.model.get("value"))==JSON.stringify(n),this.listenTo(this.model,"change",this.render,this),this.render();var r=this;this.$collapsible.on("click",function(){r.field.collapsed=!r.field.collapsed,e.trigger&&e.trigger("change"),r.render()}),this.field.model&&!this.model.get("always_refresh")&&this.listenTo(this.field.model,"change:value",function(){r.reset()})},backdrop:function(){this.model.set("backdrop",!0)},error:function(t){this.model.set("error_text",t)},reset:function(){!this.model.get("fixed")&&this.model.set("error_text",null)},render:function(){i(".tooltip").hide();var t=this.model.get("help",""),e=this.model.get("argument");e&&-1==t.indexOf("("+e+")")&&(t+=" ("+e+")"),this.$info.html(t),this.$el[this.model.get("hidden")?"hide":"show"](),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")||this.model.get("disabled")?"show":"hide"]().html(n.escape(this.model.get("text_value")));var r=this.model.get("error_text");if(this.$error[r?"show":"hide"](),this.$el[r?"addClass":"removeClass"]("ui-error"),this.$error_text.html(r),this.$backdrop[this.model.get("backdrop")?"show":"hide"](),this.field.collapsed||this.model.get("disabled")?this.$field.hide():this.$field.show(),this.field.model&&this.field.model.set({color:this.model.get("color"),style:this.model.get("style")}),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var a=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+a)).attr("data-original-title",this.model.get("text_"+a)).tooltip({placement:"bottom"})}},_template:function(){return i("<div/>").addClass("ui-form-element").append(i("<div/>").addClass("ui-form-error ui-error").append(i("<span/>").addClass("fa fa-arrow-down")).append(i("<span/>").addClass("ui-form-error-text"))).append(i("<div/>").addClass("ui-form-title").append(i("<div/>").addClass("ui-form-collapsible").append(i("<i/>").addClass("ui-form-collapsible-icon")).append(i("<span/>").addClass("ui-form-collapsible-text"))).append(i("<span/>").addClass("ui-form-title-text"))).append(i("<div/>").addClass("ui-form-field").append(i("<span/>").addClass("ui-form-info")).append(i("<div/>").addClass("ui-form-backdrop"))).append(i("<div/>").addClass("ui-form-preview"))}})}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(4),s=a(o),l=i(6),u=a(l),c=i(157),h=a(c),d=i(158),f=a(d),p=i(159),m=a(p),v=i(160),g=a(v),_=i(162),y=a(_);e.default=t.Model.extend({types:{text:"_fieldText",password:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider",float:"_fieldSlider",boolean:"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp",upload:"_fieldUpload",genomespacefile:"_fieldGenomeSpace"},create:function(t){var e=this.types[t.type],i="function"==typeof this[e]?this[e].call(this,t):null;return i||(i=t.options?this._fieldSelect(t):this._fieldText(t),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+t.type+").")),void 0===t.value&&(t.value=null),i.value(t.value),i},_fieldData:function(t){return new h.default.View({id:"field-"+t.id,extensions:t.extensions,optional:t.optional,multiple:t.multiple,type:t.type,flavor:t.flavor,data:t.options,onchange:t.onchange})},_fieldSelect:function(t){if(t.is_workflow)return this._fieldText(t);"data_column"==t.type&&(t.error_text="Missing columns in referenced dataset.");var e=t.data;e||(e=[],n.each(t.options,function(t){e.push({label:t[0],value:t[1]})}));var i=u.default.Select;switch(t.display){case"checkboxes":i=u.default.Checkbox;break;case"radio":i=u.default.Radio;break;case"radiobutton":i=u.default.RadioButton}return new i.View({id:"field-"+t.id,data:e,error_text:t.error_text||"No options available",readonly:t.readonly,multiple:t.multiple,optional:t.optional,onchange:t.onchange,individual:t.individual,searchable:"workflow"!==t.flavor})},_fieldDrilldown:function(t){return t.is_workflow?this._fieldText(t):new u.default.Drilldown.View({id:"field-"+t.id,data:t.options,display:t.display,optional:t.optional,onchange:t.onchange})},_fieldText:function(t){if(t.options&&t.data)if(t.area=t.multiple,s.default.isEmpty(t.value))t.value=null;else if(r.isArray(t.value)){var e="";for(var i in t.value){if(e+=String(t.value[i]),!t.multiple)break;e+="\n"}t.value=e}return new u.default.Input({id:"field-"+t.id,type:t.type,area:t.area,readonly:t.readonly,placeholder:t.placeholder,datalist:t.datalist,onchange:t.onchange})},_fieldSlider:function(t){return new u.default.Slider.View({id:"field-"+t.id,precise:"float"==t.type,is_workflow:t.is_workflow,min:t.min,max:t.max,onchange:t.onchange})},_fieldHidden:function(t){return new u.default.Hidden({id:"field-"+t.id,info:t.info})},_fieldBoolean:function(t){return new u.default.RadioButton.View({id:"field-"+t.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:t.onchange})},_fieldColor:function(t){return new y.default({id:"field-"+t.id,onchange:t.onchange})},_fieldLibrary:function(t){return new f.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldFtp:function(t){return new m.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldGenomeSpace:function(t){var e=this;return new g.default.View({id:"field-"+t.id,onchange:function(){e.app.trigger("change")}})},_fieldUpload:function(t){return new u.default.Upload({id:"field-"+t.id,onchange:t.onchange})}})}).call(e,i(2),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(4),u=a(l),c=i(6),h=a(c),d=i(82),f=a(d),p={DISABLED:"disabled",ENABLED:"enabled",LINKED:"linked"},m={data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.LINKED},{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.LINKED}],data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.DISABLED},{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collections"),multiple:!0,batch:p.DISABLED}],data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED}],workflow_data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED}],workflow_data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.DISABLED}],workflow_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED}],module_data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.ENABLED}],module_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED},{src:"hdca",icon:"fa-folder",tooltip:(0,s.default)("Multiple collections"),multiple:!0,batch:p.ENABLED}]},v=t.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new t.Model({src_labels:{hda:"dataset",hdca:"dataset collection"},pagelimit:100,statustimer:1e3}).set(e),this.setElement(n("<div/>").addClass("ui-select-content")),this.button_product=new h.default.RadioButton.View({value:"false",data:[{icon:"fa fa-chain",value:"false",tooltip:"Linked inputs will be run in matched order with other datasets e.g. use this for matching forward and reverse reads."},{icon:"fa fa-chain-broken",value:"true",tooltip:"Unlinked dataset inputs will be run against *all* other inputs."}]});var r=n("<div/>").addClass("ui-form-info").append(n("<i/>").addClass("fa fa-sitemap")).append(n("<span/>").html("This is a batch mode input field. Separate jobs will be triggered for each dataset selection."));this.$batch={linked:r.clone(),enabled:r.clone().append(n("<div/>").append(n("<div/>").addClass("ui-form-title").html("Batch options:")).append(this.button_product.$el)).append(n("<div/>").css("clear","both"))},this.$el.on("dragenter",function(t){this.lastenter=t.target,i.$el.addClass("ui-dragover")}).on("dragover",function(t){t.preventDefault()}).on("dragleave",function(t){this.lastenter===t.target&&i.$el.removeClass("ui-dragover")}).on("drop",function(t){i._handleDrop(t)}),this.history={},this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:current",this._changeCurrent,this),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:type change:optional change:multiple change:extensions",this._changeType,this),this.render(),this.on("change",function(){e.onchange&&e.onchange(i.value())})},render:function(){this._changeType(),this._changeValue(),this._changeWait()},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},update:function(t){this.model.set("data",t)},value:function(t){void 0!==t&&this.model.set("value",t);var e=this.model.get("current");if(this.config[e]){var i=this.fields[e].value();if(null!==i&&(i=n.isArray(i)?i:[i],i.length>0)){var r=this._batch({values:[]});for(var a in i){var o=this.history[i[a]+"_"+this.config[e].src];if(!o)return Galaxy.emit.debug("ui-select-content::value()","Requested details not found for '"+i[a]+"'."),null;r.values.push(o)}return r.values.sort(function(t,e){return t.hid-e.hid}),r}}else Galaxy.emit.debug("ui-select-content::value()","Invalid value/source '"+t+"'.");return null},_changeCurrent:function(){var t=this;r.each(this.fields,function(e,i){t.model.get("current")==i?(e.$el.show(),r.each(t.$batch,function(e,n){e[t.config[i].batch==n?"show":"hide"]()}),t.button_type.value(i)):e.$el.hide()})},_changeType:function(){var t=this,e=(this.model.get("flavor")?this.model.get("flavor")+"_":"")+String(this.model.get("type"))+(this.model.get("multiple")?"_multiple":"");m[e]?this.config=m[e]:(this.config=m.data,Galaxy.emit.debug("ui-select-content::_changeType()","Invalid configuration/type id '"+e+"'."));var i=t.model.get("data"),n=u.default.textify(this.model.get("extensions")),a=this.model.get("src_labels");this.fields=[],this.button_data=[],r.each(this.config,function(e,r){t.button_data.push({value:r,icon:e.icon,tooltip:e.tooltip}),t.fields.push(new f.default.View({optional:t.model.get("optional"),multiple:e.multiple,searchable:!e.multiple||i&&i[e.src]&&i[e.src].length>t.model.get("pagelimit"),individual:!0,error_text:"No "+(n?n+" ":"")+(a[e.src]||"content")+" available.",onchange:function(){t.trigger("change")}}))}),this.button_type=new h.default.RadioButton.View({value:this.model.get("current"),data:this.button_data,onchange:function(e){t.model.set("current",e),t.trigger("change")}}),this.$el.empty();var o=0;this.fields.length>1&&(this.$el.append(this.button_type.$el),o=Math.max(0,36*this.fields.length)+"px"),r.each(this.fields,function(e){t.$el.append(e.$el.css({"margin-left":o}))}),r.each(this.$batch,function(e,i){t.$el.append(e.css({"margin-left":o}))}),this.model.set("current",0),this._changeCurrent(),this._changeData()},_changeWait:function(){var t=this;r.each(this.fields,function(e){e[t.model.get("wait")?"wait":"unwait"]()})},_changeData:function(){var t=this.model.get("data"),e=this,i={};r.each(t,function(t,n){i[n]=[],r.each(t,function(t){i[n].push({hid:t.hid,keep:t.keep,label:t.hid+": "+t.name,value:t.id,tags:t.tags}),e.history[t.id+"_"+n]=t})}),r.each(this.config,function(t,n){i[t.src]&&e.fields[n].add(i[t.src],function(t,e){return e.hid-t.hid})})},_changeValue:function(){var t=this.model.get("value");if(t&&t.values&&t.values.length>0){var e=[];r.each(t.values,function(t){e.push(t.id)});for(var i=t.values[0].src,n=t.values.length>1,a=0;a<this.config.length;a++){var o=this.fields[a],s=this.config[a];if(s.src==i&&-1!==[n,!0].indexOf(s.multiple)){this.model.set("current",a),o.value(e);break}}}else r.each(this.fields,function(t){t.value(null)})},_handleDrop:function(t){try{var e=this.model.get("data"),i=this.model.get("current"),n=this.config[i],a=this.fields[i],o=JSON.parse(t.originalEvent.dataTransfer.getData("text"))[0],s=o.id,l="dataset"==o.history_content_type?"hda":"hdca",u={id:s,src:l};if(e&&r.findWhere(e[l],u)){if(n.src==l){var c=a.value();c&&n.multiple?-1==c.indexOf(s)&&c.push(s):c=s,a.value(c)}else this.model.set("value",{values:[u]}),this.model.trigger("change:value");this.trigger("change"),this._handleDropStatus("success")}else this._handleDropStatus("danger")}catch(t){this._handleDropStatus("danger")}t.preventDefault()},_handleDropStatus:function(t){var e=this;this.$el.removeClass("ui-dragover").addClass("ui-dragover-"+t),setTimeout(function(){e.$el.removeClass("ui-dragover-"+t)},this.model.get("statustimer"))},_batch:function(t){t.batch=!1;var e=this.model.get("current"),i=this.config[e];if("hdca"==i.src&&!i.multiple){var n=this.history[this.fields[e].value()+"_hdca"];n&&n.map_over_type&&(t.batch=!0)}return i.batch!=p.LINKED&&i.batch!=p.ENABLED||(t.batch=!0,i.batch==p.ENABLED&&"true"===this.button_product.value()&&(t.product=!0)),t}});e.default={View:v}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t){function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(4),a=(n(r),i(6)),o=n(a),s=i(88),l=(n(s),i(89)),u=n(l),c=t.Collection.extend({url:Galaxy.root+"api/libraries?deleted=false"}),h=t.Collection.extend({initialize:function(){var e=this;this.config=new t.Model({library_id:null}),this.config.on("change",function(){e.fetch({reset:!0})})},url:function(){return Galaxy.root+"api/libraries/"+this.config.get("library_id")+"/contents"}}),d=t.View.extend({initialize:function(t){var e=this;this.libraries=new c,this.datasets=new h,this.options=t,this.library_select=new o.default.Select.View({onchange:function(t){e.datasets.config.set("library_id",t)}}),this.dataset_list=new u.default.View({name:"dataset",optional:t.optional,multiple:t.multiple,onchange:function(){e.trigger("change")}}),this.libraries.on("reset",function(){var t=[];e.libraries.each(function(e){t.push({value:e.id,label:e.get("name")})}),e.library_select.update(t)}),this.datasets.on("reset",function(){var t=[];null!==e.library_select.text()&&e.datasets.each(function(e){"file"===e.get("type")&&t.push({value:e.id,label:e.get("name")})}),e.dataset_list.update(t)}),this.on("change",function(){t.onchange&&t.onchange(e.value())}),this.setElement(this._template()),this.$(".library-select").append(this.library_select.$el),this.$el.append(this.dataset_list.$el),this.libraries.fetch({reset:!0,success:function(){e.library_select.trigger("change"),void 0!==e.options.value&&e.value(e.options.value)}})},value:function(t){return this.dataset_list.value(t)},_template:function(){return'<div class="ui-select-library"><div class="library ui-margin-bottom"><span class="library-title">Select Library</span><span class="library-select"/></div></div>'}});e.default={View:d}}).call(e,i(2))},function(t,e,i){"use strict";(function(t){function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(4),a=n(r),o=i(89),s=n(o),l=t.View.extend({initialize:function(t){var e=this;this.ftpfile_list=new s.default.View({name:"file",optional:t.optional,multiple:t.multiple,onchange:function(){t.onchange&&t.onchange(e.value())}}),this.setElement(this.ftpfile_list.$el),a.default.get({url:Galaxy.root+"api/remote_files",success:function(t){var i=[];for(var n in t)i.push({value:t[n].path,label:t[n].path});e.ftpfile_list.update(i)}})},value:function(t){return this.ftpfile_list.value(t)}});e.default={View:l}}).call(e,i(2))},function(t,e,i){"use strict";(function(t){function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(3),a=n(r),o=i(4),s=(n(o),i(6)),l=n(s),u=i(161),c=n(u),h=t.View.extend({initialize:function(t){var e=this;this.browse_button=new l.default.ButtonIcon({title:(0,a.default)("Browse"),icon:"fa fa-sign-in",tooltip:(0,a.default)("Browse GenomeSpace"),onclick:function(){e.browseGenomeSpace()}}),this.filename_textbox=new l.default.Input,this.token_textbox=new 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t=l.splice(0,1)[0];o._tsFetch(t.zoom,t.chr,t.min,t.max,function(o){var s=i>0?0:3e8;t.fromRef&&(s=e);for(var c=0;c<o.length;++c){var u,h=o[c];if(u=void 0!=h.maxScore?h.maxScore:h.score,i>0){if(u>n)if(t.zoom<0){if(h.min>s)return r(h)}else h.max>s&&l.push({chr:t.chr,chrOrd:t.chrOrd,zoom:t.zoom-2,min:h.min,max:h.max,fromRef:t.fromRef})}else if(u>n)if(t.zoom<0){if(h.max<s)return r(h)}else h.min<s&&l.push({chr:t.chr,chrOrd:t.chrOrd,zoom:t.zoom-2,min:h.min,max:h.max,fromRef:t.fromRef})}a()})}i=i<0?-1:1;for(var o=this,s=this.chromsToIDs[t],l=[{chrOrd:0,chr:s,zoom:o.zoomLevels.length-4,min:0,max:3e8,fromRef:!0}],c=1;c<=this.maxID+1;++c){var u=(s+i*c)%(this.maxID+1);u<0&&(u+=this.maxID+1),l.push({chrOrd:c,chr:u,zoom:o.zoomLevels.length-1,min:0,max:3e8})}a()},l.prototype.getAutoSQL=function(t){if(!this.asOffset)return t(null);n.when(o(this.url,this.asOffset,2048)).then(function(e){for(var i=new Uint8Array(e),n="",r=0;r<i.length&&0!=i[r];++r)n+=String.fromCharCode(i[r]);var a=/(\w+)\s+(\w+)\s+("([^"]+)")?\s+\(\s*/,o=/([\w\[\]]+)\s+(\w+)\s*;\s*("([^"]+)")?\s*/g,s=a.exec(n);if(s){var l={declType:s[1],name:s[2],comment:s[4],fields:[]};n=n.substring(s[0]);for(var c=o.exec(n);null!=c;c=o.exec(n))l.fields.push({type:c[1],name:c[2],comment:c[4]});return t(l)}})},l.prototype.getExtraIndices=function(t){var e=this;if(this.version<4||0==this.extHeaderOffset||"bigbed"!=this.type)return t(null);this.data.slice(this.extHeaderOffset,64).fetch(function(i){if(!i)return t(null,"Couldn't fetch extension header");var n=new Uint8Array(i),r=new Int16Array(i),a=(new Int32Array(i),r[0],r[1]),o=s(n,4);if(0==a)return t(null);e.data.slice(o,20*a).fetch(function(i){if(!i)return t(null,"Couldn't fetch index info");for(var n=new Uint8Array(i),r=new Int16Array(i),o=(new Int32Array(i),[]),l=0;l<a;++l){var c=r[10*l],u=r[10*l+1],d=s(n,20*l+4),f=r[10*l+8],p=new h(e,c,u,d,f);o.push(p)}t(o)})})},h.prototype.lookup=function(t,e){var i=this;this.bbi.data.slice(this.offset,32).fetch(function(n){function r(n){i.bbi.data.slice(n,4+c*(u+h)).fetch(function(n){var o=new Uint8Array(n),l=new Uint16Array(n),c=(new Uint32Array(n),o[0]),d=l[1],f=4;if(0!=c){for(var p=0;p<d;++p){for(var m="",v=0;v<u;++v){var g=o[f++];0!=g&&(m+=String.fromCharCode(g))}if(m==t){var _=s(o,f),y=a(o,f+8);return i.bbi.getUnzoomedView().fetchFeatures(function(e,n,r,a){if(a&&a.length>i.field-3)return a[i.field-3]==t},[{offset:_,size:y}],e)}f+=h}return e([])}for(var b=null,p=0;p<d;++p){for(var m="",v=0;v<u;++v){var g=o[f++];0!=g&&(m+=String.fromCharCode(g))}var w=s(o,f);if(f+=8,t.localeCompare(m)<0&&b)return void r(b);b=w}r(b)})}var o=new Uint8Array(n),l=(new Int16Array(n),new Int32Array(n)),c=(l[0],l[1]),u=l[2],h=l[3];s(o,16);r(i.offset+32)})},{makeBwg:u}}.apply(e,r))&&(t.exports=a)}).call(e,i(0))},function(t,e,i){var n,r;n=[],void 0!==(r=function(){"use strict";function t(t,e){if("number"!=typeof t||"number"!=typeof e)throw"Bad range 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r}function n(){}function r(){}function a(t,e,i,n,r){return t[0]=_,e[0]=y,i[0]=b,n[0]=w,f}function o(t,e,i,n,r){if(0!=r){if(!t)throw"Undef src";if(!i)throw"Undef dest";0==e&&r==t.length?l(t,i,n):E?l(t.subarray(e,e+r),i,n):1==t.BYTES_PER_ELEMENT&&r>100?l(new Uint8Array(t.buffer,t.byteOffset+e,r),i,n):s(t,e,i,n,r)}}function s(t,e,i,n,r){for(var a=0;a<r;++a)i[n+a]=t[e+a]}function l(t,e,i){e.set(t,i)}function c(e,i,n,r){e=i?n?new Uint8Array(e,i,n):new Uint8Array(e,i,e.byteLength-i):new Uint8Array(e);var a=new t;a.inflateInit(u,!0),a.next_in=e,a.next_in_index=0,a.avail_in=e.length;for(var s=[],l=0;;){var c=new Uint8Array(32e3);a.next_out=c,a.next_out_index=0,a.avail_out=c.length;var h=a.inflate(d);if(h!=f&&h!=p&&h!=m)throw a.msg;if(0!=a.avail_out){var v=new Uint8Array(c.length-a.avail_out);o(c,0,v,0,c.length-a.avail_out),c=v}if(s.push(c),l+=c.length,h==p||h==m)break}if(r&&(r[0]=(i||0)+a.next_in_index),1==s.length)return s[0].buffer;for(var g=new Uint8Array(l),_=0,y=0;y<s.length;++y){var b=s[y];o(b,0,g,_,b.length),_+=b.length}return g.buffer}var u=15,h=1440,d=0,f=0,p=1,m=-5,v=[0,1,3,7,15,31,63,127,255,511,1023,2047,4095,8191,16383,32767,65535],g=0,_=9,y=5,b=[96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,192,80,7,10,0,8,96,0,8,32,0,9,160,0,8,0,0,8,128,0,8,64,0,9,224,80,7,6,0,8,88,0,8,24,0,9,144,83,7,59,0,8,120,0,8,56,0,9,208,81,7,17,0,8,104,0,8,40,0,9,176,0,8,8,0,8,136,0,8,72,0,9,240,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,200,81,7,13,0,8,100,0,8,36,0,9,168,0,8,4,0,8,132,0,8,68,0,9,232,80,7,8,0,8,92,0,8,28,0,9,152,84,7,83,0,8,124,0,8,60,0,9,216,82,7,23,0,8,108,0,8,44,0,9,184,0,8,12,0,8,140,0,8,76,0,9,248,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,196,81,7,11,0,8,98,0,8,34,0,9,164,0,8,2,0,8,130,0,8,66,0,9,228,80,7,7,0,8,90,0,8,26,0,9,148,84,7,67,0,8,122,0,8,58,0,9,212,82,7,19,0,8,106,0,8,42,0,9,180,0,8,10,0,8,138,0,8,74,0,9,244,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,204,81,7,15,0,8,102,0,8,38,0,9,172,0,8,6,0,8,134,0,8,70,0,9,236,80,7,9,0,8,94,0,8,30,0,9,156,84,7,99,0,8,126,0,8,62,0,9,220,82,7,27,0,8,110,0,8,46,0,9,188,0,8,14,0,8,142,0,8,78,0,9,252,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,194,80,7,10,0,8,97,0,8,33,0,9,162,0,8,1,0,8,129,0,8,65,0,9,226,80,7,6,0,8,89,0,8,25,0,9,146,83,7,59,0,8,121,0,8,57,0,9,210,81,7,17,0,8,105,0,8,41,0,9,178,0,8,9,0,8,137,0,8,73,0,9,242,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,202,81,7,13,0,8,101,0,8,37,0,9,170,0,8,5,0,8,133,0,8,69,0,9,234,80,7,8,0,8,93,0,8,29,0,9,154,84,7,83,0,8,125,0,8,61,0,9,218,82,7,23,0,8,109,0,8,45,0,9,186,0,8,13,0,8,141,0,8,77,0,9,250,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,198,81,7,11,0,8,99,0,8,35,0,9,166,0,8,3,0,8,131,0,8,67,0,9,230,80,7,7,0,8,91,0,8,27,0,9,150,84,7,67,0,8,123,0,8,59,0,9,214,82,7,19,0,8,107,0,8,43,0,9,182,0,8,11,0,8,139,0,8,75,0,9,246,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,206,81,7,15,0,8,103,0,8,39,0,9,174,0,8,7,0,8,135,0,8,71,0,9,238,80,7,9,0,8,95,0,8,31,0,9,158,84,7,99,0,8,127,0,8,63,0,9,222,82,7,27,0,8,111,0,8,47,0,9,190,0,8,15,0,8,143,0,8,79,0,9,254,96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,193,80,7,10,0,8,96,0,8,32,0,9,161,0,8,0,0,8,128,0,8,64,0,9,225,80,7,6,0,8,88,0,8,24,0,9,145,83,7,59,0,8,120,0,8,56,0,9,209,81,7,17,0,8,104,0,8,40,0,9,177,0,8,8,0,8,136,0,8,72,0,9,241,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,201,81,7,13,0,8,100,0,8,36,0,9,169,0,8,4,0,8,132,0,8,68,0,9,233,80,7,8,0,8,92,0,8,28,0,9,153,84,7,83,0,8,124,0,8,60,0,9,217,82,7,23,0,8,108,0,8,44,0,9,185,0,8,12,0,8,140,0,8,76,0,9,249,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,197,81,7,11,0,8,98,0,8,34,0,9,165,0,8,2,0,8,130,0,8,66,0,9,229,80,7,7,0,8,90,0,8,26,0,9,149,84,7,67,0,8,122,0,8,58,0,9,213,82,7,19,0,8,106,0,8,42,0,9,181,0,8,10,0,8,138,0,8,74,0,9,245,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,205,81,7,15,0,8,102,0,8,38,0,9,173,0,8,6,0,8,134,0,8,70,0,9,237,80,7,9,0,8,94,0,8,30,0,9,157,84,7,99,0,8,126,0,8,62,0,9,221,82,7,27,0,8,110,0,8,46,0,9,189,0,8,14,0,8,142,0,8,78,0,9,253,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,195,80,7,10,0,8,97,0,8,33,0,9,163,0,8,1,0,8,129,0,8,65,0,9,227,80,7,6,0,8,89,0,8,25,0,9,147,83,7,59,0,8,121,0,8,57,0,9,211,81,7,17,0,8,105,0,8,41,0,9,179,0,8,9,0,8,137,0,8,73,0,9,243,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,203,81,7,13,0,8,101,0,8,37,0,9,171,0,8,5,0,8,133,0,8,69,0,9,235,80,7,8,0,8,93,0,8,29,0,9,155,84,7,83,0,8,125,0,8,61,0,9,219,82,7,23,0,8,109,0,8,45,0,9,187,0,8,13,0,8,141,0,8,77,0,9,251,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,199,81,7,11,0,8,99,0,8,35,0,9,167,0,8,3,0,8,131,0,8,67,0,9,231,80,7,7,0,8,91,0,8,27,0,9,151,84,7,67,0,8,123,0,8,59,0,9,215,82,7,19,0,8,107,0,8,43,0,9,183,0,8,11,0,8,139,0,8,75,0,9,247,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,207,81,7,15,0,8,103,0,8,39,0,9,175,0,8,7,0,8,135,0,8,71,0,9,239,80,7,9,0,8,95,0,8,31,0,9,159,84,7,99,0,8,127,0,8,63,0,9,223,82,7,27,0,8,111,0,8,47,0,9,191,0,8,15,0,8,143,0,8,79,0,9,255],w=[80,5,1,87,5,257,83,5,17,91,5,4097,81,5,5,89,5,1025,85,5,65,93,5,16385,80,5,3,88,5,513,84,5,33,92,5,8193,82,5,9,90,5,2049,86,5,129,192,5,24577,80,5,2,87,5,385,83,5,25,91,5,6145,81,5,7,89,5,1537,85,5,97,93,5,24577,80,5,4,88,5,769,84,5,49,92,5,12289,82,5,13,90,5,3073,86,5,193,192,5,24577],x=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],k=[0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0,112,112],C=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577],S=[0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13];t.prototype.inflateInit=function(t,i){return t||(t=u),i&&(i=!1),this.istate=new e,this.istate.inflateInit(this,i?-t:t)},t.prototype.inflate=function(t){return null==this.istate?-2:this.istate.inflate(this,t)},t.prototype.inflateEnd=function(){if(null==this.istate)return-2;var t=istate.inflateEnd(this);return this.istate=null,t},t.prototype.inflateSync=function(){return istate.inflateSync(this)},t.prototype.inflateSetDictionary=function(t,e){return istate.inflateSetDictionary(this,t,e)},e.prototype.inflateReset=function(t){return null==t||null==t.istate?-2:(t.total_in=t.total_out=0,t.msg=null,t.istate.mode=0!=t.istate.nowrap?7:0,t.istate.blocks.reset(t,null),f)},e.prototype.inflateEnd=function(t){return null!=this.blocks&&this.blocks.free(t),this.blocks=null,f},e.prototype.inflateInit=function(t,e){return t.msg=null,this.blocks=null,nowrap=0,e<0&&(e=-e,nowrap=1),e<8||e>15?(this.inflateEnd(t),-2):(this.wbits=e,t.istate.blocks=new i(t,0!=t.istate.nowrap?null:this,1<<e),this.inflateReset(t),f)},e.prototype.inflate=function(t,e){var i,n;if(null==t||null==t.istate||null==t.next_in)return-2;for(e=4==e?m:f,i=m;;)switch(t.istate.mode){case 0:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,8!=(15&(t.istate.method=t.next_in[t.next_in_index++]))){t.istate.mode=13,t.msg="unknown compression method",t.istate.marker=5;break}if(8+(t.istate.method>>4)>t.istate.wbits){t.istate.mode=13,t.msg="invalid window size",t.istate.marker=5;break}t.istate.mode=1;case 1:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,n=255&t.next_in[t.next_in_index++],((t.istate.method<<8)+n)%31!=0){t.istate.mode=13,t.msg="incorrect header check",t.istate.marker=5;break}if(0==(32&n)){t.istate.mode=7;break}t.istate.mode=2;case 2:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=3;case 3:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=4;case 4:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=5;case 5:return 0==t.avail_in?i:(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.adler=t.istate.need,t.istate.mode=6,2);case 6:return t.istate.mode=13,t.msg="need dictionary",t.istate.marker=0,-2;case 7:if(-3==(i=t.istate.blocks.proc(t,i))){t.istate.mode=13,t.istate.marker=0;break}if(i==f&&(i=e),i!=p)return i;if(i=e,t.istate.blocks.reset(t,t.istate.was),0!=t.istate.nowrap){t.istate.mode=12;break}t.istate.mode=8;case 8:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=9;case 9:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=10;case 10:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=11;case 11:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.istate.was[0]!=t.istate.need){t.istate.mode=13,t.msg="incorrect data check",t.istate.marker=5;break}t.istate.mode=12;case 12:return p;case 13:return-3;default:return-2}},e.prototype.inflateSetDictionary=function(t,e,i){var n=0,r=i;return null==t||null==t.istate||6!=t.istate.mode?-2:t._adler.adler32(1,e,0,i)!=t.adler?-3:(t.adler=t._adler.adler32(0,null,0,0),r>=1<<t.istate.wbits&&(r=(1<<t.istate.wbits)-1,n=i-r),t.istate.blocks.set_dictionary(e,n,r),t.istate.mode=7,f)};var T=[0,0,255,255];e.prototype.inflateSync=function(t){var e,i,n,r,a;if(null==t||null==t.istate)return-2;if(13!=t.istate.mode&&(t.istate.mode=13,t.istate.marker=0),0==(e=t.avail_in))return m;for(i=t.next_in_index,n=t.istate.marker;0!=e&&n<4;)t.next_in[i]==T[n]?n++:n=0!=t.next_in[i]?0:4-n,i++,e--;return t.total_in+=i-t.next_in_index,t.next_in_index=i,t.avail_in=e,t.istate.marker=n,4!=n?-3:(r=t.total_in,a=t.total_out,this.inflateReset(t),t.total_in=r,t.total_out=a,t.istate.mode=7,f)},e.prototype.inflateSyncPoint=function(t){return null==t||null==t.istate||null==t.istate.blocks?-2:t.istate.blocks.sync_point()};var A=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];i.prototype.reset=function(t,e){e&&(e[0]=this.check),6==this.mode&&this.codes.free(t),this.mode=g,this.bitk=0,this.bitb=0,this.read=this.write=0,this.checkfn&&(t.adler=this.check=t._adler.adler32(0,null,0,0))},i.prototype.proc=function(t,e){var i,n,r,s,l,c,u;for(s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,c=this.write,u=c<this.read?this.read-c-1:this.end-c;;)switch(this.mode){case g:for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}switch(i=7&n,this.last=1&i,i>>>1){case 0:n>>>=3,r-=3,i=7&r,n>>>=i,r-=i,this.mode=1;break;case 1:var h=new Int32Array(1),d=new Int32Array(1),m=[],_=[];a(h,d,m,_,t),this.codes.init(h[0],d[0],m[0],0,_[0],0,t),n>>>=3,r-=3,this.mode=6;break;case 2:n>>>=3,r-=3,this.mode=3;break;case 3:return n>>>=3,r-=3,this.mode=13,t.msg="invalid block type",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e)}break;case 1:for(;r<32;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if((~n>>>16&65535)!=(65535&n))return this.mode=13,t.msg="invalid stored block lengths",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);this.left=65535&n,n=r=0,this.mode=0!=this.left?2:0!=this.last?7:g;break;case 2:if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=c,this.inflate_flush(t,e);if(0==u&&(c==end&&0!=read&&(c=0,u=c<this.read?this.read-c-1:this.end-c),0==u&&(this.write=c,e=this.inflate_flush(t,e),c=this.write,u=c<this.read?this.read-c-1:this.end-c,c==this.end&&0!=this.read&&(c=0,u=c<this.read?this.read-c-1:this.end-c),0==u)))return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);if(e=f,i=this.left,i>l&&(i=l),i>u&&(i=u),o(t.next_in,s,this.window,c,i),s+=i,l-=i,c+=i,u-=i,0!=(this.left-=i))break;this.mode=0!=this.last?7:g;break;case 3:for(;r<14;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(this.table=i=16383&n,(31&i)>29||(i>>5&31)>29)return this.mode=9,t.msg="too many length or distance symbols",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);if(i=258+(31&i)+(i>>5&31),null==this.blens||this.blens.length<i)this.blens=new Int32Array(i);else for(var y=0;y<i;y++)this.blens[y]=0;n>>>=14,r-=14,this.index=0,mode=4;case 4:for(;this.index<4+(this.table>>>10);){for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}this.blens[A[this.index++]]=7&n,n>>>=3,r-=3}for(;this.index<19;)this.blens[A[this.index++]]=0;if(this.bb[0]=7,(i=this.inftree.inflate_trees_bits(this.blens,this.bb,this.tb,this.hufts,t))!=f)return e=i,-3==e&&(this.blens=null,this.mode=9),this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=c,this.inflate_flush(t,e);this.index=0,this.mode=5;case 5:for(;;){if(i=this.table,!(this.index<258+(31&i)+(i>>5&31)))break;var y,b,w;for(i=this.bb[0];r<i;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(i=this.hufts[3*(this.tb[0]+(n&v[i]))+1],(w=this.hufts[3*(this.tb[0]+(n&v[i]))+2])<16)n>>>=i,r-=i,this.blens[this.index++]=w;else{for(y=18==w?7:w-14,b=18==w?11:3;r<i+y;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(n>>>=i,r-=i,b+=n&v[y],n>>>=y,r-=y,y=this.index,i=this.table,y+b>258+(31&i)+(i>>5&31)||16==w&&y<1)return this.blens=null,this.mode=9,t.msg="invalid bit length repeat",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);w=16==w?this.blens[y-1]:0;do{this.blens[y++]=w}while(0!=--b);this.index=y}}this.tb[0]=-1;var h=new Int32Array(1),d=new Int32Array(1),m=new Int32Array(1),_=new Int32Array(1);if(h[0]=9,d[0]=6,i=this.table,(i=this.inftree.inflate_trees_dynamic(257+(31&i),1+(i>>5&31),this.blens,h,d,m,_,this.hufts,t))!=f)return-3==i&&(this.blens=null,this.mode=13),e=i,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);this.codes.init(h[0],d[0],this.hufts,m[0],this.hufts,_[0],t),this.mode=6;case 6:if(this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,(e=this.codes.proc(this,t,e))!=p)return this.inflate_flush(t,e);if(e=f,this.codes.free(t),s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,c=this.write,u=c<this.read?this.read-c-1:this.end-c,0==this.last){this.mode=g;break}this.mode=7;case 7:if(this.write=c,e=this.inflate_flush(t,e),c=this.write,u=c<this.read?this.read-c-1:this.end-c,this.read!=this.write)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);mode=12;case 8:return e=p,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);case 9:return e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e);default:return e=-2,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=c,this.inflate_flush(t,e)}},i.prototype.free=function(t){this.reset(t,null),this.window=null,this.hufts=null},i.prototype.set_dictionary=function(t,e,i){o(t,e,window,0,i),this.read=this.write=i},i.prototype.sync_point=function(){return 1==this.mode},i.prototype.inflate_flush=function(t,e){var i,n,r;return n=t.next_out_index,r=this.read,i=(r<=this.write?this.write:this.end)-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==m&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i,r==this.end&&(r=0,this.write==this.end&&(this.write=0),i=this.write-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==m&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i),t.next_out_index=n,this.read=r,e};n.prototype.init=function(t,e,i,n,r,a,o){this.mode=0,this.lbits=t,this.dbits=e,this.ltree=i,this.ltree_index=n,this.dtree=r,this.dtree_index=a,this.tree=null},n.prototype.proc=function(t,e,i){var n,r,a,o,s,l,c,u=0,h=0,d=0;for(d=e.next_in_index,o=e.avail_in,u=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s;;)switch(this.mode){case 0:if(l>=258&&o>=10&&(t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,i=this.inflate_fast(this.lbits,this.dbits,this.ltree,this.ltree_index,this.dtree,this.dtree_index,t,e),d=e.next_in_index,o=e.avail_in,u=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s,i!=f)){this.mode=i==p?7:9;break}this.need=this.lbits,this.tree=this.ltree,this.tree_index=this.ltree_index,this.mode=1;case 1:for(n=this.need;h<n;){if(0==o)return t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,u|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(u&v[n])),u>>>=this.tree[r+1],h-=this.tree[r+1],0==(a=this.tree[r])){this.lit=this.tree[r+2],this.mode=6;break}if(0!=(16&a)){this.get=15&a,this.len=this.tree[r+2],this.mode=2;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}if(0!=(32&a)){this.mode=7;break}return this.mode=9,e.msg="invalid literal/length code",i=-3,t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 2:for(n=this.get;h<n;){if(0==o)return t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,u|=(255&e.next_in[d++])<<h,h+=8}this.len+=u&v[n],u>>=n,h-=n,this.need=this.dbits,this.tree=this.dtree,this.tree_index=this.dtree_index,this.mode=3;case 3:for(n=this.need;h<n;){if(0==o)return t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,u|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(u&v[n])),u>>=this.tree[r+1],h-=this.tree[r+1],0!=(16&(a=this.tree[r]))){this.get=15&a,this.dist=this.tree[r+2],this.mode=4;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}return this.mode=9,e.msg="invalid distance code",i=-3,t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 4:for(n=this.get;h<n;){if(0==o)return t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,u|=(255&e.next_in[d++])<<h,h+=8}this.dist+=u&v[n],u>>=n,h-=n,this.mode=5;case 5:for(c=s-this.dist;c<0;)c+=t.end;for(;0!=this.len;){if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);t.window[s++]=t.window[c++],l--,c==t.end&&(c=0),this.len--}this.mode=0;break;case 6:if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,t.window[s++]=this.lit,l--,this.mode=0;break;case 7:if(h>7&&(h-=8,o++,d--),t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,t.read!=t.write)return t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);this.mode=8;case 8:return i=p,t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 9:return i=-3,t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);default:return i=-2,t.bitb=u,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i)}},n.prototype.free=function(t){},n.prototype.inflate_fast=function(t,e,i,n,r,a,s,l){var c,u,h,d,m,g,_,y,b,w,x,k,C,S,T,A;_=l.next_in_index,y=l.avail_in,m=s.bitb,g=s.bitk,b=s.write,w=b<s.read?s.read-b-1:s.end-b,x=v[t],k=v[e];do{for(;g<20;)y--,m|=(255&l.next_in[_++])<<g,g+=8;if(c=m&x,u=i,h=n,A=3*(h+c),0!=(d=u[A]))for(;;){if(m>>=u[A+1],g-=u[A+1],0!=(16&d)){for(d&=15,C=u[A+2]+(m&v[d]),m>>=d,g-=d;g<15;)y--,m|=(255&l.next_in[_++])<<g,g+=8;for(c=m&k,u=r,h=a,A=3*(h+c),d=u[A];;){if(m>>=u[A+1],g-=u[A+1],0!=(16&d)){for(d&=15;g<d;)y--,m|=(255&l.next_in[_++])<<g,g+=8;if(S=u[A+2]+(m&v[d]),m>>=d,g-=d,w-=C,b>=S)T=b-S,s.window[b++]=s.window[T++],s.window[b++]=s.window[T++],C-=2;else{T=b-S;do{T+=s.end}while(T<0);if(d=s.end-T,C>d){if(C-=d,b-T>0&&d>b-T)do{s.window[b++]=s.window[T++]}while(0!=--d);else o(s.window,T,s.window,b,d),b+=d,T+=d,d=0;T=0}}do{s.window[b++]=s.window[T++]}while(0!=--C);break}if(0!=(64&d))return l.msg="invalid distance code",C=l.avail_in-y,C=g>>3<C?g>>3:C,y+=C,_-=C,g-=C<<3,s.bitb=m,s.bitk=g,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,-3;c+=u[A+2],c+=m&v[d],A=3*(h+c),d=u[A]}break}if(0!=(64&d))return 0!=(32&d)?(C=l.avail_in-y,C=g>>3<C?g>>3:C,y+=C,_-=C,g-=C<<3,s.bitb=m,s.bitk=g,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,p):(l.msg="invalid literal/length code",C=l.avail_in-y,C=g>>3<C?g>>3:C,y+=C,_-=C,g-=C<<3,s.bitb=m,s.bitk=g,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,-3);if(c+=u[A+2],c+=m&v[d],A=3*(h+c),0==(d=u[A])){m>>=u[A+1],g-=u[A+1],s.window[b++]=u[A+2],w--;break}}else m>>=u[A+1],g-=u[A+1],s.window[b++]=u[A+2],w--}while(w>=258&&y>=10);return C=l.avail_in-y,C=g>>3<C?g>>3:C,y+=C,_-=C,g-=C<<3,s.bitb=m,s.bitk=g,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,f},r.prototype.huft_build=function(t,e,i,n,r,a,s,l,c,u,d){var p,v,g,_,y,b,w,x,k,C,S,T,A,M,E;C=0,y=i;do{this.c[t[e+C]]++,C++,y--}while(0!=y);if(this.c[0]==i)return s[0]=-1,l[0]=0,f;for(x=l[0],b=1;b<=15&&0==this.c[b];b++);for(w=b,x<b&&(x=b),y=15;0!=y&&0==this.c[y];y--);for(g=y,x>y&&(x=y),l[0]=x,M=1<<b;b<y;b++,M<<=1)if((M-=this.c[b])<0)return-3;if((M-=this.c[y])<0)return-3;for(this.c[y]+=M,this.x[1]=b=0,C=1,A=2;0!=--y;)this.x[A]=b+=this.c[C],A++,C++;y=0,C=0;do{0!=(b=t[e+C])&&(this.v[this.x[b]++]=y),C++}while(++y<i);for(i=this.x[g],this.x[0]=y=0,C=0,_=-1,T=-x,this.u[0]=0,S=0,E=0;w<=g;w++)for(p=this.c[w];0!=p--;){for(;w>T+x;){if(_++,T+=x,E=g-T,E=E>x?x:E,(v=1<<(b=w-T))>p+1&&(v-=p+1,A=w,b<E))for(;++b<E&&!((v<<=1)<=this.c[++A]);)v-=this.c[A];if(E=1<<b,this.hn[0]+E>h)return-3;this.u[_]=S=this.hn[0],this.hn[0]+=E,0!=_?(this.x[_]=y,this.r[0]=b,this.r[1]=x,b=y>>>T-x,this.r[2]=S-this.u[_-1]-b,o(this.r,0,c,3*(this.u[_-1]+b),3)):s[0]=S}for(this.r[1]=w-T,C>=i?this.r[0]=192:d[C]<n?(this.r[0]=this.v[C]<256?0:96,this.r[2]=this.v[C++]):(this.r[0]=a[this.v[C]-n]+16+64,this.r[2]=r[this.v[C++]-n]),v=1<<w-T,b=y>>>T;b<E;b+=v)o(this.r,0,c,3*(S+b),3);for(b=1<<w-1;0!=(y&b);b>>>=1)y^=b;for(y^=b,k=(1<<T)-1;(y&k)!=this.x[_];)_--,T-=x,k=(1<<T)-1}return 0!=M&&1!=g?m:f},r.prototype.inflate_trees_bits=function(t,e,i,n,r){var a;return this.initWorkArea(19),this.hn[0]=0,a=this.huft_build(t,0,19,19,null,null,i,e,n,this.hn,this.v),-3==a?r.msg="oversubscribed dynamic bit lengths tree":a!=m&&0!=e[0]||(r.msg="incomplete dynamic bit lengths tree",a=-3),a},r.prototype.inflate_trees_dynamic=function(t,e,i,n,r,a,o,s,l){var c;return this.initWorkArea(288),this.hn[0]=0,(c=this.huft_build(i,0,t,257,x,k,a,n,s,this.hn,this.v))!=f||0==n[0]?(-3==c?l.msg="oversubscribed literal/length tree":-4!=c&&(l.msg="incomplete literal/length tree",c=-3),c):(this.initWorkArea(288),c=this.huft_build(i,t,e,0,C,S,o,r,s,this.hn,this.v),c!=f||0==r[0]&&t>257?(-3==c?l.msg="oversubscribed distance tree":c==m?(l.msg="incomplete distance tree",c=-3):-4!=c&&(l.msg="empty distance tree with lengths",c=-3),c):f)},r.prototype.initWorkArea=function(t){null==this.hn&&(this.hn=new Int32Array(1),this.v=new Int32Array(t),this.c=new Int32Array(16),this.r=new Int32Array(3),this.u=new 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c=15,h=1440,d=0,f=0,p=1,m=-5,v=[0,1,3,7,15,31,63,127,255,511,1023,2047,4095,8191,16383,32767,65535],g=0,_=9,y=5,b=[96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,192,80,7,10,0,8,96,0,8,32,0,9,160,0,8,0,0,8,128,0,8,64,0,9,224,80,7,6,0,8,88,0,8,24,0,9,144,83,7,59,0,8,120,0,8,56,0,9,208,81,7,17,0,8,104,0,8,40,0,9,176,0,8,8,0,8,136,0,8,72,0,9,240,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,200,81,7,13,0,8,100,0,8,36,0,9,168,0,8,4,0,8,132,0,8,68,0,9,232,80,7,8,0,8,92,0,8,28,0,9,152,84,7,83,0,8,124,0,8,60,0,9,216,82,7,23,0,8,108,0,8,44,0,9,184,0,8,12,0,8,140,0,8,76,0,9,248,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,196,81,7,11,0,8,98,0,8,34,0,9,164,0,8,2,0,8,130,0,8,66,0,9,228,80,7,7,0,8,90,0,8,26,0,9,148,84,7,67,0,8,122,0,8,58,0,9,212,82,7,19,0,8,106,0,8,42,0,9,180,0,8,10,0,8,138,0,8,74,0,9,244,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,204,81,7,15,0,8,102,0,8,38,0,9,172,0,8,6,0,8,134,0,8,70,0,9,236,80,7,9,0,8,94,0,8,30,0,9,156,84,7,99,0,8,126,0,8,62,0,9,220,82,7,27,0,8,110,0,8,46,0,9,188,0,8,14,0,8,142,0,8,78,0,9,252,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,194,80,7,10,0,8,97,0,8,33,0,9,162,0,8,1,0,8,129,0,8,65,0,9,226,80,7,6,0,8,89,0,8,25,0,9,146,83,7,59,0,8,121,0,8,57,0,9,210,81,7,17,0,8,105,0,8,41,0,9,178,0,8,9,0,8,137,0,8,73,0,9,242,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,202,81,7,13,0,8,101,0,8,37,0,9,170,0,8,5,0,8,133,0,8,69,0,9,234,80,7,8,0,8,93,0,8,29,0,9,154,84,7,83,0,8,125,0,8,61,0,9,218,82,7,23,0,8,109,0,8,45,0,9,186,0,8,13,0,8,141,0,8,77,0,9,250,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,198,81,7,11,0,8,99,0,8,35,0,9,166,0,8,3,0,8,131,0,8,67,0,9,230,80,7,7,0,8,91,0,8,27,0,9,150,84,7,67,0,8,123,0,8,59,0,9,214,82,7,19,0,8,107,0,8,43,0,9,182,0,8,11,0,8,139,0,8,75,0,9,246,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,206,81,7,15,0,8,103,0,8,39,0,9,174,0,8,7,0,8,135,0,8,71,0,9,238,80,7,9,0,8,95,0,8,31,0,9,158,84,7,99,0,8,127,0,8,63,0,9,222,82,7,27,0,8,111,0,8,47,0,9,190,0,8,15,0,8,143,0,8,79,0,9,254,96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,193,80,7,10,0,8,96,0,8,32,0,9,161,0,8,0,0,8,128,0,8,64,0,9,225,80,7,6,0,8,88,0,8,24,0,9,145,83,7,59,0,8,120,0,8,56,0,9,209,81,7,17,0,8,104,0,8,40,0,9,177,0,8,8,0,8,136,0,8,72,0,9,241,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,201,81,7,13,0,8,100,0,8,36,0,9,169,0,8,4,0,8,132,0,8,68,0,9,233,80,7,8,0,8,92,0,8,28,0,9,153,84,7,83,0,8,124,0,8,60,0,9,217,82,7,23,0,8,108,0,8,44,0,9,185,0,8,12,0,8,140,0,8,76,0,9,249,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,197,81,7,11,0,8,98,0,8,34,0,9,165,0,8,2,0,8,130,0,8,66,0,9,229,80,7,7,0,8,90,0,8,26,0,9,149,84,7,67,0,8,122,0,8,58,0,9,213,82,7,19,0,8,106,0,8,42,0,9,181,0,8,10,0,8,138,0,8,74,0,9,245,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,205,81,7,15,0,8,102,0,8,38,0,9,173,0,8,6,0,8,134,0,8,70,0,9,237,80,7,9,0,8,94,0,8,30,0,9,157,84,7,99,0,8,126,0,8,62,0,9,221,82,7,27,0,8,110,0,8,46,0,9,189,0,8,14,0,8,142,0,8,78,0,9,253,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,195,80,7,10,0,8,97,0,8,33,0,9,163,0,8,1,0,8,129,0,8,65,0,9,227,80,7,6,0,8,89,0,8,25,0,9,147,83,7,59,0,8,121,0,8,57,0,9,211,81,7,17,0,8,105,0,8,41,0,9,179,0,8,9,0,8,137,0,8,73,0,9,243,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,203,81,7,13,0,8,101,0,8,37,0,9,171,0,8,5,0,8,133,0,8,69,0,9,235,80,7,8,0,8,93,0,8,29,0,9,155,84,7,83,0,8,125,0,8,61,0,9,219,82,7,23,0,8,109,0,8,45,0,9,187,0,8,13,0,8,141,0,8,77,0,9,251,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,199,81,7,11,0,8,99,0,8,35,0,9,167,0,8,3,0,8,131,0,8,67,0,9,231,80,7,7,0,8,91,0,8,27,0,9,151,84,7,67,0,8,123,0,8,59,0,9,215,82,7,19,0,8,107,0,8,43,0,9,183,0,8,11,0,8,139,0,8,75,0,9,247,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,207,81,7,15,0,8,103,0,8,39,0,9,175,0,8,7,0,8,135,0,8,71,0,9,239,80,7,9,0,8,95,0,8,31,0,9,159,84,7,99,0,8,127,0,8,63,0,9,223,82,7,27,0,8,111,0,8,47,0,9,191,0,8,15,0,8,143,0,8,79,0,9,255],w=[80,5,1,87,5,257,83,5,17,91,5,4097,81,5,5,89,5,1025,85,5,65,93,5,16385,80,5,3,88,5,513,84,5,33,92,5,8193,82,5,9,90,5,2049,86,5,129,192,5,24577,80,5,2,87,5,385,83,5,25,91,5,6145,81,5,7,89,5,1537,85,5,97,93,5,24577,80,5,4,88,5,769,84,5,49,92,5,12289,82,5,13,90,5,3073,86,5,193,192,5,24577],x=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],k=[0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0,112,112],C=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577],S=[0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13];t.prototype.inflateInit=function(t,i){return t||(t=c),i&&(i=!1),this.istate=new e,this.istate.inflateInit(this,i?-t:t)},t.prototype.inflate=function(t){return null==this.istate?-2:this.istate.inflate(this,t)},t.prototype.inflateEnd=function(){if(null==this.istate)return-2;var t=istate.inflateEnd(this);return this.istate=null,t},t.prototype.inflateSync=function(){return istate.inflateSync(this)},t.prototype.inflateSetDictionary=function(t,e){return istate.inflateSetDictionary(this,t,e)},e.prototype.inflateReset=function(t){return null==t||null==t.istate?-2:(t.total_in=t.total_out=0,t.msg=null,t.istate.mode=0!=t.istate.nowrap?7:0,t.istate.blocks.reset(t,null),f)},e.prototype.inflateEnd=function(t){return null!=this.blocks&&this.blocks.free(t),this.blocks=null,f},e.prototype.inflateInit=function(t,e){return t.msg=null,this.blocks=null,nowrap=0,e<0&&(e=-e,nowrap=1),e<8||e>15?(this.inflateEnd(t),-2):(this.wbits=e,t.istate.blocks=new i(t,0!=t.istate.nowrap?null:this,1<<e),this.inflateReset(t),f)},e.prototype.inflate=function(t,e){var i,n;if(null==t||null==t.istate||null==t.next_in)return-2;for(e=4==e?m:f,i=m;;)switch(t.istate.mode){case 0:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,8!=(15&(t.istate.method=t.next_in[t.next_in_index++]))){t.istate.mode=13,t.msg="unknown compression method",t.istate.marker=5;break}if(8+(t.istate.method>>4)>t.istate.wbits){t.istate.mode=13,t.msg="invalid window size",t.istate.marker=5;break}t.istate.mode=1;case 1:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,n=255&t.next_in[t.next_in_index++],((t.istate.method<<8)+n)%31!=0){t.istate.mode=13,t.msg="incorrect header check",t.istate.marker=5;break}if(0==(32&n)){t.istate.mode=7;break}t.istate.mode=2;case 2:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=3;case 3:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=4;case 4:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=5;case 5:return 0==t.avail_in?i:(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.adler=t.istate.need,t.istate.mode=6,2);case 6:return t.istate.mode=13,t.msg="need dictionary",t.istate.marker=0,-2;case 7:if(-3==(i=t.istate.blocks.proc(t,i))){t.istate.mode=13,t.istate.marker=0;break}if(i==f&&(i=e),i!=p)return i;if(i=e,t.istate.blocks.reset(t,t.istate.was),0!=t.istate.nowrap){t.istate.mode=12;break}t.istate.mode=8;case 8:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=9;case 9:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=10;case 10:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=11;case 11:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.istate.was[0]!=t.istate.need){t.istate.mode=13,t.msg="incorrect data check",t.istate.marker=5;break}t.istate.mode=12;case 12:return p;case 13:return-3;default:return-2}},e.prototype.inflateSetDictionary=function(t,e,i){var n=0,r=i;return null==t||null==t.istate||6!=t.istate.mode?-2:t._adler.adler32(1,e,0,i)!=t.adler?-3:(t.adler=t._adler.adler32(0,null,0,0),r>=1<<t.istate.wbits&&(r=(1<<t.istate.wbits)-1,n=i-r),t.istate.blocks.set_dictionary(e,n,r),t.istate.mode=7,f)};var T=[0,0,255,255];e.prototype.inflateSync=function(t){var e,i,n,r,a;if(null==t||null==t.istate)return-2;if(13!=t.istate.mode&&(t.istate.mode=13,t.istate.marker=0),0==(e=t.avail_in))return m;for(i=t.next_in_index,n=t.istate.marker;0!=e&&n<4;)t.next_in[i]==T[n]?n++:n=0!=t.next_in[i]?0:4-n,i++,e--;return t.total_in+=i-t.next_in_index,t.next_in_index=i,t.avail_in=e,t.istate.marker=n,4!=n?-3:(r=t.total_in,a=t.total_out,this.inflateReset(t),t.total_in=r,t.total_out=a,t.istate.mode=7,f)},e.prototype.inflateSyncPoint=function(t){return null==t||null==t.istate||null==t.istate.blocks?-2:t.istate.blocks.sync_point()};var M=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];i.prototype.reset=function(t,e){e&&(e[0]=this.check),6==this.mode&&this.codes.free(t),this.mode=g,this.bitk=0,this.bitb=0,this.read=this.write=0,this.checkfn&&(t.adler=this.check=t._adler.adler32(0,null,0,0))},i.prototype.proc=function(t,e){var i,n,r,s,l,u,c;for(s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,u=this.write,c=u<this.read?this.read-u-1:this.end-u;;)switch(this.mode){case g:for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}switch(i=7&n,this.last=1&i,i>>>1){case 0:n>>>=3,r-=3,i=7&r,n>>>=i,r-=i,this.mode=1;break;case 1:var h=new Int32Array(1),d=new Int32Array(1),m=[],_=[];a(h,d,m,_,t),this.codes.init(h[0],d[0],m[0],0,_[0],0,t),n>>>=3,r-=3,this.mode=6;break;case 2:n>>>=3,r-=3,this.mode=3;break;case 3:return n>>>=3,r-=3,this.mode=13,t.msg="invalid block type",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e)}break;case 1:for(;r<32;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if((~n>>>16&65535)!=(65535&n))return this.mode=13,t.msg="invalid stored block lengths",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);this.left=65535&n,n=r=0,this.mode=0!=this.left?2:0!=this.last?7:g;break;case 2:if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=u,this.inflate_flush(t,e);if(0==c&&(u==end&&0!=read&&(u=0,c=u<this.read?this.read-u-1:this.end-u),0==c&&(this.write=u,e=this.inflate_flush(t,e),u=this.write,c=u<this.read?this.read-u-1:this.end-u,u==this.end&&0!=this.read&&(u=0,c=u<this.read?this.read-u-1:this.end-u),0==c)))return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);if(e=f,i=this.left,i>l&&(i=l),i>c&&(i=c),o(t.next_in,s,this.window,u,i),s+=i,l-=i,u+=i,c-=i,0!=(this.left-=i))break;this.mode=0!=this.last?7:g;break;case 3:for(;r<14;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(this.table=i=16383&n,(31&i)>29||(i>>5&31)>29)return this.mode=9,t.msg="too many length or distance symbols",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);if(i=258+(31&i)+(i>>5&31),null==this.blens||this.blens.length<i)this.blens=new Int32Array(i);else for(var y=0;y<i;y++)this.blens[y]=0;n>>>=14,r-=14,this.index=0,mode=4;case 4:for(;this.index<4+(this.table>>>10);){for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}this.blens[M[this.index++]]=7&n,n>>>=3,r-=3}for(;this.index<19;)this.blens[M[this.index++]]=0;if(this.bb[0]=7,(i=this.inftree.inflate_trees_bits(this.blens,this.bb,this.tb,this.hufts,t))!=f)return e=i,-3==e&&(this.blens=null,this.mode=9),this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=u,this.inflate_flush(t,e);this.index=0,this.mode=5;case 5:for(;;){if(i=this.table,!(this.index<258+(31&i)+(i>>5&31)))break;var y,b,w;for(i=this.bb[0];r<i;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(i=this.hufts[3*(this.tb[0]+(n&v[i]))+1],(w=this.hufts[3*(this.tb[0]+(n&v[i]))+2])<16)n>>>=i,r-=i,this.blens[this.index++]=w;else{for(y=18==w?7:w-14,b=18==w?11:3;r<i+y;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(n>>>=i,r-=i,b+=n&v[y],n>>>=y,r-=y,y=this.index,i=this.table,y+b>258+(31&i)+(i>>5&31)||16==w&&y<1)return this.blens=null,this.mode=9,t.msg="invalid bit length repeat",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);w=16==w?this.blens[y-1]:0;do{this.blens[y++]=w}while(0!=--b);this.index=y}}this.tb[0]=-1;var h=new Int32Array(1),d=new Int32Array(1),m=new Int32Array(1),_=new Int32Array(1);if(h[0]=9,d[0]=6,i=this.table,(i=this.inftree.inflate_trees_dynamic(257+(31&i),1+(i>>5&31),this.blens,h,d,m,_,this.hufts,t))!=f)return-3==i&&(this.blens=null,this.mode=13),e=i,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);this.codes.init(h[0],d[0],this.hufts,m[0],this.hufts,_[0],t),this.mode=6;case 6:if(this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,(e=this.codes.proc(this,t,e))!=p)return this.inflate_flush(t,e);if(e=f,this.codes.free(t),s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,u=this.write,c=u<this.read?this.read-u-1:this.end-u,0==this.last){this.mode=g;break}this.mode=7;case 7:if(this.write=u,e=this.inflate_flush(t,e),u=this.write,c=u<this.read?this.read-u-1:this.end-u,this.read!=this.write)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);mode=12;case 8:return e=p,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);case 9:return e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);default:return e=-2,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e)}},i.prototype.free=function(t){this.reset(t,null),this.window=null,this.hufts=null},i.prototype.set_dictionary=function(t,e,i){o(t,e,window,0,i),this.read=this.write=i},i.prototype.sync_point=function(){return 1==this.mode},i.prototype.inflate_flush=function(t,e){var i,n,r;return n=t.next_out_index,r=this.read,i=(r<=this.write?this.write:this.end)-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==m&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i,r==this.end&&(r=0,this.write==this.end&&(this.write=0),i=this.write-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==m&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i),t.next_out_index=n,this.read=r,e};n.prototype.init=function(t,e,i,n,r,a,o){this.mode=0,this.lbits=t,this.dbits=e,this.ltree=i,this.ltree_index=n,this.dtree=r,this.dtree_index=a,this.tree=null},n.prototype.proc=function(t,e,i){var n,r,a,o,s,l,u,c=0,h=0,d=0;for(d=e.next_in_index,o=e.avail_in,c=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s;;)switch(this.mode){case 0:if(l>=258&&o>=10&&(t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,i=this.inflate_fast(this.lbits,this.dbits,this.ltree,this.ltree_index,this.dtree,this.dtree_index,t,e),d=e.next_in_index,o=e.avail_in,c=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s,i!=f)){this.mode=i==p?7:9;break}this.need=this.lbits,this.tree=this.ltree,this.tree_index=this.ltree_index,this.mode=1;case 1:for(n=this.need;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(c&v[n])),c>>>=this.tree[r+1],h-=this.tree[r+1],0==(a=this.tree[r])){this.lit=this.tree[r+2],this.mode=6;break}if(0!=(16&a)){this.get=15&a,this.len=this.tree[r+2],this.mode=2;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}if(0!=(32&a)){this.mode=7;break}return this.mode=9,e.msg="invalid literal/length code",i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 2:for(n=this.get;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}this.len+=c&v[n],c>>=n,h-=n,this.need=this.dbits,this.tree=this.dtree,this.tree_index=this.dtree_index,this.mode=3;case 3:for(n=this.need;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(c&v[n])),c>>=this.tree[r+1],h-=this.tree[r+1],0!=(16&(a=this.tree[r]))){this.get=15&a,this.dist=this.tree[r+2],this.mode=4;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}return this.mode=9,e.msg="invalid distance code",i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 4:for(n=this.get;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}this.dist+=c&v[n],c>>=n,h-=n,this.mode=5;case 5:for(u=s-this.dist;u<0;)u+=t.end;for(;0!=this.len;){if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);t.window[s++]=t.window[u++],l--,u==t.end&&(u=0),this.len--}this.mode=0;break;case 6:if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,t.window[s++]=this.lit,l--,this.mode=0;break;case 7:if(h>7&&(h-=8,o++,d--),t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,t.read!=t.write)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);this.mode=8;case 8:return i=p,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 9:return i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);default:return i=-2,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i)}},n.prototype.free=function(t){},n.prototype.inflate_fast=function(t,e,i,n,r,a,s,l){var u,c,h,d,m,g,_,y,b,w,x,k,C,S,T,M;_=l.next_in_index,y=l.avail_in,m=s.bitb,g=s.bitk,b=s.write,w=b<s.read?s.read-b-1:s.end-b,x=v[t],k=v[e];do{for(;g<20;)y--,m|=(255&l.next_in[_++])<<g,g+=8;if(u=m&x,c=i,h=n,M=3*(h+u),0!=(d=c[M]))for(;;){if(m>>=c[M+1],g-=c[M+1],0!=(16&d)){for(d&=15,C=c[M+2]+(m&v[d]),m>>=d,g-=d;g<15;)y--,m|=(255&l.next_in[_++])<<g,g+=8;for(u=m&k,c=r,h=a,M=3*(h+u),d=c[M];;){if(m>>=c[M+1],g-=c[M+1],0!=(16&d)){for(d&=15;g<d;)y--,m|=(255&l.next_in[_++])<<g,g+=8;if(S=c[M+2]+(m&v[d]),m>>=d,g-=d,w-=C,b>=S)T=b-S,s.window[b++]=s.window[T++],s.window[b++]=s.window[T++],C-=2;else{T=b-S;do{T+=s.end}while(T<0);if(d=s.end-T,C>d){if(C-=d,b-T>0&&d>b-T)do{s.window[b++]=s.window[T++]}while(0!=--d);else o(s.window,T,s.window,b,d),b+=d,T+=d,d=0;T=0}}do{s.window[b++]=s.window[T++]}while(0!=--C);break}if(0!=(64&d))return l.msg="invalid distance code",C=l.avail_in-y,C=g>>3<C?g>>3:C,y+=C,_-=C,g-=C<<3,s.bitb=m,s.bitk=g,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,-3;u+=c[M+2],u+=m&v[d],M=3*(h+u),d=c[M]}break}if(0!=(64&d))return 0!=(32&d)?(C=l.avail_in-y,C=g>>3<C?g>>3:C,y+=C,_-=C,g-=C<<3,s.bitb=m,s.bitk=g,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,p):(l.msg="invalid literal/length code",C=l.avail_in-y,C=g>>3<C?g>>3:C,y+=C,_-=C,g-=C<<3,s.bitb=m,s.bitk=g,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,-3);if(u+=c[M+2],u+=m&v[d],M=3*(h+u),0==(d=c[M])){m>>=c[M+1],g-=c[M+1],s.window[b++]=c[M+2],w--;break}}else m>>=c[M+1],g-=c[M+1],s.window[b++]=c[M+2],w--}while(w>=258&&y>=10);return C=l.avail_in-y,C=g>>3<C?g>>3:C,y+=C,_-=C,g-=C<<3,s.bitb=m,s.bitk=g,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,f},r.prototype.huft_build=function(t,e,i,n,r,a,s,l,u,c,d){var p,v,g,_,y,b,w,x,k,C,S,T,M,A,E;C=0,y=i;do{this.c[t[e+C]]++,C++,y--}while(0!=y);if(this.c[0]==i)return s[0]=-1,l[0]=0,f;for(x=l[0],b=1;b<=15&&0==this.c[b];b++);for(w=b,x<b&&(x=b),y=15;0!=y&&0==this.c[y];y--);for(g=y,x>y&&(x=y),l[0]=x,A=1<<b;b<y;b++,A<<=1)if((A-=this.c[b])<0)return-3;if((A-=this.c[y])<0)return-3;for(this.c[y]+=A,this.x[1]=b=0,C=1,M=2;0!=--y;)this.x[M]=b+=this.c[C],M++,C++;y=0,C=0;do{0!=(b=t[e+C])&&(this.v[this.x[b]++]=y),C++}while(++y<i);for(i=this.x[g],this.x[0]=y=0,C=0,_=-1,T=-x,this.u[0]=0,S=0,E=0;w<=g;w++)for(p=this.c[w];0!=p--;){for(;w>T+x;){if(_++,T+=x,E=g-T,E=E>x?x:E,(v=1<<(b=w-T))>p+1&&(v-=p+1,M=w,b<E))for(;++b<E&&!((v<<=1)<=this.c[++M]);)v-=this.c[M];if(E=1<<b,this.hn[0]+E>h)return-3;this.u[_]=S=this.hn[0],this.hn[0]+=E,0!=_?(this.x[_]=y,this.r[0]=b,this.r[1]=x,b=y>>>T-x,this.r[2]=S-this.u[_-1]-b,o(this.r,0,u,3*(this.u[_-1]+b),3)):s[0]=S}for(this.r[1]=w-T,C>=i?this.r[0]=192:d[C]<n?(this.r[0]=this.v[C]<256?0:96,this.r[2]=this.v[C++]):(this.r[0]=a[this.v[C]-n]+16+64,this.r[2]=r[this.v[C++]-n]),v=1<<w-T,b=y>>>T;b<E;b+=v)o(this.r,0,u,3*(S+b),3);for(b=1<<w-1;0!=(y&b);b>>>=1)y^=b;for(y^=b,k=(1<<T)-1;(y&k)!=this.x[_];)_--,T-=x,k=(1<<T)-1}return 0!=A&&1!=g?m:f},r.prototype.inflate_trees_bits=function(t,e,i,n,r){var a;return this.initWorkArea(19),this.hn[0]=0,a=this.huft_build(t,0,19,19,null,null,i,e,n,this.hn,this.v),-3==a?r.msg="oversubscribed dynamic bit lengths tree":a!=m&&0!=e[0]||(r.msg="incomplete dynamic bit lengths tree",a=-3),a},r.prototype.inflate_trees_dynamic=function(t,e,i,n,r,a,o,s,l){var u;return this.initWorkArea(288),this.hn[0]=0,(u=this.huft_build(i,0,t,257,x,k,a,n,s,this.hn,this.v))!=f||0==n[0]?(-3==u?l.msg="oversubscribed literal/length tree":-4!=u&&(l.msg="incomplete literal/length tree",u=-3),u):(this.initWorkArea(288),u=this.huft_build(i,t,e,0,C,S,o,r,s,this.hn,this.v),u!=f||0==r[0]&&t>257?(-3==u?l.msg="oversubscribed distance tree":u==m?(l.msg="incomplete distance tree",u=-3):-4!=u&&(l.msg="empty distance tree with lengths",u=-3),u):f)},r.prototype.initWorkArea=function(t){null==this.hn&&(this.hn=new Int32Array(1),this.v=new Int32Array(t),this.c=new Int32Array(16),this.r=new Int32Array(3),this.u=new 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o=i(5),s=a(o),l=i(3),u=a(l),c=t.View.extend(s.default.LoggableMixin).extend({_logNamespace:"user",options:{warnAtPercent:85,errorAtPercent:100},initialize:function(t){this.log(this+".initialize:",t),n.extend(this.options,t),this.listenTo(this.model,"change:quota_percent change:total_disk_usage",this.render)},update:function(t){return this.log(this+" updating user data...",t),this.model.loadFromApi(this.model.get("id"),t),this},isOverQuota:function(){return null!==this.model.get("quota_percent")&&this.model.get("quota_percent")>=this.options.errorAtPercent},_render_quota:function(){var t=this.model.toJSON(),e=t.quota_percent,i=r(this._templateQuotaMeter(t)),n=i.find(".progress-bar");return this.isOverQuota()?(n.attr("class","progress-bar progress-bar-danger"),i.find(".quota-meter-text").css("color","white"),this.trigger("quota:over",t)):e>=this.options.warnAtPercent?(n.attr("class","progress-bar progress-bar-warning"),this.trigger("quota:under 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diff --git a/static/scripts/bundled/login.bundled.js b/static/scripts/bundled/login.bundled.js
index d1114c4863b..c134f6ff9ba 100644
--- a/static/scripts/bundled/login.bundled.js
+++ b/static/scripts/bundled/login.bundled.js
@@ -1 +1 @@
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n=i.data;try{n=JSON.parse(n)}catch(e){}t.lastAjax={url:location.href.slice(0,-1)+i.url,data:n}}),t},r.prototype.debugging=function(e){var t=this;try{if(void 0===e)return"true"===localStorage.getItem("galaxy:debug");if(e)return localStorage.setItem("galaxy:debug",!0),!0;localStorage.removeItem("galaxy:debug"),t.debuggingNamespaces(null)}catch(e){console.log((0,v.default)("localStorage not available for debug flag retrieval"))}return!1},r.prototype.debuggingNamespaces=function(e){var t=this;try{if(void 0===e){var o=localStorage.getItem(b);return"string"==typeof o?o.split(","):[]}null===e?localStorage.removeItem(b):localStorage.setItem(b,e);var i=t.debuggingNamespaces();return t.logger&&(t.logger.options.consoleNamespaceWhitelist=i),i}catch(e){console.log((0,v.default)("localStorage not available for debug namespace 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\ No newline at end of file
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\ No newline at end of file
diff --git a/static/scripts/galaxy.pages.js b/static/scripts/galaxy.pages.js
index a8d5d932be2..88c136c79e6 100644
--- a/static/scripts/galaxy.pages.js
+++ b/static/scripts/galaxy.pages.js
@@ -1 +1 @@
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failed")}})}Object.defineProperty(e,"__esModule",{value:!0}),e.default=function(){$(document).ajaxError(function(e,t){var a=t.responseText||t.statusText||"Could not connect to server";return show_modal("Server error",a,{"Ignore error":hide_modal}),!1}),$("[name=page_content]").wymeditor({skin:"galaxy",basePath:editor_base_path,iframeBasePath:iframe_base_path,boxHtml:"<table class='wym_box' width='100%' height='100%'><tr><td><div class='wym_area_top'>"+WYMeditor.TOOLS+"</div></td></tr><tr height='100%'><td><div class='wym_area_main' style='height: 100%;'>"+WYMeditor.IFRAME+WYMeditor.STATUS+"</div></div></td></tr></table>",toolsItems:[{name:"Bold",title:"Strong",css:"wym_tools_strong"},{name:"Italic",title:"Emphasis",css:"wym_tools_emphasis"},{name:"Superscript",title:"Superscript",css:"wym_tools_superscript"},{name:"Subscript",title:"Subscript",css:"wym_tools_subscript"},{name:"InsertOrderedList",title:"Ordered_List",css:"wym_tools_ordered_list"},{name:"InsertUnorderedList",title:"Unordered_List",css:"wym_tools_unordered_list"},{name:"Indent",title:"Indent",css:"wym_tools_indent"},{name:"Outdent",title:"Outdent",css:"wym_tools_outdent"},{name:"Undo",title:"Undo",css:"wym_tools_undo"},{name:"Redo",title:"Redo",css:"wym_tools_redo"},{name:"CreateLink",title:"Link",css:"wym_tools_link"},{name:"Unlink",title:"Unlink",css:"wym_tools_unlink"},{name:"InsertImage",title:"Image",css:"wym_tools_image"},{name:"InsertTable",title:"Table",css:"wym_tools_table"}]});var e=$.wymeditors(0),t=function(t){show_modal("Saving page","progress"),$.ajax({url:save_url,type:"POST",data:{id:page_id,content:e.xhtml(),annotations:JSON.stringify(new Object),_:"true"},success:function(){t()}})};$("#save-button").click(function(){t(function(){hide_modal()})}),$("#close-button").click(function(){window.document.location=page_list_url});var a=$("<div class='galaxy-page-editor-button'><a id='insert-galaxy-link' class='action-button popup' href='#'>Paragraph type</a></div>");$(".wym_area_top").append(a);var i={};$.each(e._options.containersItems,function(t,a){var o=a.name;i[a.title.replace("_"," ")]=function(){e.container(o)}}),make_popupmenu(a,i);var o=$("<div><a id='insert-galaxy-link' class='action-button popup' href='#'>Insert Link to Galaxy Object</a></div>").addClass("galaxy-page-editor-button");$(".wym_area_top").append(o),make_popupmenu(o,{"Insert History Link":function(){e.dialog(l.DIALOG_HISTORY_LINK)},"Insert Dataset Link":function(){e.dialog(l.DIALOG_DATASET_LINK)},"Insert Workflow Link":function(){e.dialog(l.DIALOG_WORKFLOW_LINK)},"Insert Page Link":function(){e.dialog(l.DIALOG_PAGE_LINK)},"Insert Visualization Link":function(){e.dialog(l.DIALOG_VISUALIZATION_LINK)}});var r=$("<div><a id='embed-galaxy-object' class='action-button popup' href='#'>Embed Galaxy Object</a></div>").addClass("galaxy-page-editor-button");$(".wym_area_top").append(r),make_popupmenu(r,{"Embed History":function(){e.dialog(l.DIALOG_EMBED_HISTORY)},"Embed Dataset":function(){e.dialog(l.DIALOG_EMBED_DATASET)},"Embed Workflow":function(){e.dialog(l.DIALOG_EMBED_WORKFLOW)},"Embed Visualization":function(){e.dialog(l.DIALOG_EMBED_VISUALIZATION)}})};var o=function(e){return e&&e.__esModule?e:{default:e}}(t),l={ITEM_HISTORY:"item_history",ITEM_DATASET:"item_dataset",ITEM_WORKFLOW:"item_workflow",ITEM_PAGE:"item_page",ITEM_VISUALIZATION:"item_visualization",DIALOG_HISTORY_LINK:"link_history",DIALOG_DATASET_LINK:"link_dataset",DIALOG_WORKFLOW_LINK:"link_workflow",DIALOG_PAGE_LINK:"link_page",DIALOG_VISUALIZATION_LINK:"link_visualization",DIALOG_EMBED_HISTORY:"embed_history",DIALOG_EMBED_DATASET:"embed_dataset",DIALOG_EMBED_WORKFLOW:"embed_workflow",DIALOG_EMBED_PAGE:"embed_page",DIALOG_EMBED_VISUALIZATION:"embed_visualization"};WYMeditor.editor.prototype.dialog=function(e,t,r){var s=this,n=s.uniqueStamp(),_=s.selected();if(e==WYMeditor.DIALOG_LINK){_&&($(s._options.hrefSelector).val($(_).attr(WYMeditor.HREF)),$(s._options.srcSelector).val($(_).attr(WYMeditor.SRC)),$(s._options.titleSelector).val($(_).attr(WYMeditor.TITLE)),$(s._options.altSelector).val($(_).attr(WYMeditor.ALT)));var d,c;_&&(void 0==(d=$(_).attr("href"))&&(d=""),void 0==(c=$(_).attr("title"))&&(c="")),show_modal("Create Link","<div><div><label id='link_attribute_label'>URL <span style='float: right; font-size: 90%'><a href='#' id='set_link_id'>Create in-page anchor</a></span></label><br><input type='text' class='wym_href' value='"+d+"' size='40' /></div><div><label>Title</label><br><input type='text' class='wym_title' value='"+c+"' size='40' /></div><div>",{"Make link":function(){var e=$(s._options.hrefSelector).val()||"",t=$(".wym_id").val()||"",a=$(s._options.titleSelector).val()||"";if(e||t){s._exec(WYMeditor.CREATE_LINK,n);var i=$("a[href="+n+"]",s._doc.body);i.attr(WYMeditor.HREF,e).attr(WYMeditor.TITLE,a).attr("id",t),0===i.text().indexOf("wym-")&&i.text(a)}hide_modal()},Cancel:function(){hide_modal()}},{},function(){$("#set_link_id").click(function(){$("#link_attribute_label").text("ID/Name");var e=$(".wym_href");e.addClass("wym_id").removeClass("wym_href"),_&&e.val($(_).attr("id")),$(this).remove()})})}if(e==WYMeditor.DIALOG_IMAGE)return s._selected_image&&($(s._options.dialogImageSelector+" "+s._options.srcSelector).val($(s._selected_image).attr(WYMeditor.SRC)),$(s._options.dialogImageSelector+" "+s._options.titleSelector).val($(s._selected_image).attr(WYMeditor.TITLE)),$(s._options.dialogImageSelector+" "+s._options.altSelector).val($(s._selected_image).attr(WYMeditor.ALT))),void show_modal("Image","<div class='row'><label>URL</label><br><input type='text' class='wym_src' value='' size='40' /></div><div class='row'><label>Alt text</label><br><input type='text' class='wym_alt' value='' size='40' /></div><div class='row'><label>Title</label><br><input type='text' class='wym_title' value='' size='40' /></div>",{Insert:function(){var e=$(s._options.srcSelector).val();e.length>0&&(s._exec(WYMeditor.INSERT_IMAGE,n),$("img[src$="+n+"]",s._doc.body).attr(WYMeditor.SRC,e).attr(WYMeditor.TITLE,$(s._options.titleSelector).val()).attr(WYMeditor.ALT,$(s._options.altSelector).val())),hide_modal()},Cancel:function(){hide_modal()}});if(e==WYMeditor.DIALOG_TABLE&&show_modal("Table","<div class='row'><label>Caption</label><br><input type='text' class='wym_caption' value='' size='40' /></div><div class='row'><label>Summary</label><br><input type='text' class='wym_summary' value='' size='40' /></div><div class='row'><label>Number Of Rows<br></label><input type='text' class='wym_rows' value='3' size='3' /></div><div class='row'><label>Number Of Cols<br></label><input type='text' class='wym_cols' value='2' size='3' /></div>",{Insert:function(){var e=$(s._options.rowsSelector).val(),t=$(s._options.colsSelector).val();if(e>0&&t>0){var a=s._doc.createElement(WYMeditor.TABLE),i=null,o=$(s._options.captionSelector).val();a.createCaption().innerHTML=o;for(var l=0;l<e;l++){i=a.insertRow(l);for(var r=0;r<t;r++)i.insertCell(r)}$(a).attr("summary",$(s._options.summarySelector).val());var n=$(s.findUp(s.container(),WYMeditor.MAIN_CONTAINERS)).get(0);n&&n.parentNode?$(n).after(a):$(s._doc.body).append(a)}hide_modal()},Cancel:function(){hide_modal()}}),e==l.DIALOG_HISTORY_LINK||e==l.DIALOG_DATASET_LINK||e==l.DIALOG_WORKFLOW_LINK||e==l.DIALOG_PAGE_LINK||e==l.DIALOG_VISUALIZATION_LINK){switch(e){case l.DIALOG_HISTORY_LINK:I=a(l.ITEM_HISTORY);break;case l.DIALOG_DATASET_LINK:I=a(l.ITEM_DATASET);break;case l.DIALOG_WORKFLOW_LINK:I=a(l.ITEM_WORKFLOW);break;case l.DIALOG_PAGE_LINK:I=a(l.ITEM_PAGE);break;case l.DIALOG_VISUALIZATION_LINK:I=a(l.ITEM_VISUALIZATION)}u=new o.default({url_base:I.list_ajax_url,dict_format:!0,embedded:!0});Galaxy.modal.show({title:"Insert Link to "+I.singular,body:$("<div/>").append(u.$el).append($("<div/>").append('<input id="make-importable" type="checkbox" checked/>').append("Make the selected "+I.plural.toLowerCase()+" accessible so that they can viewed by everyone.")),closing_events:!0,buttons:{Insert:function(){var e=!1;null!=$("#make-importable:checked").val()&&(e=!0);new Array;u.$("input[name=id]:checked").each(function(){var t=$(this).val();e&&i(I.controller,t,I.singular);var a=(get_name_and_link_url+t).replace("ITEM_CONTROLLER",I.controller);$.getJSON(a,function(e){s._exec(WYMeditor.CREATE_LINK,n);var a=$("a[href="+n+"]",s._doc.body).text();""==a||a==n?s.insert("<a href='"+e.link+"'>"+I.singular+" '"+e.name+"'</a>"):$("a[href="+n+"]",s._doc.body).attr(WYMeditor.HREF,e.link).attr(WYMeditor.TITLE,I.singular+t)})}),Galaxy.modal.hide()},Close:function(){Galaxy.modal.hide()}}})}if(e==l.DIALOG_EMBED_HISTORY||e==l.DIALOG_EMBED_DATASET||e==l.DIALOG_EMBED_WORKFLOW||e==l.DIALOG_EMBED_PAGE||e==l.DIALOG_EMBED_VISUALIZATION){var I;switch(e){case l.DIALOG_EMBED_HISTORY:I=a(l.ITEM_HISTORY);break;case l.DIALOG_EMBED_DATASET:I=a(l.ITEM_DATASET);break;case l.DIALOG_EMBED_WORKFLOW:I=a(l.ITEM_WORKFLOW);break;case l.DIALOG_EMBED_PAGE:I=a(l.ITEM_PAGE);break;case l.DIALOG_EMBED_VISUALIZATION:I=a(l.ITEM_VISUALIZATION)}var u=new o.default({url_base:I.list_ajax_url,dict_format:!0,embedded:!0});Galaxy.modal.show({title:"Insert Link to "+I.singular,body:$("<div/>").append(u.$el).append($("<div/>").append('<input id="make-importable" type="checkbox" checked/>').append("Make the selected "+I.plural.toLowerCase()+" accessible so that they can viewed by everyone.")),closing_events:!0,buttons:{Embed:function(){var e=!1;null!=$("#make-importable:checked").val()&&(e=!0),u.$("input[name=id]:checked").each(function(){var t=$(this).val(),a=$("label[for='"+t+"']:first").text();e&&i(I.controller,t,I.singular);var o=["<div id='",I.iclass+"-"+t,"' class='embedded-item ",I.singular.toLowerCase()," placeholder'>","<p class='title'>","Embedded Galaxy ",I.singular," '",a,"'","</p>","<p class='content'>","[Do not edit this block; Galaxy will fill it in with the annotated ",I.singular.toLowerCase()," when it is displayed.]","</p>","</div>"].join("");s.insert(o)}),Galaxy.modal.hide()},Close:function(){Galaxy.modal.hide()}}})}}});
\ No newline at end of file
+define("galaxy.pages",["exports","utils/localization","mvc/grid/grid-view","libs/jquery/jquery.form","libs/jquery/jstorage","libs/jquery/jquery.wymeditor","libs/jquery/jquery.autocomplete"],function(e,t,a){"use strict";function i(e){return e&&e.__esModule?e:{default:e}}function o(e){var t,a,i,o;switch(e){case n.ITEM_HISTORY:t="History",a="Histories",i="history",o="History";break;case n.ITEM_DATASET:t="Dataset",a="Datasets",i="dataset",o="HistoryDatasetAssociation";break;case n.ITEM_WORKFLOW:t="Workflow",a="Workflows",i="workflow",o="StoredWorkflow";break;case n.ITEM_PAGE:t="Page",a="Pages",i="page",o="Page";break;case n.ITEM_VISUALIZATION:t="Visualization",a="Visualizations",i="visualization",o="Visualization"}var l="list_"+a.toLowerCase()+"_for_selection";return{singular:t,plural:a,controller:i,iclass:o,list_ajax_url:list_objects_url.replace("LIST_ACTION",l)}}function l(e,t,a){var i=set_accessible_url.replace("ITEM_CONTROLLER",e);$.ajax({type:"POST",url:i,data:{id:t,accessible:"True"},error:function(){alert("Making "+a+" accessible failed")}})}Object.defineProperty(e,"__esModule",{value:!0}),e.default=function(){$(document).ajaxError(function(e,t){var a=t.responseText||t.statusText||"Could not connect to server";return show_modal("Server error",a,{"Ignore error":hide_modal}),!1}),$("[name=page_content]").wymeditor({skin:"galaxy",basePath:editor_base_path,iframeBasePath:iframe_base_path,boxHtml:"<table class='wym_box' width='100%' height='100%'><tr><td><div class='wym_area_top'>"+WYMeditor.TOOLS+"</div></td></tr><tr height='100%'><td><div class='wym_area_main' style='height: 100%;'>"+WYMeditor.IFRAME+WYMeditor.STATUS+"</div></div></td></tr></table>",toolsItems:[{name:"Bold",title:"Strong",css:"wym_tools_strong"},{name:"Italic",title:"Emphasis",css:"wym_tools_emphasis"},{name:"Superscript",title:(0,r.default)("Superscript"),css:"wym_tools_superscript"},{name:"Subscript",title:(0,r.default)("Subscript"),css:"wym_tools_subscript"},{name:"InsertOrderedList",title:"Ordered_List",css:"wym_tools_ordered_list"},{name:"InsertUnorderedList",title:"Unordered_List",css:"wym_tools_unordered_list"},{name:"Indent",title:"Indent",css:"wym_tools_indent"},{name:"Outdent",title:"Outdent",css:"wym_tools_outdent"},{name:"Undo",title:"Undo",css:"wym_tools_undo"},{name:"Redo",title:"Redo",css:"wym_tools_redo"},{name:"CreateLink",title:"Link",css:"wym_tools_link"},{name:"Unlink",title:"Unlink",css:"wym_tools_unlink"},{name:"InsertImage",title:"Image",css:"wym_tools_image"},{name:"InsertTable",title:"Table",css:"wym_tools_table"}]});var e=$.wymeditors(0),t=function(t){show_modal("Saving page","progress"),$.ajax({url:save_url,type:"POST",data:{id:page_id,content:e.xhtml(),annotations:JSON.stringify(new Object),_:"true"},success:function(){t()}})};$("#save-button").click(function(){t(function(){hide_modal()})}),$("#close-button").click(function(){window.document.location=page_list_url});var a=$("<div class='galaxy-page-editor-button'><a id='insert-galaxy-link' class='action-button popup' href='#'>Paragraph type</a></div>");$(".wym_area_top").append(a);var i={};$.each(e._options.containersItems,function(t,a){var o=a.name;i[a.title.replace("_"," ")]=function(){e.container(o)}}),make_popupmenu(a,i);var o=$("<div><a id='insert-galaxy-link' class='action-button popup' href='#'>Insert Link to Galaxy Object</a></div>").addClass("galaxy-page-editor-button");$(".wym_area_top").append(o),make_popupmenu(o,{"Insert History Link":function(){e.dialog(n.DIALOG_HISTORY_LINK)},"Insert Dataset Link":function(){e.dialog(n.DIALOG_DATASET_LINK)},"Insert Workflow Link":function(){e.dialog(n.DIALOG_WORKFLOW_LINK)},"Insert Page Link":function(){e.dialog(n.DIALOG_PAGE_LINK)},"Insert Visualization Link":function(){e.dialog(n.DIALOG_VISUALIZATION_LINK)}});var l=$("<div><a id='embed-galaxy-object' class='action-button popup' href='#'>Embed Galaxy Object</a></div>").addClass("galaxy-page-editor-button");$(".wym_area_top").append(l),make_popupmenu(l,{"Embed History":function(){e.dialog(n.DIALOG_EMBED_HISTORY)},"Embed Dataset":function(){e.dialog(n.DIALOG_EMBED_DATASET)},"Embed Workflow":function(){e.dialog(n.DIALOG_EMBED_WORKFLOW)},"Embed Visualization":function(){e.dialog(n.DIALOG_EMBED_VISUALIZATION)}})};var r=i(t),s=i(a),n={ITEM_HISTORY:"item_history",ITEM_DATASET:"item_dataset",ITEM_WORKFLOW:"item_workflow",ITEM_PAGE:"item_page",ITEM_VISUALIZATION:"item_visualization",DIALOG_HISTORY_LINK:"link_history",DIALOG_DATASET_LINK:"link_dataset",DIALOG_WORKFLOW_LINK:"link_workflow",DIALOG_PAGE_LINK:"link_page",DIALOG_VISUALIZATION_LINK:"link_visualization",DIALOG_EMBED_HISTORY:"embed_history",DIALOG_EMBED_DATASET:"embed_dataset",DIALOG_EMBED_WORKFLOW:"embed_workflow",DIALOG_EMBED_PAGE:"embed_page",DIALOG_EMBED_VISUALIZATION:"embed_visualization"};WYMeditor.editor.prototype.dialog=function(e,t,a){var i=this,r=i.uniqueStamp(),_=i.selected();if(e==WYMeditor.DIALOG_LINK){_&&($(i._options.hrefSelector).val($(_).attr(WYMeditor.HREF)),$(i._options.srcSelector).val($(_).attr(WYMeditor.SRC)),$(i._options.titleSelector).val($(_).attr(WYMeditor.TITLE)),$(i._options.altSelector).val($(_).attr(WYMeditor.ALT)));var d,c;_&&(void 0==(d=$(_).attr("href"))&&(d=""),void 0==(c=$(_).attr("title"))&&(c="")),show_modal("Create Link","<div><div><label id='link_attribute_label'>URL <span style='float: right; font-size: 90%'><a href='#' id='set_link_id'>Create in-page anchor</a></span></label><br><input type='text' class='wym_href' value='"+d+"' size='40' /></div><div><label>Title</label><br><input type='text' class='wym_title' value='"+c+"' size='40' /></div><div>",{"Make link":function(){var e=$(i._options.hrefSelector).val()||"",t=$(".wym_id").val()||"",a=$(i._options.titleSelector).val()||"";if(e||t){i._exec(WYMeditor.CREATE_LINK,r);var o=$("a[href="+r+"]",i._doc.body);o.attr(WYMeditor.HREF,e).attr(WYMeditor.TITLE,a).attr("id",t),0===o.text().indexOf("wym-")&&o.text(a)}hide_modal()},Cancel:function(){hide_modal()}},{},function(){$("#set_link_id").click(function(){$("#link_attribute_label").text("ID/Name");var e=$(".wym_href");e.addClass("wym_id").removeClass("wym_href"),_&&e.val($(_).attr("id")),$(this).remove()})})}if(e==WYMeditor.DIALOG_IMAGE)return i._selected_image&&($(i._options.dialogImageSelector+" "+i._options.srcSelector).val($(i._selected_image).attr(WYMeditor.SRC)),$(i._options.dialogImageSelector+" "+i._options.titleSelector).val($(i._selected_image).attr(WYMeditor.TITLE)),$(i._options.dialogImageSelector+" "+i._options.altSelector).val($(i._selected_image).attr(WYMeditor.ALT))),void show_modal("Image","<div class='row'><label>URL</label><br><input type='text' class='wym_src' value='' size='40' /></div><div class='row'><label>Alt text</label><br><input type='text' class='wym_alt' value='' size='40' /></div><div class='row'><label>Title</label><br><input type='text' class='wym_title' value='' size='40' /></div>",{Insert:function(){var e=$(i._options.srcSelector).val();e.length>0&&(i._exec(WYMeditor.INSERT_IMAGE,r),$("img[src$="+r+"]",i._doc.body).attr(WYMeditor.SRC,e).attr(WYMeditor.TITLE,$(i._options.titleSelector).val()).attr(WYMeditor.ALT,$(i._options.altSelector).val())),hide_modal()},Cancel:function(){hide_modal()}});if(e==WYMeditor.DIALOG_TABLE&&show_modal("Table","<div class='row'><label>Caption</label><br><input type='text' class='wym_caption' value='' size='40' /></div><div class='row'><label>Summary</label><br><input type='text' class='wym_summary' value='' size='40' /></div><div class='row'><label>Number Of Rows<br></label><input type='text' class='wym_rows' value='3' size='3' /></div><div class='row'><label>Number Of Cols<br></label><input type='text' class='wym_cols' value='2' size='3' /></div>",{Insert:function(){var e=$(i._options.rowsSelector).val(),t=$(i._options.colsSelector).val();if(e>0&&t>0){var a=i._doc.createElement(WYMeditor.TABLE),o=null,l=$(i._options.captionSelector).val();a.createCaption().innerHTML=l;for(var r=0;r<e;r++){o=a.insertRow(r);for(var s=0;s<t;s++)o.insertCell(s)}$(a).attr("summary",$(i._options.summarySelector).val());var n=$(i.findUp(i.container(),WYMeditor.MAIN_CONTAINERS)).get(0);n&&n.parentNode?$(n).after(a):$(i._doc.body).append(a)}hide_modal()},Cancel:function(){hide_modal()}}),e==n.DIALOG_HISTORY_LINK||e==n.DIALOG_DATASET_LINK||e==n.DIALOG_WORKFLOW_LINK||e==n.DIALOG_PAGE_LINK||e==n.DIALOG_VISUALIZATION_LINK){switch(e){case n.DIALOG_HISTORY_LINK:I=o(n.ITEM_HISTORY);break;case n.DIALOG_DATASET_LINK:I=o(n.ITEM_DATASET);break;case n.DIALOG_WORKFLOW_LINK:I=o(n.ITEM_WORKFLOW);break;case n.DIALOG_PAGE_LINK:I=o(n.ITEM_PAGE);break;case n.DIALOG_VISUALIZATION_LINK:I=o(n.ITEM_VISUALIZATION)}u=new s.default({url_base:I.list_ajax_url,dict_format:!0,embedded:!0});Galaxy.modal.show({title:"Insert Link to "+I.singular,body:$("<div/>").append(u.$el).append($("<div/>").append('<input id="make-importable" type="checkbox" checked/>').append("Make the selected "+I.plural.toLowerCase()+" accessible so that they can viewed by everyone.")),closing_events:!0,buttons:{Insert:function(){var e=!1;null!=$("#make-importable:checked").val()&&(e=!0);new Array;u.$("input[name=id]:checked").each(function(){var t=$(this).val();e&&l(I.controller,t,I.singular);var a=(get_name_and_link_url+t).replace("ITEM_CONTROLLER",I.controller);$.getJSON(a,function(e){i._exec(WYMeditor.CREATE_LINK,r);var a=$("a[href="+r+"]",i._doc.body).text();""==a||a==r?i.insert("<a href='"+e.link+"'>"+I.singular+" '"+e.name+"'</a>"):$("a[href="+r+"]",i._doc.body).attr(WYMeditor.HREF,e.link).attr(WYMeditor.TITLE,I.singular+t)})}),Galaxy.modal.hide()},Close:function(){Galaxy.modal.hide()}}})}if(e==n.DIALOG_EMBED_HISTORY||e==n.DIALOG_EMBED_DATASET||e==n.DIALOG_EMBED_WORKFLOW||e==n.DIALOG_EMBED_PAGE||e==n.DIALOG_EMBED_VISUALIZATION){var I;switch(e){case n.DIALOG_EMBED_HISTORY:I=o(n.ITEM_HISTORY);break;case n.DIALOG_EMBED_DATASET:I=o(n.ITEM_DATASET);break;case n.DIALOG_EMBED_WORKFLOW:I=o(n.ITEM_WORKFLOW);break;case n.DIALOG_EMBED_PAGE:I=o(n.ITEM_PAGE);break;case n.DIALOG_EMBED_VISUALIZATION:I=o(n.ITEM_VISUALIZATION)}var u=new s.default({url_base:I.list_ajax_url,dict_format:!0,embedded:!0});Galaxy.modal.show({title:"Insert Link to "+I.singular,body:$("<div/>").append(u.$el).append($("<div/>").append('<input id="make-importable" type="checkbox" checked/>').append("Make the selected "+I.plural.toLowerCase()+" accessible so that they can viewed by everyone.")),closing_events:!0,buttons:{Embed:function(){var e=!1;null!=$("#make-importable:checked").val()&&(e=!0),u.$("input[name=id]:checked").each(function(){var t=$(this).val(),a=$("label[for='"+t+"']:first").text();e&&l(I.controller,t,I.singular);var o=["<div id='",I.iclass+"-"+t,"' class='embedded-item ",I.singular.toLowerCase()," placeholder'>","<p class='title'>","Embedded Galaxy ",I.singular," '",a,"'","</p>","<p class='content'>","[Do not edit this block; Galaxy will fill it in with the annotated ",I.singular.toLowerCase()," when it is displayed.]","</p>","</div>"].join("");i.insert(o)}),Galaxy.modal.hide()},Close:function(){Galaxy.modal.hide()}}})}}});
\ No newline at end of file
diff --git a/static/scripts/layout/generic-nav-view.js b/static/scripts/layout/generic-nav-view.js
index 0ce8261b48d..083693f6c17 100644
--- a/static/scripts/layout/generic-nav-view.js
+++ b/static/scripts/layout/generic-nav-view.js
@@ -1 +1 @@
-define("layout/generic-nav-view",["exports","mvc/ui/ui-modal"],function(a,e){"use strict";Object.defineProperty(a,"__esModule",{value:!0});var o=function(a){return a&&a.__esModule?a:{default:a}}(e),i=Backbone.View.extend({initialize:function(){this.modal=null},makeModalIframe:function(a){var e=null,d=null,t='<iframe class="f-iframe fade in communication-iframe" src="'+(window.Galaxy.config.communication_server_host+":"+window.Galaxy.config.communication_server_port+("?username="+escape(window.Galaxy.user.attributes.username)+"&persistent_communication_rooms="+escape(window.Galaxy.config.persistent_communication_rooms)))+'"> </iframe>';return $(".chat-modal").length>0&&$(".chat-modal").remove(),i.modal=new o.default.View({body:t,height:350,width:600,closing_events:!0,title_separator:!1,cls:"ui-modal chat-modal"}),i.modal.show(),e=$(".chat-modal .modal-header"),d=$(".chat-modal .modal-body"),e.addClass("modal-header-body"),d.addClass("modal-header-body"),e.find("h4").remove(),e.removeAttr("min-height padding border"),e.append('<i class="fa fa-comment" aria-hidden="true" title="Communicate with other users"></i><i class="fa fa-expand expand-compress-modal" aria-hidden="true" title="Maximize"></i><i class="fa fa-times close-modal" aria-hidden="true" title="Close"></i>'),$(".close-modal").click(function(a){$(".chat-modal").css("display","none")}),$(".expand-compress-modal").click(function(a){$(".expand-compress-modal").hasClass("fa-expand")?($(".chat-modal .modal-dialog").width("1000px"),$(".chat-modal .modal-body").height("575px"),$(".expand-compress-modal").removeClass("fa-expand").addClass("fa-compress"),$(".expand-compress-modal").attr("title","Minimize"),$(".expand-compress-modal").css("margin-left","96.2%")):($(".chat-modal .modal-dialog").width("600px"),$(".chat-modal .modal-body").height("350px"),$(".expand-compress-modal").removeClass("fa-compress").addClass("fa-expand"),$(".expand-compress-modal").attr("title","Maximize"),$(".expand-compress-modal").css("margin-left","93.2%"))}),this},render:function(){return{id:"show-chat-online",icon:"fa-comment-o",tooltip:"Chat online",visible:!1,onclick:this.makeModalIframe}}});a.default={GenericNavView:i}});
\ No newline at end of file
+define("layout/generic-nav-view",["exports","utils/localization","mvc/ui/ui-modal"],function(a,e,o){"use strict";function i(a){return a&&a.__esModule?a:{default:a}}Object.defineProperty(a,"__esModule",{value:!0});var d=i(e),t=i(o),l=Backbone.View.extend({initialize:function(){this.modal=null},makeModalIframe:function(a){var e=null,o=null,i='<iframe class="f-iframe fade in communication-iframe" src="'+(window.Galaxy.config.communication_server_host+":"+window.Galaxy.config.communication_server_port+("?username="+escape(window.Galaxy.user.attributes.username)+"&persistent_communication_rooms="+escape(window.Galaxy.config.persistent_communication_rooms)))+'"> </iframe>';return $(".chat-modal").length>0&&$(".chat-modal").remove(),l.modal=new t.default.View({body:i,height:350,width:600,closing_events:!0,title_separator:!1,cls:"ui-modal chat-modal"}),l.modal.show(),e=$(".chat-modal .modal-header"),o=$(".chat-modal .modal-body"),e.addClass("modal-header-body"),o.addClass("modal-header-body"),e.find("h4").remove(),e.removeAttr("min-height padding border"),e.append('<i class="fa fa-comment" aria-hidden="true" title="Communicate with other users"></i><i class="fa fa-expand expand-compress-modal" aria-hidden="true" title="Maximize"></i><i class="fa fa-times close-modal" aria-hidden="true" title="Close"></i>'),$(".close-modal").click(function(a){$(".chat-modal").css("display","none")}),$(".expand-compress-modal").click(function(a){$(".expand-compress-modal").hasClass("fa-expand")?($(".chat-modal .modal-dialog").width("1000px"),$(".chat-modal .modal-body").height("575px"),$(".expand-compress-modal").removeClass("fa-expand").addClass("fa-compress"),$(".expand-compress-modal").attr("title","Minimize"),$(".expand-compress-modal").css("margin-left","96.2%")):($(".chat-modal .modal-dialog").width("600px"),$(".chat-modal .modal-body").height("350px"),$(".expand-compress-modal").removeClass("fa-compress").addClass("fa-expand"),$(".expand-compress-modal").attr("title","Maximize"),$(".expand-compress-modal").css("margin-left","93.2%"))}),this},render:function(){var a=this;return{id:"show-chat-online",icon:"fa-comment-o",tooltip:(0,d.default)("Chat online"),visible:!1,onclick:a.makeModalIframe}}});a.default={GenericNavView:l}});
\ No newline at end of file
diff --git a/static/scripts/layout/scratchbook.js b/static/scripts/layout/scratchbook.js
index e63155bd17a..286424824e3 100644
--- a/static/scripts/layout/scratchbook.js
+++ b/static/scripts/layout/scratchbook.js
@@ -1 +1 @@
-define("layout/scratchbook",["exports","mvc/ui/ui-frames","mvc/dataset/data","viz/visualization","viz/trackster","utils/localization"],function(t,e,a,i,n,o){"use strict";function l(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var s=l(e),r=l(a),c=l(i),d=l(n),u=l(o);t.default=Backbone.View.extend({initialize:function(t){var e=this;t=t||{},this.frames=new s.default.View({visible:!1}),this.setElement(this.frames.$el),this.buttonActive=t.collection.add({id:"enable-scratchbook",icon:"fa-th",tooltip:(0,u.default)("Enable/Disable Scratchbook"),onclick:function(){e.active=!e.active,e.buttonActive.set({toggle:e.active,show_note:e.active,note_cls:e.active&&"fa fa-check"}),!e.active&&e.frames.hide()},onbeforeunload:function(){if(e.frames.length()>0)return"You opened "+e.frames.length()+" frame(s) which will be lost."}}),this.buttonLoad=t.collection.add({id:"show-scratchbook",icon:"fa-eye",tooltip:(0,u.default)("Show/Hide Scratchbook"),show_note:!0,visible:!1,onclick:function(t){e.frames.visible?e.frames.hide():e.frames.show()}}),this.frames.on("add remove",function(){this.visible&&0==this.length()&&this.hide(),e.buttonLoad.set({note:this.length(),visible:this.length()>0})}).on("show hide ",function(){e.buttonLoad.set({toggle:this.visible,icon:this.visible&&"fa-eye"||"fa-eye-slash"})}),this.history_cache={}},addDataset:function(t){var e=this,a=null;if(Galaxy&&Galaxy.currHistoryPanel){var i=Galaxy.currHistoryPanel.collection.historyId;this.history_cache[i]={name:Galaxy.currHistoryPanel.model.get("name"),dataset_ids:[]},Galaxy.currHistoryPanel.collection.each(function(t){!t.get("deleted")&&t.get("visible")&&e.history_cache[i].dataset_ids.push(t.get("id"))})}var n=function(t,a){if(t){var i=e.history_cache[t.get("history_id")];if(i&&i.dataset_ids){var n=i.dataset_ids,o=n.indexOf(t.get("id"));if(-1!==o&&o+a>=0&&o+a<n.length)return n[o+a]}}},o=function(t,i,o){var l=n(t,i);l?e._loadDataset(l,function(t,e){a=t,o.model.set(e)}):o.model.trigger("change")};this._loadDataset(t,function(t,i){a=t,e.add(_.extend({menu:[{icon:"fa fa-chevron-circle-left",tooltip:"Previous in History",onclick:function(t){o(a,-1,t)},disabled:function(){return!n(a,-1)}},{icon:"fa fa-chevron-circle-right",tooltip:"Next in History",onclick:function(t){o(a,1,t)},disabled:function(){return!n(a,1)}}]},i))})},_loadDataset:function(t,e){var a=this,i=new r.default.Dataset({id:t});$.when(i.fetch()).then(function(){var n=_.find(["tabular","interval"],function(t){return-1!==i.get("data_type").indexOf(t)}),o=i.get("name"),l=a.history_cache[i.get("history_id")];l&&(o=l.name+": "+o),e(i,n?{title:o,url:null,content:r.default.createTabularDatasetChunkedView({model:new r.default.TabularDataset(i.toJSON()),embedded:!0,height:"100%"}).$el}:{title:o,url:Galaxy.root+"datasets/"+t+"/display/?preview=True",content:null})})},addTrackster:function(t){var e=this,a=new c.default.Visualization({id:t});$.when(a.fetch()).then(function(){var t=new d.default.TracksterUI(Galaxy.root),i={title:a.get("name"),type:"other",content:function(e){var i={container:e,name:a.get("title"),id:a.id,dbkey:a.get("dbkey"),stand_alone:!1},n=a.get("latest_revision"),o=n.config.view.drawables;_.each(o,function(t){t.dataset={hda_ldda:t.hda_ldda,id:t.dataset_id}}),view=t.create_visualization(i,n.config.viewport,n.config.view.drawables,n.config.bookmarks,!1)}};e.add(i)})},add:function(t){if("_blank"==t.target)window.open(t.url);else if("_top"==t.target||"_parent"==t.target||"_self"==t.target)window.location=t.url;else if(!this.active||t.noscratchbook){var e=$(window.parent.document).find("#galaxy_main");"galaxy_main"==t.target||"center"==t.target?0===e.length?window.location=t.url+(-1==t.url.indexOf("?")?"?":"&")+"use_panels=True":e.attr("src",t.url):window.location=t.url}else this.frames.add(t)}})});
\ No newline at end of file
+define("layout/scratchbook",["exports","mvc/ui/ui-frames","mvc/dataset/data","viz/visualization","viz/trackster","utils/localization"],function(t,e,a,i,n,o){"use strict";function l(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var s=l(e),r=l(a),c=l(i),d=l(n),u=l(o);t.default=Backbone.View.extend({initialize:function(t){var e=this;t=t||{},this.frames=new s.default.View({visible:!1}),this.setElement(this.frames.$el),this.buttonActive=t.collection.add({id:"enable-scratchbook",icon:"fa-th",tooltip:(0,u.default)("Enable/Disable Scratchbook"),onclick:function(){e.active=!e.active,e.buttonActive.set({toggle:e.active,show_note:e.active,note_cls:e.active&&"fa fa-check"}),!e.active&&e.frames.hide()},onbeforeunload:function(){if(e.frames.length()>0)return"You opened "+e.frames.length()+" frame(s) which will be lost."}}),this.buttonLoad=t.collection.add({id:"show-scratchbook",icon:"fa-eye",tooltip:(0,u.default)("Show/Hide Scratchbook"),show_note:!0,visible:!1,onclick:function(t){e.frames.visible?e.frames.hide():e.frames.show()}}),this.frames.on("add remove",function(){this.visible&&0==this.length()&&this.hide(),e.buttonLoad.set({note:this.length(),visible:this.length()>0})}).on("show hide ",function(){e.buttonLoad.set({toggle:this.visible,icon:this.visible&&"fa-eye"||"fa-eye-slash"})}),this.history_cache={}},addDataset:function(t){var e=this,a=null;if(Galaxy&&Galaxy.currHistoryPanel){var i=Galaxy.currHistoryPanel.collection.historyId;this.history_cache[i]={name:Galaxy.currHistoryPanel.model.get("name"),dataset_ids:[]},Galaxy.currHistoryPanel.collection.each(function(t){!t.get("deleted")&&t.get("visible")&&e.history_cache[i].dataset_ids.push(t.get("id"))})}var n=function(t,a){if(t){var i=e.history_cache[t.get("history_id")];if(i&&i.dataset_ids){var n=i.dataset_ids,o=n.indexOf(t.get("id"));if(-1!==o&&o+a>=0&&o+a<n.length)return n[o+a]}}},o=function(t,i,o){var l=n(t,i);l?e._loadDataset(l,function(t,e){a=t,o.model.set(e)}):o.model.trigger("change")};this._loadDataset(t,function(t,i){a=t,e.add(_.extend({menu:[{icon:"fa fa-chevron-circle-left",tooltip:(0,u.default)("Previous in History"),onclick:function(t){o(a,-1,t)},disabled:function(){return!n(a,-1)}},{icon:"fa fa-chevron-circle-right",tooltip:(0,u.default)("Next in History"),onclick:function(t){o(a,1,t)},disabled:function(){return!n(a,1)}}]},i))})},_loadDataset:function(t,e){var a=this,i=new r.default.Dataset({id:t});$.when(i.fetch()).then(function(){var n=_.find(["tabular","interval"],function(t){return-1!==i.get("data_type").indexOf(t)}),o=i.get("name"),l=a.history_cache[i.get("history_id")];l&&(o=l.name+": "+o),e(i,n?{title:o,url:null,content:r.default.createTabularDatasetChunkedView({model:new r.default.TabularDataset(i.toJSON()),embedded:!0,height:"100%"}).$el}:{title:o,url:Galaxy.root+"datasets/"+t+"/display/?preview=True",content:null})})},addTrackster:function(t){var e=this,a=new c.default.Visualization({id:t});$.when(a.fetch()).then(function(){var t=new d.default.TracksterUI(Galaxy.root),i={title:a.get("name"),type:"other",content:function(e){var i={container:e,name:a.get("title"),id:a.id,dbkey:a.get("dbkey"),stand_alone:!1},n=a.get("latest_revision"),o=n.config.view.drawables;_.each(o,function(t){t.dataset={hda_ldda:t.hda_ldda,id:t.dataset_id}}),view=t.create_visualization(i,n.config.viewport,n.config.view.drawables,n.config.bookmarks,!1)}};e.add(i)})},add:function(t){if("_blank"==t.target)window.open(t.url);else if("_top"==t.target||"_parent"==t.target||"_self"==t.target)window.location=t.url;else if(!this.active||t.noscratchbook){var e=$(window.parent.document).find("#galaxy_main");"galaxy_main"==t.target||"center"==t.target?0===e.length?window.location=t.url+(-1==t.url.indexOf("?")?"?":"&")+"use_panels=True":e.attr("src",t.url):window.location=t.url}else this.frames.add(t)}})});
\ No newline at end of file
diff --git a/static/scripts/mvc/collection/list-of-pairs-collection-creator.js b/static/scripts/mvc/collection/list-of-pairs-collection-creator.js
index 292c29f1ac0..bc2f3992a17 100644
--- a/static/scripts/mvc/collection/list-of-pairs-collection-creator.js
+++ b/static/scripts/mvc/collection/list-of-pairs-collection-creator.js
@@ -1 +1 @@
-define("mvc/collection/list-of-pairs-collection-creator",["exports","utils/levenshtein","utils/natural-sort","mvc/collection/base-creator","mvc/base-mvc","utils/localization","ui/hoverhighlight"],function(e,t,i,a,r,n){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}function l(e){function t(){return i.length||(i=[new RegExp(this.filters[0]),new RegExp(this.filters[1])]),i}(e=e||{}).createPair=e.createPair||function(e){var t=(e=e||{}).listA.splice(e.indexA,1)[0],i=e.listB.splice(e.indexB,1)[0],a=e.listB.indexOf(t),r=e.listA.indexOf(i);return-1!==a&&e.listB.splice(a,1),-1!==r&&e.listA.splice(r,1),this._pair(t,i,{silent:!0})};var i=[];return e.preprocessMatch=e.preprocessMatch||function(e){var i=t.call(this);return _.extend(e,{matchTo:e.matchTo.name.replace(i[0],""),possible:e.possible.name.replace(i[1],"")})},function(t){this.debug("autopair _strategy ---------------------------");var i,a=(t=t||{}).listA,r=t.listB,n=0,s={score:0,index:null},l=[];for(this.debug("starting list lens:",a.length,r.length),this.debug("bestMatch (starting):",JSON.stringify(s,null,"  "));n<a.length;){var o=a[n];for(s.score=0,i=0;i<r.length;i++){var d=r[i];if(this.debug(n+":"+o.name),this.debug(i+":"+d.name),a[n]!==r[i]&&(s=e.match.call(this,e.preprocessMatch.call(this,{matchTo:o,possible:d,index:i,bestMatch:s})),this.debug("bestMatch:",JSON.stringify(s,null,"  ")),1===s.score)){this.debug("breaking early due to perfect match");break}}var c=e.scoreThreshold.call(this);if(this.debug("scoreThreshold:",c),this.debug("bestMatch.score:",s.score),s.score>=c?l.push(e.createPair.call(this,{listA:a,indexA:n,listB:r,indexB:s.index})):n+=1,!a.length||!r.length)return l}return this.debug("paired:",JSON.stringify(l,null,"  ")),this.debug("autopair _strategy ---------------------------"),l}}Object.defineProperty(e,"__esModule",{value:!0});var o=s(t),d=s(i),c=s(a),u=s(r),h=s(n),p=Backbone.View.extend(u.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"dataset paired",initialize:function(e){this.pair=e.pair||{}},template:_.template(['<span class="forward-dataset-name flex-column"><%- pair.forward.name %></span>','<span class="pair-name-column flex-column">','<span class="pair-name"><%- pair.name %></span>',"</span>",'<span class="reverse-dataset-name flex-column"><%- pair.reverse.name %></span>'].join("")),render:function(){this.dragStartHandler=_.bind(this._dragstart,this),this.dragEndHandler=_.bind(this._dragend,this);var e=this.$el.attr("draggable",!0).data("pair",this.pair).html(this.template({pair:this.pair})).addClass("flex-column-container").get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this},events:{dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(e){e.currentTarget.style.opacity="0.4",e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.pair)),this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(e){e.currentTarget.style.opacity="1.0",this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"PairView("+this.pair.name+")"}}),f=Backbone.View.extend(u.default.LoggableMixin).extend(c.default.CollectionCreatorMixin).extend({_logNamespace:"collections",className:"list-of-pairs-collection-creator collection-creator flex-row-container",initialize:function(e){this.metric("PairedCollectionCreator.initialize",e),e=_.defaults(e,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:!0,strategy:"lcs",matchPercentage:.9,twoPassAutopairing:!0}),this.initialList=e.datasets,this.historyId=e.historyId,this.filters=this.commonFilters[e.filters]||this.commonFilters[this.DEFAULT_FILTERS],_.isArray(e.filters)&&(this.filters=e.filters),this.automaticallyPair=e.automaticallyPair,this.strategy=this.strategies[e.strategy]||this.strategies[this.DEFAULT_STRATEGY],_.isFunction(e.strategy)&&(this.strategy=e.strategy),this.matchPercentage=e.matchPercentage,this.twoPassAutopairing=e.twoPassAutopairing,this.removeExtensions=!0,this.oncancel=e.oncancel,this.oncreate=e.oncreate,this.autoscrollDist=e.autoscrollDist||24,this.unpairedPanelHidden=!1,this.pairedPanelHidden=!1,this.$dragging=null,this.blocking=!1,this._setUpCommonSettings(e),this._setUpBehaviors(),this._dataSetUp()},commonFilters:{illumina:["_1","_2"],Rs:["_R1","_R2"]},DEFAULT_FILTERS:"illumina",strategies:{simple:"autopairSimple",lcs:"autopairLCS",levenshtein:"autopairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[],this.unpaired=[],this.selectedIds=[],this._sortInitialList(),this._ensureIds(),this.unpaired=this.initialList.slice(0),this.automaticallyPair&&(this.autoPair(),this.once("rendered:initial",function(){this.trigger("autopair")}))},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(e){return e.sort(function(e,t){return(0,d.default)(e.name,t.name)}),e},_ensureIds:function(){return this.initialList.forEach(function(e){e.hasOwnProperty("id")||(e.id=_.uniqueId())}),this.initialList},_splitByFilters:function(){function e(e,t){return t.test(e.name)}var t=this.filters.map(function(e){return new RegExp(e)}),i=[[],[]];return this.unpaired.forEach(function(a){t.forEach(function(t,r){e(a,t)&&i[r].push(a)})}),i},_addToUnpaired:function(e){var t=this;this.unpaired.splice(function i(a,r){if(a===r)return a;var n=Math.floor((r-a)/2)+a,s=(0,d.default)(e.name,t.unpaired[n].name);if(s<0)return i(a,n);if(s>0)return i(n+1,r);for(;t.unpaired[n]&&t.unpaired[n].name===e.name;)n++;return n}(0,this.unpaired.length),0,e)},autoPair:function(e){var t=this._splitByFilters(),i=[];return this.twoPassAutopairing&&(i=this.autopairSimple({listA:t[0],listB:t[1]}),t=this._splitByFilters()),e=e||this.strategy,t=this._splitByFilters(),i=i.concat(this[e].call(this,{listA:t[0],listB:t[1]}))},autopairSimple:l({scoreThreshold:function(){return.6},match:function(e){return(e=e||{}).matchTo===e.possible?{index:e.index,score:1}:e.bestMatch}}),autopairLevenshtein:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=1-(0,o.default)(e.matchTo,e.possible)/Math.max(e.matchTo.length,e.possible.length);return t>e.bestMatch.score?{index:e.index,score:t}:e.bestMatch}}),autopairLCS:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=this._naiveStartingAndEndingLCS(e.matchTo,e.possible).length/Math.max(e.matchTo.length,e.possible.length);return t>e.bestMatch.score?{index:e.index,score:t}:e.bestMatch}}),_naiveStartingAndEndingLCS:function(e,t){for(var i="",a="",r=0,n=0;r<e.length&&r<t.length&&e[r]===t[r];)i+=e[r],r+=1;if(r===e.length)return e;if(r===t.length)return t;for(r=e.length-1,n=t.length-1;r>=0&&n>=0&&e[r]===t[n];)a=[e[r],a].join(""),r-=1,n-=1;return i+a},_pair:function(e,t,i){i=i||{},this.debug("_pair:",e,t);var a=this._createPair(e,t,i.name);return this.paired.push(a),this.unpaired=_.without(this.unpaired,e,t),i.silent||this.trigger("pair:new",a),a},_createPair:function(e,t,i){if(!e||!t||e===t)throw new Error("Bad pairing: "+[JSON.stringify(e),JSON.stringify(t)]);return i=i||this._guessNameForPair(e,t),{forward:e,name:i,reverse:t}},_guessNameForPair:function(e,t,i){i=void 0!==i?i:this.removeExtensions;var a=e.name,r=t.name,n=this._naiveStartingAndEndingLCS(a.replace(new RegExp(this.filters[0]),""),r.replace(new RegExp(this.filters[1]),""));if(i){var s=n.lastIndexOf(".");if(s>0){var l=n.slice(s,n.length);n=n.replace(l,""),a=a.replace(l,""),r=r.replace(l,"")}}return n||a+" & "+r},_unpair:function(e,t){if(t=t||{},!e)throw new Error("Bad pair: "+JSON.stringify(e));return this.paired=_.without(this.paired,e),this._addToUnpaired(e.forward),this._addToUnpaired(e.reverse),t.silent||this.trigger("pair:unpair",[e]),e},unpairAll:function(){for(var e=[];this.paired.length;)e.push(this._unpair(this.paired[0],{silent:!0}));this.trigger("pair:unpair",e)},_pairToJSON:function(e,t){return t=t||"hda",{collection_type:"paired",src:"new_collection",name:e.name,element_identifiers:[{name:"forward",id:e.forward.id,src:t},{name:"reverse",id:e.reverse.id,src:t}]}},createList:function(e){var t=this,i=Galaxy.root+"api/histories/"+this.historyId+"/contents/dataset_collections",a={type:"dataset_collection",collection_type:"list:paired",hide_source_items:t.hideOriginals||!1,name:_.escape(e||t.$(".collection-name").val()),element_identifiers:t.paired.map(function(e){return t._pairToJSON(e)})};return 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See: ",'<a href="https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions"',' target="_blank">MDN\'s JavaScript Regular Expression Tutorial</a>. ',"Note: forward slashes (\\) are not needed.","</li>","<li>Clearing the filters by clicking the ",'<i data-target=".clear-filters-link">"Clear filters" link</i>.',"</li>","</ul>"].join("")),"</p>","<p>",(0,h.default)(["To unpair individual dataset pairs, click the ",'<i data-target=".unpair-btn">unpair buttons ( <span class="fa fa-unlink"></span> )</i>. 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',"(Note: you do not have to pair all unpaired datasets to finish.)"].join("")),"</p>"].join(""))})}),m=function(e,t){var i,a=jQuery.Deferred();if(t=_.defaults(t||{},{datasets:e,oncancel:function(){Galaxy.modal.hide(),a.reject("cancelled")},oncreate:function(e,t){Galaxy.modal.hide(),a.resolve(t)}}),!window.Galaxy||!Galaxy.modal)throw new Error("Galaxy or Galaxy.modal not found");return i=new f(t),Galaxy.modal.show({title:"Create a collection of paired datasets",body:i.$el,width:"80%",height:"800px",closing_events:!0}),i.render(),window.creator=i,a};e.default={PairedCollectionCreator:f,pairedCollectionCreatorModal:m,createListOfPairsCollection:function(e,t){var i=e.toJSON();return m(i,{historyId:e.historyId,defaultHideSourceItems:t})}}});
\ No newline at end of file
+define("mvc/collection/list-of-pairs-collection-creator",["exports","utils/levenshtein","utils/natural-sort","mvc/collection/base-creator","mvc/base-mvc","utils/localization","ui/hoverhighlight"],function(e,t,i,a,r,n){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}function l(e){function t(){return i.length||(i=[new RegExp(this.filters[0]),new RegExp(this.filters[1])]),i}(e=e||{}).createPair=e.createPair||function(e){var t=(e=e||{}).listA.splice(e.indexA,1)[0],i=e.listB.splice(e.indexB,1)[0],a=e.listB.indexOf(t),r=e.listA.indexOf(i);return-1!==a&&e.listB.splice(a,1),-1!==r&&e.listA.splice(r,1),this._pair(t,i,{silent:!0})};var i=[];return e.preprocessMatch=e.preprocessMatch||function(e){var i=t.call(this);return _.extend(e,{matchTo:e.matchTo.name.replace(i[0],""),possible:e.possible.name.replace(i[1],"")})},function(t){this.debug("autopair _strategy ---------------------------");var i,a=(t=t||{}).listA,r=t.listB,n=0,s={score:0,index:null},l=[];for(this.debug("starting list lens:",a.length,r.length),this.debug("bestMatch (starting):",JSON.stringify(s,null,"  "));n<a.length;){var o=a[n];for(s.score=0,i=0;i<r.length;i++){var d=r[i];if(this.debug(n+":"+o.name),this.debug(i+":"+d.name),a[n]!==r[i]&&(s=e.match.call(this,e.preprocessMatch.call(this,{matchTo:o,possible:d,index:i,bestMatch:s})),this.debug("bestMatch:",JSON.stringify(s,null,"  ")),1===s.score)){this.debug("breaking early due to perfect match");break}}var c=e.scoreThreshold.call(this);if(this.debug("scoreThreshold:",c),this.debug("bestMatch.score:",s.score),s.score>=c?l.push(e.createPair.call(this,{listA:a,indexA:n,listB:r,indexB:s.index})):n+=1,!a.length||!r.length)return l}return this.debug("paired:",JSON.stringify(l,null,"  ")),this.debug("autopair _strategy ---------------------------"),l}}Object.defineProperty(e,"__esModule",{value:!0});var o=s(t),d=s(i),c=s(a),u=s(r),h=s(n),p=Backbone.View.extend(u.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"dataset paired",initialize:function(e){this.pair=e.pair||{}},template:_.template(['<span class="forward-dataset-name flex-column"><%- pair.forward.name %></span>','<span class="pair-name-column flex-column">','<span class="pair-name"><%- pair.name %></span>',"</span>",'<span class="reverse-dataset-name flex-column"><%- pair.reverse.name %></span>'].join("")),render:function(){this.dragStartHandler=_.bind(this._dragstart,this),this.dragEndHandler=_.bind(this._dragend,this);var e=this.$el.attr("draggable",!0).data("pair",this.pair).html(this.template({pair:this.pair})).addClass("flex-column-container").get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this},events:{dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(e){e.currentTarget.style.opacity="0.4",e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.pair)),this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(e){e.currentTarget.style.opacity="1.0",this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"PairView("+this.pair.name+")"}}),f=Backbone.View.extend(u.default.LoggableMixin).extend(c.default.CollectionCreatorMixin).extend({_logNamespace:"collections",className:"list-of-pairs-collection-creator collection-creator flex-row-container",initialize:function(e){this.metric("PairedCollectionCreator.initialize",e),e=_.defaults(e,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:!0,strategy:"lcs",matchPercentage:.9,twoPassAutopairing:!0}),this.initialList=e.datasets,this.historyId=e.historyId,this.filters=this.commonFilters[e.filters]||this.commonFilters[this.DEFAULT_FILTERS],_.isArray(e.filters)&&(this.filters=e.filters),this.automaticallyPair=e.automaticallyPair,this.strategy=this.strategies[e.strategy]||this.strategies[this.DEFAULT_STRATEGY],_.isFunction(e.strategy)&&(this.strategy=e.strategy),this.matchPercentage=e.matchPercentage,this.twoPassAutopairing=e.twoPassAutopairing,this.removeExtensions=!0,this.oncancel=e.oncancel,this.oncreate=e.oncreate,this.autoscrollDist=e.autoscrollDist||24,this.unpairedPanelHidden=!1,this.pairedPanelHidden=!1,this.$dragging=null,this.blocking=!1,this._setUpCommonSettings(e),this._setUpBehaviors(),this._dataSetUp()},commonFilters:{illumina:["_1","_2"],Rs:["_R1","_R2"]},DEFAULT_FILTERS:"illumina",strategies:{simple:"autopairSimple",lcs:"autopairLCS",levenshtein:"autopairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[],this.unpaired=[],this.selectedIds=[],this._sortInitialList(),this._ensureIds(),this.unpaired=this.initialList.slice(0),this.automaticallyPair&&(this.autoPair(),this.once("rendered:initial",function(){this.trigger("autopair")}))},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(e){return e.sort(function(e,t){return(0,d.default)(e.name,t.name)}),e},_ensureIds:function(){return this.initialList.forEach(function(e){e.hasOwnProperty("id")||(e.id=_.uniqueId())}),this.initialList},_splitByFilters:function(){function e(e,t){return t.test(e.name)}var t=this.filters.map(function(e){return new RegExp(e)}),i=[[],[]];return this.unpaired.forEach(function(a){t.forEach(function(t,r){e(a,t)&&i[r].push(a)})}),i},_addToUnpaired:function(e){var t=this;this.unpaired.splice(function i(a,r){if(a===r)return a;var n=Math.floor((r-a)/2)+a,s=(0,d.default)(e.name,t.unpaired[n].name);if(s<0)return i(a,n);if(s>0)return i(n+1,r);for(;t.unpaired[n]&&t.unpaired[n].name===e.name;)n++;return n}(0,this.unpaired.length),0,e)},autoPair:function(e){var t=this._splitByFilters(),i=[];return this.twoPassAutopairing&&(i=this.autopairSimple({listA:t[0],listB:t[1]}),t=this._splitByFilters()),e=e||this.strategy,t=this._splitByFilters(),i=i.concat(this[e].call(this,{listA:t[0],listB:t[1]}))},autopairSimple:l({scoreThreshold:function(){return.6},match:function(e){return(e=e||{}).matchTo===e.possible?{index:e.index,score:1}:e.bestMatch}}),autopairLevenshtein:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=1-(0,o.default)(e.matchTo,e.possible)/Math.max(e.matchTo.length,e.possible.length);return t>e.bestMatch.score?{index:e.index,score:t}:e.bestMatch}}),autopairLCS:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=this._naiveStartingAndEndingLCS(e.matchTo,e.possible).length/Math.max(e.matchTo.length,e.possible.length);return t>e.bestMatch.score?{index:e.index,score:t}:e.bestMatch}}),_naiveStartingAndEndingLCS:function(e,t){for(var i="",a="",r=0,n=0;r<e.length&&r<t.length&&e[r]===t[r];)i+=e[r],r+=1;if(r===e.length)return e;if(r===t.length)return t;for(r=e.length-1,n=t.length-1;r>=0&&n>=0&&e[r]===t[n];)a=[e[r],a].join(""),r-=1,n-=1;return i+a},_pair:function(e,t,i){i=i||{},this.debug("_pair:",e,t);var a=this._createPair(e,t,i.name);return this.paired.push(a),this.unpaired=_.without(this.unpaired,e,t),i.silent||this.trigger("pair:new",a),a},_createPair:function(e,t,i){if(!e||!t||e===t)throw new Error("Bad pairing: "+[JSON.stringify(e),JSON.stringify(t)]);return i=i||this._guessNameForPair(e,t),{forward:e,name:i,reverse:t}},_guessNameForPair:function(e,t,i){i=void 0!==i?i:this.removeExtensions;var a=e.name,r=t.name,n=this._naiveStartingAndEndingLCS(a.replace(new RegExp(this.filters[0]),""),r.replace(new RegExp(this.filters[1]),""));if(i){var s=n.lastIndexOf(".");if(s>0){var l=n.slice(s,n.length);n=n.replace(l,""),a=a.replace(l,""),r=r.replace(l,"")}}return n||a+" & "+r},_unpair:function(e,t){if(t=t||{},!e)throw new Error("Bad pair: "+JSON.stringify(e));return this.paired=_.without(this.paired,e),this._addToUnpaired(e.forward),this._addToUnpaired(e.reverse),t.silent||this.trigger("pair:unpair",[e]),e},unpairAll:function(){for(var e=[];this.paired.length;)e.push(this._unpair(this.paired[0],{silent:!0}));this.trigger("pair:unpair",e)},_pairToJSON:function(e,t){return t=t||"hda",{collection_type:"paired",src:"new_collection",name:e.name,element_identifiers:[{name:"forward",id:e.forward.id,src:t},{name:"reverse",id:e.reverse.id,src:t}]}},createList:function(e){var t=this,i=Galaxy.root+"api/histories/"+this.historyId+"/contents/dataset_collections",a={type:"dataset_collection",collection_type:"list:paired",hide_source_items:t.hideOriginals||!1,name:_.escape(e||t.$(".collection-name").val()),element_identifiers:t.paired.map(function(e){return t._pairToJSON(e)})};return t.blocking=!0,jQuery.ajax(i,{type:"POST",contentType:"application/json",dataType:"json",data:JSON.stringify(a)}).always(function(){t.blocking=!1}).fail(function(e,i,a){t._ajaxErrHandler(e,i,a)}).done(function(e,i,a){t.trigger("collection:created",e,i,a),t.metric("collection:created",e),"function"==typeof t.oncreate&&t.oncreate.call(this,e,i,a)})},_ajaxErrHandler:function(e,t,i){this.error(e,t,i);var a=this,r=(0,h.default)("An error occurred while creating this collection");e&&(0===e.readyState&&0===e.status?r+=": "+(0,h.default)("Galaxy could not be reached and may be updating.")+(0,h.default)(" Try again in a few minutes."):e.responseJSON?r+="<br /><pre>"+JSON.stringify(e.responseJSON)+"</pre>":r+=": "+i),a._showAlert(r,"alert-danger")},render:function(e,t){return this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var i=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend($(this.templates.helpContent()));return this._renderFilters(),i},_renderFilters:function(){return this.$(".forward-column .column-header input").val(this.filters[0]).add(this.$(".reverse-column .column-header input").val(this.filters[1]))},_renderMiddle:function(e,t){var i=this.$(".middle").empty().html(this.templates.middle());return this.unpairedPanelHidden?this.$(".unpaired-columns").hide():this.pairedPanelHidden&&this.$(".paired-columns").hide(),this._renderUnpaired(),this._renderPaired(),i},_renderUnpaired:function(e,t){var i,a,r=this,n=[],s=this._splitByFilters();this.$(".forward-column .title").text([s[0].length,(0,h.default)("unpaired forward")].join(" ")),this.$(".forward-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-s[0].length)),this.$(".reverse-column .title").text([s[1].length,(0,h.default)("unpaired reverse")].join(" ")),this.$(".reverse-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-s[1].length)),this.$(".unpaired-columns .column-datasets").empty(),this.$(".autopair-link").toggle(0!==this.unpaired.length),0!==this.unpaired.length?(a=s[1].map(function(e,t){return void 0!==s[0][t]&&s[0][t]!==e&&n.push(r._renderPairButton()),r._renderUnpairedDataset(e)}),(i=s[0].map(function(e){return r._renderUnpairedDataset(e)})).length||a.length?(this.$(".unpaired-columns .forward-column .column-datasets").append(i).add(this.$(".unpaired-columns .paired-column .column-datasets").append(n)).add(this.$(".unpaired-columns .reverse-column .column-datasets").append(a)),this._adjUnpairedOnScrollbar()):this._renderUnpairedNotShown()):this._renderUnpairedEmpty()},_renderUnpairedDisplayStr:function(e){return["(",e," ",(0,h.default)("filtered out"),")"].join("")},_renderUnpairedDataset:function(e){return $("<li/>").attr("id","dataset-"+e.id).addClass("dataset unpaired").attr("draggable",!0).addClass(e.selected?"selected":"").append($("<span/>").addClass("dataset-name").text(e.name)).data("dataset",e)},_renderPairButton:function(){return $("<li/>").addClass("dataset unpaired").append($("<span/>").addClass("dataset-name").text((0,h.default)("Pair these datasets")))},_renderUnpairedEmpty:function(){var e=$('<div class="empty-message"></div>').text("("+(0,h.default)("no remaining unpaired datasets")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_renderUnpairedNotShown:function(){var e=$('<div class="empty-message"></div>').text("("+(0,h.default)("no datasets were found matching the current filters")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_adjUnpairedOnScrollbar:function(){var e=this.$(".unpaired-columns").last(),t=this.$(".unpaired-columns .reverse-column .dataset").first();if(t.length){var i=e.offset().left+e.outerWidth(),a=t.offset().left+t.outerWidth(),r=Math.floor(i)-Math.floor(a);this.$(".unpaired-columns .forward-column").css("margin-left",r>0?r:0)}},_renderPaired:function(e,t){if(this.$(".paired-column-title .title").text([this.paired.length,(0,h.default)("paired")].join(" ")),this.$(".unpair-all-link").toggle(0!==this.paired.length),0!==this.paired.length){this.$(".remove-extensions-link").show(),this.$(".paired-columns .column-datasets").empty();var i=this;this.paired.forEach(function(e,t){var a=new p({pair:e});i.$(".paired-columns .column-datasets").append(a.render().$el).append(['<button class="unpair-btn">','<span class="fa fa-unlink" title="',(0,h.default)("Unpair"),'"></span>',"</button>"].join(""))})}else this._renderPairedEmpty()},_renderPairedEmpty:function(){var e=$('<div class="empty-message"></div>').text("("+(0,h.default)("no paired datasets yet")+")");return this.$(".paired-columns .column-datasets").empty().prepend(e),e},footerSettings:{".hide-originals":"hideOriginals",".remove-extensions":"removeExtensions"},_addPluginComponents:function(){this._chooseFiltersPopover(".choose-filters-link"),this.$(".help-content i").hoverhighlight(".collection-creator","rgba( 64, 255, 255, 1.0 )")},_chooseFiltersPopover:function(e){function t(e,t){return['<button class="filter-choice btn" ','data-forward="',e,'" data-reverse="',t,'">',(0,h.default)("Forward"),": ",e,", ",(0,h.default)("Reverse"),": ",t,"</button>"].join("")}var i=$(_.template(['<div class="choose-filters">','<div class="help">',(0,h.default)("Choose from the following filters to change which unpaired reads are shown in the display"),":</div>",_.values(this.commonFilters).map(function(e){return t(e[0],e[1])}).join(""),"</div>"].join(""))({}));return this.$(e).popover({container:".collection-creator",placement:"bottom",html:!0,content:i})},_validationWarning:function(e,t){"name"===e&&(e=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),t?(e=e||this.$(".validation-warning")).removeClass("validation-warning"):e.addClass("validation-warning")},_setUpBehaviors:function(){return this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("pair:new",function(){this._renderUnpaired(),this._renderPaired(),this.$(".paired-columns").scrollTop(8e6)}),this.on("pair:unpair",function(e){this._renderUnpaired(),this._renderPaired(),this.splitView()}),this.on("filter-change",function(){this.filters=[this.$(".forward-unpaired-filter input").val(),this.$(".reverse-unpaired-filter input").val()],this.metric("filter-change",this.filters),this._renderFilters(),this._renderUnpaired()}),this.on("autopair",function(){this._renderUnpaired(),this._renderPaired();var e,t=null;this.paired.length?(t="alert-success",e=this.paired.length+" "+(0,h.default)("pairs created"),this.unpaired.length||(e+=": "+(0,h.default)("all datasets have been successfully paired"),this.hideUnpaired(),this.$(".collection-name").focus())):e=(0,h.default)(["Could not automatically create any pairs from the given dataset names.","You may want to choose or enter different filters and try auto-pairing again.","Close this message using the X on the right to view more help."].join(" ")),this._showAlert(e,t)}),this},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .forward-column .column-title":"_clickShowOnlyUnpaired","click .reverse-column .column-title":"_clickShowOnlyUnpaired","click .unpair-all-link":"_clickUnpairAll","change .forward-unpaired-filter input":function(e){this.trigger("filter-change")},"focus .forward-unpaired-filter input":function(e){$(e.currentTarget).select()},"click .autopair-link":"_clickAutopair","click .choose-filters .filter-choice":"_clickFilterChoice","click .clear-filters-link":"_clearFilters","change .reverse-unpaired-filter input":function(e){this.trigger("filter-change")},"focus .reverse-unpaired-filter input":function(e){$(e.currentTarget).select()},"click .forward-column .dataset.unpaired":"_clickUnpairedDataset","click .reverse-column .dataset.unpaired":"_clickUnpairedDataset","click .paired-column .dataset.unpaired":"_clickPairRow","click .unpaired-columns":"clearSelectedUnpaired","mousedown .unpaired-columns .dataset":"_mousedownUnpaired","click .paired-column-title":"_clickShowOnlyPaired","mousedown .flexible-partition-drag":"_startPartitionDrag","click .paired-columns .dataset.paired":"selectPair","click .paired-columns":"clearSelectedPaired","click .paired-columns .pair-name":"_clickPairName","click .unpair-btn":"_clickUnpair","dragover .paired-columns .column-datasets":"_dragoverPairedColumns","drop .paired-columns .column-datasets":"_dropPairedColumns","pair.dragstart .paired-columns .column-datasets":"_pairDragstart","pair.dragend   .paired-columns .column-datasets":"_pairDragend","change .remove-extensions":function(e){this.toggleExtensions()},"change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","change .hide-originals":"_changeHideOriginals","click .cancel-create":"_cancelCreate","click .create-collection":"_clickCreate"},_clickShowOnlyUnpaired:function(e){this.$(".paired-columns").is(":visible")?this.hidePaired():this.splitView()},_clickShowOnlyPaired:function(e){this.$(".unpaired-columns").is(":visible")?this.hideUnpaired():this.splitView()},hideUnpaired:function(e,t){this.unpairedPanelHidden=!0,this.pairedPanelHidden=!1,this._renderMiddle(e,t)},hidePaired:function(e,t){this.unpairedPanelHidden=!1,this.pairedPanelHidden=!0,this._renderMiddle(e,t)},splitView:function(e,t){return this.unpairedPanelHidden=this.pairedPanelHidden=!1,this._renderMiddle(e,t),this},_clickUnpairAll:function(e){this.metric("unpairAll"),this.unpairAll()},_clickAutopair:function(e){var t=this.autoPair();this.metric("autopair",t.length,this.unpaired.length),this.trigger("autopair")},_clickFilterChoice:function(e){var t=$(e.currentTarget);this.$(".forward-unpaired-filter input").val(t.data("forward")),this.$(".reverse-unpaired-filter input").val(t.data("reverse")),this._hideChooseFilters(),this.trigger("filter-change")},_hideChooseFilters:function(){this.$(".choose-filters-link").popover("hide"),this.$(".popover").css("display","none")},_clearFilters:function(e){this.$(".forward-unpaired-filter input").val(""),this.$(".reverse-unpaired-filter input").val(""),this.trigger("filter-change")},_clickUnpairedDataset:function(e){return e.stopPropagation(),this.toggleSelectUnpaired($(e.currentTarget))},toggleSelectUnpaired:function(e,t){t=t||{};var i=e.data("dataset"),a=void 0!==t.force?t.force:!e.hasClass("selected");return e.length&&void 0!==i?(a?(e.addClass("selected"),t.waitToPair||this.pairAllSelected()):e.removeClass("selected"),e):e},pairAllSelected:function(e){e=e||{};var t=this,i=[],a=[],r=[];return t.$(".unpaired-columns .forward-column .dataset.selected").each(function(){i.push($(this).data("dataset"))}),t.$(".unpaired-columns .reverse-column .dataset.selected").each(function(){a.push($(this).data("dataset"))}),i.length=a.length=Math.min(i.length,a.length),i.forEach(function(e,i){try{r.push(t._pair(e,a[i],{silent:!0}))}catch(e){t.error(e)}}),r.length&&!e.silent&&this.trigger("pair:new",r),r},clearSelectedUnpaired:function(){this.$(".unpaired-columns .dataset.selected").removeClass("selected")},_mousedownUnpaired:function(e){if(e.shiftKey){var t=this,i=$(e.target).addClass("selected"),a=function(e){t.$(e.target).filter(".dataset").addClass("selected")};i.parent().on("mousemove",a),$(document).one("mouseup",function(e){i.parent().off("mousemove",a),t.pairAllSelected()})}},_clickPairRow:function(e){var t=$(e.currentTarget).index(),i=$(".unpaired-columns .forward-column .dataset").eq(t).data("dataset"),a=$(".unpaired-columns .reverse-column .dataset").eq(t).data("dataset");this._pair(i,a)},_startPartitionDrag:function(e){function t(e){var t=e.pageY-a;i.adjPartition(t)||$("body").trigger("mouseup"),i._adjUnpairedOnScrollbar(),a+=t}var i=this,a=e.pageY;$("body").css("cursor","ns-resize"),i.$(".flexible-partition-drag").css("color","black"),$("body").mousemove(t),$("body").one("mouseup",function(e){i.$(".flexible-partition-drag").css("color",""),$("body").css("cursor","").unbind("mousemove",t)})},adjPartition:function(e){var t=this.$(".unpaired-columns"),i=this.$(".paired-columns"),a=parseInt(t.css("height"),10),r=parseInt(i.css("height"),10);a=Math.max(10,a+e),r-=e;var n=e<0;if(n){if(this.unpairedPanelHidden)return!1;if(a<=10)return this.hideUnpaired(),!1}else this.unpairedPanelHidden&&(t.show(),this.unpairedPanelHidden=!1);if(n)this.pairedPanelHidden&&(i.show(),this.pairedPanelHidden=!1);else{if(this.pairedPanelHidden)return!1;if(r<=15)return this.hidePaired(),!1}return t.css({height:a+"px",flex:"0 0 auto"}),!0},selectPair:function(e){e.stopPropagation(),$(e.currentTarget).toggleClass("selected")},clearSelectedPaired:function(e){this.$(".paired-columns .dataset.selected").removeClass("selected")},_clickPairName:function(e){e.stopPropagation();var t=$(e.currentTarget),i=t.parent().parent().index(".dataset.paired"),a=this.paired[i],r=prompt("Enter a new name for the pair:",a.name);r&&(a.name=r,a.customizedName=!0,t.text(a.name))},_clickUnpair:function(e){var t=Math.floor($(e.currentTarget).index(".unpair-btn"));this._unpair(this.paired[t])},_dragoverPairedColumns:function(e){e.preventDefault();var t=this.$(".paired-columns .column-datasets");this._checkForAutoscroll(t,e.originalEvent.clientY);var i=this._getNearestPairedDatasetLi(e.originalEvent.clientY);$(".element-drop-placeholder").remove();var a=$('<div class="element-drop-placeholder"></div>');i.length?i.before(a):t.append(a)},_checkForAutoscroll:function(e,t){var i=e.offset(),a=e.scrollTop(),r=t-i.top,n=i.top+e.outerHeight()-t;r>=0&&r<this.autoscrollDist?e.scrollTop(a-2):n>=0&&n<this.autoscrollDist&&e.scrollTop(a+2)},_getNearestPairedDatasetLi:function(e){for(var t=this.$(".paired-columns .column-datasets li").toArray(),i=0;i<t.length;i++){var a=$(t[i]),r=a.offset().top,n=Math.floor(a.outerHeight()/2)+4;if(r+n>e&&r-n<e)return a}return $()},_dropPairedColumns:function(e){e.preventDefault(),e.dataTransfer.dropEffect="move";var t=this._getNearestPairedDatasetLi(e.originalEvent.clientY);return t.length?this.$dragging.insertBefore(t):this.$dragging.insertAfter(this.$(".paired-columns .unpair-btn").last()),this._syncPairsToDom(),!1},_syncPairsToDom:function(){var e=[];this.$(".paired-columns .dataset.paired").each(function(){e.push($(this).data("pair"))}),this.paired=e,this._renderPaired()},_pairDragstart:function(e,t){t.$el.addClass("selected");var i=this.$(".paired-columns .dataset.selected");this.$dragging=i},_pairDragend:function(e,t){$(".element-drop-placeholder").remove(),this.$dragging=null},toggleExtensions:function(e){var t=this;t.removeExtensions=void 0!==e?e:!t.removeExtensions,_.each(t.paired,function(e){e.customizedName||(e.name=t._guessNameForPair(e.forward,e.reverse))}),t._renderPaired(),t._renderFooter()},_printList:function(e){var t=this;_.each(e,function(i){e===t.paired?t._printPair(i):t.debug(i)})},_printPair:function(e){this.debug(e.forward.name,e.reverse.name,": ->",e.name)},toString:function(){return"PairedCollectionCreator"},templates:_.extend({},c.default.CollectionCreatorMixin._creatorTemplates,{header:_.template(['<div class="main-help well clear">','<a class="more-help" href="javascript:void(0);">',(0,h.default)("More help"),"</a>",'<div class="help-content">','<a class="less-help" href="javascript:void(0);">',(0,h.default)("Less"),"</a>","</div>","</div>",'<div class="alert alert-dismissable">','<button type="button" class="close" data-dismiss="alert" aria-hidden="true">&times;</button>','<span class="alert-message"></span>',"</div>",'<div class="column-headers vertically-spaced flex-column-container">','<div class="forward-column flex-column column">','<div class="column-header">','<div class="column-title">','<span class="title">',(0,h.default)("Unpaired forward"),"</span>",'<span class="title-info unpaired-info"></span>',"</div>",'<div class="unpaired-filter forward-unpaired-filter pull-left">','<input class="search-query" placeholder="',(0,h.default)("Filter this list"),'" />',"</div>","</div>","</div>",'<div class="paired-column flex-column no-flex column">','<div class="column-header">','<a class="choose-filters-link" href="javascript:void(0)">',(0,h.default)("Choose filters"),"</a>",'<a class="clear-filters-link" href="javascript:void(0);">',(0,h.default)("Clear filters"),"</a><br />",'<a class="autopair-link" href="javascript:void(0);">',(0,h.default)("Auto-pair"),"</a>","</div>","</div>",'<div class="reverse-column flex-column column">','<div class="column-header">','<div class="column-title">','<span class="title">',(0,h.default)("Unpaired reverse"),"</span>",'<span class="title-info unpaired-info"></span>',"</div>",'<div class="unpaired-filter reverse-unpaired-filter pull-left">','<input class="search-query" placeholder="',(0,h.default)("Filter this list"),'" />',"</div>","</div>","</div>","</div>"].join("")),middle:_.template(['<div class="unpaired-columns flex-column-container scroll-container flex-row">','<div class="forward-column flex-column column">','<ol class="column-datasets"></ol>',"</div>",'<div class="paired-column flex-column no-flex column">','<ol class="column-datasets"></ol>',"</div>",'<div class="reverse-column flex-column column">','<ol class="column-datasets"></ol>',"</div>","</div>",'<div class="flexible-partition">','<div class="flexible-partition-drag" title="',(0,h.default)("Drag to change"),'"></div>','<div class="column-header">','<div class="column-title paired-column-title">','<span class="title"></span>',"</div>",'<a class="unpair-all-link" href="javascript:void(0);">',(0,h.default)("Unpair all"),"</a>","</div>","</div>",'<div class="paired-columns flex-column-container scroll-container flex-row">','<ol class="column-datasets"></ol>',"</div>"].join("")),footer:_.template(['<div class="attributes clear">','<div class="clear">','<label class="setting-prompt pull-right">',(0,h.default)("Hide original elements"),"?",'<input class="hide-originals pull-right" type="checkbox" />',"</label>",'<label class="setting-prompt pull-right">',(0,h.default)("Remove file extensions from pair names"),"?",'<input class="remove-extensions pull-right" type="checkbox" />',"</label>","</div>",'<div class="clear">','<input class="collection-name form-control pull-right" ','placeholder="',(0,h.default)("Enter a name for your new list"),'" />','<div class="collection-name-prompt pull-right">',(0,h.default)("Name"),":</div>","</div>","</div>",'<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,h.default)("Cancel"),"</button>",'<div class="create-other btn-group dropup">','<button class="btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,h.default)("Create a different kind of collection"),' <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#">',(0,h.default)("Create a <i>single</i> pair"),"</a></li>",'<li><a href="#">',(0,h.default)("Create a list of <i>unpaired</i> datasets"),"</a></li>","</ul>","</div>","</div>",'<div class="main-options pull-right">','<button class="create-collection btn btn-primary">',(0,h.default)("Create list"),"</button>","</div>","</div>"].join("")),helpContent:_.template(["<p>",(0,h.default)(["Collections of paired datasets are ordered lists of dataset pairs (often forward and reverse reads). ","These collections can be passed to tools and workflows in order to have analyses done on each member of ","the entire group. This interface allows you to create a collection, choose which datasets are paired, ","and re-order the final collection."].join("")),"</p>","<p>",(0,h.default)(['Unpaired datasets are shown in the <i data-target=".unpaired-columns">unpaired section</i> ',"(hover over the underlined words to highlight below). ",'Paired datasets are shown in the <i data-target=".paired-columns">paired section</i>.',"<ul>To pair datasets, you can:","<li>Click a dataset in the ",'<i data-target=".unpaired-columns .forward-column .column-datasets,','.unpaired-columns .forward-column">forward column</i> ',"to select it then click a dataset in the ",'<i data-target=".unpaired-columns .reverse-column .column-datasets,','.unpaired-columns .reverse-column">reverse column</i>.',"</li>",'<li>Click one of the "Pair these datasets" buttons in the ','<i data-target=".unpaired-columns .paired-column .column-datasets,','.unpaired-columns .paired-column">middle column</i> ',"to pair the datasets in a particular row.","</li>",'<li>Click <i data-target=".autopair-link">"Auto-pair"</i> ',"to have your datasets automatically paired based on name.","</li>","</ul>"].join("")),"</p>","<p>",(0,h.default)(["<ul>You can filter what is shown in the unpaired sections by:","<li>Entering partial dataset names in either the ",'<i data-target=".forward-unpaired-filter input">forward filter</i> or ','<i data-target=".reverse-unpaired-filter input">reverse filter</i>.',"</li>","<li>Choosing from a list of preset filters by clicking the ",'<i data-target=".choose-filters-link">"Choose filters" link</i>.',"</li>","<li>Entering regular expressions to match dataset names. See: ",'<a href="https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions"',' target="_blank">MDN\'s JavaScript Regular Expression Tutorial</a>. ',"Note: forward slashes (\\) are not needed.","</li>","<li>Clearing the filters by clicking the ",'<i data-target=".clear-filters-link">"Clear filters" link</i>.',"</li>","</ul>"].join("")),"</p>","<p>",(0,h.default)(["To unpair individual dataset pairs, click the ",'<i data-target=".unpair-btn">unpair buttons ( <span class="fa fa-unlink"></span> )</i>. ','Click the <i data-target=".unpair-all-link">"Unpair all" link</i> to unpair all pairs.'].join("")),"</p>","<p>",(0,h.default)(['You can include or remove the file extensions (e.g. ".fastq") from your pair names by toggling the ','<i data-target=".remove-extensions-prompt">"Remove file extensions from pair names?"</i> control.'].join("")),"</p>","<p>",(0,h.default)(['Once your collection is complete, enter a <i data-target=".collection-name">name</i> and ','click <i data-target=".create-collection">"Create list"</i>. ',"(Note: you do not have to pair all unpaired datasets to finish.)"].join("")),"</p>"].join(""))})}),m=function(e,t){var i,a=jQuery.Deferred();if(t=_.defaults(t||{},{datasets:e,oncancel:function(){Galaxy.modal.hide(),a.reject("cancelled")},oncreate:function(e,t){Galaxy.modal.hide(),a.resolve(t)}}),!window.Galaxy||!Galaxy.modal)throw new Error("Galaxy or Galaxy.modal not found");return i=new f(t),Galaxy.modal.show({title:(0,h.default)("Create a collection of paired datasets"),body:i.$el,width:"80%",height:"800px",closing_events:!0}),i.render(),window.creator=i,a};e.default={PairedCollectionCreator:f,pairedCollectionCreatorModal:m,createListOfPairsCollection:function(e,t){var i=e.toJSON();return m(i,{historyId:e.historyId,defaultHideSourceItems:t})}}});
\ No newline at end of file
diff --git a/static/scripts/mvc/dataset/data.js b/static/scripts/mvc/dataset/data.js
index 507c7f064bb..17e1b26b180 100644
--- a/static/scripts/mvc/dataset/data.js
+++ b/static/scripts/mvc/dataset/data.js
@@ -1 +1 @@
-define("mvc/dataset/data",["exports","mvc/ui/ui-modal","mvc/ui/ui-frames","mvc/ui/icon-button"],function(t,e,i,n){"use strict";function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});a(e),a(i);var l=a(n),o=Backbone.Model.extend({}),s=Backbone.Model.extend({defaults:{id:"",type:"",name:"",hda_ldda:"hda",metadata:null},initialize:function(){this.get("metadata")||this._set_metadata(),this.on("change",this._set_metadata,this)},_set_metadata:function(){var t=new o;_.each(_.keys(this.attributes),function(e){if(0===e.indexOf("metadata_")){var i=e.split("metadata_")[1];t.set(i,this.attributes[e]),delete this.attributes[e]}},this),this.set("metadata",t,{silent:!0})},get_metadata:function(t){return this.attributes.metadata.get(t)},urlRoot:Galaxy.root+"api/datasets"}),r=s.extend({defaults:_.extend({},s.prototype.defaults,{chunk_url:null,first_data_chunk:null,offset:0,at_eof:!1}),initialize:function(t){s.prototype.initialize.call(this),this.attributes.first_data_chunk&&(this.attributes.offset=this.attributes.first_data_chunk.offset),this.attributes.chunk_url=Galaxy.root+"dataset/display?dataset_id="+this.id,this.attributes.url_viz=Galaxy.root+"visualization"},get_next_chunk:function(){if(this.attributes.at_eof)return null;var t=this,e=$.Deferred();return $.getJSON(this.attributes.chunk_url,{offset:t.attributes.offset}).success(function(i){var n;""!==i.ck_data?(n=i,t.attributes.offset=i.offset):(t.attributes.at_eof=!0,n=null),e.resolve(n)}),e}}),d=Backbone.Collection.extend({model:s}),h=Backbone.View.extend({initialize:function(t){this.row_count=0,this.loading_chunk=!1,new f({model:t.model,$el:this.$el})},expand_to_container:function(){this.$el.height()<this.scroll_elt.height()&&this.attempt_to_fetch()},attempt_to_fetch:function(t){var e=this;!this.loading_chunk&&this.scrolled_to_bottom()&&(this.loading_chunk=!0,this.loading_indicator.show(),$.when(e.model.get_next_chunk()).then(function(t){t&&(e._renderChunk(t),e.loading_chunk=!1),e.loading_indicator.hide(),e.expand_to_container()}))},render:function(){this.loading_indicator=$("<div/>").attr("id","loading_indicator"),this.$el.append(this.loading_indicator);var t=$("<table/>").attr({id:"content_table",cellpadding:0});this.$el.append(t);var e=this.model.get_metadata("column_names"),i=$("<thead/>").appendTo(t),n=$("<tr/>").appendTo(i);if(e)n.append("<th>"+e.join("</th><th>")+"</th>");else for(var a=1;a<=this.model.get_metadata("columns");a++)n.append("<th>"+a+"</th>");var l=this,o=this.model.get("first_data_chunk");o?this._renderChunk(o):$.when(l.model.get_next_chunk()).then(function(t){l._renderChunk(t)}),this.scroll_elt.scroll(function(){l.attempt_to_fetch()})},scrolled_to_bottom:function(){return!1},_renderCell:function(t,e,i){var n=$("<td>").text(t),a=this.model.get_metadata("column_types");return void 0!==i?n.attr("colspan",i).addClass("stringalign"):a&&e<a.length&&("str"!==a[e]&&"list"!==a[e]||n.addClass("stringalign")),n},_renderRow:function(t){var e=t.split("\t"),i=$("<tr>"),n=this.model.get_metadata("columns");return this.row_count%2!=0&&i.addClass("dark_row"),e.length===n?_.each(e,function(t,e){i.append(this._renderCell(t,e))},this):e.length>n?(_.each(e.slice(0,n-1),function(t,e){i.append(this._renderCell(t,e))},this),i.append(this._renderCell(e.slice(n-1).join("\t"),n-1))):1===e.length?i.append(this._renderCell(t,0,n)):(_.each(e,function(t,e){i.append(this._renderCell(t,e))},this),_.each(_.range(n-e.length),function(){i.append($("<td>"))})),this.row_count++,i},_renderChunk:function(t){var e=this.$el.find("table");_.each(t.ck_data.split("\n"),function(t,i){""!==t&&e.append(this._renderRow(t))},this)}}),c=h.extend({initialize:function(t){h.prototype.initialize.call(this,t);var e=_.find(this.$el.parents(),function(t){return"auto"===$(t).css("overflow")});e||(e=window),this.scroll_elt=$(e)},scrolled_to_bottom:function(){return this.$el.height()-this.scroll_elt.scrollTop()-this.scroll_elt.height()<=0}}),u=h.extend({initialize:function(t){h.prototype.initialize.call(this,t),this.scroll_elt=this.$el.css({position:"relative",overflow:"scroll",height:t.height||"500px"})},scrolled_to_bottom:function(){return this.$el.scrollTop()+this.$el.innerHeight()>=this.el.scrollHeight}}),f=Backbone.View.extend({col:{chrom:null,start:null,end:null},url_viz:null,dataset_id:null,genome_build:null,file_ext:null,initialize:function(t){var e=parent.Galaxy;if(e&&e.modal&&(this.modal=e.modal),e&&e.frame&&(this.frame=e.frame),this.modal&&this.frame){var i=t.model,n=i.get("metadata");if(i.get("file_ext")){if(this.file_ext=i.get("file_ext"),"bed"==this.file_ext){if(!(n.get("chromCol")&&n.get("startCol")&&n.get("endCol")))return void console.log("TabularButtonTrackster : Bed-file metadata incomplete.");this.col.chrom=n.get("chromCol")-1,this.col.start=n.get("startCol")-1,this.col.end=n.get("endCol")-1}if("vcf"==this.file_ext){var a=function(t,e){for(var i=0;i<e.length;i++)if(e[i].match(t))return i;return-1};if(this.col.chrom=a("Chrom",n.get("column_names")),this.col.start=a("Pos",n.get("column_names")),this.col.end=null,-1==this.col.chrom||-1==this.col.start)return void console.log("TabularButtonTrackster : VCF-file metadata incomplete.")}if(void 0!==this.col.chrom)if(i.id)if(this.dataset_id=i.id,i.get("url_viz")){this.url_viz=i.get("url_viz"),i.get("genome_build")&&(this.genome_build=i.get("genome_build"));var o=new l.default.IconButtonView({model:new l.default.IconButton({title:"Visualize",icon_class:"chart_curve",id:"btn_viz"})});this.setElement(t.$el),this.$el.append(o.render().$el),this.hide()}else console.log("TabularButtonTrackster : Url for visualization controller is missing.");else console.log("TabularButtonTrackster : Dataset identification is missing.")}}},events:{"mouseover tr":"show",mouseleave:"hide"},show:function(t){var e=this;if(null!==this.col.chrom){var i=$(t.target).parent(),n=i.children().eq(this.col.chrom).html(),a=i.children().eq(this.col.start).html(),l=this.col.end?i.children().eq(this.col.end).html():a;if(!n.match("^#")&&""!==n&&function(t){return!isNaN(parseFloat(t))&&isFinite(t)}(a)){var o={dataset_id:this.dataset_id,gene_region:n+":"+a+"-"+l},s=i.offset(),r=s.left-10,d=s.top-$(window).scrollTop()+3;$("#btn_viz").css({position:"fixed",top:d+"px",left:r+"px"}),$("#btn_viz").off("click"),$("#btn_viz").click(function(){e.frame.add({title:"Trackster",url:e.url_viz+"/trackster?"+$.param(o)})}),$("#btn_viz").show()}else $("#btn_viz").hide()}},hide:function(){this.$("#btn_viz").hide()}});t.default={Dataset:s,TabularDataset:r,DatasetCollection:d,TabularDatasetChunkedView:h,createTabularDatasetChunkedView:function(t){t.model||(t.model=new r(t.dataset_config));var e=t.parent_elt,i=t.embedded;delete t.embedded,delete t.parent_elt,delete t.dataset_config;var n=i?new u(t):new c(t);return n.render(),e&&(e.append(n.$el),n.expand_to_container()),n}}});
\ No newline at end of file
+define("mvc/dataset/data",["exports","utils/localization","mvc/ui/ui-modal","mvc/ui/ui-frames","mvc/ui/icon-button"],function(t,e,i,n,a){"use strict";function l(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var o=l(e),s=(l(i),l(n),l(a)),r=Backbone.Model.extend({}),d=Backbone.Model.extend({defaults:{id:"",type:"",name:"",hda_ldda:"hda",metadata:null},initialize:function(){this.get("metadata")||this._set_metadata(),this.on("change",this._set_metadata,this)},_set_metadata:function(){var t=new r;_.each(_.keys(this.attributes),function(e){if(0===e.indexOf("metadata_")){var i=e.split("metadata_")[1];t.set(i,this.attributes[e]),delete this.attributes[e]}},this),this.set("metadata",t,{silent:!0})},get_metadata:function(t){return this.attributes.metadata.get(t)},urlRoot:Galaxy.root+"api/datasets"}),h=d.extend({defaults:_.extend({},d.prototype.defaults,{chunk_url:null,first_data_chunk:null,offset:0,at_eof:!1}),initialize:function(t){d.prototype.initialize.call(this),this.attributes.first_data_chunk&&(this.attributes.offset=this.attributes.first_data_chunk.offset),this.attributes.chunk_url=Galaxy.root+"dataset/display?dataset_id="+this.id,this.attributes.url_viz=Galaxy.root+"visualization"},get_next_chunk:function(){if(this.attributes.at_eof)return null;var t=this,e=$.Deferred();return $.getJSON(this.attributes.chunk_url,{offset:t.attributes.offset}).success(function(i){var n;""!==i.ck_data?(n=i,t.attributes.offset=i.offset):(t.attributes.at_eof=!0,n=null),e.resolve(n)}),e}}),c=Backbone.Collection.extend({model:d}),u=Backbone.View.extend({initialize:function(t){this.row_count=0,this.loading_chunk=!1,new p({model:t.model,$el:this.$el})},expand_to_container:function(){this.$el.height()<this.scroll_elt.height()&&this.attempt_to_fetch()},attempt_to_fetch:function(t){var e=this;!this.loading_chunk&&this.scrolled_to_bottom()&&(this.loading_chunk=!0,this.loading_indicator.show(),$.when(e.model.get_next_chunk()).then(function(t){t&&(e._renderChunk(t),e.loading_chunk=!1),e.loading_indicator.hide(),e.expand_to_container()}))},render:function(){this.loading_indicator=$("<div/>").attr("id","loading_indicator"),this.$el.append(this.loading_indicator);var t=$("<table/>").attr({id:"content_table",cellpadding:0});this.$el.append(t);var e=this.model.get_metadata("column_names"),i=$("<thead/>").appendTo(t),n=$("<tr/>").appendTo(i);if(e)n.append("<th>"+e.join("</th><th>")+"</th>");else for(var a=1;a<=this.model.get_metadata("columns");a++)n.append("<th>"+a+"</th>");var l=this,o=this.model.get("first_data_chunk");o?this._renderChunk(o):$.when(l.model.get_next_chunk()).then(function(t){l._renderChunk(t)}),this.scroll_elt.scroll(function(){l.attempt_to_fetch()})},scrolled_to_bottom:function(){return!1},_renderCell:function(t,e,i){var n=$("<td>").text(t),a=this.model.get_metadata("column_types");return void 0!==i?n.attr("colspan",i).addClass("stringalign"):a&&e<a.length&&("str"!==a[e]&&"list"!==a[e]||n.addClass("stringalign")),n},_renderRow:function(t){var e=t.split("\t"),i=$("<tr>"),n=this.model.get_metadata("columns");return this.row_count%2!=0&&i.addClass("dark_row"),e.length===n?_.each(e,function(t,e){i.append(this._renderCell(t,e))},this):e.length>n?(_.each(e.slice(0,n-1),function(t,e){i.append(this._renderCell(t,e))},this),i.append(this._renderCell(e.slice(n-1).join("\t"),n-1))):1===e.length?i.append(this._renderCell(t,0,n)):(_.each(e,function(t,e){i.append(this._renderCell(t,e))},this),_.each(_.range(n-e.length),function(){i.append($("<td>"))})),this.row_count++,i},_renderChunk:function(t){var e=this.$el.find("table");_.each(t.ck_data.split("\n"),function(t,i){""!==t&&e.append(this._renderRow(t))},this)}}),f=u.extend({initialize:function(t){u.prototype.initialize.call(this,t);var e=_.find(this.$el.parents(),function(t){return"auto"===$(t).css("overflow")});e||(e=window),this.scroll_elt=$(e)},scrolled_to_bottom:function(){return this.$el.height()-this.scroll_elt.scrollTop()-this.scroll_elt.height()<=0}}),m=u.extend({initialize:function(t){u.prototype.initialize.call(this,t),this.scroll_elt=this.$el.css({position:"relative",overflow:"scroll",height:t.height||"500px"})},scrolled_to_bottom:function(){return this.$el.scrollTop()+this.$el.innerHeight()>=this.el.scrollHeight}}),p=Backbone.View.extend({col:{chrom:null,start:null,end:null},url_viz:null,dataset_id:null,genome_build:null,file_ext:null,initialize:function(t){var e=parent.Galaxy;if(e&&e.modal&&(this.modal=e.modal),e&&e.frame&&(this.frame=e.frame),this.modal&&this.frame){var i=t.model,n=i.get("metadata");if(i.get("file_ext")){if(this.file_ext=i.get("file_ext"),"bed"==this.file_ext){if(!(n.get("chromCol")&&n.get("startCol")&&n.get("endCol")))return void console.log("TabularButtonTrackster : Bed-file metadata incomplete.");this.col.chrom=n.get("chromCol")-1,this.col.start=n.get("startCol")-1,this.col.end=n.get("endCol")-1}if("vcf"==this.file_ext){var a=function(t,e){for(var i=0;i<e.length;i++)if(e[i].match(t))return i;return-1};if(this.col.chrom=a("Chrom",n.get("column_names")),this.col.start=a("Pos",n.get("column_names")),this.col.end=null,-1==this.col.chrom||-1==this.col.start)return void console.log("TabularButtonTrackster : VCF-file metadata incomplete.")}if(void 0!==this.col.chrom)if(i.id)if(this.dataset_id=i.id,i.get("url_viz")){this.url_viz=i.get("url_viz"),i.get("genome_build")&&(this.genome_build=i.get("genome_build"));var l=new s.default.IconButtonView({model:new s.default.IconButton({title:(0,o.default)("Visualize"),icon_class:"chart_curve",id:"btn_viz"})});this.setElement(t.$el),this.$el.append(l.render().$el),this.hide()}else console.log("TabularButtonTrackster : Url for visualization controller is missing.");else console.log("TabularButtonTrackster : Dataset identification is missing.")}}},events:{"mouseover tr":"show",mouseleave:"hide"},show:function(t){var e=this;if(null!==this.col.chrom){var i=$(t.target).parent(),n=i.children().eq(this.col.chrom).html(),a=i.children().eq(this.col.start).html(),l=this.col.end?i.children().eq(this.col.end).html():a;if(!n.match("^#")&&""!==n&&function(t){return!isNaN(parseFloat(t))&&isFinite(t)}(a)){var s={dataset_id:this.dataset_id,gene_region:n+":"+a+"-"+l},r=i.offset(),d=r.left-10,h=r.top-$(window).scrollTop()+3;$("#btn_viz").css({position:"fixed",top:h+"px",left:d+"px"}),$("#btn_viz").off("click"),$("#btn_viz").click(function(){e.frame.add({title:(0,o.default)("Trackster"),url:e.url_viz+"/trackster?"+$.param(s)})}),$("#btn_viz").show()}else $("#btn_viz").hide()}},hide:function(){this.$("#btn_viz").hide()}});t.default={Dataset:d,TabularDataset:h,DatasetCollection:c,TabularDatasetChunkedView:u,createTabularDatasetChunkedView:function(t){t.model||(t.model=new h(t.dataset_config));var e=t.parent_elt,i=t.embedded;delete t.embedded,delete t.parent_elt,delete t.dataset_config;var n=i?new m(t):new f(t);return n.render(),e&&(e.append(n.$el),n.expand_to_container()),n}}});
\ No newline at end of file
diff --git a/static/scripts/mvc/dataset/dataset-edit-attributes.js b/static/scripts/mvc/dataset/dataset-edit-attributes.js
index fc962256fdd..44afec5961f 100644
--- a/static/scripts/mvc/dataset/dataset-edit-attributes.js
+++ b/static/scripts/mvc/dataset/dataset-edit-attributes.js
@@ -1 +1 @@
-define("mvc/dataset/dataset-edit-attributes",["exports","utils/utils","mvc/ui/ui-tabs","mvc/ui/ui-misc","mvc/form/form-view"],function(t,e,a,i,s){"use strict";function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});o(e);var n=o(a),r=o(i),d=o(s),u=Backbone.View.extend({initialize:function(){this.setElement("<div/>"),this.model=new Backbone.Model({dataset_id:Galaxy.params.dataset_id}),this.message=new r.default.Message({persistent:!0}),this.tabs=this._createTabs(),this.$el.append($("<h4/>").append("Edit dataset attributes")).append(this.message.$el).append("<p/>").append(this.tabs.$el).hide(),this.render()},render:function(){var t=this;$.ajax({url:Galaxy.root+"dataset/get_edit?dataset_id="+t.model.get("dataset_id"),success:function(e){!t.initial_message&&t.message.update(e),t.initial_message=!0,_.each(t.forms,function(t,a){t.model.set("inputs",e[a+"_inputs"]),t.model.set("hide_operations",e[a+"_disable"]),t.render()}),t.$el.show()},error:function(e){var a=e.responseJSON&&e.responseJSON.err_msg;t.message.update({status:"danger",message:a||"Error occured while loading the dataset."})}})},_submit:function(t,e){var a=this,i=e.data.create();i.dataset_id=this.model.get("dataset_id"),i.operation=t,$.ajax({type:"PUT",url:Galaxy.root+"dataset/set_edit",data:i,success:function(t){a.message.update(t),a.render(),a._reloadHistory()},error:function(t){var e=t.responseJSON&&t.responseJSON.err_msg;a.message.update({status:"danger",message:e||"Error occured while editing the dataset attributes."})}})},_createTabs:function(){this.forms={attribute:this._getAttribute(),conversion:this._getConversion(),datatype:this._getDatatype(),permission:this._getPermission()};var t=new n.default.View;return t.add({id:"attribute",title:"Attributes",icon:"fa fa-bars",tooltip:"Edit dataset attributes",$el:this.forms.attribute.$el}),t.add({id:"convert",title:"Convert",icon:"fa-gear",tooltip:"Convert to new format",$el:this.forms.conversion.$el}),t.add({id:"datatype",title:"Datatypes",icon:"fa-database",tooltip:"Change data type",$el:this.forms.datatype.$el}),t.add({id:"permissions",title:"Permissions",icon:"fa-user",tooltip:"Permissions",$el:this.forms.permission.$el}),t},_getAttribute:function(){var t=this,e=new d.default({title:"Edit attributes",operations:{submit_attributes:new r.default.ButtonIcon({tooltip:"Save attributes of the dataset.",icon:"fa-floppy-o",title:"Save",onclick:function(){t._submit("attributes",e)}}),submit_autodetect:new r.default.ButtonIcon({tooltip:"This will inspect the dataset and attempt to correct the values of fields if they are not accurate.",icon:"fa-undo",title:"Auto-detect",onclick:function(){t._submit("autodetect",e)}})}});return e},_getConversion:function(){var t=this,e=new d.default({title:"Convert to new format",operations:{submit_conversion:new r.default.ButtonIcon({tooltip:"Convert the datatype to a new format.",title:"Convert datatype",icon:"fa-exchange",onclick:function(){t._submit("conversion",e)}})}});return e},_getDatatype:function(){var t=this,e=new d.default({title:"Change datatype",operations:{submit_datatype:new r.default.ButtonIcon({tooltip:"Change the datatype to a new type.",title:"Change datatype",icon:"fa-exchange",onclick:function(){t._submit("datatype",e)}})}});return e},_getPermission:function(){var t=this,e=new d.default({title:"Manage dataset permissions",operations:{submit_permission:new r.default.ButtonIcon({tooltip:"Save permissions.",title:"Save permissions",icon:"fa-floppy-o ",onclick:function(){t._submit("permission",e)}})}});return e},_reloadHistory:function(){window.Galaxy&&window.Galaxy.currHistoryPanel.loadCurrentHistory()}});t.default={View:u}});
\ No newline at end of file
+define("mvc/dataset/dataset-edit-attributes",["exports","utils/localization","utils/utils","mvc/ui/ui-tabs","mvc/ui/ui-misc","mvc/form/form-view"],function(t,e,a,i,s,o){"use strict";function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var r=n(e),d=(n(a),n(i)),u=n(s),l=n(o),c=Backbone.View.extend({initialize:function(){this.setElement("<div/>"),this.model=new Backbone.Model({dataset_id:Galaxy.params.dataset_id}),this.message=new u.default.Message({persistent:!0}),this.tabs=this._createTabs(),this.$el.append($("<h4/>").append("Edit dataset attributes")).append(this.message.$el).append("<p/>").append(this.tabs.$el).hide(),this.render()},render:function(){var t=this;$.ajax({url:Galaxy.root+"dataset/get_edit?dataset_id="+t.model.get("dataset_id"),success:function(e){!t.initial_message&&t.message.update(e),t.initial_message=!0,_.each(t.forms,function(t,a){t.model.set("inputs",e[a+"_inputs"]),t.model.set("hide_operations",e[a+"_disable"]),t.render()}),t.$el.show()},error:function(e){var a=e.responseJSON&&e.responseJSON.err_msg;t.message.update({status:"danger",message:a||"Error occured while loading the dataset."})}})},_submit:function(t,e){var a=this,i=e.data.create();i.dataset_id=this.model.get("dataset_id"),i.operation=t,$.ajax({type:"PUT",url:Galaxy.root+"dataset/set_edit",data:i,success:function(t){a.message.update(t),a.render(),a._reloadHistory()},error:function(t){var e=t.responseJSON&&t.responseJSON.err_msg;a.message.update({status:"danger",message:e||"Error occured while editing the dataset attributes."})}})},_createTabs:function(){this.forms={attribute:this._getAttribute(),conversion:this._getConversion(),datatype:this._getDatatype(),permission:this._getPermission()};var t=new d.default.View;return t.add({id:"attribute",title:(0,r.default)("Attributes"),icon:"fa fa-bars",tooltip:(0,r.default)("Edit dataset attributes"),$el:this.forms.attribute.$el}),t.add({id:"convert",title:(0,r.default)("Convert"),icon:"fa-gear",tooltip:(0,r.default)("Convert to new format"),$el:this.forms.conversion.$el}),t.add({id:"datatype",title:(0,r.default)("Datatypes"),icon:"fa-database",tooltip:(0,r.default)("Change data type"),$el:this.forms.datatype.$el}),t.add({id:"permissions",title:(0,r.default)("Permissions"),icon:"fa-user",tooltip:(0,r.default)("Permissions"),$el:this.forms.permission.$el}),t},_getAttribute:function(){var t=this,e=new l.default({title:(0,r.default)("Edit attributes"),operations:{submit_attributes:new u.default.ButtonIcon({tooltip:(0,r.default)("Save attributes of the dataset."),icon:"fa-floppy-o",title:(0,r.default)("Save"),onclick:function(){t._submit("attributes",e)}}),submit_autodetect:new u.default.ButtonIcon({tooltip:"This will inspect the dataset and attempt to correct the values of fields if they are not accurate.",icon:"fa-undo",title:"Auto-detect",onclick:function(){t._submit("autodetect",e)}})}});return e},_getConversion:function(){var t=this,e=new l.default({title:(0,r.default)("Convert to new format"),operations:{submit_conversion:new u.default.ButtonIcon({tooltip:(0,r.default)("Convert the datatype to a new format."),title:(0,r.default)("Convert datatype"),icon:"fa-exchange",onclick:function(){t._submit("conversion",e)}})}});return e},_getDatatype:function(){var t=this,e=new l.default({title:(0,r.default)("Change datatype"),operations:{submit_datatype:new u.default.ButtonIcon({tooltip:(0,r.default)("Change the datatype to a new type."),title:(0,r.default)("Change datatype"),icon:"fa-exchange",onclick:function(){t._submit("datatype",e)}})}});return e},_getPermission:function(){var t=this,e=new l.default({title:(0,r.default)("Manage dataset permissions"),operations:{submit_permission:new u.default.ButtonIcon({tooltip:(0,r.default)("Save permissions."),title:(0,r.default)("Save permissions"),icon:"fa-floppy-o ",onclick:function(){t._submit("permission",e)}})}});return e},_reloadHistory:function(){window.Galaxy&&window.Galaxy.currHistoryPanel.loadCurrentHistory()}});t.default={View:c}});
\ No newline at end of file
diff --git a/static/scripts/mvc/dataset/dataset-error.js b/static/scripts/mvc/dataset/dataset-error.js
index 53000ba7c81..302f666b450 100644
--- a/static/scripts/mvc/dataset/dataset-error.js
+++ b/static/scripts/mvc/dataset/dataset-error.js
@@ -1 +1 @@
-define("mvc/dataset/dataset-error",["exports","utils/utils","mvc/ui/ui-misc","mvc/form/form-view"],function(e,a,t,r){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var o=s(a),n=s(t),i=s(r),l=Backbone.View.extend({initialize:function(){this.setElement("<div/>"),this.model=new Backbone.Model({dataset_id:Galaxy.params.dataset_id}),this.render()},render:function(){var e=Galaxy.root+"api/datasets/"+this.model.get("dataset_id"),a=this;o.default.get({url:e,success:function(e){var t=Galaxy.root+"api/jobs/"+e.creating_job+"?full=True";o.default.get({url:t,success:function(t){Galaxy.root,e.creating_job;a.render_error_page(a,e,t)},error:function(e){var t={status:"error",message:"Error occured while loading the job.",persistent:!0,cls:"errormessage"};a.display_message(t,a.$(".response-message"))}})},error:function(e){var t={status:"error",message:"Error occured while loading the dataset.",persistent:!0,cls:"errormessage"};a.display_message(t,a.$(".response-message"))}})},render_error_page:function(e,a,t){e.$el.empty().append(e._templateHeader()),e.$el.append("<h2>Dataset Error</h2>"),e.$el.append("<p>An error occured while running the tool <b>"+t.tool_id+"</b>.</p>"),e.$el.append("<p>Tool execution generated the following messages:</p>"),e.$el.append('<pre class="code">'+t.stderr+"</pre>"),e.$el.append("<h2>Report This Error</pre>"),e.$el.append("<p>Usually the local Galaxy administrators regularly review errors that occur on the server. However, if you would like to provide additional information (such as what you were trying to do when the error occurred) and a contact e-mail address, we will be better able to investigate your problem and get back to you.</p>"),e.$el.append(e._getBugFormTemplate(a,t))},display_message:function(e,a,t,r){r?t?a.append(new n.default.UnescapedMessage(e).$el):a.empty().html(new n.default.UnescapedMessage(e).$el):t?a.append(new n.default.Message(e).$el):a.empty().html(new n.default.Message(e).$el)},_templateHeader:function(){return'<div class="page-container edit-attr"><div class="response-message"></div></div>'},_getBugFormTemplate:function(e,a){var t=this,r=[{help:"Your email address",options:[],type:"text",name:"email",label:"Your email",value:Galaxy.user.get("email")},{help:"Any additional comments you can provide regarding what you were doing at the time of the bug.",options:[],type:"text",area:!0,name:"message",label:"Message"}],s=new i.default({title:"Error Report",inputs:r,buttons:{save:new n.default.Button({icon:"fa-bug",title:"Report",cls:"ui-button btn btn-primary",floating:"clear",onclick:function(){var r=s.data.create(),o=Galaxy.root+"api/jobs/"+a.id+"/error";r.dataset_id=e.id,t.submit(r,o)}})}});return s.$el},submit:function(e,a){var t=this;$.ajax({type:"POST",url:a,data:e,success:function(e){t.$el.empty().append(t._templateHeader()),e.messages.forEach(function(e){t.display_message({status:e[1],message:e[0],persistent:!0},t.$(".response-message"),!0,!0)})},error:function(e){var a={status:"error",message:"Error occured while saving. Please fill all the required fields and try again.",persistent:!0,cls:"errormessage"};t.display_message(a,t.$(".response-message"))}})}});e.default={View:l}});
\ No newline at end of file
+define("mvc/dataset/dataset-error",["exports","utils/localization","utils/utils","mvc/ui/ui-misc","mvc/form/form-view"],function(e,a,t,r,s){"use strict";function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var n=o(a),i=o(t),l=o(r),d=o(s),u=Backbone.View.extend({initialize:function(){this.setElement("<div/>"),this.model=new Backbone.Model({dataset_id:Galaxy.params.dataset_id}),this.render()},render:function(){var e=Galaxy.root+"api/datasets/"+this.model.get("dataset_id"),a=this;i.default.get({url:e,success:function(e){var t=Galaxy.root+"api/jobs/"+e.creating_job+"?full=True";i.default.get({url:t,success:function(t){Galaxy.root,e.creating_job;a.render_error_page(a,e,t)},error:function(e){var t={status:"error",message:"Error occured while loading the job.",persistent:!0,cls:"errormessage"};a.display_message(t,a.$(".response-message"))}})},error:function(e){var t={status:"error",message:"Error occured while loading the dataset.",persistent:!0,cls:"errormessage"};a.display_message(t,a.$(".response-message"))}})},render_error_page:function(e,a,t){e.$el.empty().append(e._templateHeader()),e.$el.append("<h2>Dataset Error</h2>"),e.$el.append("<p>An error occured while running the tool <b>"+t.tool_id+"</b>.</p>"),e.$el.append("<p>Tool execution generated the following messages:</p>"),e.$el.append('<pre class="code">'+t.stderr+"</pre>"),e.$el.append("<h2>Report This Error</pre>"),e.$el.append("<p>Usually the local Galaxy administrators regularly review errors that occur on the server. However, if you would like to provide additional information (such as what you were trying to do when the error occurred) and a contact e-mail address, we will be better able to investigate your problem and get back to you.</p>"),e.$el.append(e._getBugFormTemplate(a,t))},display_message:function(e,a,t,r){r?t?a.append(new l.default.UnescapedMessage(e).$el):a.empty().html(new l.default.UnescapedMessage(e).$el):t?a.append(new l.default.Message(e).$el):a.empty().html(new l.default.Message(e).$el)},_templateHeader:function(){return'<div class="page-container edit-attr"><div class="response-message"></div></div>'},_getBugFormTemplate:function(e,a){var t=this,r=[{help:(0,n.default)("Your email address"),options:[],type:"text",name:"email",label:"Your email",value:Galaxy.user.get("email")},{help:(0,n.default)("Any additional comments you can provide regarding what you were doing at the time of the bug."),options:[],type:"text",area:!0,name:"message",label:"Message"}],s=new d.default({title:(0,n.default)("Error Report"),inputs:r,buttons:{save:new l.default.Button({icon:"fa-bug",title:(0,n.default)("Report"),cls:"ui-button btn btn-primary",floating:"clear",onclick:function(){var r=s.data.create(),o=Galaxy.root+"api/jobs/"+a.id+"/error";r.dataset_id=e.id,t.submit(r,o)}})}});return s.$el},submit:function(e,a){var t=this;$.ajax({type:"POST",url:a,data:e,success:function(e){t.$el.empty().append(t._templateHeader()),e.messages.forEach(function(e){t.display_message({status:e[1],message:e[0],persistent:!0},t.$(".response-message"),!0,!0)})},error:function(e){var a={status:"error",message:"Error occured while saving. Please fill all the required fields and try again.",persistent:!0,cls:"errormessage"};t.display_message(a,t.$(".response-message"))}})}});e.default={View:u}});
\ No newline at end of file
diff --git a/static/scripts/mvc/dataset/dataset-li-edit.js b/static/scripts/mvc/dataset/dataset-li-edit.js
index 41db0cf9202..ffb9d4feeb4 100644
--- a/static/scripts/mvc/dataset/dataset-li-edit.js
+++ b/static/scripts/mvc/dataset/dataset-li-edit.js
@@ -1 +1 @@
-define("mvc/dataset/dataset-li-edit",["exports","mvc/dataset/states","mvc/dataset/dataset-li","mvc/tag","mvc/annotation","ui/fa-icon-button","mvc/base-mvc","utils/localization"],function(t,e,a,i,n,r,o,s){"use strict";function l(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var d=l(e),u=l(a),c=l(i),f=l(n),h=l(r),g=l(o),m=l(s),p=u.default.DatasetListItemView,v=p.extend({initialize:function(t){p.prototype.initialize.call(this,t),this.hasUser=t.hasUser,this.purgeAllowed=t.purgeAllowed||!1,this.tagsEditorShown=t.tagsEditorShown||!1,this.annotationEditorShown=t.annotationEditorShown||!1},_renderPrimaryActions:function(){var t=p.prototype._renderPrimaryActions.call(this);return this.model.get("state")===d.default.NOT_VIEWABLE?t:p.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){var t=this;if(this.model.get("state")===d.default.DISCARDED||!this.model.get("accessible"))return null;var e=this.model.get("purged"),a=this.model.get("deleted"),i={title:(0,m.default)("Edit attributes"),href:Galaxy.root+"datasets/edit?dataset_id="+this.model.attributes.id,faIcon:"fa-pencil",classes:"edit-btn",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/edit",{dataset_id:t.model.attributes.id}))}};return a||e?(i.disabled=!0,e?i.title=(0,m.default)("Cannot edit attributes of datasets removed from disk"):a&&(i.title=(0,m.default)("Undelete dataset to edit attributes"))):_.contains([d.default.UPLOAD,d.default.NEW],this.model.get("state"))&&(i.disabled=!0,i.title=(0,m.default)("This dataset is not yet editable")),(0,h.default)(i)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var t=this,e=this.model.isDeletedOrPurged();return(0,h.default)({title:e?(0,m.default)("Dataset is already deleted"):(0,m.default)("Delete"),disabled:e,faIcon:"fa-times",classes:"delete-btn",onclick:function(){t.$el.find(".icon-btn.delete-btn").trigger("mouseout"),t.model.delete()}})},_renderDetails:function(){var t=p.prototype._renderDetails.call(this),e=this.model.get("state");return!this.model.isDeletedOrPurged()&&_.contains([d.default.OK,d.default.FAILED_METADATA],e)&&(this._renderTags(t),this._renderAnnotation(t),this._makeDbkeyEditLink(t)),this._setUpBehaviors(t),t},_renderToolHelpButton:function(){var t=this.model.attributes.dataset_id,e=this.model.attributes.creating_job,a=this,i=function(e){var i='<div id="thdiv-'+t+'" class="toolhelp">';e.name&&e.help?(i+="<strong>Tool help for "+e.name+"</strong><hr/>",i+=e.help):i+="<strong>Tool help is unavailable for this dataset.</strong><hr/>",i+="</div>",a.$el.find(".details").append($.parseHTML(i))},n=function(t){$.ajax({url:Galaxy.root+"api/tools/"+t.tool_id+"/build"}).done(function(t){i(t)}).fail(function(){i({})})};return null===Galaxy.user.id?null:(0,h.default)({title:(0,m.default)("Tool Help"),classes:"icon-btn",href:"#",faIcon:"fa-question",onclick:function(){a.$el.find(".toolhelp").length>0?a.$el.find(".toolhelp").toggle():$.ajax({url:Galaxy.root+"api/jobs/"+e}).done(function(t){n(t)}).fail(function(){console.log('Failed at recovering job information from the  Galaxy API for job id "'+e+'".')})}})},_renderSecondaryActions:function(){var t=p.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case d.default.UPLOAD:case d.default.NOT_VIEWABLE:return t;case d.default.ERROR:return t.unshift(this._renderErrButton()),t.concat([this._renderRerunButton(),this._renderToolHelpButton()]);case d.default.OK:case d.default.FAILED_METADATA:return t.concat([this._renderRerunButton(),this._renderVisualizationsButton(),this._renderToolHelpButton()])}return t.concat([this._renderRerunButton(),this._renderToolHelpButton()])},_renderErrButton:function(){var t=this;return(0,h.default)({title:(0,m.default)("View or report this error"),href:Galaxy.root+"datasets/error?dataset_id="+this.model.attributes.id,classes:"report-error-btn",faIcon:"fa-bug",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/error",{dataset_id:t.model.attributes.id}))}})},_renderRerunButton:function(){var t=this.model.get("creating_job");if(this.model.get("rerunnable"))return(0,h.default)({title:(0,m.default)("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("/",{job_id:t}))}})},_renderVisualizationsButton:function(){var t=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||_.isEmpty(t))return null;if(!_.isObject(t[0]))return this.warn("Visualizations have been switched off"),null;var e=$(this.templates.visualizations(t,this));return e.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(e.find(".visualization-link").addBack(".visualization-link")),e},_addScratchBookFn:function(t){t.click(function(t){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:"Visualization",url:$(this).attr("href")}),t.preventDefault(),t.stopPropagation())})},_renderTags:function(t){if(this.hasUser){var e=this;this.tagsEditor=new c.default.TagsEditor({model:this.model,el:t.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){e.tagsEditorShown=!0},onhide:function(){e.tagsEditorShown=!1},$activator:(0,h.default)({title:(0,m.default)("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(t.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(t){if(this.hasUser){var e=this;this.annotationEditor=new f.default.AnnotationEditor({model:this.model,el:t.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){e.annotationEditorShown=!0},onhide:function(){e.annotationEditorShown=!1},$activator:(0,h.default)({title:(0,m.default)("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(t.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(t){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var e=$('<a class="value">?</a>').attr("href",this.model.urls.edit).attr("target","_top");t.find(".dbkey .value").replaceWith(e)}},events:_.extend(_.clone(p.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(t){this.trigger("edit",this,t)},"click .delete-btn":function(t){this.trigger("delete",this,t)},"click .rerun-btn":function(t){this.trigger("rerun",this,t)},"click .report-err-btn":function(t){this.trigger("report-err",this,t)},"click .visualization-btn":function(t){this.trigger("visualize",this,t)},"click .dbkey a":function(t){this.trigger("edit",this,t)}}),_clickUndeleteLink:function(t){return this.model.undelete(),!1},_clickPurgeLink:function(t){return confirm((0,m.default)("This will permanently remove the data in your dataset. Are you sure?"))&&this.model.purge(),!1},toString:function(){return"HDAEditView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=_.extend({},p.prototype.templates.warnings,{failed_metadata:g.default.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','<div class="failed_metadata-warning warningmessagesmall">',(0,m.default)("An error occurred setting the metadata for this dataset"),'<br /><a href="<%- dataset.urls.edit %>" target="_top">',(0,m.default)("Set it manually or retry auto-detection"),"</a>","</div>","<% } %>"],"dataset"),deleted:g.default.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,m.default)("This dataset has been deleted"),'<br /><a class="undelete-link" href="javascript:void(0);">',(0,m.default)("Undelete it"),"</a>","<% if( view.purgeAllowed ){ %>",'<br /><a class="purge-link" href="javascript:void(0);">',(0,m.default)("Permanently remove it from disk"),"</a>","<% } %>","</div>","<% } %>"],"dataset")}),e=g.default.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'<a class="visualization-link icon-btn" href="<%- visualizations[0].href %>"',' target="<%- visualizations[0].target %>" title="',(0,m.default)("Visualize in"),' <%- visualizations[0].html %>">','<span class="fa fa-bar-chart-o"></span>',"</a>","<% } else { %>",'<div class="visualizations-dropdown dropdown icon-btn">','<a data-toggle="dropdown" title="',(0,m.default)("Visualize"),'">','<span class="fa fa-bar-chart-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu">',"<% _.each( visualizations, function( visualization ){ %>",'<li><a class="visualization-link" href="<%- visualization.href %>"',' target="<%- visualization.target %>">',"<%- visualization.html %>","</a></li>","<% }); %>","</ul>","</div>","<% } %>"],"visualizations");return _.extend({},p.prototype.templates,{warnings:t,visualizations:e})}(),t.default={DatasetListItemEdit:v}});
\ No newline at end of file
+define("mvc/dataset/dataset-li-edit",["exports","mvc/dataset/states","mvc/dataset/dataset-li","mvc/tag","mvc/annotation","ui/fa-icon-button","mvc/base-mvc","utils/localization"],function(t,e,a,i,n,r,o,s){"use strict";function l(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var d=l(e),u=l(a),c=l(i),f=l(n),h=l(r),g=l(o),m=l(s),p=u.default.DatasetListItemView,v=p.extend({initialize:function(t){p.prototype.initialize.call(this,t),this.hasUser=t.hasUser,this.purgeAllowed=t.purgeAllowed||!1,this.tagsEditorShown=t.tagsEditorShown||!1,this.annotationEditorShown=t.annotationEditorShown||!1},_renderPrimaryActions:function(){var t=p.prototype._renderPrimaryActions.call(this);return this.model.get("state")===d.default.NOT_VIEWABLE?t:p.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){var t=this;if(this.model.get("state")===d.default.DISCARDED||!this.model.get("accessible"))return null;var e=this.model.get("purged"),a=this.model.get("deleted"),i={title:(0,m.default)("Edit attributes"),href:Galaxy.root+"datasets/edit?dataset_id="+this.model.attributes.id,faIcon:"fa-pencil",classes:"edit-btn",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/edit",{dataset_id:t.model.attributes.id}))}};return a||e?(i.disabled=!0,e?i.title=(0,m.default)("Cannot edit attributes of datasets removed from disk"):a&&(i.title=(0,m.default)("Undelete dataset to edit attributes"))):_.contains([d.default.UPLOAD,d.default.NEW],this.model.get("state"))&&(i.disabled=!0,i.title=(0,m.default)("This dataset is not yet editable")),(0,h.default)(i)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var t=this,e=this.model.isDeletedOrPurged();return(0,h.default)({title:e?(0,m.default)("Dataset is already deleted"):(0,m.default)("Delete"),disabled:e,faIcon:"fa-times",classes:"delete-btn",onclick:function(){t.$el.find(".icon-btn.delete-btn").trigger("mouseout"),t.model.delete()}})},_renderDetails:function(){var t=p.prototype._renderDetails.call(this),e=this.model.get("state");return!this.model.isDeletedOrPurged()&&_.contains([d.default.OK,d.default.FAILED_METADATA],e)&&(this._renderTags(t),this._renderAnnotation(t),this._makeDbkeyEditLink(t)),this._setUpBehaviors(t),t},_renderToolHelpButton:function(){var t=this.model.attributes.dataset_id,e=this.model.attributes.creating_job,a=this,i=function(e){var i='<div id="thdiv-'+t+'" class="toolhelp">';e.name&&e.help?(i+="<strong>Tool help for "+e.name+"</strong><hr/>",i+=e.help):i+="<strong>Tool help is unavailable for this dataset.</strong><hr/>",i+="</div>",a.$el.find(".details").append($.parseHTML(i))},n=function(t){$.ajax({url:Galaxy.root+"api/tools/"+t.tool_id+"/build"}).done(function(t){i(t)}).fail(function(){i({})})};return null===Galaxy.user.id?null:(0,h.default)({title:(0,m.default)("Tool Help"),classes:"icon-btn",href:"#",faIcon:"fa-question",onclick:function(){a.$el.find(".toolhelp").length>0?a.$el.find(".toolhelp").toggle():$.ajax({url:Galaxy.root+"api/jobs/"+e}).done(function(t){n(t)}).fail(function(){console.log('Failed at recovering job information from the  Galaxy API for job id "'+e+'".')})}})},_renderSecondaryActions:function(){var t=p.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case d.default.UPLOAD:case d.default.NOT_VIEWABLE:return t;case d.default.ERROR:return t.unshift(this._renderErrButton()),t.concat([this._renderRerunButton(),this._renderToolHelpButton()]);case d.default.OK:case d.default.FAILED_METADATA:return t.concat([this._renderRerunButton(),this._renderVisualizationsButton(),this._renderToolHelpButton()])}return t.concat([this._renderRerunButton(),this._renderToolHelpButton()])},_renderErrButton:function(){var t=this;return(0,h.default)({title:(0,m.default)("View or report this error"),href:Galaxy.root+"datasets/error?dataset_id="+this.model.attributes.id,classes:"report-error-btn",faIcon:"fa-bug",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/error",{dataset_id:t.model.attributes.id}))}})},_renderRerunButton:function(){var t=this.model.get("creating_job");if(this.model.get("rerunnable"))return(0,h.default)({title:(0,m.default)("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("/",{job_id:t}))}})},_renderVisualizationsButton:function(){var t=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||_.isEmpty(t))return null;if(!_.isObject(t[0]))return this.warn("Visualizations have been switched off"),null;var e=$(this.templates.visualizations(t,this));return e.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(e.find(".visualization-link").addBack(".visualization-link")),e},_addScratchBookFn:function(t){t.click(function(t){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,m.default)("Visualization"),url:$(this).attr("href")}),t.preventDefault(),t.stopPropagation())})},_renderTags:function(t){if(this.hasUser){var e=this;this.tagsEditor=new c.default.TagsEditor({model:this.model,el:t.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){e.tagsEditorShown=!0},onhide:function(){e.tagsEditorShown=!1},$activator:(0,h.default)({title:(0,m.default)("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(t.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(t){if(this.hasUser){var e=this;this.annotationEditor=new f.default.AnnotationEditor({model:this.model,el:t.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){e.annotationEditorShown=!0},onhide:function(){e.annotationEditorShown=!1},$activator:(0,h.default)({title:(0,m.default)("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(t.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(t){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var e=$('<a class="value">?</a>').attr("href",this.model.urls.edit).attr("target","_top");t.find(".dbkey .value").replaceWith(e)}},events:_.extend(_.clone(p.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(t){this.trigger("edit",this,t)},"click .delete-btn":function(t){this.trigger("delete",this,t)},"click .rerun-btn":function(t){this.trigger("rerun",this,t)},"click .report-err-btn":function(t){this.trigger("report-err",this,t)},"click .visualization-btn":function(t){this.trigger("visualize",this,t)},"click .dbkey a":function(t){this.trigger("edit",this,t)}}),_clickUndeleteLink:function(t){return this.model.undelete(),!1},_clickPurgeLink:function(t){return confirm((0,m.default)("This will permanently remove the data in your dataset. Are you sure?"))&&this.model.purge(),!1},toString:function(){return"HDAEditView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=_.extend({},p.prototype.templates.warnings,{failed_metadata:g.default.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','<div class="failed_metadata-warning warningmessagesmall">',(0,m.default)("An error occurred setting the metadata for this dataset"),'<br /><a href="<%- dataset.urls.edit %>" target="_top">',(0,m.default)("Set it manually or retry auto-detection"),"</a>","</div>","<% } %>"],"dataset"),deleted:g.default.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,m.default)("This dataset has been deleted"),'<br /><a class="undelete-link" href="javascript:void(0);">',(0,m.default)("Undelete it"),"</a>","<% if( view.purgeAllowed ){ %>",'<br /><a class="purge-link" href="javascript:void(0);">',(0,m.default)("Permanently remove it from disk"),"</a>","<% } %>","</div>","<% } %>"],"dataset")}),e=g.default.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'<a class="visualization-link icon-btn" href="<%- visualizations[0].href %>"',' target="<%- visualizations[0].target %>" title="',(0,m.default)("Visualize in"),' <%- visualizations[0].html %>">','<span class="fa fa-bar-chart-o"></span>',"</a>","<% } else { %>",'<div class="visualizations-dropdown dropdown icon-btn">','<a data-toggle="dropdown" title="',(0,m.default)("Visualize"),'">','<span class="fa fa-bar-chart-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu">',"<% _.each( visualizations, function( visualization ){ %>",'<li><a class="visualization-link" href="<%- visualization.href %>"',' target="<%- visualization.target %>">',"<%- visualization.html %>","</a></li>","<% }); %>","</ul>","</div>","<% } %>"],"visualizations");return _.extend({},p.prototype.templates,{warnings:t,visualizations:e})}(),t.default={DatasetListItemEdit:v}});
\ No newline at end of file
diff --git a/static/scripts/mvc/dataset/dataset-li.js b/static/scripts/mvc/dataset/dataset-li.js
index ecb21b304e9..59a33660351 100644
--- a/static/scripts/mvc/dataset/dataset-li.js
+++ b/static/scripts/mvc/dataset/dataset-li.js
@@ -1 +1 @@
-define("mvc/dataset/dataset-li",["exports","mvc/list/list-item","mvc/dataset/states","ui/fa-icon-button","mvc/base-mvc","utils/localization"],function(e,t,a,s,i,d){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var n=l(t),r=l(a),o=l(s),u=l(i),p=l(d),f=n.default.ListItemView,c=f.extend({_logNamespace:"dataset",className:f.prototype.className+" dataset",id:function(){return["dataset",this.model.get("id")].join("-")},initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log(this+".initialize:",e),f.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_setUpListeners:function(){f.prototype._setUpListeners.call(this);var e=this;return e.listenTo(e.model,{change:function(t){e.model.changedAttributes().state&&e.model.inReadyState()&&e.expanded&&!e.model.hasDetails()?e.model.fetch({silent:!0}).done(function(){e.render()}):_.has(t.changed,"tags")&&1===_.keys(t.changed).length?e.$(".nametags").html(e._renderNametags()):e.render()}})},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):jQuery.when()},remove:function(e,t){var a=this;e=e||this.fxSpeed,this.$el.fadeOut(e,function(){Backbone.View.prototype.remove.call(a),t&&t.call(a)})},_swapNewRender:function(e){return f.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var e=this.model.get("state");if(e===r.default.NOT_VIEWABLE||e===r.default.DISCARDED||!this.model.get("accessible"))return null;var t={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))t.disabled=!0,t.title=(0,p.default)("Cannot display datasets removed from disk");else if(e===r.default.UPLOAD)t.disabled=!0,t.title=(0,p.default)("This dataset must finish uploading before it can be viewed");else if(e===r.default.NEW)t.disabled=!0,t.title=(0,p.default)("This dataset is not yet viewable");else{t.title=(0,p.default)("View data"),t.href=this.model.urls.display;var a=this;t.onclick=function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.addDataset(a.model.get("id")),e.preventDefault())}}return t.faIcon="fa-eye",(0,o.default)(t)},_renderDetails:function(){if(this.model.get("state")===r.default.NOT_VIEWABLE)return $(this.templates.noAccess(this.model.toJSON(),this));var e=f.prototype._renderDetails.call(this);return e.find(".actions .left").empty().append(this._renderSecondaryActions()),e.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),e.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(e),e},_renderSummary:function(){var e=this.model.toJSON(),t=this.templates.summaries[e.state];return(t=t||this.templates.summaries.unknown)(e,this)},_renderDetailMessages:function(){var e=this,t=$('<div class="detail-messages"></div>'),a=e.model.toJSON();return _.each(e.templates.detailMessages,function(s){t.append($(s(a,e)))}),t},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case r.default.NOT_VIEWABLE:return[];case r.default.OK:case r.default.FAILED_METADATA:case r.default.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return(0,o.default)({title:(0,p.default)("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle",onclick:function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:"Dataset details",url:this.href}),e.preventDefault(),e.stopPropagation())}})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:_.isEmpty(this.model.get("meta_files"))?$(['<a class="download-btn icon-btn" ','href="',this.model.urls.download,'" title="'+(0,p.default)("Download")+'" download>','<span class="fa fa-floppy-o"></span>',"</a>"].join("")):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var e=this.model.urls;return $(['<div class="metafile-dropdown dropdown">','<a class="download-btn icon-btn" href="javascript:void(0)" data-toggle="dropdown"',' title="'+(0,p.default)("Download")+'">','<span class="fa fa-floppy-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu" aria-labelledby="dLabel">','<li><a href="'+e.download+'" download>',(0,p.default)("Download dataset"),"</a></li>",_.map(this.model.get("meta_files"),function(t){return['<li><a href="',e.meta_download+t.file_type,'">',(0,p.default)("Download")," ",t.file_type,"</a></li>"].join("")}).join("\n"),"</ul>","</div>"].join("\n"))},_renderNametags:function(){return _.template(["<% _.each(_.sortBy(_.uniq(tags), function(x) { return x }), function(tag){ %>",'<% if (tag.indexOf("name:") == 0){ %>','<span class="label label-info"><%- tag.slice(5) %></span>',"<% } %>","<% }); %>"].join(""))({tags:this.model.get("tags")})},events:_.extend(_.clone(f.prototype.events),{"click .display-btn":function(e){this.trigger("display",this,e)},"click .params-btn":function(e){this.trigger("params",this,e)},"click .download-btn":function(e){this.trigger("download",this,e)}}),toString:function(){return"DatasetListItemView("+(this.model?""+this.model:"(no model)")+")"}});c.prototype.templates=function(){var e=_.extend({},f.prototype.templates.warnings,{failed_metadata:u.default.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','<div class="warningmessagesmall">',(0,p.default)("An error occurred setting the metadata for this dataset"),"</div>","<% } %>"]),error:u.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,p.default)("There was an error getting the data for this dataset"),": <%- model.error %>","</div>","<% } %>"]),purged:u.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,p.default)("This dataset has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:u.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,p.default)("This dataset has been deleted"),"</div>","<% } %>"])}),t=u.default.wrapTemplate(['<div class="details">','<div class="summary"></div>','<div class="actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !dataset.deleted && !dataset.purged ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="display-applications"></div>',"<% if( dataset.peek ){ %>",'<pre class="dataset-peek"><%= dataset.peek %></pre>',"<% } %>","<% } %>","</div>"],"dataset"),a=u.default.wrapTemplate(['<div class="details">','<div class="summary">',(0,p.default)("You do not have permission to view this dataset"),"</div>","</div>"],"dataset"),s={};s[r.default.OK]=s[r.default.FAILED_METADATA]=u.default.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'<div class="blurb">','<span class="value"><%- dataset.misc_blurb %></span>',"</div>","<% } %>","<% if( dataset.file_ext ){ %>",'<div class="datatype">','<label class="prompt">',(0,p.default)("format"),"</label>",'<span class="value"><%- dataset.file_ext %></span>',"</div>","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'<div class="dbkey">','<label class="prompt">',(0,p.default)("database"),"</label>",'<span class="value">',"<%- dataset.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( dataset.misc_info ){ %>",'<div class="info">','<span class="value"><%- dataset.misc_info %></span>',"</div>","<% } %>"],"dataset"),s[r.default.NEW]=u.default.wrapTemplate(["<div>",(0,p.default)("This is a new dataset and not all of its data are available yet"),"</div>"],"dataset"),s[r.default.NOT_VIEWABLE]=u.default.wrapTemplate(["<div>",(0,p.default)("You do not have permission to view this dataset"),"</div>"],"dataset"),s[r.default.DISCARDED]=u.default.wrapTemplate(["<div>",(0,p.default)("The job creating this dataset was cancelled before completion"),"</div>"],"dataset"),s[r.default.QUEUED]=u.default.wrapTemplate(["<div>",(0,p.default)("This job is waiting to run"),"</div>"],"dataset"),s[r.default.RUNNING]=u.default.wrapTemplate(["<div>",(0,p.default)("This job is currently running"),"</div>"],"dataset"),s[r.default.UPLOAD]=u.default.wrapTemplate(["<div>",(0,p.default)("This dataset is currently uploading"),"</div>"],"dataset"),s[r.default.SETTING_METADATA]=u.default.wrapTemplate(["<div>",(0,p.default)("Metadata is being auto-detected"),"</div>"],"dataset"),s[r.default.PAUSED]=u.default.wrapTemplate(["<div>",(0,p.default)('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"</div>"],"dataset"),s[r.default.ERROR]=u.default.wrapTemplate(["<% if( !dataset.purged ){ %>","<div><%- dataset.misc_blurb %></div>","<% } %>",'<span class="help-text">',(0,p.default)("An error occurred with this dataset"),":</span>",'<div class="job-error-text"><%- dataset.misc_info %></div>'],"dataset"),s[r.default.EMPTY]=u.default.wrapTemplate(["<div>",(0,p.default)("No data"),": <i><%- dataset.misc_blurb %></i></div>"],"dataset"),s.unknown=u.default.wrapTemplate(['<div>Error: unknown dataset state: "<%- dataset.state %>"</div>'],"dataset");var i={resubmitted:u.default.wrapTemplate(["<% if( model.resubmitted ){ %>",'<div class="resubmitted-msg infomessagesmall">',(0,p.default)("The job creating this dataset has been resubmitted"),"</div>","<% } %>"])},d=u.default.wrapTemplate(["<% _.each( apps, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%- link.target %>" href="<%- link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>"],"apps");return _.extend({},f.prototype.templates,{warnings:e,details:t,noAccess:a,summaries:s,detailMessages:i,displayApplications:d})}(),e.default={DatasetListItemView:c}});
\ No newline at end of file
+define("mvc/dataset/dataset-li",["exports","mvc/list/list-item","mvc/dataset/states","ui/fa-icon-button","mvc/base-mvc","utils/localization"],function(e,t,a,s,i,d){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var n=l(t),r=l(a),o=l(s),u=l(i),p=l(d),f=n.default.ListItemView,c=f.extend({_logNamespace:"dataset",className:f.prototype.className+" dataset",id:function(){return["dataset",this.model.get("id")].join("-")},initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log(this+".initialize:",e),f.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_setUpListeners:function(){f.prototype._setUpListeners.call(this);var e=this;return e.listenTo(e.model,{change:function(t){e.model.changedAttributes().state&&e.model.inReadyState()&&e.expanded&&!e.model.hasDetails()?e.model.fetch({silent:!0}).done(function(){e.render()}):_.has(t.changed,"tags")&&1===_.keys(t.changed).length?e.$(".nametags").html(e._renderNametags()):e.render()}})},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):jQuery.when()},remove:function(e,t){var a=this;e=e||this.fxSpeed,this.$el.fadeOut(e,function(){Backbone.View.prototype.remove.call(a),t&&t.call(a)})},_swapNewRender:function(e){return f.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var e=this.model.get("state");if(e===r.default.NOT_VIEWABLE||e===r.default.DISCARDED||!this.model.get("accessible"))return null;var t={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))t.disabled=!0,t.title=(0,p.default)("Cannot display datasets removed from disk");else if(e===r.default.UPLOAD)t.disabled=!0,t.title=(0,p.default)("This dataset must finish uploading before it can be viewed");else if(e===r.default.NEW)t.disabled=!0,t.title=(0,p.default)("This dataset is not yet viewable");else{t.title=(0,p.default)("View data"),t.href=this.model.urls.display;var a=this;t.onclick=function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.addDataset(a.model.get("id")),e.preventDefault())}}return t.faIcon="fa-eye",(0,o.default)(t)},_renderDetails:function(){if(this.model.get("state")===r.default.NOT_VIEWABLE)return $(this.templates.noAccess(this.model.toJSON(),this));var e=f.prototype._renderDetails.call(this);return e.find(".actions .left").empty().append(this._renderSecondaryActions()),e.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),e.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(e),e},_renderSummary:function(){var e=this.model.toJSON(),t=this.templates.summaries[e.state];return(t=t||this.templates.summaries.unknown)(e,this)},_renderDetailMessages:function(){var e=this,t=$('<div class="detail-messages"></div>'),a=e.model.toJSON();return _.each(e.templates.detailMessages,function(s){t.append($(s(a,e)))}),t},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case r.default.NOT_VIEWABLE:return[];case r.default.OK:case r.default.FAILED_METADATA:case r.default.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return(0,o.default)({title:(0,p.default)("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle",onclick:function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,p.default)("Dataset details"),url:this.href}),e.preventDefault(),e.stopPropagation())}})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:_.isEmpty(this.model.get("meta_files"))?$(['<a class="download-btn icon-btn" ','href="',this.model.urls.download,'" title="'+(0,p.default)("Download")+'" download>','<span class="fa fa-floppy-o"></span>',"</a>"].join("")):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var e=this.model.urls;return $(['<div class="metafile-dropdown dropdown">','<a class="download-btn icon-btn" href="javascript:void(0)" data-toggle="dropdown"',' title="'+(0,p.default)("Download")+'">','<span class="fa fa-floppy-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu" aria-labelledby="dLabel">','<li><a href="'+e.download+'" download>',(0,p.default)("Download dataset"),"</a></li>",_.map(this.model.get("meta_files"),function(t){return['<li><a href="',e.meta_download+t.file_type,'">',(0,p.default)("Download")," ",t.file_type,"</a></li>"].join("")}).join("\n"),"</ul>","</div>"].join("\n"))},_renderNametags:function(){return _.template(["<% _.each(_.sortBy(_.uniq(tags), function(x) { return x }), function(tag){ %>",'<% if (tag.indexOf("name:") == 0){ %>','<span class="label label-info"><%- tag.slice(5) %></span>',"<% } %>","<% }); %>"].join(""))({tags:this.model.get("tags")})},events:_.extend(_.clone(f.prototype.events),{"click .display-btn":function(e){this.trigger("display",this,e)},"click .params-btn":function(e){this.trigger("params",this,e)},"click .download-btn":function(e){this.trigger("download",this,e)}}),toString:function(){return"DatasetListItemView("+(this.model?""+this.model:"(no model)")+")"}});c.prototype.templates=function(){var e=_.extend({},f.prototype.templates.warnings,{failed_metadata:u.default.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','<div class="warningmessagesmall">',(0,p.default)("An error occurred setting the metadata for this dataset"),"</div>","<% } %>"]),error:u.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,p.default)("There was an error getting the data for this dataset"),": <%- model.error %>","</div>","<% } %>"]),purged:u.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,p.default)("This dataset has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:u.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,p.default)("This dataset has been deleted"),"</div>","<% } %>"])}),t=u.default.wrapTemplate(['<div class="details">','<div class="summary"></div>','<div class="actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !dataset.deleted && !dataset.purged ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="display-applications"></div>',"<% if( dataset.peek ){ %>",'<pre class="dataset-peek"><%= dataset.peek %></pre>',"<% } %>","<% } %>","</div>"],"dataset"),a=u.default.wrapTemplate(['<div class="details">','<div class="summary">',(0,p.default)("You do not have permission to view this dataset"),"</div>","</div>"],"dataset"),s={};s[r.default.OK]=s[r.default.FAILED_METADATA]=u.default.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'<div class="blurb">','<span class="value"><%- dataset.misc_blurb %></span>',"</div>","<% } %>","<% if( dataset.file_ext ){ %>",'<div class="datatype">','<label class="prompt">',(0,p.default)("format"),"</label>",'<span class="value"><%- dataset.file_ext %></span>',"</div>","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'<div class="dbkey">','<label class="prompt">',(0,p.default)("database"),"</label>",'<span class="value">',"<%- dataset.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( dataset.misc_info ){ %>",'<div class="info">','<span class="value"><%- dataset.misc_info %></span>',"</div>","<% } %>"],"dataset"),s[r.default.NEW]=u.default.wrapTemplate(["<div>",(0,p.default)("This is a new dataset and not all of its data are available yet"),"</div>"],"dataset"),s[r.default.NOT_VIEWABLE]=u.default.wrapTemplate(["<div>",(0,p.default)("You do not have permission to view this dataset"),"</div>"],"dataset"),s[r.default.DISCARDED]=u.default.wrapTemplate(["<div>",(0,p.default)("The job creating this dataset was cancelled before completion"),"</div>"],"dataset"),s[r.default.QUEUED]=u.default.wrapTemplate(["<div>",(0,p.default)("This job is waiting to run"),"</div>"],"dataset"),s[r.default.RUNNING]=u.default.wrapTemplate(["<div>",(0,p.default)("This job is currently running"),"</div>"],"dataset"),s[r.default.UPLOAD]=u.default.wrapTemplate(["<div>",(0,p.default)("This dataset is currently uploading"),"</div>"],"dataset"),s[r.default.SETTING_METADATA]=u.default.wrapTemplate(["<div>",(0,p.default)("Metadata is being auto-detected"),"</div>"],"dataset"),s[r.default.PAUSED]=u.default.wrapTemplate(["<div>",(0,p.default)('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"</div>"],"dataset"),s[r.default.ERROR]=u.default.wrapTemplate(["<% if( !dataset.purged ){ %>","<div><%- dataset.misc_blurb %></div>","<% } %>",'<span class="help-text">',(0,p.default)("An error occurred with this dataset"),":</span>",'<div class="job-error-text"><%- dataset.misc_info %></div>'],"dataset"),s[r.default.EMPTY]=u.default.wrapTemplate(["<div>",(0,p.default)("No data"),": <i><%- dataset.misc_blurb %></i></div>"],"dataset"),s.unknown=u.default.wrapTemplate(['<div>Error: unknown dataset state: "<%- dataset.state %>"</div>'],"dataset");var i={resubmitted:u.default.wrapTemplate(["<% if( model.resubmitted ){ %>",'<div class="resubmitted-msg infomessagesmall">',(0,p.default)("The job creating this dataset has been resubmitted"),"</div>","<% } %>"])},d=u.default.wrapTemplate(["<% _.each( apps, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%- link.target %>" href="<%- link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>"],"apps");return _.extend({},f.prototype.templates,{warnings:e,details:t,noAccess:a,summaries:s,detailMessages:i,displayApplications:d})}(),e.default={DatasetListItemView:c}});
\ No newline at end of file
diff --git a/static/scripts/mvc/form/form-repeat.js b/static/scripts/mvc/form/form-repeat.js
index e8e2bf5d101..3f0be29d6bc 100644
--- a/static/scripts/mvc/form/form-repeat.js
+++ b/static/scripts/mvc/form/form-repeat.js
@@ -1 +1 @@
-define("mvc/form/form-repeat",["exports","utils/utils","mvc/ui/ui-portlet","mvc/ui/ui-misc"],function(t,e,i,n){"use strict";function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0}),t.View=void 0;var s=o(e),l=o(i),a=o(n),d=t.View=Backbone.View.extend({initialize:function(t){this.list={},this.options=s.default.merge(t,{title:"Repeat",empty_text:"Not available.",max:null,min:null}),this.button_new=new a.default.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title,tooltip:"Add new "+this.options.title+" block",cls:"ui-button-icon ui-clear-float form-repeat-add",onclick:function(){t.onnew&&t.onnew()}}),this.setElement($("<div/>").append(this.$list=$("<div/>")).append($("<div/>").append(this.button_new.$el)))},size:function(){return _.size(this.list)},add:function(t){if(t.id&&!this.list[t.id]){var e=new a.default.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain form-repeat-delete",onclick:function(){t.ondel&&t.ondel()}}),i=new l.default.View({id:t.id,title:"placeholder",cls:t.cls||"ui-portlet-repeat",operations:{button_delete:e}});i.append(t.$el),i.$el.addClass("section-row").hide(),this.list[t.id]=i,this.$list.append(i.$el.fadeIn("fast")),this.options.max>0&&this.size()>=this.options.max&&this.button_new.disable(),this._refresh()}else Galaxy.emit.debug("form-repeat::add()","Duplicate or invalid repeat block id.")},del:function(t){this.list[t]?(this.$list.find("#"+t).remove(),delete this.list[t],this.button_new.enable(),this._refresh()):Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.")},delAll:function(){for(var t in this.list)this.del(t)},hideOptions:function(){this.button_new.$el.hide(),_.each(this.list,function(t){t.hideOperation("button_delete")}),_.isEmpty(this.list)&&this.$el.append($("<div/>").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),i[this.size()>this.options.min?"showOperation":"hideOperation"]("button_delete")}}});t.default={View:d}});
\ No newline at end of file
+define("mvc/form/form-repeat",["exports","utils/localization","utils/utils","mvc/ui/ui-portlet","mvc/ui/ui-misc"],function(t,e,i,n,l){"use strict";function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0}),t.View=void 0;var s=o(e),a=o(i),d=o(n),u=o(l),r=t.View=Backbone.View.extend({initialize:function(t){this.list={},this.options=a.default.merge(t,{title:(0,s.default)("Repeat"),empty_text:"Not available.",max:null,min:null}),this.button_new=new u.default.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title,tooltip:"Add new "+this.options.title+" block",cls:"ui-button-icon ui-clear-float form-repeat-add",onclick:function(){t.onnew&&t.onnew()}}),this.setElement($("<div/>").append(this.$list=$("<div/>")).append($("<div/>").append(this.button_new.$el)))},size:function(){return _.size(this.list)},add:function(t){if(t.id&&!this.list[t.id]){var e=new u.default.ButtonIcon({icon:"fa-trash-o",tooltip:(0,s.default)("Delete this repeat block"),cls:"ui-button-icon-plain form-repeat-delete",onclick:function(){t.ondel&&t.ondel()}}),i=new d.default.View({id:t.id,title:(0,s.default)("placeholder"),cls:t.cls||"ui-portlet-repeat",operations:{button_delete:e}});i.append(t.$el),i.$el.addClass("section-row").hide(),this.list[t.id]=i,this.$list.append(i.$el.fadeIn("fast")),this.options.max>0&&this.size()>=this.options.max&&this.button_new.disable(),this._refresh()}else Galaxy.emit.debug("form-repeat::add()","Duplicate or invalid repeat block id.")},del:function(t){this.list[t]?(this.$list.find("#"+t).remove(),delete this.list[t],this.button_new.enable(),this._refresh()):Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.")},delAll:function(){for(var t in this.list)this.del(t)},hideOptions:function(){this.button_new.$el.hide(),_.each(this.list,function(t){t.hideOperation("button_delete")}),_.isEmpty(this.list)&&this.$el.append($("<div/>").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),i[this.size()>this.options.min?"showOperation":"hideOperation"]("button_delete")}}});t.default={View:r}});
\ No newline at end of file
diff --git a/static/scripts/mvc/history/history-list.js b/static/scripts/mvc/history/history-list.js
index 8f1f989533b..39454470bd2 100644
--- a/static/scripts/mvc/history/history-list.js
+++ b/static/scripts/mvc/history/history-list.js
@@ -1 +1 @@
-define("mvc/history/history-list",["exports","utils/utils","mvc/grid/grid-view","mvc/history/history-model","mvc/history/copy-dialog"],function(t,e,i,o,n){"use strict";function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var r=a(e),l=a(i),d=a(o),s=a(n),c=Backbone.View.extend({title:"Histories",initialize:function(t){var e=this;this.setElement($("<div/>")),this.model=new Backbone.Model,r.default.get({url:Galaxy.root+"history/"+t.action_id+"?"+$.param(Galaxy.params),success:function(t){t.dict_format=!0,_.each(t.operations,function(t){"Copy"==t.label&&(t.onclick=function(t){e._showCopyDialog(t)})}),e.model.set(t),e.render()}})},render:function(){var t=new l.default(this.model.attributes);this.$el.empty().append(t.$el)},_showCopyDialog:function(t){var e=new d.default.History({id:t});e.fetch().fail(function(){alert("History could not be fetched. Please contact an administrator")}).done(function(){(0,s.default)(e,{}).done(function(){window.parent&&window.parent.Galaxy&&window.parent.Galaxy.currHistoryPanel&&window.parent.Galaxy.currHistoryPanel.loadCurrentHistory(),window.location.reload(!0)})})}});t.default={View:c}});
\ No newline at end of file
+define("mvc/history/history-list",["exports","utils/localization","utils/utils","mvc/grid/grid-view","mvc/history/history-model","mvc/history/copy-dialog"],function(t,e,i,o,n,a){"use strict";function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var l=r(e),d=r(i),s=r(o),c=r(n),u=r(a),f=Backbone.View.extend({title:(0,l.default)("Histories"),initialize:function(t){var e=this;this.setElement($("<div/>")),this.model=new Backbone.Model,d.default.get({url:Galaxy.root+"history/"+t.action_id+"?"+$.param(Galaxy.params),success:function(t){t.dict_format=!0,_.each(t.operations,function(t){"Copy"==t.label&&(t.onclick=function(t){e._showCopyDialog(t)})}),e.model.set(t),e.render()}})},render:function(){var t=new s.default(this.model.attributes);this.$el.empty().append(t.$el)},_showCopyDialog:function(t){var e=new c.default.History({id:t});e.fetch().fail(function(){alert("History could not be fetched. Please contact an administrator")}).done(function(){(0,u.default)(e,{}).done(function(){window.parent&&window.parent.Galaxy&&window.parent.Galaxy.currHistoryPanel&&window.parent.Galaxy.currHistoryPanel.loadCurrentHistory(),window.location.reload(!0)})})}});t.default={View:f}});
\ No newline at end of file
diff --git a/static/scripts/mvc/library/library-dataset-view.js b/static/scripts/mvc/library/library-dataset-view.js
index 5d1a9ff6aee..2bc8e4df2d8 100644
--- a/static/scripts/mvc/library/library-dataset-view.js
+++ b/static/scripts/mvc/library/library-dataset-view.js
@@ -1 +1 @@
-define("mvc/library/library-dataset-view",["exports","libs/toastr","mvc/library/library-model","utils/utils","mvc/ui/ui-select"],function(t,e,s,i,a){"use strict";function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var r=o(e),n=o(s),l=o(i),d=o(a),c=Backbone.View.extend({el:"#center",model:null,options:{},defaults:{edit_mode:!1},events:{"click .toolbtn_modify_dataset":"enableModification","click .toolbtn_cancel_modifications":"render","click .toolbtn-download-dataset":"downloadDataset","click .toolbtn-import-dataset":"importIntoHistory","click .copy-link-to-clipboard":"copyToClipboard","click .make-private":"makeDatasetPrivate","click .remove-restrictions":"removeDatasetRestrictions","click .toolbtn_save_permissions":"savePermissions","click .toolbtn_save_modifications":"saveModifications"},select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(t){this.options=_.extend(this.options,t),this.fetchExtAndGenomes(),this.options.id&&this.fetchDataset()},fetchDataset:function(t){this.options=_.extend(this.options,t),this.model=new n.default.Item({id:this.options.id});var e=this;this.model.fetch({success:function(){e.options.show_permissions?e.showPermissions():e.options.show_version?e.fetchVersion():e.render()},error:function(t,e){void 0!==e.responseJSON?r.default.error(e.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):r.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(t){this.options=_.extend(this.options,t),$(".tooltip").remove();var e=this.templateDataset();this.$el.html(e({item:this.model})),$(".peek").html(this.model.get("peek")),$("#center [data-toggle]").tooltip()},fetchVersion:function(t){this.options=_.extend(this.options,t);var e=this;this.options.ldda_id?(this.ldda=new n.default.Ldda({id:this.options.ldda_id}),this.ldda.url=this.ldda.urlRoot+this.model.id+"/versions/"+this.ldda.id,this.ldda.fetch({success:function(){e.renderVersion()},error:function(t,e){void 0!==e.responseJSON?r.default.error(e.responseJSON.err_msg):r.default.error("An error occurred.")}})):(this.render(),r.default.error("Library dataset version requested but no id provided."))},renderVersion:function(){$(".tooltip").remove();var t=this.templateVersion();this.$el.html(t({item:this.model,ldda:this.ldda})),$(".peek").html(this.ldda.get("peek"))},enableModification:function(){$(".tooltip").remove();var t=this.templateModifyDataset();this.$el.html(t({item:this.model})),this.renderSelectBoxes({genome_build:this.model.get("genome_build"),file_ext:this.model.get("file_ext")}),$(".peek").html(this.model.get("peek")),$("#center [data-toggle]").tooltip()},downloadDataset:function(){var t=Galaxy.root+"api/libraries/datasets/download/uncompressed",e={ld_ids:this.id};this.processDownload(t,e)},processDownload:function(t,e,s){if(t&&e){e="string"==typeof e?e:$.param(e);var i="";$.each(e.split("&"),function(){var t=this.split("=");i+='<input type="hidden" name="'+t[0]+'" value="'+t[1]+'" />'}),$('<form action="'+t+'" method="'+(s||"post")+'">'+i+"</form>").appendTo("body").submit().remove(),r.default.info("Your download will begin soon.")}},importIntoHistory:function(){this.refreshUserHistoriesList(function(t){var e=t.templateBulkImportInModal();t.modal=Galaxy.modal,t.modal.show({closing_events:!0,title:"Import into History",body:e({histories:t.histories.models}),buttons:{Import:function(){t.importCurrentIntoHistory()},Close:function(){Galaxy.modal.hide()}}})})},refreshUserHistoriesList:function(t){var e=this;this.histories=new n.default.GalaxyHistories,this.histories.fetch({success:function(s){0===s.length?r.default.warning("You have to create history first. Click this to do so.","",{onclick:function(){window.location=Galaxy.root}}):t(e)},error:function(t,e){void 0!==e.responseJSON?r.default.error(e.responseJSON.err_msg):r.default.error("An error occurred.")}})},importCurrentIntoHistory:function(){this.modal.disableButton("Import");var t=this.modal.$("input[name=history_name]").val(),e=this;if(""!==t)$.post(Galaxy.root+"api/histories",{name:t}).done(function(t){e.processImportToHistory(t.id)}).fail(function(t,e,s){r.default.error("An error occurred.")}).always(function(){e.modal.enableButton("Import")});else{var s=$(this.modal.$el).find("select[name=dataset_import_single] option:selected").val();this.processImportToHistory(s),this.modal.enableButton("Import")}},processImportToHistory:function(t){var e=new n.default.HistoryItem;e.url=e.urlRoot+t+"/contents",jQuery.getJSON(Galaxy.root+"history/set_as_current?id="+t),e.save({content:this.id,source:"library"},{success:function(){Galaxy.modal.hide(),r.default.success("Dataset imported. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}})},error:function(t,e){void 0!==e.responseJSON?r.default.error("Dataset not imported. "+e.responseJSON.err_msg):r.default.error("An error occured. Dataset not imported. Please try again.")}})},showPermissions:function(t){var e=this.templateDatasetPermissions(),s=this;this.options=_.extend(this.options,t),$(".tooltip").remove(),void 0!==this.options.fetched_permissions&&(0===this.options.fetched_permissions.access_dataset_roles.length?this.model.set({is_unrestricted:!0}):this.model.set({is_unrestricted:!1})),this.$el.html(e({item:this.model,is_admin:Galaxy.config.is_admin_user})),$.get(Galaxy.root+"api/libraries/datasets/"+s.id+"/permissions?scope=current").done(function(t){s.prepareSelectBoxes({fetched_permissions:t,is_admin:Galaxy.config.is_admin_user})}).fail(function(){r.default.error("An error occurred while attempting to fetch dataset permissions.")}),$("#center [data-toggle]").tooltip(),$("#center").css("overflow","auto")},_serializeRoles:function(t){for(var e=[],s=0;s<t.length;s++)e.push(t[s][1]+":"+t[s][0].replace(":"," ").replace(","," &"));return e},prepareSelectBoxes:function(t){this.options=_.extend(this.options,t),this.accessSelectObject=new d.default.View(this._generate_select_options({selector:"access_perm",initialData:this._serializeRoles(this.options.fetched_permissions.access_dataset_roles)})),this.modifySelectObject=new d.default.View(this._generate_select_options({selector:"modify_perm",initialData:this._serializeRoles(this.options.fetched_permissions.modify_item_roles)})),this.manageSelectObject=new d.default.View(this._generate_select_options({selector:"manage_perm",initialData:this._serializeRoles(this.options.fetched_permissions.manage_dataset_roles)}))},_generate_select_options:function(t){var e={minimumInputLength:0,multiple:!0,placeholder:"Click to select a role",formatResult:function(t){return t.name+" type: "+t.type},formatSelection:function(t){return t.name},initSelection:function(t,e){var s=[];$(t.val().split(",")).each(function(){var t=this.split(":");s.push({id:t[0],name:t[1]})}),e(s)},dropdownCssClass:"bigdrop"};return e.container=this.$el.find("#"+t.selector),e.css=t.selector,e.initialData=t.initialData.join(","),e.ajax={url:Galaxy.root+"api/libraries/datasets/"+this.id+"/permissions?scope=available",dataType:"json",quietMillis:100,data:function(t,e){return{q:t,page_limit:10,page:e}},results:function(t,e){var s=10*e<t.total;return{results:t.roles,more:s}}},e},saveModifications:function(t){var e=!1,s=this.model,i=this.$el.find(".input_dataset_name").val();if(void 0!==i&&i!==s.get("name")){if(!(i.length>0))return void r.default.warning("Library dataset name has to be at least 1 character long.");s.set("name",i),e=!0}var a=this.$el.find(".input_dataset_misc_info").val();void 0!==a&&a!==s.get("misc_info")&&(s.set("misc_info",a),e=!0);var o=this.select_genome.$el.select2("data").id;void 0!==o&&o!==s.get("genome_build")&&(s.set("genome_build",o),e=!0);var n=this.select_extension.$el.select2("data").id;void 0!==n&&n!==s.get("file_ext")&&(s.set("file_ext",n),e=!0);var l=this;e?s.save(null,{patch:!0,success:function(t){l.render(),r.default.success("Changes to library dataset saved.")},error:function(t,e){void 0!==e.responseJSON?r.default.error(e.responseJSON.err_msg):r.default.error("An error occured while attempting to update the library dataset.")}}):(l.render(),r.default.info("Nothing has changed."))},copyToClipboard:function(t){t.preventDefault();var e=Backbone.history.location.href;-1!==e.lastIndexOf("/permissions")&&(e=e.substr(0,e.lastIndexOf("/permissions"))),window.prompt("Copy to clipboard: Ctrl+C, Enter",e)},makeDatasetPrivate:function(){var t=this;$.post(Galaxy.root+"api/libraries/datasets/"+t.id+"/permissions?action=make_private").done(function(e){t.model.set({is_unrestricted:!1}),t.showPermissions({fetched_permissions:e}),r.default.success("The dataset is now private to you.")}).fail(function(){r.default.error("An error occurred while attempting to make dataset private.")})},removeDatasetRestrictions:function(){var t=this;$.post(Galaxy.root+"api/libraries/datasets/"+t.id+"/permissions?action=remove_restrictions").done(function(e){t.model.set({is_unrestricted:!0}),t.showPermissions({fetched_permissions:e}),r.default.success("Access to this dataset is now unrestricted.")}).fail(function(){r.default.error("An error occurred while attempting to make dataset unrestricted.")})},_extractIds:function(t){for(var e=[],s=t.length-1;s>=0;s--)e.push(t[s].id);return e},savePermissions:function(t){var e=this,s=this._extractIds(this.accessSelectObject.$el.select2("data")),i=this._extractIds(this.manageSelectObject.$el.select2("data")),a=this._extractIds(this.modifySelectObject.$el.select2("data"));$.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=set_permissions",{"access_ids[]":s,"manage_ids[]":i,"modify_ids[]":a}).done(function(t){e.showPermissions({fetched_permissions:t}),r.default.success("Permissions saved.")}).fail(function(){r.default.error("An error occurred while attempting to set dataset permissions.")})},fetchExtAndGenomes:function(){var t=this;0==this.list_genomes.length&&l.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(e){for(var s in e)t.list_extensions.push({id:e[s].extension,text:e[s].extension,description:e[s].description,description_url:e[s].description_url});t.list_extensions.sort(function(t,e){return t.id>e.id?1:t.id<e.id?-1:0}),t.list_extensions.unshift(t.auto)}}),0==this.list_extensions.length&&l.default.get({url:Galaxy.root+"api/genomes",success:function(e){for(var s in e)t.list_genomes.push({id:e[s][1],text:e[s][0]});t.list_genomes.sort(function(t,e){return t.id>e.id?1:t.id<e.id?-1:0})}})},renderSelectBoxes:function(t){var e=this,s="?",i="auto";void 0!==t&&(void 0!==t.genome_build&&(s=t.genome_build),void 0!==t.file_ext&&(i=t.file_ext)),this.select_genome=new d.default.View({css:"dataset-genome-select",data:e.list_genomes,container:e.$el.find("#dataset_genome_select"),value:s}),this.select_extension=new d.default.View({css:"dataset-extension-select",data:e.list_extensions,container:e.$el.find("#dataset_extension_select"),value:i})},templateDataset:function(){return _.template(['<div class="library_style_container">','<div id="library_toolbar">','<button data-toggle="tooltip" data-placement="top" title="Download dataset" class="btn btn-default toolbtn-download-dataset primary-button toolbar-item" type="button">','<span class="fa fa-download"></span>',"&nbsp;Download","</button>",'<button data-toggle="tooltip" data-placement="top" title="Import dataset into history" class="btn btn-default toolbtn-import-dataset primary-button toolbar-item" type="button">','<span class="fa fa-book"></span>',"&nbsp;to History","</button>",'<% if (item.get("can_user_modify")) { %>','<button data-toggle="tooltip" data-placement="top" title="Modify library item" class="btn btn-default toolbtn_modify_dataset primary-button toolbar-item" type="button">','<span class="fa fa-pencil"></span>',"&nbsp;Modify","</button>","<% } %>",'<% if (item.get("can_user_manage")) { %>','<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" title="Manage permissions" class="btn btn-default toolbtn_change_permissions primary-button toolbar-item" type="button">','<span class="fa fa-group"></span>',"&nbsp;Permissions","</button>","</a>","<% } %>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<% if (item.get("is_unrestricted")) { %>',"<div>",'This dataset is unrestricted so everybody with the link can access it. Just share <span class="copy-link-to-clipboard"><a href=""a>this page</a></span>.',"</div>","<% } %>",'<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th class="dataset-first-column" scope="row" id="id_row" data-id="<%= _.escape(item.get("ldda_id")) %>">Name</th>','<td><%= _.escape(item.get("name")) %></td>',"</tr>",'<% if (item.get("file_ext")) { %>',"<tr>",'<th scope="row">Data type</th>','<td><%= _.escape(item.get("file_ext")) %></td>',"</tr>","<% } %>",'<% if (item.get("genome_build")) { %>',"<tr>",'<th scope="row">Genome build</th>','<td><%= _.escape(item.get("genome_build")) %></td>',"</tr>","<% } %>",'<% if (item.get("file_size")) { %>',"<tr>",'<th scope="row">Size</th>','<td><%= _.escape(item.get("file_size")) %></td>',"</tr>","<% } %>",'<% if (item.get("date_uploaded")) { %>',"<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(item.get("date_uploaded")) %></td>',"</tr>","<% } %>",'<% if (item.get("uploaded_by")) { %>',"<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(item.get("uploaded_by")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_data_lines")) { %>',"<tr>",'<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(item.get("metadata_data_lines")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_comment_lines")) { %>',"<tr>",'<th scope="row">Comment Lines</th>','<td scope="row"><%= _.escape(item.get("metadata_comment_lines")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_columns")) { %>',"<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(item.get("metadata_columns")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_column_types")) { %>',"<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(item.get("metadata_column_types")) %></td>',"</tr>","<% } %>",'<% if (item.get("message")) { %>',"<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(item.get("message")) %></td>',"</tr>","<% } %>",'<% if (item.get("misc_blurb")) { %>',"<tr>",'<th scope="row">Misc. blurb</th>','<td scope="row"><%= _.escape(item.get("misc_blurb")) %></td>',"</tr>","<% } %>",'<% if (item.get("misc_info")) { %>',"<tr>",'<th scope="row">Misc. info</th>','<td scope="row"><%= _.escape(item.get("misc_info")) %></td>',"</tr>","<% } %>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>",'<% if ( item.get("uuid") !== "ok" ) { %>',"<tr>",'<th scope="row">UUID</th>','<td scope="row"><%= _.escape(item.get("uuid")) %></td>',"</tr>","<% } %>",'<% if ( item.get("state") !== "ok" ) { %>',"<tr>",'<th scope="row">State</th>','<td scope="row"><%= _.escape(item.get("state")) %></td>',"</tr>","<% } %>","</table>",'<% if (item.get("job_stderr")) { %>',"<h4>Job Standard Error</h4>",'<pre class="code">','<%= _.escape(item.get("job_stderr")) %>',"</pre>","<% } %>",'<% if (item.get("job_stdout")) { %>',"<h4>Job Standard Output</h4>",'<pre class="code">','<%= _.escape(item.get("job_stdout")) %>',"</pre>","<% } %>","<div>",'<pre class="peek">',"</pre>","</div>",'<% if (item.get("has_versions")) { %>',"<div>","<h3>Expired versions:</h3>","<ul>",'<% _.each(item.get("expired_versions"), function(version) { %>','<li><a title="See details of this version" href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/versions/<%- version[0] %>"><%- version[1] %></a></li>',"<% }) %>","<ul>","</div>","<% } %>","</div>","</div>"].join(""))},templateVersion:function(){return _.template(['<div class="library_style_container">','<div id="library_toolbar">','<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>">','<button data-toggle="tooltip" data-placement="top" title="Go to latest dataset" class="btn btn-default primary-button toolbar-item" type="button">','<span class="fa fa-caret-left fa-lg"></span>',"&nbsp;Latest dataset","</button>","<a>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<div class="alert alert-warning">This is an expired version of the library dataset: <%= _.escape(item.get("name")) %></div>','<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th scope="row" id="id_row" data-id="<%= _.escape(ldda.id) %>">Name</th>','<td><%= _.escape(ldda.get("name")) %></td>',"</tr>",'<% if (ldda.get("file_ext")) { %>',"<tr>",'<th scope="row">Data type</th>','<td><%= _.escape(ldda.get("file_ext")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("genome_build")) { %>',"<tr>",'<th scope="row">Genome build</th>','<td><%= _.escape(ldda.get("genome_build")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("file_size")) { %>',"<tr>",'<th scope="row">Size</th>','<td><%= _.escape(ldda.get("file_size")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("date_uploaded")) { %>',"<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(ldda.get("date_uploaded")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("uploaded_by")) { %>',"<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(ldda.get("uploaded_by")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_data_lines")) { %>',"<tr>",'<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(ldda.get("metadata_data_lines")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_comment_lines")) { %>',"<tr>",'<th scope="row">Comment Lines</th>','<td scope="row"><%= _.escape(ldda.get("metadata_comment_lines")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_columns")) { %>',"<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(ldda.get("metadata_columns")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_column_types")) { %>',"<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(ldda.get("metadata_column_types")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("message")) { %>',"<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(ldda.get("message")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("misc_blurb")) { %>',"<tr>",'<th scope="row">Miscellaneous blurb</th>','<td scope="row"><%= _.escape(ldda.get("misc_blurb")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("misc_info")) { %>',"<tr>",'<th scope="row">Miscellaneous information</th>','<td scope="row"><%= _.escape(ldda.get("misc_info")) %></td>',"</tr>","<% } %>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>","</table>","<div>",'<pre class="peek">',"</pre>","</div>","</div>","</div>"].join(""))},templateModifyDataset:function(){return _.template(['<div class="library_style_container">','<div id="library_toolbar">','<button data-toggle="tooltip" data-placement="top" title="Cancel modifications" class="btn btn-default toolbtn_cancel_modifications primary-button toolbar-item" type="button">','<span class="fa fa-times"></span>',"&nbsp;Cancel","</button>",'<button data-toggle="tooltip" data-placement="top" title="Save modifications" class="btn btn-default toolbtn_save_modifications primary-button toolbar-item" type="button">','<span class="fa fa-floppy-o"></span>',"&nbsp;Save","</button>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th class="dataset-first-column" scope="row" id="id_row" data-id="<%= _.escape(item.get("ldda_id")) %>">Name</th>','<td><input class="input_dataset_name form-control" type="text" placeholder="name" value="<%= _.escape(item.get("name")) %>"></td>',"</tr>","<tr>",'<th scope="row">Data type</th>',"<td>",'<span id="dataset_extension_select" class="dataset-extension-select" />',"</td>","</tr>","<tr>",'<th scope="row">Genome build</th>',"<td>",'<span id="dataset_genome_select" class="dataset-genome-select" />',"</td>","</tr>","<tr>",'<th scope="row">Size</th>','<td><%= _.escape(item.get("file_size")) %></td>',"</tr>","<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(item.get("date_uploaded")) %></td>',"</tr>","<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(item.get("uploaded_by")) %></td>',"</tr>",'<tr scope="row">','<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(item.get("metadata_data_lines")) %></td>',"</tr>",'<th scope="row">Comment Lines</th>','<% if (item.get("metadata_comment_lines") === "") { %>','<td scope="row"><%= _.escape(item.get("metadata_comment_lines")) %></td>',"<% } else { %>",'<td scope="row">unknown</td>',"<% } %>","</tr>","<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(item.get("metadata_columns")) %></td>',"</tr>","<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(item.get("metadata_column_types")) %></td>',"</tr>","<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(item.get("message")) %></td>',"</tr>","<tr>",'<th scope="row">Misc. blurb</th>','<td scope="row"><%= _.escape(item.get("misc_blurb")) %></td>',"</tr>","<tr>",'<th scope="row">Misc. information</th>','<td><input class="input_dataset_misc_info form-control" type="text" placeholder="info" value="<%= _.escape(item.get("misc_info")) %>"></td>',"</tr>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>","</table>","<div>",'<pre class="peek">',"</pre>","</div>","</div>","</div>"].join(""))},templateDatasetPermissions:function(){return _.template(['<div class="library_style_container">','<div id="library_toolbar">','<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>">','<button data-toggle="tooltip" data-placement="top" title="Go back to dataset" class="btn btn-default primary-button toolbar-item" type="button">','<span class="fa fa-file-o"></span>',"&nbsp;Dataset Details","</button>","<a>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<h1>Dataset: <%= _.escape(item.get("name")) %></h1>','<div class="alert alert-warning">',"<% if (is_admin) { %>","You are logged in as an <strong>administrator</strong> therefore you can manage any dataset on this Galaxy instance. Please make sure you understand the consequences.","<% } else { %>","You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.","<% } %>","</div>",'<div class="dataset_table">',"<h2>Library-related permissions</h2>","<h4>Roles that can modify the library item</h4>",'<div id="modify_perm" class="modify_perm roles-selection"></div>','<div class="alert alert-info roles-selection">User with <strong>any</strong> of these roles can modify name, metadata, and other information about this library item.</div>',"<hr/>","<h2>Dataset-related permissions</h2>",'<div class="alert alert-warning">Changes made below will affect <strong>every</strong> library item that was created from this dataset and also every history this dataset is part of.</div>','<% if (!item.get("is_unrestricted")) { %>','<p>You can <span class="remove-restrictions"><a href="">remove all access restrictions</a></span> on this dataset.</p>',"<% } else { %>",'<p>You can <span class="make-private"><a href="">make this dataset private</a></span> to you.</p>',"<% } %>","<h4>Roles that can access the dataset</h4>",'<div id="access_perm" class="access_perm roles-selection"></div>','<div class="alert alert-info roles-selection">',"User has to have <strong>all these roles</strong> in order to access this dataset."," Users without access permission <strong>cannot</strong> have other permissions on this dataset."," If there are no access roles set on the dataset it is considered <strong>unrestricted</strong>.","</div>","<h4>Roles that can manage permissions on the dataset</h4>",'<div id="manage_perm" class="manage_perm roles-selection"></div>','<div class="alert alert-info roles-selection">',"User with <strong>any</strong> of these roles can manage permissions of this dataset. If you remove yourself you will lose the ability manage this dataset unless you are an admin.","</div>",'<button data-toggle="tooltip" data-placement="top" title="Save modifications made on this page" class="btn btn-default toolbtn_save_permissions primary-button" type="button">','<span class="fa fa-floppy-o"></span>',"&nbsp;Save","</button>","</div>","</div>"].join(""))},templateBulkImportInModal:function(){return _.template(["<div>",'<div class="library-modal-item">',"Select history: ",'<select id="dataset_import_single" name="dataset_import_single" style="width:50%; margin-bottom: 1em; " autofocus>',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>",'<div class="library-modal-item">',"or create new: ",'<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;">',"</input>","</div>","</div>"].join(""))}});t.default={LibraryDatasetView:c}});
\ No newline at end of file
+define("mvc/library/library-dataset-view",["exports","utils/localization","libs/toastr","mvc/library/library-model","utils/utils","mvc/ui/ui-select"],function(t,e,s,i,a,o){"use strict";function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var n=r(e),l=r(s),d=r(i),c=r(a),p=r(o),m=Backbone.View.extend({el:"#center",model:null,options:{},defaults:{edit_mode:!1},events:{"click .toolbtn_modify_dataset":"enableModification","click .toolbtn_cancel_modifications":"render","click .toolbtn-download-dataset":"downloadDataset","click .toolbtn-import-dataset":"importIntoHistory","click .copy-link-to-clipboard":"copyToClipboard","click .make-private":"makeDatasetPrivate","click .remove-restrictions":"removeDatasetRestrictions","click .toolbtn_save_permissions":"savePermissions","click .toolbtn_save_modifications":"saveModifications"},select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(t){this.options=_.extend(this.options,t),this.fetchExtAndGenomes(),this.options.id&&this.fetchDataset()},fetchDataset:function(t){this.options=_.extend(this.options,t),this.model=new d.default.Item({id:this.options.id});var e=this;this.model.fetch({success:function(){e.options.show_permissions?e.showPermissions():e.options.show_version?e.fetchVersion():e.render()},error:function(t,e){void 0!==e.responseJSON?l.default.error(e.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):l.default.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(t){this.options=_.extend(this.options,t),$(".tooltip").remove();var e=this.templateDataset();this.$el.html(e({item:this.model})),$(".peek").html(this.model.get("peek")),$("#center [data-toggle]").tooltip()},fetchVersion:function(t){this.options=_.extend(this.options,t);var e=this;this.options.ldda_id?(this.ldda=new d.default.Ldda({id:this.options.ldda_id}),this.ldda.url=this.ldda.urlRoot+this.model.id+"/versions/"+this.ldda.id,this.ldda.fetch({success:function(){e.renderVersion()},error:function(t,e){void 0!==e.responseJSON?l.default.error(e.responseJSON.err_msg):l.default.error("An error occurred.")}})):(this.render(),l.default.error("Library dataset version requested but no id provided."))},renderVersion:function(){$(".tooltip").remove();var t=this.templateVersion();this.$el.html(t({item:this.model,ldda:this.ldda})),$(".peek").html(this.ldda.get("peek"))},enableModification:function(){$(".tooltip").remove();var t=this.templateModifyDataset();this.$el.html(t({item:this.model})),this.renderSelectBoxes({genome_build:this.model.get("genome_build"),file_ext:this.model.get("file_ext")}),$(".peek").html(this.model.get("peek")),$("#center [data-toggle]").tooltip()},downloadDataset:function(){var t=Galaxy.root+"api/libraries/datasets/download/uncompressed",e={ld_ids:this.id};this.processDownload(t,e)},processDownload:function(t,e,s){if(t&&e){e="string"==typeof e?e:$.param(e);var i="";$.each(e.split("&"),function(){var t=this.split("=");i+='<input type="hidden" name="'+t[0]+'" value="'+t[1]+'" />'}),$('<form action="'+t+'" method="'+(s||"post")+'">'+i+"</form>").appendTo("body").submit().remove(),l.default.info("Your download will begin soon.")}},importIntoHistory:function(){this.refreshUserHistoriesList(function(t){var e=t.templateBulkImportInModal();t.modal=Galaxy.modal,t.modal.show({closing_events:!0,title:(0,n.default)("Import into History"),body:e({histories:t.histories.models}),buttons:{Import:function(){t.importCurrentIntoHistory()},Close:function(){Galaxy.modal.hide()}}})})},refreshUserHistoriesList:function(t){var e=this;this.histories=new d.default.GalaxyHistories,this.histories.fetch({success:function(s){0===s.length?l.default.warning("You have to create history first. Click this to do so.","",{onclick:function(){window.location=Galaxy.root}}):t(e)},error:function(t,e){void 0!==e.responseJSON?l.default.error(e.responseJSON.err_msg):l.default.error("An error occurred.")}})},importCurrentIntoHistory:function(){this.modal.disableButton("Import");var t=this.modal.$("input[name=history_name]").val(),e=this;if(""!==t)$.post(Galaxy.root+"api/histories",{name:t}).done(function(t){e.processImportToHistory(t.id)}).fail(function(t,e,s){l.default.error("An error occurred.")}).always(function(){e.modal.enableButton("Import")});else{var s=$(this.modal.$el).find("select[name=dataset_import_single] option:selected").val();this.processImportToHistory(s),this.modal.enableButton("Import")}},processImportToHistory:function(t){var e=new d.default.HistoryItem;e.url=e.urlRoot+t+"/contents",jQuery.getJSON(Galaxy.root+"history/set_as_current?id="+t),e.save({content:this.id,source:"library"},{success:function(){Galaxy.modal.hide(),l.default.success("Dataset imported. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}})},error:function(t,e){void 0!==e.responseJSON?l.default.error("Dataset not imported. "+e.responseJSON.err_msg):l.default.error("An error occured. Dataset not imported. Please try again.")}})},showPermissions:function(t){var e=this.templateDatasetPermissions(),s=this;this.options=_.extend(this.options,t),$(".tooltip").remove(),void 0!==this.options.fetched_permissions&&(0===this.options.fetched_permissions.access_dataset_roles.length?this.model.set({is_unrestricted:!0}):this.model.set({is_unrestricted:!1})),this.$el.html(e({item:this.model,is_admin:Galaxy.config.is_admin_user})),$.get(Galaxy.root+"api/libraries/datasets/"+s.id+"/permissions?scope=current").done(function(t){s.prepareSelectBoxes({fetched_permissions:t,is_admin:Galaxy.config.is_admin_user})}).fail(function(){l.default.error("An error occurred while attempting to fetch dataset permissions.")}),$("#center [data-toggle]").tooltip(),$("#center").css("overflow","auto")},_serializeRoles:function(t){for(var e=[],s=0;s<t.length;s++)e.push(t[s][1]+":"+t[s][0].replace(":"," ").replace(","," &"));return e},prepareSelectBoxes:function(t){this.options=_.extend(this.options,t),this.accessSelectObject=new p.default.View(this._generate_select_options({selector:"access_perm",initialData:this._serializeRoles(this.options.fetched_permissions.access_dataset_roles)})),this.modifySelectObject=new p.default.View(this._generate_select_options({selector:"modify_perm",initialData:this._serializeRoles(this.options.fetched_permissions.modify_item_roles)})),this.manageSelectObject=new p.default.View(this._generate_select_options({selector:"manage_perm",initialData:this._serializeRoles(this.options.fetched_permissions.manage_dataset_roles)}))},_generate_select_options:function(t){var e={minimumInputLength:0,multiple:!0,placeholder:"Click to select a role",formatResult:function(t){return t.name+" type: "+t.type},formatSelection:function(t){return t.name},initSelection:function(t,e){var s=[];$(t.val().split(",")).each(function(){var t=this.split(":");s.push({id:t[0],name:t[1]})}),e(s)},dropdownCssClass:"bigdrop"};return e.container=this.$el.find("#"+t.selector),e.css=t.selector,e.initialData=t.initialData.join(","),e.ajax={url:Galaxy.root+"api/libraries/datasets/"+this.id+"/permissions?scope=available",dataType:"json",quietMillis:100,data:function(t,e){return{q:t,page_limit:10,page:e}},results:function(t,e){var s=10*e<t.total;return{results:t.roles,more:s}}},e},saveModifications:function(t){var e=!1,s=this.model,i=this.$el.find(".input_dataset_name").val();if(void 0!==i&&i!==s.get("name")){if(!(i.length>0))return void l.default.warning("Library dataset name has to be at least 1 character long.");s.set("name",i),e=!0}var a=this.$el.find(".input_dataset_misc_info").val();void 0!==a&&a!==s.get("misc_info")&&(s.set("misc_info",a),e=!0);var o=this.select_genome.$el.select2("data").id;void 0!==o&&o!==s.get("genome_build")&&(s.set("genome_build",o),e=!0);var r=this.select_extension.$el.select2("data").id;void 0!==r&&r!==s.get("file_ext")&&(s.set("file_ext",r),e=!0);var n=this;e?s.save(null,{patch:!0,success:function(t){n.render(),l.default.success("Changes to library dataset saved.")},error:function(t,e){void 0!==e.responseJSON?l.default.error(e.responseJSON.err_msg):l.default.error("An error occured while attempting to update the library dataset.")}}):(n.render(),l.default.info("Nothing has changed."))},copyToClipboard:function(t){t.preventDefault();var e=Backbone.history.location.href;-1!==e.lastIndexOf("/permissions")&&(e=e.substr(0,e.lastIndexOf("/permissions"))),window.prompt("Copy to clipboard: Ctrl+C, Enter",e)},makeDatasetPrivate:function(){var t=this;$.post(Galaxy.root+"api/libraries/datasets/"+t.id+"/permissions?action=make_private").done(function(e){t.model.set({is_unrestricted:!1}),t.showPermissions({fetched_permissions:e}),l.default.success("The dataset is now private to you.")}).fail(function(){l.default.error("An error occurred while attempting to make dataset private.")})},removeDatasetRestrictions:function(){var t=this;$.post(Galaxy.root+"api/libraries/datasets/"+t.id+"/permissions?action=remove_restrictions").done(function(e){t.model.set({is_unrestricted:!0}),t.showPermissions({fetched_permissions:e}),l.default.success("Access to this dataset is now unrestricted.")}).fail(function(){l.default.error("An error occurred while attempting to make dataset unrestricted.")})},_extractIds:function(t){for(var e=[],s=t.length-1;s>=0;s--)e.push(t[s].id);return e},savePermissions:function(t){var e=this,s=this._extractIds(this.accessSelectObject.$el.select2("data")),i=this._extractIds(this.manageSelectObject.$el.select2("data")),a=this._extractIds(this.modifySelectObject.$el.select2("data"));$.post(Galaxy.root+"api/libraries/datasets/"+e.id+"/permissions?action=set_permissions",{"access_ids[]":s,"manage_ids[]":i,"modify_ids[]":a}).done(function(t){e.showPermissions({fetched_permissions:t}),l.default.success("Permissions saved.")}).fail(function(){l.default.error("An error occurred while attempting to set dataset permissions.")})},fetchExtAndGenomes:function(){var t=this;0==this.list_genomes.length&&c.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(e){for(var s in e)t.list_extensions.push({id:e[s].extension,text:e[s].extension,description:e[s].description,description_url:e[s].description_url});t.list_extensions.sort(function(t,e){return t.id>e.id?1:t.id<e.id?-1:0}),t.list_extensions.unshift(t.auto)}}),0==this.list_extensions.length&&c.default.get({url:Galaxy.root+"api/genomes",success:function(e){for(var s in e)t.list_genomes.push({id:e[s][1],text:e[s][0]});t.list_genomes.sort(function(t,e){return t.id>e.id?1:t.id<e.id?-1:0})}})},renderSelectBoxes:function(t){var e=this,s="?",i="auto";void 0!==t&&(void 0!==t.genome_build&&(s=t.genome_build),void 0!==t.file_ext&&(i=t.file_ext)),this.select_genome=new p.default.View({css:"dataset-genome-select",data:e.list_genomes,container:e.$el.find("#dataset_genome_select"),value:s}),this.select_extension=new p.default.View({css:"dataset-extension-select",data:e.list_extensions,container:e.$el.find("#dataset_extension_select"),value:i})},templateDataset:function(){return _.template(['<div class="library_style_container">','<div id="library_toolbar">','<button data-toggle="tooltip" data-placement="top" title="Download dataset" class="btn btn-default toolbtn-download-dataset primary-button toolbar-item" type="button">','<span class="fa fa-download"></span>',"&nbsp;Download","</button>",'<button data-toggle="tooltip" data-placement="top" title="Import dataset into history" class="btn btn-default toolbtn-import-dataset primary-button toolbar-item" type="button">','<span class="fa fa-book"></span>',"&nbsp;to History","</button>",'<% if (item.get("can_user_modify")) { %>','<button data-toggle="tooltip" data-placement="top" title="Modify library item" class="btn btn-default toolbtn_modify_dataset primary-button toolbar-item" type="button">','<span class="fa fa-pencil"></span>',"&nbsp;Modify","</button>","<% } %>",'<% if (item.get("can_user_manage")) { %>','<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/permissions">','<button data-toggle="tooltip" data-placement="top" title="Manage permissions" class="btn btn-default toolbtn_change_permissions primary-button toolbar-item" type="button">','<span class="fa fa-group"></span>',"&nbsp;Permissions","</button>","</a>","<% } %>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<% if (item.get("is_unrestricted")) { %>',"<div>",'This dataset is unrestricted so everybody with the link can access it. Just share <span class="copy-link-to-clipboard"><a href=""a>this page</a></span>.',"</div>","<% } %>",'<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th class="dataset-first-column" scope="row" id="id_row" data-id="<%= _.escape(item.get("ldda_id")) %>">Name</th>','<td><%= _.escape(item.get("name")) %></td>',"</tr>",'<% if (item.get("file_ext")) { %>',"<tr>",'<th scope="row">Data type</th>','<td><%= _.escape(item.get("file_ext")) %></td>',"</tr>","<% } %>",'<% if (item.get("genome_build")) { %>',"<tr>",'<th scope="row">Genome build</th>','<td><%= _.escape(item.get("genome_build")) %></td>',"</tr>","<% } %>",'<% if (item.get("file_size")) { %>',"<tr>",'<th scope="row">Size</th>','<td><%= _.escape(item.get("file_size")) %></td>',"</tr>","<% } %>",'<% if (item.get("date_uploaded")) { %>',"<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(item.get("date_uploaded")) %></td>',"</tr>","<% } %>",'<% if (item.get("uploaded_by")) { %>',"<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(item.get("uploaded_by")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_data_lines")) { %>',"<tr>",'<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(item.get("metadata_data_lines")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_comment_lines")) { %>',"<tr>",'<th scope="row">Comment Lines</th>','<td scope="row"><%= _.escape(item.get("metadata_comment_lines")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_columns")) { %>',"<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(item.get("metadata_columns")) %></td>',"</tr>","<% } %>",'<% if (item.get("metadata_column_types")) { %>',"<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(item.get("metadata_column_types")) %></td>',"</tr>","<% } %>",'<% if (item.get("message")) { %>',"<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(item.get("message")) %></td>',"</tr>","<% } %>",'<% if (item.get("misc_blurb")) { %>',"<tr>",'<th scope="row">Misc. blurb</th>','<td scope="row"><%= _.escape(item.get("misc_blurb")) %></td>',"</tr>","<% } %>",'<% if (item.get("misc_info")) { %>',"<tr>",'<th scope="row">Misc. info</th>','<td scope="row"><%= _.escape(item.get("misc_info")) %></td>',"</tr>","<% } %>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>",'<% if ( item.get("uuid") !== "ok" ) { %>',"<tr>",'<th scope="row">UUID</th>','<td scope="row"><%= _.escape(item.get("uuid")) %></td>',"</tr>","<% } %>",'<% if ( item.get("state") !== "ok" ) { %>',"<tr>",'<th scope="row">State</th>','<td scope="row"><%= _.escape(item.get("state")) %></td>',"</tr>","<% } %>","</table>",'<% if (item.get("job_stderr")) { %>',"<h4>Job Standard Error</h4>",'<pre class="code">','<%= _.escape(item.get("job_stderr")) %>',"</pre>","<% } %>",'<% if (item.get("job_stdout")) { %>',"<h4>Job Standard Output</h4>",'<pre class="code">','<%= _.escape(item.get("job_stdout")) %>',"</pre>","<% } %>","<div>",'<pre class="peek">',"</pre>","</div>",'<% if (item.get("has_versions")) { %>',"<div>","<h3>Expired versions:</h3>","<ul>",'<% _.each(item.get("expired_versions"), function(version) { %>','<li><a title="See details of this version" href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>/versions/<%- version[0] %>"><%- version[1] %></a></li>',"<% }) %>","<ul>","</div>","<% } %>","</div>","</div>"].join(""))},templateVersion:function(){return _.template(['<div class="library_style_container">','<div id="library_toolbar">','<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>">','<button data-toggle="tooltip" data-placement="top" title="Go to latest dataset" class="btn btn-default primary-button toolbar-item" type="button">','<span class="fa fa-caret-left fa-lg"></span>',"&nbsp;Latest dataset","</button>","<a>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<div class="alert alert-warning">This is an expired version of the library dataset: <%= _.escape(item.get("name")) %></div>','<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th scope="row" id="id_row" data-id="<%= _.escape(ldda.id) %>">Name</th>','<td><%= _.escape(ldda.get("name")) %></td>',"</tr>",'<% if (ldda.get("file_ext")) { %>',"<tr>",'<th scope="row">Data type</th>','<td><%= _.escape(ldda.get("file_ext")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("genome_build")) { %>',"<tr>",'<th scope="row">Genome build</th>','<td><%= _.escape(ldda.get("genome_build")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("file_size")) { %>',"<tr>",'<th scope="row">Size</th>','<td><%= _.escape(ldda.get("file_size")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("date_uploaded")) { %>',"<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(ldda.get("date_uploaded")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("uploaded_by")) { %>',"<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(ldda.get("uploaded_by")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_data_lines")) { %>',"<tr>",'<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(ldda.get("metadata_data_lines")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_comment_lines")) { %>',"<tr>",'<th scope="row">Comment Lines</th>','<td scope="row"><%= _.escape(ldda.get("metadata_comment_lines")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_columns")) { %>',"<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(ldda.get("metadata_columns")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("metadata_column_types")) { %>',"<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(ldda.get("metadata_column_types")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("message")) { %>',"<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(ldda.get("message")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("misc_blurb")) { %>',"<tr>",'<th scope="row">Miscellaneous blurb</th>','<td scope="row"><%= _.escape(ldda.get("misc_blurb")) %></td>',"</tr>","<% } %>",'<% if (ldda.get("misc_info")) { %>',"<tr>",'<th scope="row">Miscellaneous information</th>','<td scope="row"><%= _.escape(ldda.get("misc_info")) %></td>',"</tr>","<% } %>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>","</table>","<div>",'<pre class="peek">',"</pre>","</div>","</div>","</div>"].join(""))},templateModifyDataset:function(){return _.template(['<div class="library_style_container">','<div id="library_toolbar">','<button data-toggle="tooltip" data-placement="top" title="Cancel modifications" class="btn btn-default toolbtn_cancel_modifications primary-button toolbar-item" type="button">','<span class="fa fa-times"></span>',"&nbsp;Cancel","</button>",'<button data-toggle="tooltip" data-placement="top" title="Save modifications" class="btn btn-default toolbtn_save_modifications primary-button toolbar-item" type="button">','<span class="fa fa-floppy-o"></span>',"&nbsp;Save","</button>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<div class="dataset_table">','<table class="grid table table-striped table-condensed">',"<tr>",'<th class="dataset-first-column" scope="row" id="id_row" data-id="<%= _.escape(item.get("ldda_id")) %>">Name</th>','<td><input class="input_dataset_name form-control" type="text" placeholder="name" value="<%= _.escape(item.get("name")) %>"></td>',"</tr>","<tr>",'<th scope="row">Data type</th>',"<td>",'<span id="dataset_extension_select" class="dataset-extension-select" />',"</td>","</tr>","<tr>",'<th scope="row">Genome build</th>',"<td>",'<span id="dataset_genome_select" class="dataset-genome-select" />',"</td>","</tr>","<tr>",'<th scope="row">Size</th>','<td><%= _.escape(item.get("file_size")) %></td>',"</tr>","<tr>",'<th scope="row">Date uploaded (UTC)</th>','<td><%= _.escape(item.get("date_uploaded")) %></td>',"</tr>","<tr>",'<th scope="row">Uploaded by</th>','<td><%= _.escape(item.get("uploaded_by")) %></td>',"</tr>",'<tr scope="row">','<th scope="row">Data Lines</th>','<td scope="row"><%= _.escape(item.get("metadata_data_lines")) %></td>',"</tr>",'<th scope="row">Comment Lines</th>','<% if (item.get("metadata_comment_lines") === "") { %>','<td scope="row"><%= _.escape(item.get("metadata_comment_lines")) %></td>',"<% } else { %>",'<td scope="row">unknown</td>',"<% } %>","</tr>","<tr>",'<th scope="row">Number of Columns</th>','<td scope="row"><%= _.escape(item.get("metadata_columns")) %></td>',"</tr>","<tr>",'<th scope="row">Column Types</th>','<td scope="row"><%= _.escape(item.get("metadata_column_types")) %></td>',"</tr>","<tr>",'<th scope="row">Message</th>','<td scope="row"><%= _.escape(item.get("message")) %></td>',"</tr>","<tr>",'<th scope="row">Misc. blurb</th>','<td scope="row"><%= _.escape(item.get("misc_blurb")) %></td>',"</tr>","<tr>",'<th scope="row">Misc. information</th>','<td><input class="input_dataset_misc_info form-control" type="text" placeholder="info" value="<%= _.escape(item.get("misc_info")) %>"></td>',"</tr>",'<% if (item.get("tags")) { %>',"<tr>",'<th scope="row">Tags</th>','<td scope="row"><%= _.escape(item.get("tags")) %></td>',"</tr>","<% } %>","</table>","<div>",'<pre class="peek">',"</pre>","</div>","</div>","</div>"].join(""))},templateDatasetPermissions:function(){return _.template(['<div class="library_style_container">','<div id="library_toolbar">','<a href="#folders/<%- item.get("folder_id") %>/datasets/<%- item.id %>">','<button data-toggle="tooltip" data-placement="top" title="Go back to dataset" class="btn btn-default primary-button toolbar-item" type="button">','<span class="fa fa-file-o"></span>',"&nbsp;Dataset Details","</button>","<a>","</div>",'<ol class="breadcrumb">','<li><a title="Return to the list of libraries" href="#">Libraries</a></li>','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'<li><a title="Return to this folder" href="#/folders/<%- path_item[0] %>"><%- path_item[1] %></a> </li> ',"<% } else { %>",'<li class="active"><span title="You are here"><%- path_item[1] %></span></li>',"<% } %>","<% }); %>","</ol>",'<h1>Dataset: <%= _.escape(item.get("name")) %></h1>','<div class="alert alert-warning">',"<% if (is_admin) { %>","You are logged in as an <strong>administrator</strong> therefore you can manage any dataset on this Galaxy instance. Please make sure you understand the consequences.","<% } else { %>","You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.","<% } %>","</div>",'<div class="dataset_table">',"<h2>Library-related permissions</h2>","<h4>Roles that can modify the library item</h4>",'<div id="modify_perm" class="modify_perm roles-selection"></div>','<div class="alert alert-info roles-selection">User with <strong>any</strong> of these roles can modify name, metadata, and other information about this library item.</div>',"<hr/>","<h2>Dataset-related permissions</h2>",'<div class="alert alert-warning">Changes made below will affect <strong>every</strong> library item that was created from this dataset and also every history this dataset is part of.</div>','<% if (!item.get("is_unrestricted")) { %>','<p>You can <span class="remove-restrictions"><a href="">remove all access restrictions</a></span> on this dataset.</p>',"<% } else { %>",'<p>You can <span class="make-private"><a href="">make this dataset private</a></span> to you.</p>',"<% } %>","<h4>Roles that can access the dataset</h4>",'<div id="access_perm" class="access_perm roles-selection"></div>','<div class="alert alert-info roles-selection">',"User has to have <strong>all these roles</strong> in order to access this dataset."," Users without access permission <strong>cannot</strong> have other permissions on this dataset."," If there are no access roles set on the dataset it is considered <strong>unrestricted</strong>.","</div>","<h4>Roles that can manage permissions on the dataset</h4>",'<div id="manage_perm" class="manage_perm roles-selection"></div>','<div class="alert alert-info roles-selection">',"User with <strong>any</strong> of these roles can manage permissions of this dataset. If you remove yourself you will lose the ability manage this dataset unless you are an admin.","</div>",'<button data-toggle="tooltip" data-placement="top" title="Save modifications made on this page" class="btn btn-default toolbtn_save_permissions primary-button" type="button">','<span class="fa fa-floppy-o"></span>',"&nbsp;Save","</button>","</div>","</div>"].join(""))},templateBulkImportInModal:function(){return _.template(["<div>",'<div class="library-modal-item">',"Select history: ",'<select id="dataset_import_single" name="dataset_import_single" style="width:50%; margin-bottom: 1em; " autofocus>',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>",'<div class="library-modal-item">',"or create new: ",'<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;">',"</input>","</div>","</div>"].join(""))}});t.default={LibraryDatasetView:m}});
\ No newline at end of file
diff --git a/static/scripts/mvc/library/library-foldertoolbar-view.js b/static/scripts/mvc/library/library-foldertoolbar-view.js
index 3776c79fd30..4d56ab0eb19 100644
--- a/static/scripts/mvc/library/library-foldertoolbar-view.js
+++ b/static/scripts/mvc/library/library-foldertoolbar-view.js
@@ -1 +1 @@
-define("mvc/library/library-foldertoolbar-view",["exports","utils/utils","libs/toastr","mvc/library/library-model","mvc/ui/ui-select","libs/jquery/jstree"],function(e,t,i,a,o){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var l=s(t),r=s(i),n=s(a),d=s(o),c=Backbone.View.extend({el:"#center",events:{"click #toolbtn_create_folder":"createFolderFromModal","click #toolbtn_bulk_import":"modalBulkImport","click #include_deleted_datasets_chk":"checkIncludeDeleted","click #toolbtn_bulk_delete":"deleteSelectedItems","click .toolbtn-show-locinfo":"showLocInfo","click .page_size_prompt":"showPageSizePrompt"},defaults:{can_add_library_item:!1,contains_file_or_folder:!1,chain_call_control:{total_number:0,failed_number:0},disabled_jstree_element:"folders"},modal:null,jstree:null,histories:null,select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=_.defaults(e||{},this.defaults),this.fetchExtAndGenomes(),this.render()},render:function(e){this.options=_.extend(this.options,e);var t=this.templateToolBar(),i={id:this.options.id,is_admin:!1,is_anonym:!0,mutiple_add_dataset_options:!1};Galaxy.user&&(i.is_admin=Galaxy.user.isAdmin(),i.is_anonym=Galaxy.user.isAnonymous(),null===Galaxy.config.user_library_import_dir&&!1===Galaxy.config.allow_library_path_paste&&null===Galaxy.config.library_import_dir||(i.mutiple_add_dataset_options=!0)),this.$el.html(t(i))},renderPaginator:function(e){this.options=_.extend(this.options,e);var t=this.templatePaginator();$("body").find(".folder-paginator").html(t({id:this.options.id,show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_items_count:this.options.total_items_count,items_shown:this.options.items_shown,folder_page_size:Galaxy.libraries.preferences.get("folder_page_size")}))},configureElements:function(e){this.options=_.extend(this.options,e),!0===this.options.can_add_library_item?$(".add-library-items").show():$(".add-library-items").hide(),!0===this.options.contains_file_or_folder&&Galaxy.user?Galaxy.user.isAnonymous()?($(".dataset-manipulation").show(),$(".logged-dataset-manipulation").hide()):($(".logged-dataset-manipulation").show(),$(".dataset-manipulation").show()):($(".logged-dataset-manipulation").hide(),$(".dataset-manipulation").hide()),this.$el.find("[data-toggle]").tooltip()},createFolderFromModal:function(e){e.preventDefault(),e.stopPropagation();var t=this,i=this.templateNewFolderInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Create New Folder",body:i(),buttons:{Create:function(){t.create_new_folder_event()},Close:function(){Galaxy.modal.hide()}}})},create_new_folder_event:function(){var e=this.serialize_new_folder();if(this.validate_new_folder(e)){var t,i=new n.default.FolderAsModel,a=Backbone.history.fragment.split("/");t=a.indexOf("page")>-1?a[a.length-3]:a[a.length-1],i.url=i.urlRoot+t,i.save(e,{success:function(e){Galaxy.modal.hide(),r.default.success("Folder created."),e.set({type:"folder"}),Galaxy.libraries.folderListView.collection.add(e)},error:function(e,t){Galaxy.modal.hide(),void 0!==t.responseJSON?r.default.error(t.responseJSON.err_msg):r.default.error("An error occurred.")}})}else r.default.error("Folder's name is missing.");return!1},serialize_new_folder:function(){return{name:$("input[name='Name']").val(),description:$("input[name='Description']").val()}},validate_new_folder:function(e){return""!==e.name},modalBulkImport:function(){if(0===this.findCheckedRows().length)r.default.info("You must select some datasets first.");else{var e=this;this.histories=new n.default.GalaxyHistories,this.histories.fetch().done(function(){var t=e.templateBulkImportInModal();e.modal=Galaxy.modal,e.modal.show({closing_events:!0,title:"Import into History",body:t({histories:e.histories.models}),buttons:{Import:function(){e.importAllIntoHistory()},Close:function(){Galaxy.modal.hide()}}})}).fail(function(e,t){void 0!==t.responseJSON?r.default.error(t.responseJSON.err_msg):r.default.error("An error occurred.")})}},importAllIntoHistory:function(){this.modal.disableButton("Import");var e=this.modal.$("input[name=history_name]").val(),t=this;if(""!==e)$.post(Galaxy.root+"api/histories",{name:e}).done(function(e){t.options.last_used_history_id=e.id,t.processImportToHistory(e.id,e.name)}).fail(function(e,t,i){r.default.error("An error occurred.")}).always(function(){t.modal.enableButton("Import")});else{var i=$("select[name=dataset_import_bulk] option:selected").val();this.options.last_used_history_id=i;var a=$("select[name=dataset_import_bulk] option:selected").text();this.processImportToHistory(i,a),this.modal.enableButton("Import")}},processImportToHistory:function(e,t){var i=[],a=[];this.findCheckedRows().each(function(){var e=$(this).closest("tr").data("id");"F"==e.substring(0,1)?a.push(e):i.push(e)});for(var o=[],s=i.length-1;s>=0;s--){var l=i[s];(d=new n.default.HistoryItem).url=d.urlRoot+e+"/contents",d.content=l,d.source="library",o.push(d)}for(s=a.length-1;s>=0;s--){var r=a[s],d=new n.default.HistoryItem;d.url=d.urlRoot+e+"/contents",d.content=r,d.source="library_folder",o.push(d)}this.initChainCallControl({length:o.length,action:"to_history",history_name:t}),jQuery.getJSON(Galaxy.root+"history/set_as_current?id="+e),this.chainCallImportingIntoHistory(o,t)},updateProgress:function(){this.progress+=this.progressStep,$(".progress-bar-import").width(Math.round(this.progress)+"%");var e=Math.round(this.progress)+"% Complete";$(".completion_span").text(e)},download:function(e,t){var i=[],a=[];this.findCheckedRows().each(function(){var e=$(this).closest("tr").data("id");"F"==e.substring(0,1)?a.push(e):i.push(e)});var o=Galaxy.root+"api/libraries/datasets/download/"+t,s={ld_ids:i,folder_ids:a};this.processDownload(o,s,"get")},processDownload:function(e,t,i){if(e&&t){t="string"==typeof t?t:$.param(t);var a="";$.each(t.split("&"),function(){var e=this.split("=");a+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),$('<form action="'+e+'" method="'+(i||"post")+'">'+a+"</form>").appendTo("body").submit().remove(),r.default.info("Your download will begin soon.")}else r.default.error("An error occurred.")},addFilesFromHistoryModal:function(){this.histories=new n.default.GalaxyHistories;var e=this;this.histories.fetch().done(function(){e.modal=Galaxy.modal;var t=e.templateAddFilesFromHistory();e.modal.show({closing_events:!0,title:"Adding datasets from your history",body:t({histories:e.histories.models}),buttons:{Add:function(){e.addAllDatasetsFromHistory()},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),e.fetchAndDisplayHistoryContents(e.histories.models[0].id),$("#dataset_add_bulk").change(function(t){e.fetchAndDisplayHistoryContents(t.target.value)})}).fail(function(e,t){void 0!==t.responseJSON?r.default.error(t.responseJSON.err_msg):r.default.error("An error occurred.")})},importFilesFromPathModal:function(){var e=this;this.modal=Galaxy.modal;var t=this.templateImportPathModal();this.modal.show({closing_events:!0,title:"Please enter paths to import",body:t({}),buttons:{Import:function(){e.importFromPathsClicked(e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),this.renderSelectBoxes()},fetchExtAndGenomes:function(){var e=this;l.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){e.list_extensions=[];for(var i in t)e.list_extensions.push({id:t[i].extension,text:t[i].extension,description:t[i].description,description_url:t[i].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)},cache:!0}),l.default.get({url:Galaxy.root+"api/genomes",success:function(t){e.list_genomes=[];for(var i in t)e.list_genomes.push({id:t[i][1],text:t[i][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})},cache:!0})},renderSelectBoxes:function(){var e=this;this.select_genome=new d.default.View({css:"library-genome-select",data:e.list_genomes,container:Galaxy.modal.$el.find("#library_genome_select"),value:"?"}),this.select_extension=new d.default.View({css:"library-extension-select",data:e.list_extensions,container:Galaxy.modal.$el.find("#library_extension_select"),value:"auto"})},importFilesFromGalaxyFolderModal:function(e){var t=this,i=this.templateBrowserModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Please select folders or files",body:i({}),buttons:{Import:function(){t.importFromJstreePath(t,e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+t.id,{trigger:!0})}}),$(".libimport-select-all").bind("click",function(){$("#jstree_browser").jstree("check_all")}),$(".libimport-select-none").bind("click",function(){$("#jstree_browser").jstree("uncheck_all")}),this.renderSelectBoxes(),e.disabled_jstree_element="folders",this.renderJstree(e),$("input[type=radio]").change(function(i){"jstree-disable-folders"===i.target.value?(e.disabled_jstree_element="folders",t.renderJstree(e),$(".jstree-folders-message").hide(),$(".jstree-preserve-structure").hide(),$(".jstree-files-message").show()):"jstree-disable-files"===i.target.value&&($(".jstree-files-message").hide(),$(".jstree-folders-message").show(),$(".jstree-preserve-structure").show(),e.disabled_jstree_element="files",t.renderJstree(e))})},renderJstree:function(e){this.options=_.extend(this.options,e);var t=e.source||"userdir",i=this.options.disabled_jstree_element;this.jstree=new n.default.Jstree,this.jstree.url=this.jstree.urlRoot+"?target="+t+"&format=jstree&disable="+i,this.jstree.fetch({success:function(e,t){$("#jstree_browser").jstree("destroy"),$("#jstree_browser").jstree({core:{data:e},plugins:["types","checkbox"],types:{folder:{icon:"jstree-folder"},file:{icon:"jstree-file"}},checkbox:{three_state:!1}})},error:function(e,t){void 0!==t.responseJSON?404001===t.responseJSON.err_code?r.default.warning(t.responseJSON.err_msg):r.default.error(t.responseJSON.err_msg):r.default.error("An error occurred.")}})},importFromPathsClicked:function(){var e=this.modal.$el.find(".preserve-checkbox").is(":checked"),t=this.modal.$el.find(".link-checkbox").is(":checked"),i=this.modal.$el.find(".spacetab-checkbox").is(":checked"),a=this.modal.$el.find(".posix-checkbox").is(":checked"),o=this.modal.$el.find(".tag-files").is(":checked"),s=this.select_extension.value(),l=this.select_genome.value(),n=$("textarea#import_paths").val(),d=[];if(n){this.modal.disableButton("Import");for(var c=(n=n.split("\n")).length-1;c>=0;c--){var p=n[c].trim();0!==p.length&&d.push(p)}this.initChainCallControl({length:d.length,action:"adding_datasets"}),this.chainCallImportingFolders({paths:d,preserve_dirs:e,link_data:t,space_to_tab:i,to_posix_lines:a,source:"admin_path",file_type:s,tag_using_filenames:o,dbkey:l})}else r.default.info("Please enter a path relative to Galaxy root.")},initChainCallControl:function(e){var t;switch(e.action){case"adding_datasets":t=this.templateAddingDatasetsProgressBar(),this.modal.$el.find(".modal-body").html(t({folder_name:this.options.folder_name}));break;case"deleting_datasets":t=this.templateDeletingItemsProgressBar(),this.modal.$el.find(".modal-body").html(t());break;case"to_history":t=this.templateImportIntoHistoryProgressBar(),this.modal.$el.find(".modal-body").html(t({history_name:e.history_name}));break;default:Galaxy.emit.error("Wrong action specified.","datalibs")}this.progress=0,this.progressStep=100/e.length,this.options.chain_call_control.total_number=e.length,this.options.chain_call_control.failed_number=0},importFromJstreePath:function(e,t){var i=$("#jstree_browser").jstree().get_selected(!0),a=_.filter(i,function(e){return 0==e.state.disabled}),o=this.modal.$el.find(".preserve-checkbox").is(":checked"),s=this.modal.$el.find(".link-checkbox").is(":checked"),l=this.modal.$el.find(".spacetab-checkbox").is(":checked"),n=this.modal.$el.find(".posix-checkbox").is(":checked"),d=this.select_extension.value(),c=this.select_genome.value(),p=this.modal.$el.find(".tag-files").is(":checked"),h=a[0].type,u=[];if(a.length<1)r.default.info("Please select some items first.");else{this.modal.disableButton("Import");for(var m=a.length-1;m>=0;m--)void 0!==a[m].li_attr.full_path&&u.push(a[m].li_attr.full_path);if(this.initChainCallControl({length:u.length,action:"adding_datasets"}),"folder"===h){f=t.source+"_folder";this.chainCallImportingFolders({paths:u,preserve_dirs:o,link_data:s,space_to_tab:l,to_posix_lines:n,source:f,file_type:d,dbkey:c,tag_using_filenames:p})}else if("file"===h){var f=t.source+"_file";this.chainCallImportingUserdirFiles({paths:u,file_type:d,dbkey:c,link_data:s,space_to_tab:l,to_posix_lines:n,source:f,tag_using_filenames:p})}}},fetchAndDisplayHistoryContents:function(e){var t=this;new n.default.HistoryContents({id:e}).fetch({success:function(i){var a=t.templateHistoryContents();t.histories.get(e).set({contents:i}),t.modal.$el.find("#selected_history_content").html(a({history_contents:i.models.reverse()})),t.modal.$el.find(".history-import-select-all").bind("click",function(){$("#selected_history_content [type=checkbox]").prop("checked",!0)}),t.modal.$el.find(".history-import-unselect-all").bind("click",function(){$("#selected_history_content [type=checkbox]").prop("checked",!1)})},error:function(e,t){void 0!==t.responseJSON?r.default.error(t.responseJSON.err_msg):r.default.error("An error occurred.")}})},addAllDatasetsFromHistory:function(){var e=this.modal.$el.find("#selected_history_content").find(":checked"),t=[],i=[],a=[];if(e.length<1)r.default.info("You must select some datasets first.");else{this.modal.disableButton("Add"),e.each(function(){var e=$(this).closest("li").data("id");if(e){var a=$(this).closest("li").data("name");t.push(e),i.push(a)}});for(var o=t.length-1;o>=0;o--){var s=t[o],l=new n.default.Item;l.url=Galaxy.root+"api/folders/"+this.options.id+"/contents","collection"===i[o]?l.set({from_hdca_id:s}):l.set({from_hda_id:s}),a.push(l)}this.initChainCallControl({length:a.length,action:"adding_datasets"}),this.chainCallAddingHdas(a)}},chainCallImportingIntoHistory:function(e,t){var i=this,a=e.pop();if(void 0===a)return 0===this.options.chain_call_control.failed_number?r.default.success("Selected datasets imported into history. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}}):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?r.default.error("There was an error and no datasets were imported into history."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&r.default.warning("Some of the datasets could not be imported into history. Click this to see what was imported.","",{onclick:function(){window.location=Galaxy.root}}),Galaxy.modal.hide(),!0;$.when(a.save({content:a.content,source:a.source})).done(function(){i.updateProgress(),i.chainCallImportingIntoHistory(e,t)}).fail(function(){i.options.chain_call_control.failed_number+=1,i.updateProgress(),i.chainCallImportingIntoHistory(e,t)})},chainCallImportingUserdirFiles:function(e){var t=this,i=e.paths.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?(r.default.success("Selected files imported into the current folder"),Galaxy.modal.hide()):r.default.error("An error occured."),!0;$.when($.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+i+"&file_type="+e.file_type+"&link_data="+e.link_data+"&space_to_tab="+e.space_to_tab+"&to_posix_lines="+e.to_posix_lines+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(i){t.updateProgress(),t.chainCallImportingUserdirFiles(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingUserdirFiles(e)})},chainCallImportingFolders:function(e){var t=this,i=e.paths.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?(r.default.success("Selected folders and their contents imported into the current folder."),Galaxy.modal.hide()):r.default.error("An error occured."),!0;$.when($.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+i+"&preserve_dirs="+e.preserve_dirs+"&link_data="+e.link_data+"&to_posix_lines="+e.to_posix_lines+"&space_to_tab="+e.space_to_tab+"&file_type="+e.file_type+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(i){t.updateProgress(),t.chainCallImportingFolders(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingFolders(e)})},chainCallAddingHdas:function(e){var t=this;this.added_hdas=new n.default.Folder;var i=e.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?r.default.success("Selected datasets from history added to the folder"):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?r.default.error("There was an error and no datasets were added to the folder."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&r.default.warning("Some of the datasets could not be added to the folder"),Galaxy.modal.hide(),this.added_hdas;$.when(i.save({from_hda_id:i.get("from_hda_id")})).done(function(i){Galaxy.libraries.folderListView.collection.add(i),t.updateProgress(),t.chainCallAddingHdas(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallAddingHdas(e)})},chainCallDeletingItems:function(e){var t=this;this.deleted_items=new n.default.Folder;var i=e.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?r.default.success("Selected items were deleted."):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?r.default.error("There was an error and no items were deleted. Please make sure you have sufficient permissions."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&r.default.warning("Some of the items could not be deleted. Please make sure you have sufficient permissions."),Galaxy.modal.hide(),this.deleted_items;i.destroy().done(function(a){if(Galaxy.libraries.folderListView.collection.remove(i.id),t.updateProgress(),Galaxy.libraries.folderListView.options.include_deleted){var o=null;"folder"===a.type||"LibraryFolder"===a.model_class?o=new n.default.FolderAsModel(a):"file"===a.type||"LibraryDataset"===a.model_class?o=new n.default.Item(a):(Galaxy.emit.error("Unknown library item type found.","datalibs"),Galaxy.emit.error(a.type||a.model_class,"datalibs")),Galaxy.libraries.folderListView.collection.add(o)}t.chainCallDeletingItems(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallDeletingItems(e)})},checkIncludeDeleted:function(e){e.target.checked?Galaxy.libraries.folderListView.fetchFolder({include_deleted:!0}):Galaxy.libraries.folderListView.fetchFolder({include_deleted:!1})},deleteSelectedItems:function(){var e=[],t=[],i=this.findCheckedRows();if(0===i.length)r.default.info("You must select at least one item for deletion.");else{var a=this.templateDeletingItemsProgressBar();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Deleting selected items",body:a({}),buttons:{Close:function(){Galaxy.modal.hide()}}}),this.options.chain_call_control.total_number=0,this.options.chain_call_control.failed_number=0,i.each(function(){var i=$(this).closest("tr").data("id");void 0!==i&&("F"==i.substring(0,1)?t.push(i):e.push(i))});var o=e.length+t.length;this.progressStep=100/o,this.progress=0;for(var s=[],l=e.length-1;l>=0;l--){var d=new n.default.Item({id:e[l]});s.push(d)}for(l=t.length-1;l>=0;l--){var c=new n.default.FolderAsModel({id:t[l]});s.push(c)}this.options.chain_call_control.total_number=o,this.chainCallDeletingItems(s)}},showLocInfo:function(){var e=null,t=this;null!==Galaxy.libraries.libraryListView?(e=Galaxy.libraries.libraryListView.collection.get(this.options.parent_library_id),this.showLocInfoModal(e)):(e=new n.default.Library({id:this.options.parent_library_id})).fetch({success:function(){t.showLocInfoModal(e)},error:function(e,t){void 0!==t.responseJSON?r.default.error(t.responseJSON.err_msg):r.default.error("An error occurred.")}})},showLocInfoModal:function(e){var t=this,i=this.templateLocInfoInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Location Details",body:i({library:e,options:t.options}),buttons:{Close:function(){Galaxy.modal.hide()}}})},showImportModal:function(e){switch(e.source){case"history":this.addFilesFromHistoryModal();break;case"importdir":this.importFilesFromGalaxyFolderModal({source:"importdir"});break;case"path":this.importFilesFromPathModal();break;case"userdir":this.importFilesFromGalaxyFolderModal({source:"userdir"});break;default:Galaxy.libraries.library_router.back(),r.default.error("Invalid import source.")}},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many items per page do you want to see?",Galaxy.libraries.preferences.get("folder_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({folder_page_size:parseInt(t)}),Galaxy.libraries.folderListView.render({id:this.options.id,show_page:1}))},findCheckedRows:function(){return $("#folder_list_body").find(":checked")},templateToolBar:function(){return _.template(['<div class="library_style_container">','<div id="library_toolbar">','<form class="form-inline" role="form">',"<span><strong>DATA LIBRARIES</strong></span>",'<span class="library-paginator folder-paginator"></span>','<div class="checkbox toolbar-item logged-dataset-manipulation" style="height: 20px; display:none;">',"<label>",'<input id="include_deleted_datasets_chk" type="checkbox">include deleted</input>',"</label>","</div>",'<button style="display:none;" data-toggle="tooltip" data-placement="top" title="Create New Folder" id="toolbtn_create_folder" class="btn btn-default primary-button add-library-items toolbar-item" type="button">','<span class="fa fa-plus"></span><span class="fa fa-folder"></span>',"</button>","<% if(mutiple_add_dataset_options) { %>",'<div class="btn-group add-library-items" style="display:none;">','<button title="Add Datasets to Current Folder" id="" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">','<span class="fa fa-plus"></span><span class="fa fa-file"></span><span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#folders/<%= id %>/import/history"> from History</a></li>',"<% if(Galaxy.config.user_library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/userdir"> from User Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li class="divider"></li>','<li class="dropdown-header">Admins only</li>',"<% if(Galaxy.config.library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/importdir">from Import Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li><a href="#folders/<%= id %>/import/path">from Path</a></li>',"<% } %>","<% } %>","</ul>","</div>","<% } else { %>",'<a  data-placement="top" title="Add Datasets to Current Folder" style="display:none;" class="btn btn-default add-library-items" href="#folders/<%= id %>/import/history" role="button">','<span class="fa fa-plus"></span><span class="fa fa-file"></span>',"</a>","<% } %>",'<button data-toggle="tooltip" data-placement="top" title="Import selected datasets into history" id="toolbtn_bulk_import" class="primary-button dataset-manipulation" style="margin-left: 0.5em; display:none;" type="button">','<span class="fa fa-book"></span>',"&nbsp;to History","</button>",'<div class="btn-group dataset-manipulation" style="margin-left: 0.5em; display:none; ">','<button title="Download selected items as archive" type="button" class="primary-button dropdown-toggle" data-toggle="dropdown">','<span class="fa fa-download"></span> Download <span class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#/folders/<%= id %>/download/tgz">.tar.gz</a></li>','<li><a href="#/folders/<%= id %>/download/tbz">.tar.bz</a></li>','<li><a href="#/folders/<%= id %>/download/zip">.zip</a></li>',"</ul>","</div>",'<button data-toggle="tooltip" data-placement="top" title="Mark selected items deleted" id="toolbtn_bulk_delete" class="primary-button logged-dataset-manipulation" style="margin-left: 0.5em; display:none; " type="button">','<span class="fa fa-times"></span> Delete</button>','<button data-id="<%- id %>" data-toggle="tooltip" data-placement="top" title="Show location details" class="primary-button toolbtn-show-locinfo" style="margin-left: 0.5em;" type="button">','<span class="fa fa-info-circle"></span>',"&nbsp;Details","</button>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/folder-contents/" target="_blank">','<button class="primary-button" type="button">','<span class="fa fa-question-circle"></span>',"&nbsp;Help","</button>","</a>","</span>","</div>","</form>",'<div id="folder_items_element">',"</div>",'<div class="folder-paginator paginator-bottom"></div>',"</div>"].join(""))},templateLocInfoInModal:function(){return _.template(["<div>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">library</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>",'<td><%- library.get("name") %></td>',"</tr>",'<% if(library.get("description") !== "") { %>',"<tr>","<td>description</td>",'<td><%- library.get("description") %></td>',"</tr>","<% } %>",'<% if(library.get("synopsis") !== "") { %>',"<tr>","<td>synopsis</td>",'<td><%- library.get("synopsis") %></td>',"</tr>","<% } %>",'<% if(library.get("create_time_pretty") !== "") { %>',"<tr>","<td>created</td>",'<td><span title="<%- library.get("create_time") %>"><%- library.get("create_time_pretty") %></span></td>',"</tr>","<% } %>","<tr>","<td>id</td>",'<td><%- library.get("id") %></td>',"</tr>","</tbody>","</table>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">folder</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>","<td><%- options.folder_name %></td>","</tr>",'<% if(options.folder_description !== "") { %>',"<tr>","<td>description</td>","<td><%- options.folder_description %></td>","</tr>","<% } %>","<tr>","<td>id</td>","<td><%- options.id %></td>","</tr>","</tbody>","</table>","</div>"].join(""))},templateNewFolderInModal:function(){return _.template(['<div id="new_folder_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">',"</form>","</div>"].join(""))},templateBulkImportInModal:function(){return _.template(["<div>",'<div class="library-modal-item">',"Select history: ",'<select id="dataset_import_bulk" name="dataset_import_bulk" style="width:50%; margin-bottom: 1em; " autofocus>',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>",'<div class="library-modal-item">',"or create new: ",'<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;">',"</input>","</div>","</div>"].join(""))},templateImportIntoHistoryProgressBar:function(){return _.template(['<div class="import_text">',"Importing selected items to history <b><%= _.escape(history_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateAddingDatasetsProgressBar:function(){return _.template(['<div class="import_text">',"Adding selected datasets to library folder <b><%= _.escape(folder_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateDeletingItemsProgressBar:function(){return _.template(['<div class="import_text">',"</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateBrowserModal:function(){return _.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-files-message">All files you select will be imported into the current folder ignoring their folder structure.</div>','<div class="alert alert-info jstree-folders-message" style="display:none;">All files within the selected folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom:1em;">','<label title="Switch to selecting files" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-folders" checked="checked"> Choose Files',"</label>",'<label title="Switch to selecting folders" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-files"> Choose Folders',"</label>","</div>",'<div style="margin-bottom:1em;">','<label class="checkbox-inline jstree-preserve-structure" style="display:none;">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<button title="Select all files" type="button" class="button primary-button libimport-select-all">',"Select all","</button>",'<button title="Select no files" type="button" class="button primary-button libimport-select-none">',"Unselect all","</button>","<hr />",'<div id="jstree_browser">',"</div>","<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<br>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateImportPathModal:function(){return _.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-folders-message">All files within the given folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom: 0.5em;">','<label class="checkbox-inline">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>","<br>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<textarea id="import_paths" class="form-control" rows="5" placeholder="Absolute paths (or paths relative to Galaxy root) separated by newline" autofocus></textarea>',"<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateAddFilesFromHistory:function(){return _.template(['<div id="add_files_modal">',"<div>","1.&nbsp;Select history:&nbsp;",'<select id="dataset_add_bulk" name="dataset_add_bulk" style="width:66%; "> ',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>","<br/>",'<div id="selected_history_content">',"</div>","</div>"].join(""))},templateHistoryContents:function(){return _.template(["<p>2.&nbsp;Choose the datasets to import:</p>","<div>",'<button title="Select all datasets" type="button" class="button primary-button history-import-select-all">',"Select all","</button>",'<button title="Select all datasets" type="button" class="button primary-button history-import-unselect-all">',"Unselect all","</button>","</div>","<br>","<ul>","<% _.each(history_contents, function(history_item) { %>",'<% if (history_item.get("deleted") != true ) { %>','<% var item_name = history_item.get("name") %>','<% if (history_item.get("type") === "collection") { %>','<% var collection_type = history_item.get("collection_type") %>','<% if (collection_type === "list") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">',"<label>",'<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection)',"</label>","</li>","<% } else { %>",'<li><input style="margin: 0;" type="checkbox" onclick="return false;" disabled="disabled">','<span title="You can convert this collection into a collection of type list using the Collection Tools">','<%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection of type <%= _.escape(collection_type) %> not supported.)',"</span>","</li>","<% } %>",'<% } else if (history_item.get("visible") === true && history_item.get("state") === "ok") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">','<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %>',"</label>","</li>","<% } %>","<% } %>","<% }); %>","</ul>"].join(""))},templatePaginator:function(){return _.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#folders/<%= id %>/page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#folders/<%= id %>/page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- items_shown %> items shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- folder_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_items_count %> total","</span>"].join(""))}});e.default={FolderToolbarView:c}});
\ No newline at end of file
+define("mvc/library/library-foldertoolbar-view",["exports","utils/localization","utils/utils","libs/toastr","mvc/library/library-model","mvc/ui/ui-select","libs/jquery/jstree"],function(e,t,i,a,o,s){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var r=l(t),n=l(i),d=l(a),c=l(o),p=l(s),h=Backbone.View.extend({el:"#center",events:{"click #toolbtn_create_folder":"createFolderFromModal","click #toolbtn_bulk_import":"modalBulkImport","click #include_deleted_datasets_chk":"checkIncludeDeleted","click #toolbtn_bulk_delete":"deleteSelectedItems","click .toolbtn-show-locinfo":"showLocInfo","click .page_size_prompt":"showPageSizePrompt"},defaults:{can_add_library_item:!1,contains_file_or_folder:!1,chain_call_control:{total_number:0,failed_number:0},disabled_jstree_element:"folders"},modal:null,jstree:null,histories:null,select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(e){this.options=_.defaults(e||{},this.defaults),this.fetchExtAndGenomes(),this.render()},render:function(e){this.options=_.extend(this.options,e);var t=this.templateToolBar(),i={id:this.options.id,is_admin:!1,is_anonym:!0,mutiple_add_dataset_options:!1};Galaxy.user&&(i.is_admin=Galaxy.user.isAdmin(),i.is_anonym=Galaxy.user.isAnonymous(),null===Galaxy.config.user_library_import_dir&&!1===Galaxy.config.allow_library_path_paste&&null===Galaxy.config.library_import_dir||(i.mutiple_add_dataset_options=!0)),this.$el.html(t(i))},renderPaginator:function(e){this.options=_.extend(this.options,e);var t=this.templatePaginator();$("body").find(".folder-paginator").html(t({id:this.options.id,show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_items_count:this.options.total_items_count,items_shown:this.options.items_shown,folder_page_size:Galaxy.libraries.preferences.get("folder_page_size")}))},configureElements:function(e){this.options=_.extend(this.options,e),!0===this.options.can_add_library_item?$(".add-library-items").show():$(".add-library-items").hide(),!0===this.options.contains_file_or_folder&&Galaxy.user?Galaxy.user.isAnonymous()?($(".dataset-manipulation").show(),$(".logged-dataset-manipulation").hide()):($(".logged-dataset-manipulation").show(),$(".dataset-manipulation").show()):($(".logged-dataset-manipulation").hide(),$(".dataset-manipulation").hide()),this.$el.find("[data-toggle]").tooltip()},createFolderFromModal:function(e){e.preventDefault(),e.stopPropagation();var t=this,i=this.templateNewFolderInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,r.default)("Create New Folder"),body:i(),buttons:{Create:function(){t.create_new_folder_event()},Close:function(){Galaxy.modal.hide()}}})},create_new_folder_event:function(){var e=this.serialize_new_folder();if(this.validate_new_folder(e)){var t,i=new c.default.FolderAsModel,a=Backbone.history.fragment.split("/");t=a.indexOf("page")>-1?a[a.length-3]:a[a.length-1],i.url=i.urlRoot+t,i.save(e,{success:function(e){Galaxy.modal.hide(),d.default.success("Folder created."),e.set({type:"folder"}),Galaxy.libraries.folderListView.collection.add(e)},error:function(e,t){Galaxy.modal.hide(),void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})}else d.default.error("Folder's name is missing.");return!1},serialize_new_folder:function(){return{name:$("input[name='Name']").val(),description:$("input[name='Description']").val()}},validate_new_folder:function(e){return""!==e.name},modalBulkImport:function(){if(0===this.findCheckedRows().length)d.default.info("You must select some datasets first.");else{var e=this;this.histories=new c.default.GalaxyHistories,this.histories.fetch().done(function(){var t=e.templateBulkImportInModal();e.modal=Galaxy.modal,e.modal.show({closing_events:!0,title:(0,r.default)("Import into History"),body:t({histories:e.histories.models}),buttons:{Import:function(){e.importAllIntoHistory()},Close:function(){Galaxy.modal.hide()}}})}).fail(function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")})}},importAllIntoHistory:function(){this.modal.disableButton("Import");var e=this.modal.$("input[name=history_name]").val(),t=this;if(""!==e)$.post(Galaxy.root+"api/histories",{name:e}).done(function(e){t.options.last_used_history_id=e.id,t.processImportToHistory(e.id,e.name)}).fail(function(e,t,i){d.default.error("An error occurred.")}).always(function(){t.modal.enableButton("Import")});else{var i=$("select[name=dataset_import_bulk] option:selected").val();this.options.last_used_history_id=i;var a=$("select[name=dataset_import_bulk] option:selected").text();this.processImportToHistory(i,a),this.modal.enableButton("Import")}},processImportToHistory:function(e,t){var i=[],a=[];this.findCheckedRows().each(function(){var e=$(this).closest("tr").data("id");"F"==e.substring(0,1)?a.push(e):i.push(e)});for(var o=[],s=i.length-1;s>=0;s--){var l=i[s];(n=new c.default.HistoryItem).url=n.urlRoot+e+"/contents",n.content=l,n.source="library",o.push(n)}for(s=a.length-1;s>=0;s--){var r=a[s],n=new c.default.HistoryItem;n.url=n.urlRoot+e+"/contents",n.content=r,n.source="library_folder",o.push(n)}this.initChainCallControl({length:o.length,action:"to_history",history_name:t}),jQuery.getJSON(Galaxy.root+"history/set_as_current?id="+e),this.chainCallImportingIntoHistory(o,t)},updateProgress:function(){this.progress+=this.progressStep,$(".progress-bar-import").width(Math.round(this.progress)+"%");var e=Math.round(this.progress)+"% Complete";$(".completion_span").text(e)},download:function(e,t){var i=[],a=[];this.findCheckedRows().each(function(){var e=$(this).closest("tr").data("id");"F"==e.substring(0,1)?a.push(e):i.push(e)});var o=Galaxy.root+"api/libraries/datasets/download/"+t,s={ld_ids:i,folder_ids:a};this.processDownload(o,s,"get")},processDownload:function(e,t,i){if(e&&t){t="string"==typeof t?t:$.param(t);var a="";$.each(t.split("&"),function(){var e=this.split("=");a+='<input type="hidden" name="'+e[0]+'" value="'+e[1]+'" />'}),$('<form action="'+e+'" method="'+(i||"post")+'">'+a+"</form>").appendTo("body").submit().remove(),d.default.info("Your download will begin soon.")}else d.default.error("An error occurred.")},addFilesFromHistoryModal:function(){this.histories=new c.default.GalaxyHistories;var e=this;this.histories.fetch().done(function(){e.modal=Galaxy.modal;var t=e.templateAddFilesFromHistory();e.modal.show({closing_events:!0,title:(0,r.default)("Adding datasets from your history"),body:t({histories:e.histories.models}),buttons:{Add:function(){e.addAllDatasetsFromHistory()},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),e.fetchAndDisplayHistoryContents(e.histories.models[0].id),$("#dataset_add_bulk").change(function(t){e.fetchAndDisplayHistoryContents(t.target.value)})}).fail(function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")})},importFilesFromPathModal:function(){var e=this;this.modal=Galaxy.modal;var t=this.templateImportPathModal();this.modal.show({closing_events:!0,title:(0,r.default)("Please enter paths to import"),body:t({}),buttons:{Import:function(){e.importFromPathsClicked(e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+e.id,{trigger:!0})}}),this.renderSelectBoxes()},fetchExtAndGenomes:function(){var e=this;n.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){e.list_extensions=[];for(var i in t)e.list_extensions.push({id:t[i].extension,text:t[i].extension,description:t[i].description,description_url:t[i].description_url});e.list_extensions.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0}),e.list_extensions.unshift(e.auto)},cache:!0}),n.default.get({url:Galaxy.root+"api/genomes",success:function(t){e.list_genomes=[];for(var i in t)e.list_genomes.push({id:t[i][1],text:t[i][0]});e.list_genomes.sort(function(e,t){return e.id>t.id?1:e.id<t.id?-1:0})},cache:!0})},renderSelectBoxes:function(){var e=this;this.select_genome=new p.default.View({css:"library-genome-select",data:e.list_genomes,container:Galaxy.modal.$el.find("#library_genome_select"),value:"?"}),this.select_extension=new p.default.View({css:"library-extension-select",data:e.list_extensions,container:Galaxy.modal.$el.find("#library_extension_select"),value:"auto"})},importFilesFromGalaxyFolderModal:function(e){var t=this,i=this.templateBrowserModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,r.default)("Please select folders or files"),body:i({}),buttons:{Import:function(){t.importFromJstreePath(t,e)},Close:function(){Galaxy.modal.hide()}},closing_callback:function(){Galaxy.libraries.library_router.navigate("folders/"+t.id,{trigger:!0})}}),$(".libimport-select-all").bind("click",function(){$("#jstree_browser").jstree("check_all")}),$(".libimport-select-none").bind("click",function(){$("#jstree_browser").jstree("uncheck_all")}),this.renderSelectBoxes(),e.disabled_jstree_element="folders",this.renderJstree(e),$("input[type=radio]").change(function(i){"jstree-disable-folders"===i.target.value?(e.disabled_jstree_element="folders",t.renderJstree(e),$(".jstree-folders-message").hide(),$(".jstree-preserve-structure").hide(),$(".jstree-files-message").show()):"jstree-disable-files"===i.target.value&&($(".jstree-files-message").hide(),$(".jstree-folders-message").show(),$(".jstree-preserve-structure").show(),e.disabled_jstree_element="files",t.renderJstree(e))})},renderJstree:function(e){this.options=_.extend(this.options,e);var t=e.source||"userdir",i=this.options.disabled_jstree_element;this.jstree=new c.default.Jstree,this.jstree.url=this.jstree.urlRoot+"?target="+t+"&format=jstree&disable="+i,this.jstree.fetch({success:function(e,t){$("#jstree_browser").jstree("destroy"),$("#jstree_browser").jstree({core:{data:e},plugins:["types","checkbox"],types:{folder:{icon:"jstree-folder"},file:{icon:"jstree-file"}},checkbox:{three_state:!1}})},error:function(e,t){void 0!==t.responseJSON?404001===t.responseJSON.err_code?d.default.warning(t.responseJSON.err_msg):d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})},importFromPathsClicked:function(){var e=this.modal.$el.find(".preserve-checkbox").is(":checked"),t=this.modal.$el.find(".link-checkbox").is(":checked"),i=this.modal.$el.find(".spacetab-checkbox").is(":checked"),a=this.modal.$el.find(".posix-checkbox").is(":checked"),o=this.modal.$el.find(".tag-files").is(":checked"),s=this.select_extension.value(),l=this.select_genome.value(),r=$("textarea#import_paths").val(),n=[];if(r){this.modal.disableButton("Import");for(var c=(r=r.split("\n")).length-1;c>=0;c--){var p=r[c].trim();0!==p.length&&n.push(p)}this.initChainCallControl({length:n.length,action:"adding_datasets"}),this.chainCallImportingFolders({paths:n,preserve_dirs:e,link_data:t,space_to_tab:i,to_posix_lines:a,source:"admin_path",file_type:s,tag_using_filenames:o,dbkey:l})}else d.default.info("Please enter a path relative to Galaxy root.")},initChainCallControl:function(e){var t;switch(e.action){case"adding_datasets":t=this.templateAddingDatasetsProgressBar(),this.modal.$el.find(".modal-body").html(t({folder_name:this.options.folder_name}));break;case"deleting_datasets":t=this.templateDeletingItemsProgressBar(),this.modal.$el.find(".modal-body").html(t());break;case"to_history":t=this.templateImportIntoHistoryProgressBar(),this.modal.$el.find(".modal-body").html(t({history_name:e.history_name}));break;default:Galaxy.emit.error("Wrong action specified.","datalibs")}this.progress=0,this.progressStep=100/e.length,this.options.chain_call_control.total_number=e.length,this.options.chain_call_control.failed_number=0},importFromJstreePath:function(e,t){var i=$("#jstree_browser").jstree().get_selected(!0),a=_.filter(i,function(e){return 0==e.state.disabled}),o=this.modal.$el.find(".preserve-checkbox").is(":checked"),s=this.modal.$el.find(".link-checkbox").is(":checked"),l=this.modal.$el.find(".spacetab-checkbox").is(":checked"),r=this.modal.$el.find(".posix-checkbox").is(":checked"),n=this.select_extension.value(),c=this.select_genome.value(),p=this.modal.$el.find(".tag-files").is(":checked"),h=a[0].type,u=[];if(a.length<1)d.default.info("Please select some items first.");else{this.modal.disableButton("Import");for(var f=a.length-1;f>=0;f--)void 0!==a[f].li_attr.full_path&&u.push(a[f].li_attr.full_path);if(this.initChainCallControl({length:u.length,action:"adding_datasets"}),"folder"===h){m=t.source+"_folder";this.chainCallImportingFolders({paths:u,preserve_dirs:o,link_data:s,space_to_tab:l,to_posix_lines:r,source:m,file_type:n,dbkey:c,tag_using_filenames:p})}else if("file"===h){var m=t.source+"_file";this.chainCallImportingUserdirFiles({paths:u,file_type:n,dbkey:c,link_data:s,space_to_tab:l,to_posix_lines:r,source:m,tag_using_filenames:p})}}},fetchAndDisplayHistoryContents:function(e){var t=this;new c.default.HistoryContents({id:e}).fetch({success:function(i){var a=t.templateHistoryContents();t.histories.get(e).set({contents:i}),t.modal.$el.find("#selected_history_content").html(a({history_contents:i.models.reverse()})),t.modal.$el.find(".history-import-select-all").bind("click",function(){$("#selected_history_content [type=checkbox]").prop("checked",!0)}),t.modal.$el.find(".history-import-unselect-all").bind("click",function(){$("#selected_history_content [type=checkbox]").prop("checked",!1)})},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})},addAllDatasetsFromHistory:function(){var e=this.modal.$el.find("#selected_history_content").find(":checked"),t=[],i=[],a=[];if(e.length<1)d.default.info("You must select some datasets first.");else{this.modal.disableButton("Add"),e.each(function(){var e=$(this).closest("li").data("id");if(e){var a=$(this).closest("li").data("name");t.push(e),i.push(a)}});for(var o=t.length-1;o>=0;o--){var s=t[o],l=new c.default.Item;l.url=Galaxy.root+"api/folders/"+this.options.id+"/contents","collection"===i[o]?l.set({from_hdca_id:s}):l.set({from_hda_id:s}),a.push(l)}this.initChainCallControl({length:a.length,action:"adding_datasets"}),this.chainCallAddingHdas(a)}},chainCallImportingIntoHistory:function(e,t){var i=this,a=e.pop();if(void 0===a)return 0===this.options.chain_call_control.failed_number?d.default.success("Selected datasets imported into history. Click this to start analyzing it.","",{onclick:function(){window.location=Galaxy.root}}):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?d.default.error("There was an error and no datasets were imported into history."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&d.default.warning("Some of the datasets could not be imported into history. Click this to see what was imported.","",{onclick:function(){window.location=Galaxy.root}}),Galaxy.modal.hide(),!0;$.when(a.save({content:a.content,source:a.source})).done(function(){i.updateProgress(),i.chainCallImportingIntoHistory(e,t)}).fail(function(){i.options.chain_call_control.failed_number+=1,i.updateProgress(),i.chainCallImportingIntoHistory(e,t)})},chainCallImportingUserdirFiles:function(e){var t=this,i=e.paths.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?(d.default.success("Selected files imported into the current folder"),Galaxy.modal.hide()):d.default.error("An error occured."),!0;$.when($.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+i+"&file_type="+e.file_type+"&link_data="+e.link_data+"&space_to_tab="+e.space_to_tab+"&to_posix_lines="+e.to_posix_lines+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(i){t.updateProgress(),t.chainCallImportingUserdirFiles(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingUserdirFiles(e)})},chainCallImportingFolders:function(e){var t=this,i=e.paths.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?(d.default.success("Selected folders and their contents imported into the current folder."),Galaxy.modal.hide()):d.default.error("An error occured."),!0;$.when($.post(Galaxy.root+"api/libraries/datasets?encoded_folder_id="+t.id+"&source="+e.source+"&path="+i+"&preserve_dirs="+e.preserve_dirs+"&link_data="+e.link_data+"&to_posix_lines="+e.to_posix_lines+"&space_to_tab="+e.space_to_tab+"&file_type="+e.file_type+"&dbkey="+e.dbkey+"&tag_using_filenames="+e.tag_using_filenames)).done(function(i){t.updateProgress(),t.chainCallImportingFolders(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallImportingFolders(e)})},chainCallAddingHdas:function(e){var t=this;this.added_hdas=new c.default.Folder;var i=e.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?d.default.success("Selected datasets from history added to the folder"):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?d.default.error("There was an error and no datasets were added to the folder."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&d.default.warning("Some of the datasets could not be added to the folder"),Galaxy.modal.hide(),this.added_hdas;$.when(i.save({from_hda_id:i.get("from_hda_id")})).done(function(i){Galaxy.libraries.folderListView.collection.add(i),t.updateProgress(),t.chainCallAddingHdas(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallAddingHdas(e)})},chainCallDeletingItems:function(e){var t=this;this.deleted_items=new c.default.Folder;var i=e.pop();if(void 0===i)return 0===this.options.chain_call_control.failed_number?d.default.success("Selected items were deleted."):this.options.chain_call_control.failed_number===this.options.chain_call_control.total_number?d.default.error("There was an error and no items were deleted. Please make sure you have sufficient permissions."):this.options.chain_call_control.failed_number<this.options.chain_call_control.total_number&&d.default.warning("Some of the items could not be deleted. Please make sure you have sufficient permissions."),Galaxy.modal.hide(),this.deleted_items;i.destroy().done(function(a){if(Galaxy.libraries.folderListView.collection.remove(i.id),t.updateProgress(),Galaxy.libraries.folderListView.options.include_deleted){var o=null;"folder"===a.type||"LibraryFolder"===a.model_class?o=new c.default.FolderAsModel(a):"file"===a.type||"LibraryDataset"===a.model_class?o=new c.default.Item(a):(Galaxy.emit.error("Unknown library item type found.","datalibs"),Galaxy.emit.error(a.type||a.model_class,"datalibs")),Galaxy.libraries.folderListView.collection.add(o)}t.chainCallDeletingItems(e)}).fail(function(){t.options.chain_call_control.failed_number+=1,t.updateProgress(),t.chainCallDeletingItems(e)})},checkIncludeDeleted:function(e){e.target.checked?Galaxy.libraries.folderListView.fetchFolder({include_deleted:!0}):Galaxy.libraries.folderListView.fetchFolder({include_deleted:!1})},deleteSelectedItems:function(){var e=[],t=[],i=this.findCheckedRows();if(0===i.length)d.default.info("You must select at least one item for deletion.");else{var a=this.templateDeletingItemsProgressBar();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,r.default)("Deleting selected items"),body:a({}),buttons:{Close:function(){Galaxy.modal.hide()}}}),this.options.chain_call_control.total_number=0,this.options.chain_call_control.failed_number=0,i.each(function(){var i=$(this).closest("tr").data("id");void 0!==i&&("F"==i.substring(0,1)?t.push(i):e.push(i))});var o=e.length+t.length;this.progressStep=100/o,this.progress=0;for(var s=[],l=e.length-1;l>=0;l--){var n=new c.default.Item({id:e[l]});s.push(n)}for(l=t.length-1;l>=0;l--){var p=new c.default.FolderAsModel({id:t[l]});s.push(p)}this.options.chain_call_control.total_number=o,this.chainCallDeletingItems(s)}},showLocInfo:function(){var e=null,t=this;null!==Galaxy.libraries.libraryListView?(e=Galaxy.libraries.libraryListView.collection.get(this.options.parent_library_id),this.showLocInfoModal(e)):(e=new c.default.Library({id:this.options.parent_library_id})).fetch({success:function(){t.showLocInfoModal(e)},error:function(e,t){void 0!==t.responseJSON?d.default.error(t.responseJSON.err_msg):d.default.error("An error occurred.")}})},showLocInfoModal:function(e){var t=this,i=this.templateLocInfoInModal();this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,r.default)("Location Details"),body:i({library:e,options:t.options}),buttons:{Close:function(){Galaxy.modal.hide()}}})},showImportModal:function(e){switch(e.source){case"history":this.addFilesFromHistoryModal();break;case"importdir":this.importFilesFromGalaxyFolderModal({source:"importdir"});break;case"path":this.importFilesFromPathModal();break;case"userdir":this.importFilesFromGalaxyFolderModal({source:"userdir"});break;default:Galaxy.libraries.library_router.back(),d.default.error("Invalid import source.")}},showPageSizePrompt:function(e){e.preventDefault();var t=prompt("How many items per page do you want to see?",Galaxy.libraries.preferences.get("folder_page_size"));null!=t&&t==parseInt(t)&&(Galaxy.libraries.preferences.set({folder_page_size:parseInt(t)}),Galaxy.libraries.folderListView.render({id:this.options.id,show_page:1}))},findCheckedRows:function(){return $("#folder_list_body").find(":checked")},templateToolBar:function(){return _.template(['<div class="library_style_container">','<div 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class="caret"></span>',"</button>",'<ul class="dropdown-menu" role="menu">','<li><a href="#folders/<%= id %>/import/history"> from History</a></li>',"<% if(Galaxy.config.user_library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/userdir"> from User Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li class="divider"></li>','<li class="dropdown-header">Admins only</li>',"<% if(Galaxy.config.library_import_dir !== null) { %>",'<li><a href="#folders/<%= id %>/import/importdir">from Import Directory</a></li>',"<% } %>","<% if(Galaxy.config.allow_library_path_paste) { %>",'<li><a href="#folders/<%= id %>/import/path">from Path</a></li>',"<% } %>","<% } %>","</ul>","</div>","<% } else { %>",'<a  data-placement="top" title="Add Datasets to Current Folder" style="display:none;" class="btn btn-default add-library-items" href="#folders/<%= id %>/import/history" role="button">','<span class="fa fa-plus"></span><span class="fa 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table-condensed">',"<thead>",'<th style="width: 25%;">library</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>",'<td><%- library.get("name") %></td>',"</tr>",'<% if(library.get("description") !== "") { %>',"<tr>","<td>description</td>",'<td><%- library.get("description") %></td>',"</tr>","<% } %>",'<% if(library.get("synopsis") !== "") { %>',"<tr>","<td>synopsis</td>",'<td><%- library.get("synopsis") %></td>',"</tr>","<% } %>",'<% if(library.get("create_time_pretty") !== "") { %>',"<tr>","<td>created</td>",'<td><span title="<%- library.get("create_time") %>"><%- library.get("create_time_pretty") %></span></td>',"</tr>","<% } %>","<tr>","<td>id</td>",'<td><%- library.get("id") %></td>',"</tr>","</tbody>","</table>",'<table class="grid table table-condensed">',"<thead>",'<th style="width: 25%;">folder</th>',"<th></th>","</thead>","<tbody>","<tr>","<td>name</td>","<td><%- options.folder_name %></td>","</tr>",'<% if(options.folder_description !== "") { %>',"<tr>","<td>description</td>","<td><%- options.folder_description %></td>","</tr>","<% } %>","<tr>","<td>id</td>","<td><%- options.id %></td>","</tr>","</tbody>","</table>","</div>"].join(""))},templateNewFolderInModal:function(){return _.template(['<div id="new_folder_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">',"</form>","</div>"].join(""))},templateBulkImportInModal:function(){return _.template(["<div>",'<div class="library-modal-item">',"Select history: ",'<select id="dataset_import_bulk" name="dataset_import_bulk" style="width:50%; margin-bottom: 1em; " autofocus>',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>",'<div class="library-modal-item">',"or create new: ",'<input type="text" name="history_name" value="" placeholder="name of the new history" style="width:50%;">',"</input>","</div>","</div>"].join(""))},templateImportIntoHistoryProgressBar:function(){return _.template(['<div class="import_text">',"Importing selected items to history <b><%= _.escape(history_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateAddingDatasetsProgressBar:function(){return _.template(['<div class="import_text">',"Adding selected datasets to library folder <b><%= _.escape(folder_name) %></b>","</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateDeletingItemsProgressBar:function(){return _.template(['<div class="import_text">',"</div>",'<div class="progress">','<div class="progress-bar progress-bar-import" role="progressbar" aria-valuenow="0" aria-valuemin="0" aria-valuemax="100" style="width: 00%;">','<span class="completion_span">0% Complete</span>',"</div>","</div>"].join(""))},templateBrowserModal:function(){return _.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-files-message">All files you select will be imported into the current folder ignoring their folder structure.</div>','<div class="alert alert-info jstree-folders-message" style="display:none;">All files within the selected folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom:1em;">','<label title="Switch to selecting files" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-folders" checked="checked"> Choose Files',"</label>",'<label title="Switch to selecting folders" class="radio-inline import-type-switch">','<input type="radio" name="jstree-radio" value="jstree-disable-files"> Choose Folders',"</label>","</div>",'<div style="margin-bottom:1em;">','<label class="checkbox-inline jstree-preserve-structure" style="display:none;">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<button title="Select all files" type="button" class="button primary-button libimport-select-all">',"Select all","</button>",'<button title="Select no files" type="button" class="button primary-button libimport-select-none">',"Unselect all","</button>","<hr />",'<div id="jstree_browser">',"</div>","<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<br>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateImportPathModal:function(){return _.template(['<div id="file_browser_modal">','<div class="alert alert-info jstree-folders-message">All files within the given folders and their subfolders will be imported into the current folder.</div>','<div style="margin-bottom: 0.5em;">','<label class="checkbox-inline">','<input class="preserve-checkbox" type="checkbox" value="preserve_directory_structure">',"Preserve directory structure","</label>",'<label class="checkbox-inline">','<input class="link-checkbox" type="checkbox" value="link_files">',"Link files instead of copying","</label>","<br>",'<label class="checkbox-inline">','<input class="posix-checkbox" type="checkbox" value="to_posix_lines" checked="checked">',"Convert line endings to POSIX","</label>",'<label class="checkbox-inline">','<input class="spacetab-checkbox" type="checkbox" value="space_to_tab">',"Convert spaces to tabs","</label>","</div>",'<textarea id="import_paths" class="form-control" rows="5" placeholder="Absolute paths (or paths relative to Galaxy root) separated by newline" autofocus></textarea>',"<hr />","<p>You can set extension type and genome for all imported datasets at once:</p>","<div>",'Type: <span id="library_extension_select" class="library-extension-select" />','Genome: <span id="library_genome_select" class="library-genome-select" />',"</div>","<div>",'<label class="checkbox-inline tag-files">',"Tag datasets based on file names",'<input class="tag-files" type="checkbox" value="tag_using_filenames">',"</label>","</div>","</div>"].join(""))},templateAddFilesFromHistory:function(){return _.template(['<div id="add_files_modal">',"<div>","1.&nbsp;Select history:&nbsp;",'<select id="dataset_add_bulk" name="dataset_add_bulk" style="width:66%; "> ',"<% _.each(histories, function(history) { %>",'<option value="<%= _.escape(history.get("id")) %>"><%= _.escape(history.get("name")) %></option>',"<% }); %>","</select>","</div>","<br/>",'<div id="selected_history_content">',"</div>","</div>"].join(""))},templateHistoryContents:function(){return _.template(["<p>2.&nbsp;Choose the datasets to import:</p>","<div>",'<button title="Select all datasets" type="button" class="button primary-button history-import-select-all">',"Select all","</button>",'<button title="Select all datasets" type="button" class="button primary-button history-import-unselect-all">',"Unselect all","</button>","</div>","<br>","<ul>","<% _.each(history_contents, function(history_item) { %>",'<% if (history_item.get("deleted") != true ) { %>','<% var item_name = history_item.get("name") %>','<% if (history_item.get("type") === "collection") { %>','<% var collection_type = history_item.get("collection_type") %>','<% if (collection_type === "list") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">',"<label>",'<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection)',"</label>","</li>","<% } else { %>",'<li><input style="margin: 0;" type="checkbox" onclick="return false;" disabled="disabled">','<span title="You can convert this collection into a collection of type list using the Collection Tools">','<%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %> (Dataset Collection of type <%= _.escape(collection_type) %> not supported.)',"</span>","</li>","<% } %>",'<% } else if (history_item.get("visible") === true && history_item.get("state") === "ok") { %>','<li data-id="<%= _.escape(history_item.get("id")) %>" data-name="<%= _.escape(history_item.get("type")) %>">','<label title="<%= _.escape(item_name) %>">','<input style="margin: 0;" type="checkbox"> <%= _.escape(history_item.get("hid")) %>: ','<%= item_name.length > 75 ? _.escape("...".concat(item_name.substr(-75))) : _.escape(item_name) %>',"</label>","</li>","<% } %>","<% } %>","<% }); %>","</ul>"].join(""))},templatePaginator:function(){return _.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#folders/<%= id %>/page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#folders/<%= id %>/page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#folders/<%= id %>/page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#folders/<%= id %>/page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#folders/<%= id %>/page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- items_shown %> items shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- folder_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_items_count %> total","</span>"].join(""))}});e.default={FolderToolbarView:h}});
\ No newline at end of file
diff --git a/static/scripts/mvc/library/library-librarytoolbar-view.js b/static/scripts/mvc/library/library-librarytoolbar-view.js
index f4736283d5e..97ca70ed632 100644
--- a/static/scripts/mvc/library/library-librarytoolbar-view.js
+++ b/static/scripts/mvc/library/library-librarytoolbar-view.js
@@ -1 +1 @@
-define("mvc/library/library-librarytoolbar-view",["exports","libs/toastr","mvc/library/library-model"],function(e,a,i){"use strict";function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var t=r(a),s=r(i),l=Backbone.View.extend({el:"#center",defaults:{search_term:""},events:{"click #create_new_library_btn":"createLibraryFromModal","click #include_deleted_chk":"includeDeletedChecked","click #exclude_restricted_chk":"excludeRestrictedChecked","click .page_size_prompt":"showPageSizePrompt","keyup .library-search-input":"searchLibraries"},initialize:function(e){this.options=_.defaults(this.options||{},e,this.defaults),this.render()},render:function(){var e=this.templateToolBar(),a=!1,i=!0;Galaxy.user&&(a=Galaxy.user.isAdmin(),i=Galaxy.user.isAnonymous()),this.$el.html(e({admin_user:a,anon_user:i})),a&&(this.$el.find("#include_deleted_chk")[0].checked=Galaxy.libraries.preferences.get("with_deleted"),this.$el.find("#exclude_restricted_chk")[0].checked=Galaxy.libraries.preferences.get("without_restricted"))},renderPaginator:function(e){this.options=_.extend(this.options,e);var a=this.templatePaginator();this.$el.find("#library_paginator").html(a({show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_libraries_count:this.options.total_libraries_count,libraries_shown:this.options.libraries_shown,library_page_size:Galaxy.libraries.preferences.get("library_page_size")}))},createLibraryFromModal:function(e){e.preventDefault(),e.stopPropagation();var a=this;this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:"Create New Library",body:this.templateNewLibraryInModal(),buttons:{Create:function(){a.createNewLibrary()},Close:function(){a.modal.hide()}}})},createNewLibrary:function(){var e=this.serializeNewLibrary();if(this.validateNewLibrary(e)){var a=this;(new s.default.Library).save(e,{success:function(e){Galaxy.libraries.libraryListView.collection.add(e),a.modal.hide(),a.clearLibraryModal(),Galaxy.libraries.libraryListView.render(),t.default.success("Library created.")},error:function(e,a){void 0!==a.responseJSON?t.default.error(a.responseJSON.err_msg):t.default.error("An error occured.")}})}else t.default.error("Library's name is missing.");return!1},showPageSizePrompt:function(e){e.preventDefault();var a=prompt("How many libraries per page do you want to see?",Galaxy.libraries.preferences.get("library_page_size"));null!=a&&a==parseInt(a)&&(Galaxy.libraries.preferences.set({library_page_size:parseInt(a)}),Galaxy.libraries.libraryListView.render({show_page:1}))},clearLibraryModal:function(){$("input[name='Name']").val(""),$("input[name='Description']").val(""),$("input[name='Synopsis']").val("")},serializeNewLibrary:function(){return{name:$("input[name='Name']").val(),description:$("input[name='Description']").val(),synopsis:$("input[name='Synopsis']").val()}},validateNewLibrary:function(e){return""!==e.name},includeDeletedChecked:function(e){e.target.checked?(Galaxy.libraries.preferences.set({with_deleted:!0}),Galaxy.libraries.libraryListView.fetchDeleted()):(Galaxy.libraries.preferences.set({with_deleted:!1}),Galaxy.libraries.libraryListView.render())},excludeRestrictedChecked:function(e){e.target.checked?Galaxy.libraries.preferences.set({without_restricted:!0}):Galaxy.libraries.preferences.set({without_restricted:!1}),Galaxy.libraries.libraryListView.render()},searchLibraries:function(e){var a=$(".library-search-input").val();this.options.search_term=a,Galaxy.libraries.libraryListView.searchLibraries(a)},templateToolBar:function(){return _.template(['<div class="library_style_container">','<div id="toolbar_form">','<div id="library_toolbar">','<form class="form-inline" role="form">','<span><strong><a href="#" title="Go to first page">DATA LIBRARIES</a></strong></span>','<span id="library_paginator" class="library-paginator">',"</span>",'<div class="form-group toolbar-item">','<input type="text" class="form-control library-search-input" placeholder="Search" size="30">',"</div>","<% if(admin_user === true) { %>",'<div class="checkbox toolbar-item" style="height: 20px;">',"<label>",'<input id="include_deleted_chk" type="checkbox">',"include deleted ","</input>","</label>","<label>",'<input id="exclude_restricted_chk" type="checkbox">',"exclude restricted","</input>","</label>","</div>",'<span class="toolbar-item" data-toggle="tooltip" data-placement="top" title="Create New Library">','<button id="create_new_library_btn" class="primary-button btn-xs" type="button"><span class="fa fa-plus"></span> New Library</button>',"</span>","<% } %>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/list-of-libraries/" target="_blank">','<button class="primary-button" type="button"><span class="fa fa-question-circle"></span> Help</button>',"</a>","</span>","</form>","</div>","</div>",'<div id="libraries_element">',"</div>","</div>"].join(""))},templatePaginator:function(){return _.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- libraries_shown %> libraries shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- library_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_libraries_count %> total","</span>"].join(""))},templateNewLibraryInModal:function(){return _.template(['<div id="new_library_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">','<input type="text" name="Synopsis" value="" placeholder="Synopsis">',"</form>","</div>"].join(""))}});e.default={LibraryToolbarView:l}});
\ No newline at end of file
+define("mvc/library/library-librarytoolbar-view",["exports","utils/localization","libs/toastr","mvc/library/library-model"],function(e,a,i,r){"use strict";function t(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var l=t(a),s=t(i),n=t(r),o=Backbone.View.extend({el:"#center",defaults:{search_term:""},events:{"click #create_new_library_btn":"createLibraryFromModal","click #include_deleted_chk":"includeDeletedChecked","click #exclude_restricted_chk":"excludeRestrictedChecked","click .page_size_prompt":"showPageSizePrompt","keyup .library-search-input":"searchLibraries"},initialize:function(e){this.options=_.defaults(this.options||{},e,this.defaults),this.render()},render:function(){var e=this.templateToolBar(),a=!1,i=!0;Galaxy.user&&(a=Galaxy.user.isAdmin(),i=Galaxy.user.isAnonymous()),this.$el.html(e({admin_user:a,anon_user:i})),a&&(this.$el.find("#include_deleted_chk")[0].checked=Galaxy.libraries.preferences.get("with_deleted"),this.$el.find("#exclude_restricted_chk")[0].checked=Galaxy.libraries.preferences.get("without_restricted"))},renderPaginator:function(e){this.options=_.extend(this.options,e);var a=this.templatePaginator();this.$el.find("#library_paginator").html(a({show_page:parseInt(this.options.show_page),page_count:parseInt(this.options.page_count),total_libraries_count:this.options.total_libraries_count,libraries_shown:this.options.libraries_shown,library_page_size:Galaxy.libraries.preferences.get("library_page_size")}))},createLibraryFromModal:function(e){e.preventDefault(),e.stopPropagation();var a=this;this.modal=Galaxy.modal,this.modal.show({closing_events:!0,title:(0,l.default)("Create New Library"),body:this.templateNewLibraryInModal(),buttons:{Create:function(){a.createNewLibrary()},Close:function(){a.modal.hide()}}})},createNewLibrary:function(){var e=this.serializeNewLibrary();if(this.validateNewLibrary(e)){var a=this;(new n.default.Library).save(e,{success:function(e){Galaxy.libraries.libraryListView.collection.add(e),a.modal.hide(),a.clearLibraryModal(),Galaxy.libraries.libraryListView.render(),s.default.success("Library created.")},error:function(e,a){void 0!==a.responseJSON?s.default.error(a.responseJSON.err_msg):s.default.error("An error occured.")}})}else s.default.error("Library's name is missing.");return!1},showPageSizePrompt:function(e){e.preventDefault();var a=prompt("How many libraries per page do you want to see?",Galaxy.libraries.preferences.get("library_page_size"));null!=a&&a==parseInt(a)&&(Galaxy.libraries.preferences.set({library_page_size:parseInt(a)}),Galaxy.libraries.libraryListView.render({show_page:1}))},clearLibraryModal:function(){$("input[name='Name']").val(""),$("input[name='Description']").val(""),$("input[name='Synopsis']").val("")},serializeNewLibrary:function(){return{name:$("input[name='Name']").val(),description:$("input[name='Description']").val(),synopsis:$("input[name='Synopsis']").val()}},validateNewLibrary:function(e){return""!==e.name},includeDeletedChecked:function(e){e.target.checked?(Galaxy.libraries.preferences.set({with_deleted:!0}),Galaxy.libraries.libraryListView.fetchDeleted()):(Galaxy.libraries.preferences.set({with_deleted:!1}),Galaxy.libraries.libraryListView.render())},excludeRestrictedChecked:function(e){e.target.checked?Galaxy.libraries.preferences.set({without_restricted:!0}):Galaxy.libraries.preferences.set({without_restricted:!1}),Galaxy.libraries.libraryListView.render()},searchLibraries:function(e){var a=$(".library-search-input").val();this.options.search_term=a,Galaxy.libraries.libraryListView.searchLibraries(a)},templateToolBar:function(){return _.template(['<div class="library_style_container">','<div id="toolbar_form">','<div id="library_toolbar">','<form class="form-inline" role="form">','<span><strong><a href="#" title="Go to first page">DATA LIBRARIES</a></strong></span>','<span id="library_paginator" class="library-paginator">',"</span>",'<div class="form-group toolbar-item">','<input type="text" class="form-control library-search-input" placeholder="Search" size="30">',"</div>","<% if(admin_user === true) { %>",'<div class="checkbox toolbar-item" style="height: 20px;">',"<label>",'<input id="include_deleted_chk" type="checkbox">',"include deleted ","</input>","</label>","<label>",'<input id="exclude_restricted_chk" type="checkbox">',"exclude restricted","</input>","</label>","</div>",'<span class="toolbar-item" data-toggle="tooltip" data-placement="top" title="Create New Library">','<button id="create_new_library_btn" class="primary-button btn-xs" type="button"><span class="fa fa-plus"></span> New Library</button>',"</span>","<% } %>",'<span class="help-button" data-toggle="tooltip" data-placement="top" title="See this screen annotated">','<a href="https://galaxyproject.org/data-libraries/screen/list-of-libraries/" target="_blank">','<button class="primary-button" type="button"><span class="fa fa-question-circle"></span> Help</button>',"</a>","</span>","</form>","</div>","</div>",'<div id="libraries_element">',"</div>","</div>"].join(""))},templatePaginator:function(){return _.template(['<ul class="pagination pagination-sm">',"<% if ( ( show_page - 1 ) > 0 ) { %>","<% if ( ( show_page - 1 ) > page_count ) { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } else { %>",'<li><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li><a href="#page/<% print( show_page - 1 ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>","<% } else { %>",'<li class="disabled"><a href="#page/1"><span class="fa fa-angle-double-left"></span></a></li>','<li class="disabled"><a href="#page/<% print( show_page ) %>"><% print( show_page - 1 ) %></a></li>',"<% } %>",'<li class="active">','<a href="#page/<% print( show_page ) %>"><% print( show_page ) %></a>',"</li>","<% if ( ( show_page ) < page_count ) { %>",'<li><a href="#page/<% print( show_page + 1 ) %>"><% print( show_page + 1 ) %></a></li>','<li><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } else { %>",'<li class="disabled"><a href="#page/<% print( show_page  ) %>"><% print( show_page + 1 ) %></a></li>','<li class="disabled"><a href="#page/<% print( page_count ) %>"><span class="fa fa-angle-double-right"></span></a></li>',"<% } %>","</ul>","<span>",' <%- libraries_shown %> libraries shown <a href="" data-toggle="tooltip" data-placement="top" title="currently <%- library_page_size %> per page" class="page_size_prompt">(change)</a>',"</span>","<span>"," <%- total_libraries_count %> total","</span>"].join(""))},templateNewLibraryInModal:function(){return _.template(['<div id="new_library_modal">',"<form>",'<input type="text" name="Name" value="" placeholder="Name" autofocus>','<input type="text" name="Description" value="" placeholder="Description">','<input type="text" name="Synopsis" value="" placeholder="Synopsis">',"</form>","</div>"].join(""))}});e.default={LibraryToolbarView:o}});
\ No newline at end of file
diff --git a/static/scripts/mvc/tool/tool-form-base.js b/static/scripts/mvc/tool/tool-form-base.js
index b537ddf6d73..d7d85b17870 100644
--- a/static/scripts/mvc/tool/tool-form-base.js
+++ b/static/scripts/mvc/tool/tool-form-base.js
@@ -1 +1 @@
-define("mvc/tool/tool-form-base",["exports","utils/utils","utils/deferred","mvc/ui/ui-misc","mvc/form/form-view","components/Citations.vue","libs/vue"],function(e,t,i,n,o,r,s){"use strict";function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});a(t);var l=a(i),d=a(n),u=a(o),c=a(r),f=a(s);e.default=u.default.extend({initialize:function(e){var t=this;this.deferred=new l.default,u.default.prototype.initialize.call(this,e),this._update(this.model.get("initialmodel")),this.model.get("listen_to_history")&&parent.Galaxy&&parent.Galaxy.currHistoryPanel&&this.listenTo(parent.Galaxy.currHistoryPanel.collection,"change",function(){t.model.get("onchange")()}),this.$el.on("remove",function(){t._destroy()})},_update:function(e){var t=this;(e=e||this.model.get("buildmodel"))?(this.deferred.reset(),this.deferred.execute(function(i){e(i,t),i.then(function(){t._render()})})):this._render()},_destroy:function(){var e=this;this.$el.off().hide(),this.deferred.execute(function(){u.default.prototype.remove.call(e),Galaxy.emit.debug("tool-form-base::_destroy()","Destroy view.")})},_render:function(){var e=this,t=this.model.attributes;this.model.set({title:t.fixed_title||"<b>"+t.name+"</b> "+t.description+" (Galaxy Version "+t.version+")",operations:!t.hide_operations&&this._operations(),onchange:function(){e.deferred.reset(),e.deferred.execute(function(t){e.model.get("postchange")(t,e)})}}),this.render(),this.model.get("collapsible")||this.$el.append($("<div/>").addClass("ui-margin-top-large").append(this._footer())),this.show_message&&this.message.update({status:"success",message:"Now you are using '"+t.name+"' version "+t.version+", id '"+t.id+"'.",persistent:!1}),this.show_message=!0},_operations:function(){var e=this,t=this.model.attributes,i=new d.default.ButtonMenu({icon:"fa-cubes",title:!t.narrow&&"Versions"||null,tooltip:"Select another tool version"});if(!t.sustain_version&&t.versions&&t.versions.length>1)for(var n in t.versions){var o=t.versions[n];o!=t.version&&i.addMenu({title:"Switch to "+o,version:o,icon:"fa-cube",onclick:function(){e.model.set("id",t.id.replace(t.version,this.version)),e.model.set("version",this.version),e._update()}})}else i.$el.hide();var r=new d.default.ButtonMenu({id:"options",icon:"fa-caret-down",title:!t.narrow&&"Options"||null,tooltip:"View available options"});return t.biostar_url&&(r.addMenu({icon:"fa-question-circle",title:"Question?",onclick:function(){window.open(t.biostar_url+"/p/new/post/")}}),r.addMenu({icon:"fa-search",title:"Search",onclick:function(){window.open(t.biostar_url+"/local/search/page/?q="+t.name)}})),r.addMenu({icon:"fa-share",title:"Share",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+Galaxy.root+"root?tool_id="+t.id)}}),Galaxy.user&&Galaxy.user.get("is_admin")&&r.addMenu({icon:"fa-download",title:"Download",onclick:function(){window.location.href=Galaxy.root+"api/tools/"+t.id+"/download"}}),t.requirements&&t.requirements.length>0&&r.addMenu({icon:"fa-info-circle",title:"Requirements",onclick:function(){!this.requirements_visible||e.portlet.collapsed?(this.requirements_visible=!0,e.portlet.expand(),e.message.update({persistent:!0,message:e._templateRequirements(t),status:"info"})):(this.requirements_visible=!1,e.message.update({message:""}))}}),t.sharable_url&&r.addMenu({icon:"fa-external-link",title:"See in Tool Shed",onclick:function(){window.open(t.sharable_url)}}),$.getJSON("/api/webhooks/tool-menu/all",function(e){_.each(e,function(e){e.activate&&e.config.function&&r.addMenu({icon:e.config.icon,title:e.config.title,onclick:function(){new Function("options",e.config.function)(t)}})})}),{menu:r,versions:i}},_footer:function(){var e=this.model.attributes,t=$("<div/>").append(this._templateHelp(e));if(e.citations){var i=f.default.extend(c.default),n=document.createElement("div");t.append(n),new i({propsData:{id:e.id,source:"tools"}}).$mount(n)}return t},_templateHelp:function(e){var t=$("<div/>").addClass("ui-form-help").append(e.help);return t.find("a").attr("target","_blank"),t},_templateRequirements:function(e){var t=e.requirements.length;if(t>0){var i="This tool requires ";_.each(e.requirements,function(e,n){i+=e.name+(e.version?" (Version "+e.version+")":"")+(n<t-2?", ":n==t-2?" and ":"")});var n=$("<a/>").attr("target","_blank").attr("href","https://galaxyproject.org/tools/requirements/").text("here");return $("<span/>").append(i+". Click ").append(n).append(" for more information.")}return"No requirements found."}})});
\ No newline at end of file
+define("mvc/tool/tool-form-base",["exports","utils/localization","utils/utils","utils/deferred","mvc/ui/ui-misc","mvc/form/form-view","components/Citations.vue","libs/vue"],function(e,t,i,n,o,r,a,s){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var u=l(t),d=(l(i),l(n)),c=l(o),f=l(r),p=l(a),h=l(s);e.default=f.default.extend({initialize:function(e){var t=this;this.deferred=new d.default,f.default.prototype.initialize.call(this,e),this._update(this.model.get("initialmodel")),this.model.get("listen_to_history")&&parent.Galaxy&&parent.Galaxy.currHistoryPanel&&this.listenTo(parent.Galaxy.currHistoryPanel.collection,"change",function(){t.model.get("onchange")()}),this.$el.on("remove",function(){t._destroy()})},_update:function(e){var t=this;(e=e||this.model.get("buildmodel"))?(this.deferred.reset(),this.deferred.execute(function(i){e(i,t),i.then(function(){t._render()})})):this._render()},_destroy:function(){var e=this;this.$el.off().hide(),this.deferred.execute(function(){f.default.prototype.remove.call(e),Galaxy.emit.debug("tool-form-base::_destroy()","Destroy view.")})},_render:function(){var e=this,t=this.model.attributes;this.model.set({title:t.fixed_title||"<b>"+t.name+"</b> "+t.description+" (Galaxy Version "+t.version+")",operations:!t.hide_operations&&this._operations(),onchange:function(){e.deferred.reset(),e.deferred.execute(function(t){e.model.get("postchange")(t,e)})}}),this.render(),this.model.get("collapsible")||this.$el.append($("<div/>").addClass("ui-margin-top-large").append(this._footer())),this.show_message&&this.message.update({status:"success",message:"Now you are using '"+t.name+"' version "+t.version+", id '"+t.id+"'.",persistent:!1}),this.show_message=!0},_operations:function(){var e=this,t=this.model.attributes,i=new c.default.ButtonMenu({icon:"fa-cubes",title:!t.narrow&&"Versions"||null,tooltip:"Select another tool version"});if(!t.sustain_version&&t.versions&&t.versions.length>1)for(var n in t.versions){var o=t.versions[n];o!=t.version&&i.addMenu({title:"Switch to "+o,version:o,icon:"fa-cube",onclick:function(){e.model.set("id",t.id.replace(t.version,this.version)),e.model.set("version",this.version),e._update()}})}else i.$el.hide();var r=new c.default.ButtonMenu({id:"options",icon:"fa-caret-down",title:!t.narrow&&"Options"||null,tooltip:"View available options"});return t.biostar_url&&(r.addMenu({icon:"fa-question-circle",title:"Question?",onclick:function(){window.open(t.biostar_url+"/p/new/post/")}}),r.addMenu({icon:"fa-search",title:(0,u.default)("Search"),onclick:function(){window.open(t.biostar_url+"/local/search/page/?q="+t.name)}})),r.addMenu({icon:"fa-share",title:(0,u.default)("Share"),onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+Galaxy.root+"root?tool_id="+t.id)}}),Galaxy.user&&Galaxy.user.get("is_admin")&&r.addMenu({icon:"fa-download",title:(0,u.default)("Download"),onclick:function(){window.location.href=Galaxy.root+"api/tools/"+t.id+"/download"}}),t.requirements&&t.requirements.length>0&&r.addMenu({icon:"fa-info-circle",title:(0,u.default)("Requirements"),onclick:function(){!this.requirements_visible||e.portlet.collapsed?(this.requirements_visible=!0,e.portlet.expand(),e.message.update({persistent:!0,message:e._templateRequirements(t),status:"info"})):(this.requirements_visible=!1,e.message.update({message:""}))}}),t.sharable_url&&r.addMenu({icon:"fa-external-link",title:(0,u.default)("See in Tool Shed"),onclick:function(){window.open(t.sharable_url)}}),$.getJSON("/api/webhooks/tool-menu/all",function(e){_.each(e,function(e){e.activate&&e.config.function&&r.addMenu({icon:e.config.icon,title:e.config.title,onclick:function(){new Function("options",e.config.function)(t)}})})}),{menu:r,versions:i}},_footer:function(){var e=this.model.attributes,t=$("<div/>").append(this._templateHelp(e));if(e.citations){var i=h.default.extend(p.default),n=document.createElement("div");t.append(n),new i({propsData:{id:e.id,source:"tools"}}).$mount(n)}return t},_templateHelp:function(e){var t=$("<div/>").addClass("ui-form-help").append(e.help);return t.find("a").attr("target","_blank"),t},_templateRequirements:function(e){var t=e.requirements.length;if(t>0){var i="This tool requires ";_.each(e.requirements,function(e,n){i+=e.name+(e.version?" (Version "+e.version+")":"")+(n<t-2?", ":n==t-2?" and ":"")});var n=$("<a/>").attr("target","_blank").attr("href","https://galaxyproject.org/tools/requirements/").text("here");return $("<span/>").append(i+". Click ").append(n).append(" for more information.")}return"No requirements found."}})});
\ No newline at end of file
diff --git a/static/scripts/mvc/tool/tool-form-composite.js b/static/scripts/mvc/tool/tool-form-composite.js
index 6030ac709de..011a1a1fda9 100644
--- a/static/scripts/mvc/tool/tool-form-composite.js
+++ b/static/scripts/mvc/tool/tool-form-composite.js
@@ -1 +1 @@
-define("mvc/tool/tool-form-composite",["exports","utils/utils","utils/deferred","mvc/ui/ui-misc","mvc/form/form-view","mvc/form/form-data","mvc/tool/tool-form-base","mvc/ui/ui-modal","mvc/webhooks","mvc/workflow/workflow-icons"],function(e,t,s,i,a,n,o,r,l,p){"use strict";function d(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var u=d(t),h=d(s),f=d(i),c=d(a),m=d(n),w=d(o),v=d(r),g=d(l),b=d(p),y=Backbone.View.extend({initialize:function(e){var t=this;this.modal=parent.Galaxy.modal||new v.default.View,this.model=e&&e.model||new Backbone.Model(e),this.deferred=new h.default,this.setElement($("<div/>").addClass("ui-form-composite").append(this.$message=$("<div/>")).append(this.$header=$("<div/>")).append(this.$steps=$("<div/>"))),$("body").append(this.$el),this._configure(),this.render(),$(window).resize(function(){t._refresh()})},_refresh:function(e){var t=_.reduce(this.$el.children(),function(e,t){return e+$(t).outerHeight()},0)-this.$steps.height()+90;this.$steps.css("height",$(window).height()-t)},_configure:function(){function e(e,i){for(var a,n=/\$\{(.+?)\}/g;a=n.exec(String(e));){var o=a[1];i(t.wp_inputs[o]=t.wp_inputs[o]||{label:o,name:o,type:"text",color:"hsl( "+100*++s+", 70%, 30% )",style:"ui-form-wp-source",links:[]})}}var t=this;this.forms=[],this.steps=[],this.links=[],this.parms=[],_.each(this.model.get("steps"),function(e,s){Galaxy.emit.debug("tool-form-composite::initialize()",s+" : Preparing workflow step.");var i=b.default[e.step_type],a=parseInt(s+1)+": "+(e.step_label||e.step_name);e.annotation&&(a+=" - "+e.annotation),e.step_version&&(a+=" (Galaxy Version "+e.step_version+")"),e=u.default.merge({index:s,fixed_title:_.escape(a),icon:i||"",help:null,citations:null,collapsible:!0,collapsed:s>0&&!t._isDataStep(e),sustain_version:!0,sustain_repeats:!0,sustain_conditionals:!0,narrow:!0,text_enable:"Edit",text_disable:"Undo",cls_enable:"fa fa-edit",cls_disable:"fa fa-undo",errors:e.messages,initial_errors:!0,cls:"ui-portlet-narrow",hide_operations:!0,needs_refresh:!1,always_refresh:"tool"!=e.step_type},e),t.steps[s]=e,t.links[s]=[],t.parms[s]={}}),_.each(this.steps,function(e,s){m.default.visitInputs(e.inputs,function(e,i){t.parms[s][i]=e})}),_.each(this.steps,function(e,s){_.each(e.output_connections,function(e){_.each(t.steps,function(i,a){i.step_index===e.input_step_index&&t.links[s].push(i)})})}),_.each(this.steps,function(e,s){_.each(t.steps,function(i,a){var n={};_.each(e.output_connections,function(e){i.step_index===e.input_step_index&&(n[e.input_name]=e)}),_.each(t.parms[a],function(t,i){var a=n[i];a&&(t.type="hidden",t.help=t.step_linked?t.help+", ":"",t.help+="Output dataset '"+a.output_name+"' from step "+(parseInt(s)+1),t.step_linked=t.step_linked||[],t.step_linked.push(e))})})});var s=0;this.wp_inputs={},_.each(this.steps,function(s,i){_.each(t.parms[i],function(t,i){e(t.value,function(e){e.links.push(s),t.wp_linked=!0,t.type="text",t.backdrop=!0,t.style="ui-form-wp-target"})}),_.each(s.post_job_actions,function(t){_.each(t.action_arguments,function(t){e(t,function(){})})})}),_.each(this.steps,function(e,s){if("tool"==e.step_type){var i=!0;m.default.visitInputs(e.inputs,function(s,a,n){var o=s.value&&"RuntimeValue"==s.value.__class__,r=-1!=["data","data_collection"].indexOf(s.type),l=n[s.data_ref];s.step_linked&&!t._isDataStep(s.step_linked)&&(i=!1),s.options&&(0==s.options.length&&!i||s.wp_linked)&&(s.is_workflow=!0),l&&(s.is_workflow=l.step_linked&&!t._isDataStep(l.step_linked)||s.wp_linked),(r||s.value&&"RuntimeValue"==s.value.__class__&&!s.step_linked)&&(e.collapsed=!1),o&&(s.value=s.default_value),s.flavor="workflow",o||r||"hidden"===s.type||s.wp_linked||(s.optional||!u.default.isEmpty(s.value)&&""!==s.value)&&(s.collapsible_value=s.value,s.collapsible_preview=!0)})}})},render:function(){var e=this;this.deferred.reset(),this._renderHeader(),this._renderMessage(),this._renderParameters(),this._renderHistory(),_.each(this.steps,function(t){e._renderStep(t)})},_renderHeader:function(){var e=this;this.execute_btn=new f.default.Button({icon:"fa-check",title:"Run workflow",cls:"btn btn-primary",onclick:function(){e._execute()}}),this.$header.addClass("ui-form-header").empty().append(new f.default.Label({title:"Workflow: "+this.model.get("name")}).$el).append(this.execute_btn.$el)},_renderMessage:function(){this.$message.empty(),this.model.get("has_upgrade_messages")&&this.$message.append(new f.default.Message({message:"Some tools in this workflow may have changed since it was last saved or some errors were found. The workflow may still run, but any new options will have default values. Please review the messages below to make a decision about whether the changes will affect your analysis.",status:"warning",persistent:!0,fade:!1}).$el);var e=this.model.get("step_version_changes");e&&e.length>0&&this.$message.append(new f.default.Message({message:"Some tools are being executed with different versions compared to those available when this workflow was last saved because the other versions are not or no longer available on this Galaxy instance. To upgrade your workflow and dismiss this message simply edit the workflow and re-save it.",status:"warning",persistent:!0,fade:!1}).$el)},_renderParameters:function(){var e=this;this.wp_form=null,_.isEmpty(this.wp_inputs)||(this.wp_form=new c.default({title:"<b>Workflow Parameters</b>",inputs:this.wp_inputs,cls:"ui-portlet-narrow",onchange:function(){_.each(e.wp_form.input_list,function(t,s){_.each(t.links,function(t){e._refreshStep(t)})})}}),this._append(this.$steps.empty(),this.wp_form.$el))},_renderHistory:function(){this.history_form=new c.default({cls:"ui-portlet-narrow",title:"<b>History Options</b>",inputs:[{type:"conditional",name:"new_history",test_param:{name:"check",label:"Send results to a new history",type:"boolean",value:"false",help:""},cases:[{value:"true",inputs:[{name:"name",label:"History name",type:"text",value:this.model.get("name")}]}]}]}),this._append(this.$steps,this.history_form.$el)},_renderStep:function(e){var t=this,s=null;this.deferred.execute(function(i){if(t.$steps.addClass("ui-steps"),"tool"==e.step_type)e.postchange=function(t,s){var i={tool_id:e.id,tool_version:e.version,inputs:$.extend(!0,{},s.data.create())};s.wait(!0),Galaxy.emit.debug("tool-form-composite::postchange()","Sending current state.",i),u.default.request({type:"POST",url:Galaxy.root+"api/tools/"+e.id+"/build",data:i,success:function(e){s.update(e),s.wait(!1),Galaxy.emit.debug("tool-form-composite::postchange()","Received new model.",e),t.resolve()},error:function(e){Galaxy.emit.debug("tool-form-composite::postchange()","Refresh request failed.",e),t.reject()}})},s=new w.default(e),e.post_job_actions&&e.post_job_actions.length&&s.portlet.append($("<div/>").addClass("ui-form-element-disabled").append($("<div/>").addClass("ui-form-title").html("<b>Job Post Actions</b>")).append($("<div/>").addClass("ui-form-preview").html(_.reduce(e.post_job_actions,function(e,t){return e+" "+t.short_str},""))));else{var a=-1!=["data_input","data_collection_input"].indexOf(e.step_type);_.each(e.inputs,function(e){e.flavor="module",e.hide_label=a}),s=new c.default(u.default.merge({title:e.fixed_title,onchange:function(){_.each(t.links[e.index],function(e){t._refreshStep(e)})},inputs:e.inputs&&e.inputs.length>0?e.inputs:[{type:"hidden",name:"No options available.",ignore:null}]},e))}t.forms[e.index]=s,t._append(t.$steps,s.$el),t._refresh(),e.needs_refresh&&t._refreshStep(e),s.portlet[t.show_progress?"disable":"enable"](),t.show_progress&&t.execute_btn.model.set({wait:!0,wait_text:"Preparing...",percentage:100*(e.index+1)/t.steps.length}),Galaxy.emit.debug("tool-form-composite::initialize()",e.index+" : Workflow step state ready.",e),setTimeout(function(){i.resolve()},0)})},_refreshStep:function(e){var t=this,s=this.forms[e.index];s?(_.each(t.parms[e.index],function(e,i){if(e.step_linked||e.wp_linked){var a=s.field_list[s.data.match(i)];if(a){var n=void 0;if(e.step_linked)n={values:[]},_.each(e.step_linked,function(e){if(t._isDataStep(e)){var s=t.forms[e.index].data.create().input;s&&_.each(s.values,function(e){n.values.push(e)})}}),!e.multiple&&n.values.length>0&&(n={values:[n.values[0]]});else if(e.wp_linked){n=e.value;for(var o,r=/\$\{(.+?)\}/g;o=r.exec(e.value);){var l=t.wp_form.field_list[t.wp_form.data.match(o[1])],p=l&&l.value();p&&(n=n.split(o[0]).join(p))}}void 0!==n&&a.value(n)}}}),s.trigger("change")):e.needs_refresh=!0},_refreshHistory:function(){var e=this,t=parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.model;this._refresh_history&&clearTimeout(this._refresh_history),t&&t.refresh().success(function(){0===t.numOfUnfinishedShownContents()&&(e._refresh_history=setTimeout(function(){e._refreshHistory()},t.UPDATE_DELAY))})},_execute:function(){var e=this;this.show_progress=!0,this._enabled(!1),this.deferred.execute(function(t){setTimeout(function(){t.resolve(),e._submit()},0)})},_submit:function(){var e=this,t=this.history_form.data.create(),s={new_history_name:t["new_history|name"]?t["new_history|name"]:null,history_id:t["new_history|name"]?null:this.model.get("history_id"),replacement_params:this.wp_form?this.wp_form.data.create():{},parameters:{},parameters_normalized:!0,batch:!0},i=!0;for(var a in this.forms){var n=this.forms[a],o=n.data.create(),r=e.steps[a],l=r.step_index;n.trigger("reset");for(var p in o){var d=o[p],h=n.data.match(p),f=(n.field_list[h],n.input_list[h]);if(!f.step_linked){if(!(i=this._isDataStep(r)?d&&d.values&&d.values.length>0:f.optional||f.is_workflow&&""!==d||!f.is_workflow&&null!==d)){n.highlight(h);break}s.parameters[l]=s.parameters[l]||{},s.parameters[l][p]=o[p]}}if(!i)break}i?(Galaxy.emit.debug("tool-form-composite::submit()","Validation complete.",s),u.default.request({type:"POST",url:Galaxy.root+"api/workflows/"+this.model.id+"/invocations",data:s,success:function(t){if(Galaxy.emit.debug("tool-form-composite::submit","Submission successful.",t),e.$el.children().hide(),e.$el.append(e._templateSuccess(t)),$.isArray(t)&&t.length>0){e.$el.append($("<div/>",{id:"webhook-view"}));new g.default.WebhookView({urlRoot:Galaxy.root+"api/webhooks/workflow",toolId:s.tool_id,toolVersion:s.tool_version})}e._refreshHistory()},error:function(t){Galaxy.emit.debug("tool-form-composite::submit","Submission failed.",t);var i=!1;if(t&&t.err_data)for(var a in e.forms){var n=e.forms[a],o=t.err_data[n.model.get("step_index")];if(o){var r=n.data.matchResponse(o);for(var l in r){n.highlight(l,r[l]),i=!0;break}}}i||e.modal.show({title:"Workflow submission failed",body:e._templateError(s,t&&t.err_msg),buttons:{Close:function(){e.modal.hide()}}})},complete:function(){e._enabled(!0)}})):(e._enabled(!0),Galaxy.emit.debug("tool-form-composite::submit()","Validation failed.",s))},_append:function(e,t){e.append("<p/>").append(t)},_enabled:function(e){this.execute_btn.model.set({wait:!e,wait_text:"Sending...",percentage:-1}),this.wp_form&&this.wp_form.portlet[e?"enable":"disable"](),this.history_form&&this.history_form.portlet[e?"enable":"disable"](),_.each(this.forms,function(t){t&&t.portlet[e?"enable":"disable"]()})},_isDataStep:function(e){for(var t=$.isArray(e)?e:[e],s=0;s<t.length;s++){var i=t[s];if(!i||!i.step_type||!i.step_type.startsWith("data"))return!1}return!0},_templateSuccess:function(e){return $.isArray(e)&&e.length>0?$("<div/>").addClass("donemessagelarge").append($("<p/>").html("Successfully invoked workflow <b>"+u.default.sanitize(this.model.get("name"))+"</b>"+(e.length>1?" <b>"+e.length+" times</b>":"")+".")).append($("<p/>").append("<b/>").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")):this._templateError(e,"Invalid success response. No invocations found.")},_templateError:function(e,t){return $("<div/>").addClass("errormessagelarge").append($("<p/>").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. "+(JSON.stringify(t)||""))).append($("<pre/>").text(JSON.stringify(e,null,4)))}});e.default={View:y}});
\ No newline at end of file
+define("mvc/tool/tool-form-composite",["exports","utils/localization","utils/utils","utils/deferred","mvc/ui/ui-misc","mvc/form/form-view","mvc/form/form-data","mvc/tool/tool-form-base","mvc/ui/ui-modal","mvc/webhooks","mvc/workflow/workflow-icons"],function(e,t,s,i,a,n,o,r,l,p,u){"use strict";function d(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var h=d(t),f=d(s),c=d(i),m=d(a),w=d(n),v=d(o),g=d(r),b=d(l),y=d(p),k=d(u),x=Backbone.View.extend({initialize:function(e){var t=this;this.modal=parent.Galaxy.modal||new b.default.View,this.model=e&&e.model||new Backbone.Model(e),this.deferred=new c.default,this.setElement($("<div/>").addClass("ui-form-composite").append(this.$message=$("<div/>")).append(this.$header=$("<div/>")).append(this.$steps=$("<div/>"))),$("body").append(this.$el),this._configure(),this.render(),$(window).resize(function(){t._refresh()})},_refresh:function(e){var t=_.reduce(this.$el.children(),function(e,t){return e+$(t).outerHeight()},0)-this.$steps.height()+90;this.$steps.css("height",$(window).height()-t)},_configure:function(){function e(e,i){for(var a,n=/\$\{(.+?)\}/g;a=n.exec(String(e));){var o=a[1];i(t.wp_inputs[o]=t.wp_inputs[o]||{label:o,name:o,type:"text",color:"hsl( "+100*++s+", 70%, 30% )",style:"ui-form-wp-source",links:[]})}}var t=this;this.forms=[],this.steps=[],this.links=[],this.parms=[],_.each(this.model.get("steps"),function(e,s){Galaxy.emit.debug("tool-form-composite::initialize()",s+" : Preparing workflow step.");var i=k.default[e.step_type],a=parseInt(s+1)+": "+(e.step_label||e.step_name);e.annotation&&(a+=" - "+e.annotation),e.step_version&&(a+=" (Galaxy Version "+e.step_version+")"),e=f.default.merge({index:s,fixed_title:_.escape(a),icon:i||"",help:null,citations:null,collapsible:!0,collapsed:s>0&&!t._isDataStep(e),sustain_version:!0,sustain_repeats:!0,sustain_conditionals:!0,narrow:!0,text_enable:"Edit",text_disable:"Undo",cls_enable:"fa fa-edit",cls_disable:"fa fa-undo",errors:e.messages,initial_errors:!0,cls:"ui-portlet-narrow",hide_operations:!0,needs_refresh:!1,always_refresh:"tool"!=e.step_type},e),t.steps[s]=e,t.links[s]=[],t.parms[s]={}}),_.each(this.steps,function(e,s){v.default.visitInputs(e.inputs,function(e,i){t.parms[s][i]=e})}),_.each(this.steps,function(e,s){_.each(e.output_connections,function(e){_.each(t.steps,function(i,a){i.step_index===e.input_step_index&&t.links[s].push(i)})})}),_.each(this.steps,function(e,s){_.each(t.steps,function(i,a){var n={};_.each(e.output_connections,function(e){i.step_index===e.input_step_index&&(n[e.input_name]=e)}),_.each(t.parms[a],function(t,i){var a=n[i];a&&(t.type="hidden",t.help=t.step_linked?t.help+", ":"",t.help+="Output dataset '"+a.output_name+"' from step "+(parseInt(s)+1),t.step_linked=t.step_linked||[],t.step_linked.push(e))})})});var s=0;this.wp_inputs={},_.each(this.steps,function(s,i){_.each(t.parms[i],function(t,i){e(t.value,function(e){e.links.push(s),t.wp_linked=!0,t.type="text",t.backdrop=!0,t.style="ui-form-wp-target"})}),_.each(s.post_job_actions,function(t){_.each(t.action_arguments,function(t){e(t,function(){})})})}),_.each(this.steps,function(e,s){if("tool"==e.step_type){var i=!0;v.default.visitInputs(e.inputs,function(s,a,n){var o=s.value&&"RuntimeValue"==s.value.__class__,r=-1!=["data","data_collection"].indexOf(s.type),l=n[s.data_ref];s.step_linked&&!t._isDataStep(s.step_linked)&&(i=!1),s.options&&(0==s.options.length&&!i||s.wp_linked)&&(s.is_workflow=!0),l&&(s.is_workflow=l.step_linked&&!t._isDataStep(l.step_linked)||s.wp_linked),(r||s.value&&"RuntimeValue"==s.value.__class__&&!s.step_linked)&&(e.collapsed=!1),o&&(s.value=s.default_value),s.flavor="workflow",o||r||"hidden"===s.type||s.wp_linked||(s.optional||!f.default.isEmpty(s.value)&&""!==s.value)&&(s.collapsible_value=s.value,s.collapsible_preview=!0)})}})},render:function(){var e=this;this.deferred.reset(),this._renderHeader(),this._renderMessage(),this._renderParameters(),this._renderHistory(),_.each(this.steps,function(t){e._renderStep(t)})},_renderHeader:function(){var e=this;this.execute_btn=new m.default.Button({icon:"fa-check",title:(0,h.default)("Run workflow"),cls:"btn btn-primary",onclick:function(){e._execute()}}),this.$header.addClass("ui-form-header").empty().append(new m.default.Label({title:"Workflow: "+this.model.get("name")}).$el).append(this.execute_btn.$el)},_renderMessage:function(){this.$message.empty(),this.model.get("has_upgrade_messages")&&this.$message.append(new m.default.Message({message:"Some tools in this workflow may have changed since it was last saved or some errors were found. The workflow may still run, but any new options will have default values. Please review the messages below to make a decision about whether the changes will affect your analysis.",status:"warning",persistent:!0,fade:!1}).$el);var e=this.model.get("step_version_changes");e&&e.length>0&&this.$message.append(new m.default.Message({message:"Some tools are being executed with different versions compared to those available when this workflow was last saved because the other versions are not or no longer available on this Galaxy instance. To upgrade your workflow and dismiss this message simply edit the workflow and re-save it.",status:"warning",persistent:!0,fade:!1}).$el)},_renderParameters:function(){var e=this;this.wp_form=null,_.isEmpty(this.wp_inputs)||(this.wp_form=new w.default({title:"<b>Workflow Parameters</b>",inputs:this.wp_inputs,cls:"ui-portlet-narrow",onchange:function(){_.each(e.wp_form.input_list,function(t,s){_.each(t.links,function(t){e._refreshStep(t)})})}}),this._append(this.$steps.empty(),this.wp_form.$el))},_renderHistory:function(){this.history_form=new w.default({cls:"ui-portlet-narrow",title:"<b>History Options</b>",inputs:[{type:"conditional",name:"new_history",test_param:{name:"check",label:"Send results to a new history",type:"boolean",value:"false",help:""},cases:[{value:"true",inputs:[{name:"name",label:"History name",type:"text",value:this.model.get("name")}]}]}]}),this._append(this.$steps,this.history_form.$el)},_renderStep:function(e){var t=this,s=null;this.deferred.execute(function(i){if(t.$steps.addClass("ui-steps"),"tool"==e.step_type)e.postchange=function(t,s){var i={tool_id:e.id,tool_version:e.version,inputs:$.extend(!0,{},s.data.create())};s.wait(!0),Galaxy.emit.debug("tool-form-composite::postchange()","Sending current state.",i),f.default.request({type:"POST",url:Galaxy.root+"api/tools/"+e.id+"/build",data:i,success:function(e){s.update(e),s.wait(!1),Galaxy.emit.debug("tool-form-composite::postchange()","Received new model.",e),t.resolve()},error:function(e){Galaxy.emit.debug("tool-form-composite::postchange()","Refresh request failed.",e),t.reject()}})},s=new g.default(e),e.post_job_actions&&e.post_job_actions.length&&s.portlet.append($("<div/>").addClass("ui-form-element-disabled").append($("<div/>").addClass("ui-form-title").html("<b>Job Post Actions</b>")).append($("<div/>").addClass("ui-form-preview").html(_.reduce(e.post_job_actions,function(e,t){return e+" "+t.short_str},""))));else{var a=-1!=["data_input","data_collection_input"].indexOf(e.step_type);_.each(e.inputs,function(e){e.flavor="module",e.hide_label=a}),s=new w.default(f.default.merge({title:e.fixed_title,onchange:function(){_.each(t.links[e.index],function(e){t._refreshStep(e)})},inputs:e.inputs&&e.inputs.length>0?e.inputs:[{type:"hidden",name:"No options available.",ignore:null}]},e))}t.forms[e.index]=s,t._append(t.$steps,s.$el),t._refresh(),e.needs_refresh&&t._refreshStep(e),s.portlet[t.show_progress?"disable":"enable"](),t.show_progress&&t.execute_btn.model.set({wait:!0,wait_text:"Preparing...",percentage:100*(e.index+1)/t.steps.length}),Galaxy.emit.debug("tool-form-composite::initialize()",e.index+" : Workflow step state ready.",e),setTimeout(function(){i.resolve()},0)})},_refreshStep:function(e){var t=this,s=this.forms[e.index];s?(_.each(t.parms[e.index],function(e,i){if(e.step_linked||e.wp_linked){var a=s.field_list[s.data.match(i)];if(a){var n=void 0;if(e.step_linked)n={values:[]},_.each(e.step_linked,function(e){if(t._isDataStep(e)){var s=t.forms[e.index].data.create().input;s&&_.each(s.values,function(e){n.values.push(e)})}}),!e.multiple&&n.values.length>0&&(n={values:[n.values[0]]});else if(e.wp_linked){n=e.value;for(var o,r=/\$\{(.+?)\}/g;o=r.exec(e.value);){var l=t.wp_form.field_list[t.wp_form.data.match(o[1])],p=l&&l.value();p&&(n=n.split(o[0]).join(p))}}void 0!==n&&a.value(n)}}}),s.trigger("change")):e.needs_refresh=!0},_refreshHistory:function(){var e=this,t=parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.model;this._refresh_history&&clearTimeout(this._refresh_history),t&&t.refresh().success(function(){0===t.numOfUnfinishedShownContents()&&(e._refresh_history=setTimeout(function(){e._refreshHistory()},t.UPDATE_DELAY))})},_execute:function(){var e=this;this.show_progress=!0,this._enabled(!1),this.deferred.execute(function(t){setTimeout(function(){t.resolve(),e._submit()},0)})},_submit:function(){var e=this,t=this.history_form.data.create(),s={new_history_name:t["new_history|name"]?t["new_history|name"]:null,history_id:t["new_history|name"]?null:this.model.get("history_id"),replacement_params:this.wp_form?this.wp_form.data.create():{},parameters:{},parameters_normalized:!0,batch:!0},i=!0;for(var a in this.forms){var n=this.forms[a],o=n.data.create(),r=e.steps[a],l=r.step_index;n.trigger("reset");for(var p in o){var u=o[p],d=n.data.match(p),c=(n.field_list[d],n.input_list[d]);if(!c.step_linked){if(!(i=this._isDataStep(r)?u&&u.values&&u.values.length>0:c.optional||c.is_workflow&&""!==u||!c.is_workflow&&null!==u)){n.highlight(d);break}s.parameters[l]=s.parameters[l]||{},s.parameters[l][p]=o[p]}}if(!i)break}i?(Galaxy.emit.debug("tool-form-composite::submit()","Validation complete.",s),f.default.request({type:"POST",url:Galaxy.root+"api/workflows/"+this.model.id+"/invocations",data:s,success:function(t){if(Galaxy.emit.debug("tool-form-composite::submit","Submission successful.",t),e.$el.children().hide(),e.$el.append(e._templateSuccess(t)),$.isArray(t)&&t.length>0){e.$el.append($("<div/>",{id:"webhook-view"}));new y.default.WebhookView({urlRoot:Galaxy.root+"api/webhooks/workflow",toolId:s.tool_id,toolVersion:s.tool_version})}e._refreshHistory()},error:function(t){Galaxy.emit.debug("tool-form-composite::submit","Submission failed.",t);var i=!1;if(t&&t.err_data)for(var a in e.forms){var n=e.forms[a],o=t.err_data[n.model.get("step_index")];if(o){var r=n.data.matchResponse(o);for(var l in r){n.highlight(l,r[l]),i=!0;break}}}i||e.modal.show({title:(0,h.default)("Workflow submission failed"),body:e._templateError(s,t&&t.err_msg),buttons:{Close:function(){e.modal.hide()}}})},complete:function(){e._enabled(!0)}})):(e._enabled(!0),Galaxy.emit.debug("tool-form-composite::submit()","Validation failed.",s))},_append:function(e,t){e.append("<p/>").append(t)},_enabled:function(e){this.execute_btn.model.set({wait:!e,wait_text:"Sending...",percentage:-1}),this.wp_form&&this.wp_form.portlet[e?"enable":"disable"](),this.history_form&&this.history_form.portlet[e?"enable":"disable"](),_.each(this.forms,function(t){t&&t.portlet[e?"enable":"disable"]()})},_isDataStep:function(e){for(var t=$.isArray(e)?e:[e],s=0;s<t.length;s++){var i=t[s];if(!i||!i.step_type||!i.step_type.startsWith("data"))return!1}return!0},_templateSuccess:function(e){return $.isArray(e)&&e.length>0?$("<div/>").addClass("donemessagelarge").append($("<p/>").html("Successfully invoked workflow <b>"+f.default.sanitize(this.model.get("name"))+"</b>"+(e.length>1?" <b>"+e.length+" times</b>":"")+".")).append($("<p/>").append("<b/>").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")):this._templateError(e,"Invalid success response. No invocations found.")},_templateError:function(e,t){return $("<div/>").addClass("errormessagelarge").append($("<p/>").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. "+(JSON.stringify(t)||""))).append($("<pre/>").text(JSON.stringify(e,null,4)))}});e.default={View:x}});
\ No newline at end of file
diff --git a/static/scripts/mvc/tool/tool-form.js b/static/scripts/mvc/tool/tool-form.js
index bf2de3a4b5c..3e929236604 100644
--- a/static/scripts/mvc/tool/tool-form.js
+++ b/static/scripts/mvc/tool/tool-form.js
@@ -1 +1 @@
-define("mvc/tool/tool-form",["exports","utils/utils","mvc/ui/ui-misc","mvc/ui/ui-modal","mvc/tool/tool-form-base","mvc/webhooks"],function(e,t,o,i,a,l){"use strict";function r(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var s=r(t),n=r(o),d=r(i),u=r(a),f=r(l),c=Backbone.View.extend({initialize:function(e){var t=this;this.modal=parent.Galaxy.modal||new d.default.View,this.form=new u.default(s.default.merge({listen_to_history:!0,always_refresh:!1,buildmodel:function(e,o){var i=o.model.attributes,a="",l={},r=i.job_id;r?a=Galaxy.root+"api/jobs/"+r+"/build_for_rerun":(a=Galaxy.root+"api/tools/"+i.id+"/build",(l=$.extend({},Galaxy.params)).tool_id&&delete l.tool_id),i.version&&(l.tool_version=i.version),s.default.get({url:a,data:l,success:function(i){i.display?(o.model.set(i),t._customize(o),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model ready.",i),e.resolve()):window.location=Galaxy.root},error:function(t,a){var l=t&&t.err_msg||"Uncaught error.";401==a?window.location=Galaxy.root+"user/login?"+$.param({redirect:Galaxy.root+"?tool_id="+i.id}):o.$el.is(":empty")?o.$el.prepend(new n.default.Message({message:l,status:"danger",persistent:!0,large:!0}).$el):Galaxy.modal&&Galaxy.modal.show({title:"Tool request failed",body:l,buttons:{Close:function(){Galaxy.modal.hide()}}}),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model request failed.",t),e.reject()}})},postchange:function(e,t){var o={tool_id:t.model.get("id"),tool_version:t.model.get("version"),inputs:$.extend(!0,{},t.data.create())};t.wait(!0),Galaxy.emit.debug("tool-form::postchange()","Sending current state.",o),s.default.request({type:"POST",url:Galaxy.root+"api/tools/"+t.model.get("id")+"/build",data:o,success:function(o){t.update(o),t.wait(!1),Galaxy.emit.debug("tool-form::postchange()","Received new model.",o),e.resolve()},error:function(t){Galaxy.emit.debug("tool-form::postchange()","Refresh request failed.",t),e.reject()}})}},e)),this.deferred=this.form.deferred,this.setElement("<div/>"),this.$el.append(this.form.$el)},_customize:function(e){var t=this,o=e.model.attributes,i=new n.default.Button({icon:"fa-check",tooltip:"Execute: "+o.name+" ("+o.version+")",title:"Execute",cls:"btn btn-primary ui-clear-float",wait_cls:"btn btn-info ui-clear-float",onclick:function(){i.wait(),e.portlet.disable(),t.submit(o,function(){i.unwait(),e.portlet.enable()})}});o.buttons={execute:i},o.job_id&&o.job_remap&&o.inputs.push({label:"Resume dependencies from this job",name:"rerun_remap_job_id",type:"select",display:"radio",ignore:"__ignore__",value:"__ignore__",options:[["Yes",o.job_id],["No","__ignore__"]],help:"The previous run of this tool failed and other tools were waiting for it to finish successfully. Use this option to resume those tools using the new output(s) of this tool run."})},submit:function(e,t){var o=this,i={tool_id:e.id,tool_version:e.version,inputs:this.form.data.create()};if(this.form.trigger("reset"),!o.validate(i))return Galaxy.emit.debug("tool-form::submit()","Submission canceled. Validation failed."),void(t&&t());if(e.action!==Galaxy.root+"tool_runner/index"){var a=$("<form/>").attr({action:e.action,method:e.method,enctype:e.enctype});return _.each(i.inputs,function(e,t){a.append($("<input/>").attr({name:t,value:e}))}),a.hide().appendTo("body").submit().remove(),void(t&&t())}Galaxy.emit.debug("tool-form::submit()","Validation complete.",i),s.default.request({type:"POST",url:Galaxy.root+"api/tools",data:i,success:function(e){if(t&&t(),o.$el.children().hide(),o.$el.append(o._templateSuccess(e)),e.jobs&&e.jobs.length>0){o.$el.append($("<div/>",{id:"webhook-view"}));new f.default.WebhookView({urlRoot:Galaxy.root+"api/webhooks/tool",toolId:i.tool_id})}parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents()},error:function(e){t&&t(),Galaxy.emit.debug("tool-form::submit","Submission failed.",e);var a=!1;if(e&&e.err_data){var l=o.form.data.matchResponse(e.err_data);for(var r in l){o.form.highlight(r,l[r]),a=!0;break}}a||o.modal.show({title:"Job submission failed",body:o._templateError(i,e&&e.err_msg),buttons:{Close:function(){o.modal.hide()}}})}})},validate:function(e){var t=e.inputs,o=-1,i=null;for(var a in t){var l=t[a],r=this.form.data.match(a),s=this.form.field_list[r],n=this.form.input_list[r];if(r&&n&&s){if(!n.optional&&null==l)return this.form.highlight(r),!1;if(l&&l.batch){var d=l.values.length,u=d>0&&l.values[0]&&l.values[0].src;if(u)if(null===i)i=u;else if(i!==u)return this.form.highlight(r,"Please select either dataset or dataset list fields for all batch mode fields."),!1;if(-1===o)o=d;else if(o!==d)return this.form.highlight(r,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+d+"</b> selection(s) while a previous field contains <b>"+o+"</b>."),!1}}else Galaxy.emit.debug("tool-form::validate()","Retrieving input objects failed.")}return!0},_templateSuccess:function(e){if(e.jobs&&e.jobs.length>0){var t=e.jobs.length,o=1==t?"1 job has":t+" jobs have",i=$("<div/>").addClass("donemessagelarge").append($("<p/>").text(o+" been successfully added to the queue - resulting in the following datasets:"));return _.each(e.outputs,function(e){i.append($("<p/>").addClass("messagerow").append($("<b/>").text(e.hid+": "+e.name)))}),i.append($("<p/>").append("<b/>").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")),i}return this._templateError(e,"Invalid success response. No jobs found.")},_templateError:function(e,t){return $("<div/>").addClass("errormessagelarge").append($("<p/>").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. "+(t||""))).append($("<pre/>").text(JSON.stringify(e,null,4)))}});e.default={View:c}});
\ No newline at end of file
+define("mvc/tool/tool-form",["exports","utils/localization","utils/utils","mvc/ui/ui-misc","mvc/ui/ui-modal","mvc/tool/tool-form-base","mvc/webhooks"],function(e,t,o,i,a,l,r){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var n=s(t),d=s(o),u=s(i),f=s(a),c=s(l),m=s(r),h=Backbone.View.extend({initialize:function(e){var t=this;this.modal=parent.Galaxy.modal||new f.default.View,this.form=new c.default(d.default.merge({listen_to_history:!0,always_refresh:!1,buildmodel:function(e,o){var i=o.model.attributes,a="",l={},r=i.job_id;r?a=Galaxy.root+"api/jobs/"+r+"/build_for_rerun":(a=Galaxy.root+"api/tools/"+i.id+"/build",(l=$.extend({},Galaxy.params)).tool_id&&delete l.tool_id),i.version&&(l.tool_version=i.version),d.default.get({url:a,data:l,success:function(i){i.display?(o.model.set(i),t._customize(o),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model ready.",i),e.resolve()):window.location=Galaxy.root},error:function(t,a){var l=t&&t.err_msg||"Uncaught error.";401==a?window.location=Galaxy.root+"user/login?"+$.param({redirect:Galaxy.root+"?tool_id="+i.id}):o.$el.is(":empty")?o.$el.prepend(new u.default.Message({message:l,status:"danger",persistent:!0,large:!0}).$el):Galaxy.modal&&Galaxy.modal.show({title:(0,n.default)("Tool request failed"),body:l,buttons:{Close:function(){Galaxy.modal.hide()}}}),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model request failed.",t),e.reject()}})},postchange:function(e,t){var o={tool_id:t.model.get("id"),tool_version:t.model.get("version"),inputs:$.extend(!0,{},t.data.create())};t.wait(!0),Galaxy.emit.debug("tool-form::postchange()","Sending current state.",o),d.default.request({type:"POST",url:Galaxy.root+"api/tools/"+t.model.get("id")+"/build",data:o,success:function(o){t.update(o),t.wait(!1),Galaxy.emit.debug("tool-form::postchange()","Received new model.",o),e.resolve()},error:function(t){Galaxy.emit.debug("tool-form::postchange()","Refresh request failed.",t),e.reject()}})}},e)),this.deferred=this.form.deferred,this.setElement("<div/>"),this.$el.append(this.form.$el)},_customize:function(e){var t=this,o=e.model.attributes,i=new u.default.Button({icon:"fa-check",tooltip:"Execute: "+o.name+" ("+o.version+")",title:(0,n.default)("Execute"),cls:"btn btn-primary ui-clear-float",wait_cls:"btn btn-info ui-clear-float",onclick:function(){i.wait(),e.portlet.disable(),t.submit(o,function(){i.unwait(),e.portlet.enable()})}});o.buttons={execute:i},o.job_id&&o.job_remap&&o.inputs.push({label:"Resume dependencies from this job",name:"rerun_remap_job_id",type:"select",display:"radio",ignore:"__ignore__",value:"__ignore__",options:[["Yes",o.job_id],["No","__ignore__"]],help:"The previous run of this tool failed and other tools were waiting for it to finish successfully. Use this option to resume those tools using the new output(s) of this tool run."})},submit:function(e,t){var o=this,i={tool_id:e.id,tool_version:e.version,inputs:this.form.data.create()};if(this.form.trigger("reset"),!o.validate(i))return Galaxy.emit.debug("tool-form::submit()","Submission canceled. Validation failed."),void(t&&t());if(e.action!==Galaxy.root+"tool_runner/index"){var a=$("<form/>").attr({action:e.action,method:e.method,enctype:e.enctype});return _.each(i.inputs,function(e,t){a.append($("<input/>").attr({name:t,value:e}))}),a.hide().appendTo("body").submit().remove(),void(t&&t())}Galaxy.emit.debug("tool-form::submit()","Validation complete.",i),d.default.request({type:"POST",url:Galaxy.root+"api/tools",data:i,success:function(e){if(t&&t(),o.$el.children().hide(),o.$el.append(o._templateSuccess(e)),e.jobs&&e.jobs.length>0){o.$el.append($("<div/>",{id:"webhook-view"}));new m.default.WebhookView({urlRoot:Galaxy.root+"api/webhooks/tool",toolId:i.tool_id})}parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents()},error:function(e){t&&t(),Galaxy.emit.debug("tool-form::submit","Submission failed.",e);var a=!1;if(e&&e.err_data){var l=o.form.data.matchResponse(e.err_data);for(var r in l){o.form.highlight(r,l[r]),a=!0;break}}a||o.modal.show({title:(0,n.default)("Job submission failed"),body:o._templateError(i,e&&e.err_msg),buttons:{Close:function(){o.modal.hide()}}})}})},validate:function(e){var t=e.inputs,o=-1,i=null;for(var a in t){var l=t[a],r=this.form.data.match(a),s=this.form.field_list[r],n=this.form.input_list[r];if(r&&n&&s){if(!n.optional&&null==l)return this.form.highlight(r),!1;if(l&&l.batch){var d=l.values.length,u=d>0&&l.values[0]&&l.values[0].src;if(u)if(null===i)i=u;else if(i!==u)return this.form.highlight(r,"Please select either dataset or dataset list fields for all batch mode fields."),!1;if(-1===o)o=d;else if(o!==d)return this.form.highlight(r,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+d+"</b> selection(s) while a previous field contains <b>"+o+"</b>."),!1}}else Galaxy.emit.debug("tool-form::validate()","Retrieving input objects failed.")}return!0},_templateSuccess:function(e){if(e.jobs&&e.jobs.length>0){var t=e.jobs.length,o=1==t?"1 job has":t+" jobs have",i=$("<div/>").addClass("donemessagelarge").append($("<p/>").text(o+" been successfully added to the queue - resulting in the following datasets:"));return _.each(e.outputs,function(e){i.append($("<p/>").addClass("messagerow").append($("<b/>").text(e.hid+": "+e.name)))}),i.append($("<p/>").append("<b/>").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")),i}return this._templateError(e,"Invalid success response. No jobs found.")},_templateError:function(e,t){return $("<div/>").addClass("errormessagelarge").append($("<p/>").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. "+(t||""))).append($("<pre/>").text(JSON.stringify(e,null,4)))}});e.default={View:h}});
\ No newline at end of file
diff --git a/static/scripts/mvc/toolshed/repo-status-view.js b/static/scripts/mvc/toolshed/repo-status-view.js
index 25dbcd79388..f94d47d3e4f 100644
--- a/static/scripts/mvc/toolshed/repo-status-view.js
+++ b/static/scripts/mvc/toolshed/repo-status-view.js
@@ -1 +1 @@
-define("mvc/toolshed/repo-status-view",["exports","mvc/toolshed/toolshed-model","mvc/toolshed/util"],function(e,t,o){"use strict";function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var s=i(t),r=i(o),a=Backbone.View.extend({el:"#center",initialize:function(e){this.options=_.defaults(this.options||[{}],e,this.defaults),this.model=new s.default.RepoStatus,this.listenTo(this.model,"sync",this.render),this.model.url+="?repositories="+this.options.repositories.join("|"),this.model.fetch(),this.timer=setInterval(function(e){var t=["installed","error"],o=!0;_.some(e.model.models,function(e){repo_id=e.get("id");var i=e.get("status").toLowerCase();if(-1===t.indexOf(i))return o=!1,!0}),o?clearInterval(e.timer):e.model.fetch()},2e3,this)},close:function(){clearInterval(this.timer)},render:function(e){this.options=_.extend(this.options,e);var t=this.templateRepoStatus;this.$el.html(t({title:"Repository Status",repositories:this.model.models,queue:r.default.queueLength()})),$("#center").css("overflow","auto"),this.bindEvents()},bindEvents:function(){},reDraw:function(e){this.$el.empty(),this.initialize(e)},templateRepoStatus:_.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner"><%= title %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<style type="text/css">',".state-color-new,",".state-color-deactivated,",".state-color-uninstalled { border-color:#bfbfbf; background:#eee }",".state-color-cloning,",".state-color-setting-tool-versions,",".state-color-installing-repository-dependencies,",".state-color-installing-tool-dependencies,",".state-color-loading-proprietary-datatypes { border-color:#AAAA66; background:#FFFFCC }",".state-color-installed { border-color:#20b520; background:#b0f1b0 }",".state-color-error { border-color:#dd1b15; background:#f9c7c5 }","</style>",'<table id="grid-table" class="grid">','<thead id="grid-table-header">',"<tr>",'<th id="null-header">Name<span class="sort-arrow"></span></th>','<th id="null-header">Description<span class="sort-arrow"></span></th>','<th id="null-header">Owner<span class="sort-arrow"></span></th>','<th id="null-header">Revision<span class="sort-arrow"></span></th>','<th id="null-header">Installation Status<span class="sort-arrow"></span></th>',"</tr>","</thead>",'<tbody id="grid-table-body">',"<% _.each(repositories, function(repository) { %>","<tr>","<td>",'<div id="" class="">','<label id="repo-name-<%= repository.get("id") %>" for="<%= repository.get("id") %>">','<%= repository.get("name") %>',"</label>","</div>","</td>","<td>",'<div id="" class="">','<label id="repo-desc-<%= repository.get("id") %>" for="<%= repository.get("id") %>">','<%= repository.get("description") %>',"</label>","</div>","</td>","<td>",'<div id="" class="">','<label id="repo-user-<%= repository.get("id") %>" for="<%= repository.get("id") %>">','<%= repository.get("owner") %>',"</label>","</div>","</td>","<td>",'<div id="" class="">','<label id="repo-changeset-<%= repository.get("id") %>" for="<%= repository.get("id") %>">','<%= repository.get("changeset_revision") %>',"</label>","</div>","</td>","<td>",'<div id="" class="">','<label id="RepositoryStatus-<%= repository.get("id") %>" for="<%= repository.get("id") %>">','<div class="repo-status count-box state-color-<%= repository.get("status").toLowerCase().replace(/ /g, "-") %>" id="RepositoryStatus-<%= repository.get("id") %>">','<%= repository.get("status") %>',"</div>","</label>","</div>","</td>","</tr>","<% }); %>","</tbody>",'<tfoot id="grid-table-footer"></tfoot>',"</table>"].join(""))});e.default={RepoStatus:a}});
\ No newline at end of file
+define("mvc/toolshed/repo-status-view",["exports","utils/localization","mvc/toolshed/toolshed-model","mvc/toolshed/util"],function(e,t,o,i){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var r=s(t),a=s(o),l=s(i),d=Backbone.View.extend({el:"#center",initialize:function(e){this.options=_.defaults(this.options||[{}],e,this.defaults),this.model=new a.default.RepoStatus,this.listenTo(this.model,"sync",this.render),this.model.url+="?repositories="+this.options.repositories.join("|"),this.model.fetch(),this.timer=setInterval(function(e){var t=["installed","error"],o=!0;_.some(e.model.models,function(e){repo_id=e.get("id");var i=e.get("status").toLowerCase();if(-1===t.indexOf(i))return o=!1,!0}),o?clearInterval(e.timer):e.model.fetch()},2e3,this)},close:function(){clearInterval(this.timer)},render:function(e){this.options=_.extend(this.options,e);var t=this.templateRepoStatus;this.$el.html(t({title:(0,r.default)("Repository Status"),repositories:this.model.models,queue:l.default.queueLength()})),$("#center").css("overflow","auto"),this.bindEvents()},bindEvents:function(){},reDraw:function(e){this.$el.empty(),this.initialize(e)},templateRepoStatus:_.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner"><%= title %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<style type="text/css">',".state-color-new,",".state-color-deactivated,",".state-color-uninstalled { border-color:#bfbfbf; background:#eee }",".state-color-cloning,",".state-color-setting-tool-versions,",".state-color-installing-repository-dependencies,",".state-color-installing-tool-dependencies,",".state-color-loading-proprietary-datatypes { border-color:#AAAA66; background:#FFFFCC }",".state-color-installed { border-color:#20b520; background:#b0f1b0 }",".state-color-error { border-color:#dd1b15; background:#f9c7c5 }","</style>",'<table id="grid-table" class="grid">','<thead id="grid-table-header">',"<tr>",'<th id="null-header">Name<span class="sort-arrow"></span></th>','<th id="null-header">Description<span class="sort-arrow"></span></th>','<th id="null-header">Owner<span class="sort-arrow"></span></th>','<th id="null-header">Revision<span class="sort-arrow"></span></th>','<th id="null-header">Installation Status<span class="sort-arrow"></span></th>',"</tr>","</thead>",'<tbody id="grid-table-body">',"<% _.each(repositories, function(repository) { %>","<tr>","<td>",'<div id="" class="">','<label id="repo-name-<%= repository.get("id") %>" for="<%= repository.get("id") %>">','<%= repository.get("name") %>',"</label>","</div>","</td>","<td>",'<div id="" class="">','<label id="repo-desc-<%= repository.get("id") %>" for="<%= repository.get("id") %>">','<%= repository.get("description") %>',"</label>","</div>","</td>","<td>",'<div id="" class="">','<label id="repo-user-<%= repository.get("id") %>" for="<%= repository.get("id") %>">','<%= repository.get("owner") %>',"</label>","</div>","</td>","<td>",'<div id="" class="">','<label id="repo-changeset-<%= repository.get("id") %>" for="<%= repository.get("id") %>">','<%= repository.get("changeset_revision") %>',"</label>","</div>","</td>","<td>",'<div id="" class="">','<label id="RepositoryStatus-<%= repository.get("id") %>" for="<%= repository.get("id") %>">','<div class="repo-status count-box state-color-<%= repository.get("status").toLowerCase().replace(/ /g, "-") %>" id="RepositoryStatus-<%= repository.get("id") %>">','<%= repository.get("status") %>',"</div>","</label>","</div>","</td>","</tr>","<% }); %>","</tbody>",'<tfoot id="grid-table-footer"></tfoot>',"</table>"].join(""))});e.default={RepoStatus:d}});
\ No newline at end of file
diff --git a/static/scripts/mvc/toolshed/repository-queue-view.js b/static/scripts/mvc/toolshed/repository-queue-view.js
index 6ba9cbe86f9..a11c9c18bb9 100644
--- a/static/scripts/mvc/toolshed/repository-queue-view.js
+++ b/static/scripts/mvc/toolshed/repository-queue-view.js
@@ -1 +1 @@
-define("mvc/toolshed/repository-queue-view",["exports","mvc/toolshed/toolshed-model","mvc/toolshed/util"],function(e,t,o){"use strict";function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(t),s=i(o),a=Backbone.View.extend({el:"#center",defaults:[{}],initialize:function(e){var t=this;this.model=new r.default.RepoQueue,this.listenTo(this.model,"sync",this.render),this.model.fetch(),t.render()},render:function(e){var t=this,o=t.templateRepoQueue,i=t.model.models;t.$el.html(o({title:"Repository Installation Queue",repositories:i,queue:s.default.queueLength()})),$("#center").css("overflow","auto"),t.bindEvents()},bindEvents:function(){var e=this;$(".install_one").on("click",function(){var t=e.loadFromQueue($(this).attr("data-repokey"));e.installFromQueue(t,$(this).attr("data-repokey"))}),$(".remove_one").on("click",function(){var e=$(this).attr("data-repokey"),t=JSON.parse(localStorage.repositories);if(t.hasOwnProperty(e)){var o=t[e].repository.id;delete t[e],$("#queued_repository_"+o).remove()}localStorage.repositories=JSON.stringify(t)}),$("#clear_queue").on("click",function(){localStorage.repositories="{}"}),$("#from_workflow").on("click",function(){Backbone.history.navigate("workflows",{trigger:!0,replace:!0})})},installFromQueue:function(e,t){var o=Object();o.install_tool_dependencies=e.install_tool_dependencies,o.install_repository_dependencies=e.install_repository_dependencies,o.install_resolver_dependencies=e.install_resolver_dependencies,o.tool_panel_section=e.tool_panel_section,o.shed_tool_conf=e.shed_tool_conf,o.repositories=JSON.stringify([[e.repository.id,e.changeset_revision]]),o.tool_shed_repository_ids=JSON.stringify([e.repository.id]),o.tool_shed_url=t.split("|")[0],o.changeset=e.changeset_revision;var i=Galaxy.root+"api/tool_shed_repositories/install?async=True";if($("#queued_repository_"+e.repository.id).remove(),localStorage.repositories){void 0===t&&(t=s.default.queueKey(e));var r=JSON.parse(localStorage.repositories);r.hasOwnProperty(t)&&(delete r[t],localStorage.repositories=JSON.stringify(r))}$.post(i,o,function(e){var t=JSON.parse(e),o="status/r/"+t.repositories.join("|");$.post(Galaxy.root+"admin_toolshed/install_repositories",t,function(e){console.log("Initializing repository installation succeeded")}),Backbone.history.navigate(o,{trigger:!0,replace:!0})})},loadFromQueue:function(e){var t=JSON.parse(localStorage.repositories);if(t.hasOwnProperty(e))return t[e]},reDraw:function(e){this.$el.empty(),this.initialize(e),this.model.fetch(),this.render(e)},templateRepoQueue:_.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner"><%= title %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<div class="tab-pane" id="panel_header" id="repository_queue">','<table id="queued_repositories" class="grid" border="0" cellpadding="2" cellspacing="2" width="100%">','<thead id="grid-table-header">',"<tr>",'<th class="datasetRow">Name</th>','<th class="datasetRow">Owner</th>','<th class="datasetRow">Revision</th>','<th class="datasetRow">ToolShed</th>','<th class="datasetRow">Install</th>','<th class="datasetRow"><input class="btn btn-primary" type="submit" id="clear_queue" name="clear_queue" value="Clear queue" /></th>',"</tr>","</thead>","<tbody>","<% _.each(repositories, function(repository) { %>",'<tr id="queued_repository_<%= repository.get("id") %>">','<td class="datasetRow"><%= repository.get("repository").name %></td>','<td class="datasetRow"><%= repository.get("repository").owner %></td>','<td class="datasetRow"><%= repository.get("changeset_revision") %></td>','<td class="datasetRow"><%= repository.get("tool_shed_url") %></td>','<td class="datasetRow">','<input class="btn btn-primary install_one" data-repokey="<%= repository.get("queue_key") %>" type="submit" id="install_repository_<%= repository.get("id") %>" name="install_repository" value="Install now" />',"</td>",'<td class="datasetRow">','<input class="btn btn-primary remove_one" data-repokey="<%= repository.get("queue_key") %>" type="submit" id="unqueue_repository_<%= repository.get("id") %>" name="unqueue_repository" value="Remove from queue" />',"</td>","</tr>","<% }); %>","</tbody>","</table>",'<input type="button" class="btn btn-primary" id="from_workflow" value="Add from workflow" />',"</div>"].join(""))});e.default={RepoQueueView:a}});
\ No newline at end of file
+define("mvc/toolshed/repository-queue-view",["exports","utils/localization","mvc/toolshed/toolshed-model","mvc/toolshed/util"],function(e,t,o,i){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var r=s(t),a=s(o),l=s(i),n=Backbone.View.extend({el:"#center",defaults:[{}],initialize:function(e){var t=this;this.model=new a.default.RepoQueue,this.listenTo(this.model,"sync",this.render),this.model.fetch(),t.render()},render:function(e){var t=this,o=t.templateRepoQueue,i=t.model.models;t.$el.html(o({title:(0,r.default)("Repository Installation Queue"),repositories:i,queue:l.default.queueLength()})),$("#center").css("overflow","auto"),t.bindEvents()},bindEvents:function(){var e=this;$(".install_one").on("click",function(){var t=e.loadFromQueue($(this).attr("data-repokey"));e.installFromQueue(t,$(this).attr("data-repokey"))}),$(".remove_one").on("click",function(){var e=$(this).attr("data-repokey"),t=JSON.parse(localStorage.repositories);if(t.hasOwnProperty(e)){var o=t[e].repository.id;delete t[e],$("#queued_repository_"+o).remove()}localStorage.repositories=JSON.stringify(t)}),$("#clear_queue").on("click",function(){localStorage.repositories="{}"}),$("#from_workflow").on("click",function(){Backbone.history.navigate("workflows",{trigger:!0,replace:!0})})},installFromQueue:function(e,t){var o=Object();o.install_tool_dependencies=e.install_tool_dependencies,o.install_repository_dependencies=e.install_repository_dependencies,o.install_resolver_dependencies=e.install_resolver_dependencies,o.tool_panel_section=e.tool_panel_section,o.shed_tool_conf=e.shed_tool_conf,o.repositories=JSON.stringify([[e.repository.id,e.changeset_revision]]),o.tool_shed_repository_ids=JSON.stringify([e.repository.id]),o.tool_shed_url=t.split("|")[0],o.changeset=e.changeset_revision;var i=Galaxy.root+"api/tool_shed_repositories/install?async=True";if($("#queued_repository_"+e.repository.id).remove(),localStorage.repositories){void 0===t&&(t=l.default.queueKey(e));var s=JSON.parse(localStorage.repositories);s.hasOwnProperty(t)&&(delete s[t],localStorage.repositories=JSON.stringify(s))}$.post(i,o,function(e){var t=JSON.parse(e),o="status/r/"+t.repositories.join("|");$.post(Galaxy.root+"admin_toolshed/install_repositories",t,function(e){console.log("Initializing repository installation succeeded")}),Backbone.history.navigate(o,{trigger:!0,replace:!0})})},loadFromQueue:function(e){var t=JSON.parse(localStorage.repositories);if(t.hasOwnProperty(e))return t[e]},reDraw:function(e){this.$el.empty(),this.initialize(e),this.model.fetch(),this.render(e)},templateRepoQueue:_.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner"><%= title %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<div class="tab-pane" id="panel_header" id="repository_queue">','<table id="queued_repositories" class="grid" border="0" cellpadding="2" cellspacing="2" width="100%">','<thead id="grid-table-header">',"<tr>",'<th class="datasetRow">Name</th>','<th class="datasetRow">Owner</th>','<th class="datasetRow">Revision</th>','<th class="datasetRow">ToolShed</th>','<th class="datasetRow">Install</th>','<th class="datasetRow"><input class="btn btn-primary" type="submit" id="clear_queue" name="clear_queue" value="Clear queue" /></th>',"</tr>","</thead>","<tbody>","<% _.each(repositories, function(repository) { %>",'<tr id="queued_repository_<%= repository.get("id") %>">','<td class="datasetRow"><%= repository.get("repository").name %></td>','<td class="datasetRow"><%= repository.get("repository").owner %></td>','<td class="datasetRow"><%= repository.get("changeset_revision") %></td>','<td class="datasetRow"><%= repository.get("tool_shed_url") %></td>','<td class="datasetRow">','<input class="btn btn-primary install_one" data-repokey="<%= repository.get("queue_key") %>" type="submit" id="install_repository_<%= repository.get("id") %>" name="install_repository" value="Install now" />',"</td>",'<td class="datasetRow">','<input class="btn btn-primary remove_one" data-repokey="<%= repository.get("queue_key") %>" type="submit" id="unqueue_repository_<%= repository.get("id") %>" name="unqueue_repository" value="Remove from queue" />',"</td>","</tr>","<% }); %>","</tbody>","</table>",'<input type="button" class="btn btn-primary" id="from_workflow" value="Add from workflow" />',"</div>"].join(""))});e.default={RepoQueueView:n}});
\ No newline at end of file
diff --git a/static/scripts/mvc/toolshed/shed-list-view.js b/static/scripts/mvc/toolshed/shed-list-view.js
index 792a177ba85..7107562d49f 100644
--- a/static/scripts/mvc/toolshed/shed-list-view.js
+++ b/static/scripts/mvc/toolshed/shed-list-view.js
@@ -1 +1 @@
-define("mvc/toolshed/shed-list-view",["exports","mvc/toolshed/toolshed-model","mvc/toolshed/util"],function(e,t,s){"use strict";function i(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var l=i(t),d=i(s),o=Backbone.View.extend({defaults:{tool_sheds:[{url:"https://toolshed.g2.bx.psu.edu/",name:"Galaxy Main Tool Shed"}]},initialize:function(e){this.options=_.defaults(this.options||{},this.defaults),this.model=new l.default.ShedsCollection,this.listenTo(this.model,"sync",this.render),this.model.fetch()},el:"#center",render:function(e){this.options=_.defaults(this.options||{},e,this.defaults);var t=this.templateToolshedList;this.$el.html(t({title:"Configured Galaxy Tool Sheds",tool_sheds:this.model.models,queue:d.default.queueLength()}))},reDraw:function(e){this.$el.empty(),this.render(e)},templateToolshedList:_.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner"><%= title %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<div class="unified-panel-body" id="list_toolsheds">','<div class="form-row">','<table class="grid">',"<% _.each(tool_sheds, function(shed) { %>",'<tr class="libraryTitle">',"<td>",'<div style="float: left; margin-left: 1px;" class="menubutton split">','<a class="view-info shed-selector" href="#/categories/s/<%= shed.get("url") %>"><%= shed.get("name") %></a>',"</div>","</td>","</tr>","<% }); %>","</table>","</div>",'<div style="clear: both"></div>',"</div>"].join(""))});e.default={ShedListView:o}});
\ No newline at end of file
+define("mvc/toolshed/shed-list-view",["exports","utils/localization","mvc/toolshed/toolshed-model","mvc/toolshed/util"],function(e,t,s,i){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var d=l(t),o=l(s),a=l(i),n=Backbone.View.extend({defaults:{tool_sheds:[{url:"https://toolshed.g2.bx.psu.edu/",name:"Galaxy Main Tool Shed"}]},initialize:function(e){this.options=_.defaults(this.options||{},this.defaults),this.model=new o.default.ShedsCollection,this.listenTo(this.model,"sync",this.render),this.model.fetch()},el:"#center",render:function(e){this.options=_.defaults(this.options||{},e,this.defaults);var t=this.templateToolshedList;this.$el.html(t({title:(0,d.default)("Configured Galaxy Tool Sheds"),tool_sheds:this.model.models,queue:a.default.queueLength()}))},reDraw:function(e){this.$el.empty(),this.render(e)},templateToolshedList:_.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner"><%= title %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<div class="unified-panel-body" id="list_toolsheds">','<div class="form-row">','<table class="grid">',"<% _.each(tool_sheds, function(shed) { %>",'<tr class="libraryTitle">',"<td>",'<div style="float: left; margin-left: 1px;" class="menubutton split">','<a class="view-info shed-selector" href="#/categories/s/<%= shed.get("url") %>"><%= shed.get("name") %></a>',"</div>","</td>","</tr>","<% }); %>","</table>","</div>",'<div style="clear: both"></div>',"</div>"].join(""))});e.default={ShedListView:n}});
\ No newline at end of file
diff --git a/static/scripts/mvc/toolshed/workflows-view.js b/static/scripts/mvc/toolshed/workflows-view.js
index 5d809ffb083..f91941901c8 100644
--- a/static/scripts/mvc/toolshed/workflows-view.js
+++ b/static/scripts/mvc/toolshed/workflows-view.js
@@ -1 +1 @@
-define("mvc/toolshed/workflows-view",["exports","mvc/toolshed/toolshed-model","mvc/toolshed/util"],function(o,t,e){"use strict";function s(o){return o&&o.__esModule?o:{default:o}}Object.defineProperty(o,"__esModule",{value:!0});var l=s(t),a=s(e),r=Backbone.View.extend({el:"#center",defaults:[{}],initialize:function(o){var t=this;this.model=new l.default.WorkflowTools,this.listenTo(this.model,"sync",this.render),this.model.fetch(),t.render()},render:function(o){var t=this,e=t.templateWorkflows,s=t.model.models;t.$el.html(e({title:"Workflows Missing Tools",workflows:s,queue:a.default.queueLength()})),$("#center").css("overflow","auto"),t.bindEvents()},bindEvents:function(){var o,t=this;$(".show_wf_repo").on("click",function(){var t=$(this).attr("data-toolids"),e=$(this).attr("data-shed"),s=Galaxy.root+"api/tool_shed/repository",l={tool_ids:t};$.get(s,l,function(t){o=t.repository.id;var s="repository/s/"+e.replace(/:/g,"%3a").replace(/\//g,"%2f")+"/r/"+t.repository.id;Backbone.history.navigate(s,{trigger:!0,replace:!0})})}),$(".queue_wf_repo").on("click",function(){var t=$(this),e=t.attr("data-toolids"),s=t.attr("data-shed"),l=Galaxy.root+"api/tool_shed/repository",r={tool_ids:e};$.get(l,r,function(e){o=e.repository.id,r={tool_shed_url:s,repository_id:o},$.get(l,r,function(o){var e=Object.keys(o.repository.metadata)[0],l=o.repository.metadata[e];l.tool_shed_url=s,a.default.addToQueue(l),t.remove()})})}),$("#from_workflow").on("click",t.loadWorkflows)},reDraw:function(o){this.$el.empty(),this.initialize(o)},templateWorkflows:_.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner"><%= title %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<style type="text/css">',".workflow_names, .workflow_tools { list-style-type: none; } ul.workflow_tools, ul.workflow_names {  padding-left: 0px; }","</style>",'<table id="workflows_missing_tools" class="grid" border="0" cellpadding="2" cellspacing="2" width="100%">','<thead id="grid-table-header">',"<tr>",'<th class="datasetRow">Workflows</th>','<th class="datasetRow">Tool IDs</th>','<th class="datasetRow">Shed</th>','<th class="datasetRow">Name</th>','<th class="datasetRow">Owner</th>','<th class="datasetRow">Actions</th>',"</tr>","</thead>","<tbody>","<% _.each(workflows, function(workflow) { %>","<tr>",'<td class="datasetRow">','<ul class="workflow_names">','<% _.each(workflow.get("workflows"), function(name) { %>','<li class="workflow_names"><%= name %></li>',"<% }); %>","</ul>","</td>",'<td class="datasetRow">','<ul class="workflow_tools">','<% _.each(workflow.get("tools"), function(tool) { %>','<li class="workflow_tools"><%= tool %></li>',"<% }); %>","</ul>","</td>",'<td class="datasetRow"><%= workflow.get("shed") %></td>','<td class="datasetRow"><%= workflow.get("repository") %></td>','<td class="datasetRow"><%= workflow.get("owner") %></td>','<td class="datasetRow">','<ul class="workflow_tools">','<li class="workflow_tools">','<input type="button" class="show_wf_repo btn btn-primary" data-shed="<%= workflow.get("shed") %>" data-owner="<%= workflow.get("owner") %>" data-repo="<%= workflow.get("repository") %>" data-toolids="<%= workflow.get("tools").join(",") %>" value="Show Repository" /></li>',"</ul>","</td>","</tr>","<% }); %>","</ul>","</div>"].join(""))});o.default={Workflows:r}});
\ No newline at end of file
+define("mvc/toolshed/workflows-view",["exports","utils/localization","mvc/toolshed/toolshed-model","mvc/toolshed/util"],function(o,t,e,s){"use strict";function l(o){return o&&o.__esModule?o:{default:o}}Object.defineProperty(o,"__esModule",{value:!0});var a=l(t),r=l(e),i=l(s),d=Backbone.View.extend({el:"#center",defaults:[{}],initialize:function(o){var t=this;this.model=new r.default.WorkflowTools,this.listenTo(this.model,"sync",this.render),this.model.fetch(),t.render()},render:function(o){var t=this,e=t.templateWorkflows,s=t.model.models;t.$el.html(e({title:(0,a.default)("Workflows Missing Tools"),workflows:s,queue:i.default.queueLength()})),$("#center").css("overflow","auto"),t.bindEvents()},bindEvents:function(){var o,t=this;$(".show_wf_repo").on("click",function(){var t=$(this).attr("data-toolids"),e=$(this).attr("data-shed"),s=Galaxy.root+"api/tool_shed/repository",l={tool_ids:t};$.get(s,l,function(t){o=t.repository.id;var s="repository/s/"+e.replace(/:/g,"%3a").replace(/\//g,"%2f")+"/r/"+t.repository.id;Backbone.history.navigate(s,{trigger:!0,replace:!0})})}),$(".queue_wf_repo").on("click",function(){var t=$(this),e=t.attr("data-toolids"),s=t.attr("data-shed"),l=Galaxy.root+"api/tool_shed/repository",a={tool_ids:e};$.get(l,a,function(e){o=e.repository.id,a={tool_shed_url:s,repository_id:o},$.get(l,a,function(o){var e=Object.keys(o.repository.metadata)[0],l=o.repository.metadata[e];l.tool_shed_url=s,i.default.addToQueue(l),t.remove()})})}),$("#from_workflow").on("click",t.loadWorkflows)},reDraw:function(o){this.$el.empty(),this.initialize(o)},templateWorkflows:_.template(['<div class="unified-panel-header" id="panel_header" unselectable="on">','<div class="unified-panel-header-inner"><%= title %></div>','<div class="unified-panel-header-inner" style="position: absolute; right: 5px; top: 0px;"><a href="#/queue">Repository Queue (<%= queue %>)</a></div>',"</div>",'<style type="text/css">',".workflow_names, .workflow_tools { list-style-type: none; } ul.workflow_tools, ul.workflow_names {  padding-left: 0px; }","</style>",'<table id="workflows_missing_tools" class="grid" border="0" cellpadding="2" cellspacing="2" width="100%">','<thead id="grid-table-header">',"<tr>",'<th class="datasetRow">Workflows</th>','<th class="datasetRow">Tool IDs</th>','<th class="datasetRow">Shed</th>','<th class="datasetRow">Name</th>','<th class="datasetRow">Owner</th>','<th class="datasetRow">Actions</th>',"</tr>","</thead>","<tbody>","<% _.each(workflows, function(workflow) { %>","<tr>",'<td class="datasetRow">','<ul class="workflow_names">','<% _.each(workflow.get("workflows"), function(name) { %>','<li class="workflow_names"><%= name %></li>',"<% }); %>","</ul>","</td>",'<td class="datasetRow">','<ul class="workflow_tools">','<% _.each(workflow.get("tools"), function(tool) { %>','<li class="workflow_tools"><%= tool %></li>',"<% }); %>","</ul>","</td>",'<td class="datasetRow"><%= workflow.get("shed") %></td>','<td class="datasetRow"><%= workflow.get("repository") %></td>','<td class="datasetRow"><%= workflow.get("owner") %></td>','<td class="datasetRow">','<ul class="workflow_tools">','<li class="workflow_tools">','<input type="button" class="show_wf_repo btn btn-primary" data-shed="<%= workflow.get("shed") %>" data-owner="<%= workflow.get("owner") %>" data-repo="<%= workflow.get("repository") %>" data-toolids="<%= workflow.get("tools").join(",") %>" value="Show Repository" /></li>',"</ul>","</td>","</tr>","<% }); %>","</ul>","</div>"].join(""))});o.default={Workflows:d}});
\ No newline at end of file
diff --git a/static/scripts/mvc/tours.js b/static/scripts/mvc/tours.js
index d57a03b5a83..57ea8931e6b 100644
--- a/static/scripts/mvc/tours.js
+++ b/static/scripts/mvc/tours.js
@@ -1 +1 @@
-define("mvc/tours",["exports","libs/bootstrap-tour"],function(t,e){"use strict";Object.defineProperty(t,"__esModule",{value:!0});!function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var o in t)Object.prototype.hasOwnProperty.call(t,o)&&(e[o]=t[o]);e.default=t}(e);var o="undefined"==typeof Galaxy?"/":Galaxy.root,n={storage:window.sessionStorage,onEnd:function(){sessionStorage.removeItem("activeGalaxyTour")},delay:150,orphan:!0},a=function(t){return _.each(t.steps,function(t){t.preclick&&(t.onShow=function(){_.each(t.preclick,function(t){$(t).click()})}),t.postclick&&(t.onHide=function(){_.each(t.postclick,function(t){$(t).click()})}),t.textinsert&&(t.onShown=function(){$(t.element).val(t.textinsert).trigger("change")})}),t},r=Backbone.Model.extend({urlRoot:o+"api/tours"}),s=Backbone.Collection.extend({url:o+"api/tours",model:r}),i=function(t){var e=o+"api/tours/"+t;$.getJSON(e,function(t){var e=a(t);sessionStorage.setItem("activeGalaxyTour",JSON.stringify(t));var o=new Tour(_.extend({steps:e.steps},n));o.init(),o.goTo(0),o.restart()})},u=Backbone.View.extend({title:"Tours",initialize:function(){var t=this;this.setElement("<div/>"),this.model=new s,this.model.fetch({success:function(){t.render()},error:function(){console.error("Failed to fetch tours.")}})},render:function(){var t=_.template('<h2>Galaxy Tours</h2>\n<p>This page presents a list of interactive tours available on this Galaxy server.\nSelect any tour to get started (and remember, you can click \'End Tour\' at any time).</p>\n\n<div class="col-12 btn-group" role="group" aria-label="Tag selector">\n    <% _.each(tourtagorder, function(tag) { %>\n    <button class="btn btn-primary tag-selector-button" tag-selector-button="<%- tag %>">\n        <%- tag %>\n    </button>\n    <% }); %>\n</div>\n\n<% _.each(tourtagorder, function(tourtagkey) { %>\n<div tag="<%- tourtagkey %>" style="display: block;">\n    <% var tourtag = tourtags[tourtagkey]; %>\n    <h4>\n        <%- tourtag.name %>\n    </h4>\n    <ul class="list-group">\n    <% _.each(tourtag.tours, function(tour) { %>\n        <li class="list-group-item">\n            <a href="/tours/<%- tour.id %>" class="tourItem" data-tour.id=<%- tour.id %>>\n                <%- tour.name || tour.id %>\n            </a>\n             - <%- tour.attributes.description || "No description given." %>\n             <% _.each(tour.attributes.tags, function(tag) { %>\n                <span class="label label-primary sm-label-pad">\n                    <%- tag.charAt(0).toUpperCase() + tag.slice(1) %>\n                </span>\n             <% }); %>\n        </li>\n    <% }); %>\n    </ul>\n</div>\n<% }); %>'),e={};_.each(this.model.models,function(t){null===t.attributes.tags?(void 0===e.Untagged&&(e.Untagged={name:"Untagged",tours:[]}),e.Untagged.tours.push(t)):_.each(t.attributes.tags,function(o){o=o.charAt(0).toUpperCase()+o.slice(1),void 0===e[o]&&(e[o]={name:o,tours:[]}),e[o].tours.push(t)})});var o=Object.keys(e).sort();this.$el.html(t({tours:this.model.models,tourtags:e,tourtagorder:o})).on("click",".tourItem",function(t){t.preventDefault(),i($(this).data("tour.id"))}).on("click",".tag-selector-button",function(t){var e=$(t.target),o="block",n=e.attr("tag-selector-button");e.toggleClass("btn-primary"),e.toggleClass("btn-secondary"),e.hasClass("btn-secondary")&&(o="none"),$("div[tag='"+n+"']").css({display:o})})}});t.default={ToursView:u,hooked_tour_from_data:a,tour_opts:n,giveTour:i}});
\ No newline at end of file
+define("mvc/tours",["exports","utils/localization","libs/bootstrap-tour"],function(t,e,o){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=function(t){return t&&t.__esModule?t:{default:t}}(e),a=(function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var o in t)Object.prototype.hasOwnProperty.call(t,o)&&(e[o]=t[o]);e.default=t}(o),"undefined"==typeof Galaxy?"/":Galaxy.root),r={storage:window.sessionStorage,onEnd:function(){sessionStorage.removeItem("activeGalaxyTour")},delay:150,orphan:!0},s=function(t){return _.each(t.steps,function(t){t.preclick&&(t.onShow=function(){_.each(t.preclick,function(t){$(t).click()})}),t.postclick&&(t.onHide=function(){_.each(t.postclick,function(t){$(t).click()})}),t.textinsert&&(t.onShown=function(){$(t.element).val(t.textinsert).trigger("change")})}),t},i=Backbone.Model.extend({urlRoot:a+"api/tours"}),u=Backbone.Collection.extend({url:a+"api/tours",model:i}),l=function(t){var e=a+"api/tours/"+t;$.getJSON(e,function(t){var e=s(t);sessionStorage.setItem("activeGalaxyTour",JSON.stringify(t));var o=new Tour(_.extend({steps:e.steps},r));o.init(),o.goTo(0),o.restart()})},c=Backbone.View.extend({title:(0,n.default)("Tours"),initialize:function(){var t=this;this.setElement("<div/>"),this.model=new u,this.model.fetch({success:function(){t.render()},error:function(){console.error("Failed to fetch tours.")}})},render:function(){var t=_.template('<h2>Galaxy Tours</h2>\n<p>This page presents a list of interactive tours available on this Galaxy server.\nSelect any tour to get started (and remember, you can click \'End Tour\' at any time).</p>\n\n<div class="col-12 btn-group" role="group" aria-label="Tag selector">\n    <% _.each(tourtagorder, function(tag) { %>\n    <button class="btn btn-primary tag-selector-button" tag-selector-button="<%- tag %>">\n        <%- tag %>\n    </button>\n    <% }); %>\n</div>\n\n<% _.each(tourtagorder, function(tourtagkey) { %>\n<div tag="<%- tourtagkey %>" style="display: block;">\n    <% var tourtag = tourtags[tourtagkey]; %>\n    <h4>\n        <%- tourtag.name %>\n    </h4>\n    <ul class="list-group">\n    <% _.each(tourtag.tours, function(tour) { %>\n        <li class="list-group-item">\n            <a href="/tours/<%- tour.id %>" class="tourItem" data-tour.id=<%- tour.id %>>\n                <%- tour.name || tour.id %>\n            </a>\n             - <%- tour.attributes.description || "No description given." %>\n             <% _.each(tour.attributes.tags, function(tag) { %>\n                <span class="label label-primary sm-label-pad">\n                    <%- tag.charAt(0).toUpperCase() + tag.slice(1) %>\n                </span>\n             <% }); %>\n        </li>\n    <% }); %>\n    </ul>\n</div>\n<% }); %>'),e={};_.each(this.model.models,function(t){null===t.attributes.tags?(void 0===e.Untagged&&(e.Untagged={name:"Untagged",tours:[]}),e.Untagged.tours.push(t)):_.each(t.attributes.tags,function(o){o=o.charAt(0).toUpperCase()+o.slice(1),void 0===e[o]&&(e[o]={name:o,tours:[]}),e[o].tours.push(t)})});var o=Object.keys(e).sort();this.$el.html(t({tours:this.model.models,tourtags:e,tourtagorder:o})).on("click",".tourItem",function(t){t.preventDefault(),l($(this).data("tour.id"))}).on("click",".tag-selector-button",function(t){var e=$(t.target),o="block",n=e.attr("tag-selector-button");e.toggleClass("btn-primary"),e.toggleClass("btn-secondary"),e.hasClass("btn-secondary")&&(o="none"),$("div[tag='"+n+"']").css({display:o})})}});t.default={ToursView:c,hooked_tour_from_data:s,tour_opts:r,giveTour:l}});
\ No newline at end of file
diff --git a/static/scripts/mvc/ui/ui-frames.js b/static/scripts/mvc/ui/ui-frames.js
index 6dfd1d3373c..eead6fbd512 100644
--- a/static/scripts/mvc/ui/ui-frames.js
+++ b/static/scripts/mvc/ui/ui-frames.js
@@ -1 +1 @@
-define("mvc/ui/ui-frames",["exports"],function(t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var e=Backbone.View.extend({initialize:function(t){this.model=t&&t.model||new Backbone.Model(t),this.setElement($("<div/>").addClass("corner frame")),this.$el.append($("<div/>").addClass("f-header corner").append($("<div/>").addClass("f-title")).append($("<div/>").addClass("f-icon f-close fa fa-close").tooltip({title:"Close",placement:"bottom"}))).append($("<div/>").addClass("f-content")).append($("<div/>").addClass("f-resize f-icon corner fa fa-expand").tooltip({title:"Resize"})).append($("<div/>").addClass("f-cover")),this.$header=this.$(".f-header"),this.$title=this.$(".f-title"),this.$content=this.$(".f-content"),this.render(),this.listenTo(this.model,"change",this.render,this)},render:function(){var t=this,e=this.model.attributes;this.$title.html(e.title||""),this.$header.find(".f-icon-left").remove(),_.each(e.menu,function(e){var i=$("<div/>").addClass("f-icon-left").addClass(e.icon);_.isFunction(e.disabled)&&e.disabled()?i.attr("disabled",!0):i.on("click",function(){e.onclick(t)}).tooltip({title:e.tooltip,placement:"bottom"}),t.$header.append(i)}),e.url?this.$content.html($("<iframe/>").addClass("f-iframe").attr("scrolling","auto").attr("src",e.url+(-1===e.url.indexOf("?")?"?":"&")+"widget=True")):e.content&&(_.isFunction(e.content)?e.content(t.$content):t.$content.html(e.content))}}),i=Backbone.View.extend({defaultOptions:{frame:{cols:6,rows:3},rows:1e3,cell:130,margin:5,scroll:5,top_min:40,frame_max:9,visible:!0},cols:0,top:0,top_max:0,frame_z:0,frame_counter:0,frame_uid:0,frame_list:{},frame_shadow:null,visible:!1,event:{},initialize:function(t){var e=this;this.options=_.defaults(t||{},this.defaultOptions),this.visible=this.options.visible,this.top=this.top_max=this.options.top_min,this.setElement($("<div/>").addClass("galaxy-frame").append($("<div/>").addClass("frame-background")).append($("<div/>").addClass("frame-menu frame-scroll-up fa fa-chevron-up fa-2x")).append($("<div/>").addClass("frame-menu frame-scroll-down fa fa-chevron-down fa-2x"))),this.frame_shadow=new Backbone.View({el:$("<div/>").addClass("corner frame-shadow")}),this.$el.append(this.frame_shadow.$el),this._frameInit(this.frame_shadow,"#frame-shadow"),this._frameResize(this.frame_shadow,{width:0,height:0}),this.frame_list["#frame-shadow"]=this.frame_shadow,this.visible?this.show():this.hide(),this._panelRefresh(),$(window).resize(function(){e.visible&&e._panelRefresh()})},render:function(){this.$(".frame-scroll-up")[this.top!=this.options.top_min&&"show"||"hide"](),this.$(".frame-scroll-down")[this.top!=this.top_max&&"show"||"hide"]()},add:function(t){if(this.frame_counter>=this.options.frame_max)Galaxy.modal.show({title:"Warning",body:"You have reached the maximum number of allowed frames ("+this.options.frame_max+").",buttons:{Close:function(){Galaxy.modal.hide()}}});else{var i="#frame-"+this.frame_uid++;if(0!==$(i).length)Galaxy.modal.show({title:"Error",body:"This frame already exists. This page might contain multiple frame managers.",buttons:{Close:function(){Galaxy.modal.hide()}}});else{this.top=this.options.top_min;var o=new e(t);this.$el.append(o.$el),t.width=this._toPixelCoord("width",this.options.frame.cols),t.height=this._toPixelCoord("height",this.options.frame.rows),this.frame_z=parseInt(o.$el.css("z-index")),this.frame_list[i]=o,this.frame_counter++,this._frameInit(o,i),this._frameResize(o,{width:t.width,height:t.height}),this._frameInsert(o,{top:0,left:0},!0),!this.visible&&this.show(),this.trigger("add")}}},del:function(t){var e=this,i=t.$el;i.fadeOut("fast",function(){i.remove(),delete e.frame_list[t.id],e.frame_counter--,e._panelRefresh(!0),e._panelAnimationComplete(),e.trigger("remove")})},show:function(){this.visible=!0,this.$el.fadeIn("fast"),this.trigger("show")},hide:function(){this.event.type||(this.visible=!1,this.$el.fadeOut("fast",function(){$(this).hide()}),this.trigger("hide"))},length:function(){return this.frame_counter},events:{mousemove:"_eventFrameMouseMove",mouseup:"_eventFrameMouseUp",mouseleave:"_eventFrameMouseUp",mousewheel:"_eventPanelScroll",DOMMouseScroll:"_eventPanelScroll","mousedown .frame":"_eventFrameMouseDown","mousedown .frame-background":"_eventHide","mousedown .frame-scroll-up":"_eventPanelScroll_up","mousedown .frame-scroll-down":"_eventPanelScroll_down","mousedown .f-close":"_eventFrameClose"},_eventFrameMouseDown:function(t){$(".tooltip").hide(),this.event.type||(($(t.target).hasClass("f-header")||$(t.target).hasClass("f-title"))&&(this.event.type="drag"),$(t.target).hasClass("f-resize")&&(this.event.type="resize"),this.event.type&&(t.preventDefault(),this.event.target=this._frameIdentify(t.target),this.event.xy={x:t.originalEvent.pageX,y:t.originalEvent.pageY},this._frameDragStart(this.event.target)))},_eventFrameMouseMove:function(t){if(this.event.type){var e={x:t.originalEvent.pageX,y:t.originalEvent.pageY},i={x:e.x-this.event.xy.x,y:e.y-this.event.xy.y};this.event.xy=e;var o=this._frameScreen(this.event.target);if("resize"==this.event.type){o.width+=i.x,o.height+=i.y;var s=this.options.cell-this.options.margin-1;o.width=Math.max(o.width,s),o.height=Math.max(o.height,s),this._frameResize(this.event.target,o),o.width=this._toGridCoord("width",o.width)+1,o.height=this._toGridCoord("height",o.height)+1,o.width=this._toPixelCoord("width",o.width),o.height=this._toPixelCoord("height",o.height),this._frameResize(this.frame_shadow,o),this._frameInsert(this.frame_shadow,{top:this._toGridCoord("top",o.top),left:this._toGridCoord("left",o.left)})}else if("drag"==this.event.type){o.left+=i.x,o.top+=i.y,this._frameOffset(this.event.target,o);var n={top:this._toGridCoord("top",o.top),left:this._toGridCoord("left",o.left)};0!==n.left&&n.left++,this._frameInsert(this.frame_shadow,n)}}},_eventFrameMouseUp:function(t){this.event.type&&(this._frameDragStop(this.event.target),this.event.type=null)},_eventFrameClose:function(t){this.event.type||(t.preventDefault(),this.del(this._frameIdentify(t.target)))},_eventHide:function(t){!this.event.type&&this.hide()},_eventPanelScroll:function(t){!this.event.type&&this.visible&&(0!==$(t.srcElement).parents(".frame").length?t.stopPropagation():(t.preventDefault(),this._panelScroll(t.originalEvent.detail?t.originalEvent.detail:t.originalEvent.wheelDelta/-3)))},_eventPanelScroll_up:function(t){this.event.type||(t.preventDefault(),this._panelScroll(-this.options.scroll))},_eventPanelScroll_down:function(t){this.event.type||(t.preventDefault(),this._panelScroll(this.options.scroll))},_frameIdentify:function(t){return this.frame_list["#"+$(t).closest(".frame").attr("id")]},_frameDragStart:function(t){this._frameFocus(t,!0);var e=this._frameScreen(t);this._frameResize(this.frame_shadow,e),this._frameGrid(this.frame_shadow,t.grid_location),t.grid_location=null,this.frame_shadow.$el.show(),$(".f-cover").show()},_frameDragStop:function(t){this._frameFocus(t,!1);var e=this._frameScreen(this.frame_shadow);this._frameResize(t,e),this._frameGrid(t,this.frame_shadow.grid_location,!0),this.frame_shadow.grid_location=null,this.frame_shadow.$el.hide(),$(".f-cover").hide(),this._panelAnimationComplete()},_toGridCoord:function(t,e){var i="width"==t||"height"==t?1:-1;return"top"==t&&(e-=this.top),parseInt((e+i*this.options.margin)/this.options.cell,10)},_toPixelCoord:function(t,e){var i="width"==t||"height"==t?1:-1,o=e*this.options.cell-i*this.options.margin;return"top"==t&&(o+=this.top),o},_toGrid:function(t){return{top:this._toGridCoord("top",t.top),left:this._toGridCoord("left",t.left),width:this._toGridCoord("width",t.width),height:this._toGridCoord("height",t.height)}},_toPixel:function(t){return{top:this._toPixelCoord("top",t.top),left:this._toPixelCoord("left",t.left),width:this._toPixelCoord("width",t.width),height:this._toPixelCoord("height",t.height)}},_isCollision:function(t){for(var e in this.frame_list){var i=this.frame_list[e];if(null!==i.grid_location&&function(t,e){return!(t.left>e.left+e.width-1||t.left+t.width-1<e.left||t.top>e.top+e.height-1||t.top+t.height-1<e.top)}(t,i.grid_location))return!0}return!1},_locationRank:function(t){return t.top*this.cols+t.left},_panelRefresh:function(t){this.cols=parseInt($(window).width()/this.options.cell,10)+1,this._frameInsert(null,null,t)},_panelAnimationComplete:function(){var t=this;$(".frame").promise().done(function(){t._panelScroll(0,!0)})},_panelScroll:function(t,e){var i=this.top-this.options.scroll*t;if(i=Math.max(i,this.top_max),i=Math.min(i,this.options.top_min),this.top!=i){for(var o in this.frame_list){var s=this.frame_list[o];if(null!==s.grid_location){var n={top:s.screen_location.top-(this.top-i),left:s.screen_location.left};this._frameOffset(s,n,e)}}this.top=i}this.render()},_frameInit:function(t,e){t.id=e,t.screen_location={},t.grid_location={},t.grid_rank=null,t.$el.attr("id",e.substring(1))},_frameInsert:function(t,e,i){var o=this,s=[];t&&(t.grid_location=null,s.push([t,this._locationRank(e)])),_.each(this.frame_list,function(t){null!==t.grid_location&&(t.grid_location=null,s.push([t,t.grid_rank]))}),s.sort(function(t,e){return t[1]<e[1]?-1:t[1]>e[1]?1:0}),_.each(s,function(t){o._framePlace(t[0],i)}),this.top_max=0,_.each(this.frame_list,function(t){null!==t.grid_location&&(o.top_max=Math.max(o.top_max,t.grid_location.top+t.grid_location.height))}),this.top_max=$(window).height()-this.top_max*this.options.cell-2*this.options.margin,this.top_max=Math.min(this.top_max,this.options.top_min),this.render()},_framePlace:function(t,e){t.grid_location=null;for(var i=this._toGrid(this._frameScreen(t)),o=!1,s=0;s<this.options.rows;s++){for(var n=0;n<Math.max(1,this.cols-i.width);n++)if(i.top=s,i.left=n,!this._isCollision(i)){o=!0;break}if(o)break}o?this._frameGrid(t,i,e):console.log("Grid dimensions exceeded.")},_frameFocus:function(t,e){t.$el.css("z-index",this.frame_z+(e?1:0))},_frameOffset:function(t,e,i){if(t.screen_location.left=e.left,t.screen_location.top=e.top,i){this._frameFocus(t,!0);var o=this;t.$el.animate({top:e.top,left:e.left},"fast",function(){o._frameFocus(t,!1)})}else t.$el.css({top:e.top,left:e.left})},_frameResize:function(t,e){t.$el.css({width:e.width,height:e.height}),t.screen_location.width=e.width,t.screen_location.height=e.height},_frameGrid:function(t,e,i){t.grid_location=e,this._frameOffset(t,this._toPixel(e),i),t.grid_rank=this._locationRank(e)},_frameScreen:function(t){var e=t.screen_location;return{top:e.top,left:e.left,width:e.width,height:e.height}}});t.default={View:i}});
\ No newline at end of file
+define("mvc/ui/ui-frames",["exports","utils/localization"],function(t,e){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var i=function(t){return t&&t.__esModule?t:{default:t}}(e),o=Backbone.View.extend({initialize:function(t){this.model=t&&t.model||new Backbone.Model(t),this.setElement($("<div/>").addClass("corner frame")),this.$el.append($("<div/>").addClass("f-header corner").append($("<div/>").addClass("f-title")).append($("<div/>").addClass("f-icon f-close fa fa-close").tooltip({title:(0,i.default)("Close"),placement:"bottom"}))).append($("<div/>").addClass("f-content")).append($("<div/>").addClass("f-resize f-icon corner fa fa-expand").tooltip({title:"Resize"})).append($("<div/>").addClass("f-cover")),this.$header=this.$(".f-header"),this.$title=this.$(".f-title"),this.$content=this.$(".f-content"),this.render(),this.listenTo(this.model,"change",this.render,this)},render:function(){var t=this,e=this.model.attributes;this.$title.html(e.title||""),this.$header.find(".f-icon-left").remove(),_.each(e.menu,function(e){var i=$("<div/>").addClass("f-icon-left").addClass(e.icon);_.isFunction(e.disabled)&&e.disabled()?i.attr("disabled",!0):i.on("click",function(){e.onclick(t)}).tooltip({title:e.tooltip,placement:"bottom"}),t.$header.append(i)}),e.url?this.$content.html($("<iframe/>").addClass("f-iframe").attr("scrolling","auto").attr("src",e.url+(-1===e.url.indexOf("?")?"?":"&")+"widget=True")):e.content&&(_.isFunction(e.content)?e.content(t.$content):t.$content.html(e.content))}}),s=Backbone.View.extend({defaultOptions:{frame:{cols:6,rows:3},rows:1e3,cell:130,margin:5,scroll:5,top_min:40,frame_max:9,visible:!0},cols:0,top:0,top_max:0,frame_z:0,frame_counter:0,frame_uid:0,frame_list:{},frame_shadow:null,visible:!1,event:{},initialize:function(t){var e=this;this.options=_.defaults(t||{},this.defaultOptions),this.visible=this.options.visible,this.top=this.top_max=this.options.top_min,this.setElement($("<div/>").addClass("galaxy-frame").append($("<div/>").addClass("frame-background")).append($("<div/>").addClass("frame-menu frame-scroll-up fa fa-chevron-up fa-2x")).append($("<div/>").addClass("frame-menu frame-scroll-down fa fa-chevron-down fa-2x"))),this.frame_shadow=new Backbone.View({el:$("<div/>").addClass("corner frame-shadow")}),this.$el.append(this.frame_shadow.$el),this._frameInit(this.frame_shadow,"#frame-shadow"),this._frameResize(this.frame_shadow,{width:0,height:0}),this.frame_list["#frame-shadow"]=this.frame_shadow,this.visible?this.show():this.hide(),this._panelRefresh(),$(window).resize(function(){e.visible&&e._panelRefresh()})},render:function(){this.$(".frame-scroll-up")[this.top!=this.options.top_min&&"show"||"hide"](),this.$(".frame-scroll-down")[this.top!=this.top_max&&"show"||"hide"]()},add:function(t){if(this.frame_counter>=this.options.frame_max)Galaxy.modal.show({title:(0,i.default)("Warning"),body:"You have reached the maximum number of allowed frames ("+this.options.frame_max+").",buttons:{Close:function(){Galaxy.modal.hide()}}});else{var e="#frame-"+this.frame_uid++;if(0!==$(e).length)Galaxy.modal.show({title:(0,i.default)("Error"),body:"This frame already exists. This page might contain multiple frame managers.",buttons:{Close:function(){Galaxy.modal.hide()}}});else{this.top=this.options.top_min;var s=new o(t);this.$el.append(s.$el),t.width=this._toPixelCoord("width",this.options.frame.cols),t.height=this._toPixelCoord("height",this.options.frame.rows),this.frame_z=parseInt(s.$el.css("z-index")),this.frame_list[e]=s,this.frame_counter++,this._frameInit(s,e),this._frameResize(s,{width:t.width,height:t.height}),this._frameInsert(s,{top:0,left:0},!0),!this.visible&&this.show(),this.trigger("add")}}},del:function(t){var e=this,i=t.$el;i.fadeOut("fast",function(){i.remove(),delete e.frame_list[t.id],e.frame_counter--,e._panelRefresh(!0),e._panelAnimationComplete(),e.trigger("remove")})},show:function(){this.visible=!0,this.$el.fadeIn("fast"),this.trigger("show")},hide:function(){this.event.type||(this.visible=!1,this.$el.fadeOut("fast",function(){$(this).hide()}),this.trigger("hide"))},length:function(){return this.frame_counter},events:{mousemove:"_eventFrameMouseMove",mouseup:"_eventFrameMouseUp",mouseleave:"_eventFrameMouseUp",mousewheel:"_eventPanelScroll",DOMMouseScroll:"_eventPanelScroll","mousedown .frame":"_eventFrameMouseDown","mousedown .frame-background":"_eventHide","mousedown .frame-scroll-up":"_eventPanelScroll_up","mousedown .frame-scroll-down":"_eventPanelScroll_down","mousedown .f-close":"_eventFrameClose"},_eventFrameMouseDown:function(t){$(".tooltip").hide(),this.event.type||(($(t.target).hasClass("f-header")||$(t.target).hasClass("f-title"))&&(this.event.type="drag"),$(t.target).hasClass("f-resize")&&(this.event.type="resize"),this.event.type&&(t.preventDefault(),this.event.target=this._frameIdentify(t.target),this.event.xy={x:t.originalEvent.pageX,y:t.originalEvent.pageY},this._frameDragStart(this.event.target)))},_eventFrameMouseMove:function(t){if(this.event.type){var e={x:t.originalEvent.pageX,y:t.originalEvent.pageY},i={x:e.x-this.event.xy.x,y:e.y-this.event.xy.y};this.event.xy=e;var o=this._frameScreen(this.event.target);if("resize"==this.event.type){o.width+=i.x,o.height+=i.y;var s=this.options.cell-this.options.margin-1;o.width=Math.max(o.width,s),o.height=Math.max(o.height,s),this._frameResize(this.event.target,o),o.width=this._toGridCoord("width",o.width)+1,o.height=this._toGridCoord("height",o.height)+1,o.width=this._toPixelCoord("width",o.width),o.height=this._toPixelCoord("height",o.height),this._frameResize(this.frame_shadow,o),this._frameInsert(this.frame_shadow,{top:this._toGridCoord("top",o.top),left:this._toGridCoord("left",o.left)})}else if("drag"==this.event.type){o.left+=i.x,o.top+=i.y,this._frameOffset(this.event.target,o);var n={top:this._toGridCoord("top",o.top),left:this._toGridCoord("left",o.left)};0!==n.left&&n.left++,this._frameInsert(this.frame_shadow,n)}}},_eventFrameMouseUp:function(t){this.event.type&&(this._frameDragStop(this.event.target),this.event.type=null)},_eventFrameClose:function(t){this.event.type||(t.preventDefault(),this.del(this._frameIdentify(t.target)))},_eventHide:function(t){!this.event.type&&this.hide()},_eventPanelScroll:function(t){!this.event.type&&this.visible&&(0!==$(t.srcElement).parents(".frame").length?t.stopPropagation():(t.preventDefault(),this._panelScroll(t.originalEvent.detail?t.originalEvent.detail:t.originalEvent.wheelDelta/-3)))},_eventPanelScroll_up:function(t){this.event.type||(t.preventDefault(),this._panelScroll(-this.options.scroll))},_eventPanelScroll_down:function(t){this.event.type||(t.preventDefault(),this._panelScroll(this.options.scroll))},_frameIdentify:function(t){return this.frame_list["#"+$(t).closest(".frame").attr("id")]},_frameDragStart:function(t){this._frameFocus(t,!0);var e=this._frameScreen(t);this._frameResize(this.frame_shadow,e),this._frameGrid(this.frame_shadow,t.grid_location),t.grid_location=null,this.frame_shadow.$el.show(),$(".f-cover").show()},_frameDragStop:function(t){this._frameFocus(t,!1);var e=this._frameScreen(this.frame_shadow);this._frameResize(t,e),this._frameGrid(t,this.frame_shadow.grid_location,!0),this.frame_shadow.grid_location=null,this.frame_shadow.$el.hide(),$(".f-cover").hide(),this._panelAnimationComplete()},_toGridCoord:function(t,e){var i="width"==t||"height"==t?1:-1;return"top"==t&&(e-=this.top),parseInt((e+i*this.options.margin)/this.options.cell,10)},_toPixelCoord:function(t,e){var i="width"==t||"height"==t?1:-1,o=e*this.options.cell-i*this.options.margin;return"top"==t&&(o+=this.top),o},_toGrid:function(t){return{top:this._toGridCoord("top",t.top),left:this._toGridCoord("left",t.left),width:this._toGridCoord("width",t.width),height:this._toGridCoord("height",t.height)}},_toPixel:function(t){return{top:this._toPixelCoord("top",t.top),left:this._toPixelCoord("left",t.left),width:this._toPixelCoord("width",t.width),height:this._toPixelCoord("height",t.height)}},_isCollision:function(t){for(var e in this.frame_list){var i=this.frame_list[e];if(null!==i.grid_location&&function(t,e){return!(t.left>e.left+e.width-1||t.left+t.width-1<e.left||t.top>e.top+e.height-1||t.top+t.height-1<e.top)}(t,i.grid_location))return!0}return!1},_locationRank:function(t){return t.top*this.cols+t.left},_panelRefresh:function(t){this.cols=parseInt($(window).width()/this.options.cell,10)+1,this._frameInsert(null,null,t)},_panelAnimationComplete:function(){var t=this;$(".frame").promise().done(function(){t._panelScroll(0,!0)})},_panelScroll:function(t,e){var i=this.top-this.options.scroll*t;if(i=Math.max(i,this.top_max),i=Math.min(i,this.options.top_min),this.top!=i){for(var o in this.frame_list){var s=this.frame_list[o];if(null!==s.grid_location){var n={top:s.screen_location.top-(this.top-i),left:s.screen_location.left};this._frameOffset(s,n,e)}}this.top=i}this.render()},_frameInit:function(t,e){t.id=e,t.screen_location={},t.grid_location={},t.grid_rank=null,t.$el.attr("id",e.substring(1))},_frameInsert:function(t,e,i){var o=this,s=[];t&&(t.grid_location=null,s.push([t,this._locationRank(e)])),_.each(this.frame_list,function(t){null!==t.grid_location&&(t.grid_location=null,s.push([t,t.grid_rank]))}),s.sort(function(t,e){return t[1]<e[1]?-1:t[1]>e[1]?1:0}),_.each(s,function(t){o._framePlace(t[0],i)}),this.top_max=0,_.each(this.frame_list,function(t){null!==t.grid_location&&(o.top_max=Math.max(o.top_max,t.grid_location.top+t.grid_location.height))}),this.top_max=$(window).height()-this.top_max*this.options.cell-2*this.options.margin,this.top_max=Math.min(this.top_max,this.options.top_min),this.render()},_framePlace:function(t,e){t.grid_location=null;for(var i=this._toGrid(this._frameScreen(t)),o=!1,s=0;s<this.options.rows;s++){for(var n=0;n<Math.max(1,this.cols-i.width);n++)if(i.top=s,i.left=n,!this._isCollision(i)){o=!0;break}if(o)break}o?this._frameGrid(t,i,e):console.log("Grid dimensions exceeded.")},_frameFocus:function(t,e){t.$el.css("z-index",this.frame_z+(e?1:0))},_frameOffset:function(t,e,i){if(t.screen_location.left=e.left,t.screen_location.top=e.top,i){this._frameFocus(t,!0);var o=this;t.$el.animate({top:e.top,left:e.left},"fast",function(){o._frameFocus(t,!1)})}else t.$el.css({top:e.top,left:e.left})},_frameResize:function(t,e){t.$el.css({width:e.width,height:e.height}),t.screen_location.width=e.width,t.screen_location.height=e.height},_frameGrid:function(t,e,i){t.grid_location=e,this._frameOffset(t,this._toPixel(e),i),t.grid_rank=this._locationRank(e)},_frameScreen:function(t){var e=t.screen_location;return{top:e.top,left:e.left,width:e.width,height:e.height}}});t.default={View:s}});
\ No newline at end of file
diff --git a/static/scripts/mvc/ui/ui-select-content.js b/static/scripts/mvc/ui/ui-select-content.js
index c213d39474c..67da04a4a5c 100644
--- a/static/scripts/mvc/ui/ui-select-content.js
+++ b/static/scripts/mvc/ui/ui-select-content.js
@@ -1 +1 @@
-define("mvc/ui/ui-select-content",["exports","utils/utils","mvc/ui/ui-misc","mvc/ui/ui-select-default"],function(t,e,i,a){"use strict";function l(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var n=l(e),s=l(i),o=l(a),c={DISABLED:"disabled",ENABLED:"enabled",LINKED:"linked"},h={data:[{src:"hda",icon:"fa-file-o",tooltip:"Single dataset",multiple:!1,batch:c.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:"Multiple datasets",multiple:!0,batch:c.LINKED},{src:"hdca",icon:"fa-folder-o",tooltip:"Dataset collection",multiple:!1,batch:c.LINKED}],data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:"Multiple datasets",multiple:!0,batch:c.DISABLED},{src:"hdca",icon:"fa-folder-o",tooltip:"Dataset collections",multiple:!0,batch:c.DISABLED}],data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:"Dataset collection",multiple:!1,batch:c.DISABLED}],workflow_data:[{src:"hda",icon:"fa-file-o",tooltip:"Single dataset",multiple:!1,batch:c.DISABLED}],workflow_data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:"Multiple datasets",multiple:!0,batch:c.DISABLED}],workflow_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:"Dataset collection",multiple:!1,batch:c.DISABLED}],module_data:[{src:"hda",icon:"fa-file-o",tooltip:"Single dataset",multiple:!1,batch:c.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:"Multiple datasets",multiple:!0,batch:c.ENABLED}],module_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:"Dataset collection",multiple:!1,batch:c.DISABLED},{src:"hdca",icon:"fa-folder",tooltip:"Multiple collections",multiple:!0,batch:c.ENABLED}]},d=Backbone.View.extend({initialize:function(t){var e=this;this.model=t&&t.model||new Backbone.Model({src_labels:{hda:"dataset",hdca:"dataset collection"},pagelimit:100,statustimer:1e3}).set(t),this.setElement($("<div/>").addClass("ui-select-content")),this.button_product=new s.default.RadioButton.View({value:"false",data:[{icon:"fa fa-chain",value:"false",tooltip:"Linked inputs will be run in matched order with other datasets e.g. use this for matching forward and reverse reads."},{icon:"fa fa-chain-broken",value:"true",tooltip:"Unlinked dataset inputs will be run against *all* other inputs."}]});var i=$("<div/>").addClass("ui-form-info").append($("<i/>").addClass("fa fa-sitemap")).append($("<span/>").html("This is a batch mode input field. Separate jobs will be triggered for each dataset selection."));this.$batch={linked:i.clone(),enabled:i.clone().append($("<div/>").append($("<div/>").addClass("ui-form-title").html("Batch options:")).append(this.button_product.$el)).append($("<div/>").css("clear","both"))},this.$el.on("dragenter",function(t){this.lastenter=t.target,e.$el.addClass("ui-dragover")}).on("dragover",function(t){t.preventDefault()}).on("dragleave",function(t){this.lastenter===t.target&&e.$el.removeClass("ui-dragover")}).on("drop",function(t){e._handleDrop(t)}),this.history={},this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:current",this._changeCurrent,this),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:type change:optional change:multiple change:extensions",this._changeType,this),this.render(),this.on("change",function(){t.onchange&&t.onchange(e.value())})},render:function(){this._changeType(),this._changeValue(),this._changeWait()},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},update:function(t){this.model.set("data",t)},value:function(t){void 0!==t&&this.model.set("value",t);var e=this.model.get("current");if(this.config[e]){var i=this.fields[e].value();if(null!==i&&(i=$.isArray(i)?i:[i]).length>0){var a=this._batch({values:[]});for(var l in i){var n=this.history[i[l]+"_"+this.config[e].src];if(!n)return Galaxy.emit.debug("ui-select-content::value()","Requested details not found for '"+i[l]+"'."),null;a.values.push(n)}return a.values.sort(function(t,e){return t.hid-e.hid}),a}}else Galaxy.emit.debug("ui-select-content::value()","Invalid value/source '"+t+"'.");return null},_changeCurrent:function(){var t=this;_.each(this.fields,function(e,i){t.model.get("current")==i?(e.$el.show(),_.each(t.$batch,function(e,a){e[t.config[i].batch==a?"show":"hide"]()}),t.button_type.value(i)):e.$el.hide()})},_changeType:function(){var t=this,e=(this.model.get("flavor")?this.model.get("flavor")+"_":"")+String(this.model.get("type"))+(this.model.get("multiple")?"_multiple":"");h[e]?this.config=h[e]:(this.config=h.data,Galaxy.emit.debug("ui-select-content::_changeType()","Invalid configuration/type id '"+e+"'."));var i=t.model.get("data"),a=n.default.textify(this.model.get("extensions")),l=this.model.get("src_labels");this.fields=[],this.button_data=[],_.each(this.config,function(e,n){t.button_data.push({value:n,icon:e.icon,tooltip:e.tooltip}),t.fields.push(new o.default.View({optional:t.model.get("optional"),multiple:e.multiple,searchable:!e.multiple||i&&i[e.src]&&i[e.src].length>t.model.get("pagelimit"),individual:!0,error_text:"No "+(a?a+" ":"")+(l[e.src]||"content")+" available.",onchange:function(){t.trigger("change")}}))}),this.button_type=new s.default.RadioButton.View({value:this.model.get("current"),data:this.button_data,onchange:function(e){t.model.set("current",e),t.trigger("change")}}),this.$el.empty();var c=0;this.fields.length>1&&(this.$el.append(this.button_type.$el),c=Math.max(0,36*this.fields.length)+"px"),_.each(this.fields,function(e){t.$el.append(e.$el.css({"margin-left":c}))}),_.each(this.$batch,function(e,i){t.$el.append(e.css({"margin-left":c}))}),this.model.set("current",0),this._changeCurrent(),this._changeData()},_changeWait:function(){var t=this;_.each(this.fields,function(e){e[t.model.get("wait")?"wait":"unwait"]()})},_changeData:function(){var t=this.model.get("data"),e=this,i={};_.each(t,function(t,a){i[a]=[],_.each(t,function(t){i[a].push({hid:t.hid,keep:t.keep,label:t.hid+": "+t.name,value:t.id,tags:t.tags}),e.history[t.id+"_"+a]=t})}),_.each(this.config,function(t,a){i[t.src]&&e.fields[a].add(i[t.src],function(t,e){return e.hid-t.hid})})},_changeValue:function(){var t=this.model.get("value");if(t&&t.values&&t.values.length>0){var e=[];_.each(t.values,function(t){e.push(t.id)});for(var i=t.values[0].src,a=t.values.length>1,l=0;l<this.config.length;l++){var n=this.fields[l],s=this.config[l];if(s.src==i&&-1!==[a,!0].indexOf(s.multiple)){this.model.set("current",l),n.value(e);break}}}else _.each(this.fields,function(t){t.value(null)})},_handleDrop:function(t){try{var e=this.model.get("data"),i=this.model.get("current"),a=this.config[i],l=this.fields[i],n=JSON.parse(t.originalEvent.dataTransfer.getData("text"))[0],s=n.id,o="dataset"==n.history_content_type?"hda":"hdca",c={id:s,src:o};if(e&&_.findWhere(e[o],c)){if(a.src==o){var h=l.value();h&&a.multiple?-1==h.indexOf(s)&&h.push(s):h=s,l.value(h)}else this.model.set("value",{values:[c]}),this.model.trigger("change:value");this.trigger("change"),this._handleDropStatus("success")}else this._handleDropStatus("danger")}catch(t){this._handleDropStatus("danger")}t.preventDefault()},_handleDropStatus:function(t){var e=this;this.$el.removeClass("ui-dragover").addClass("ui-dragover-"+t),setTimeout(function(){e.$el.removeClass("ui-dragover-"+t)},this.model.get("statustimer"))},_batch:function(t){t.batch=!1;var e=this.model.get("current"),i=this.config[e];if("hdca"==i.src&&!i.multiple){var a=this.history[this.fields[e].value()+"_hdca"];a&&a.map_over_type&&(t.batch=!0)}return i.batch!=c.LINKED&&i.batch!=c.ENABLED||(t.batch=!0,i.batch==c.ENABLED&&"true"===this.button_product.value()&&(t.product=!0)),t}});t.default={View:d}});
\ No newline at end of file
+define("mvc/ui/ui-select-content",["exports","utils/localization","utils/utils","mvc/ui/ui-misc","mvc/ui/ui-select-default"],function(t,e,a,i,l){"use strict";function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var s=n(e),o=n(a),c=n(i),h=n(l),d={DISABLED:"disabled",ENABLED:"enabled",LINKED:"linked"},u={data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:d.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:d.LINKED},{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:d.LINKED}],data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:d.DISABLED},{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collections"),multiple:!0,batch:d.DISABLED}],data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:d.DISABLED}],workflow_data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:d.DISABLED}],workflow_data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:d.DISABLED}],workflow_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:d.DISABLED}],module_data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:d.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:d.ENABLED}],module_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:d.DISABLED},{src:"hdca",icon:"fa-folder",tooltip:(0,s.default)("Multiple collections"),multiple:!0,batch:d.ENABLED}]},r=Backbone.View.extend({initialize:function(t){var e=this;this.model=t&&t.model||new Backbone.Model({src_labels:{hda:"dataset",hdca:"dataset collection"},pagelimit:100,statustimer:1e3}).set(t),this.setElement($("<div/>").addClass("ui-select-content")),this.button_product=new c.default.RadioButton.View({value:"false",data:[{icon:"fa fa-chain",value:"false",tooltip:"Linked inputs will be run in matched order with other datasets e.g. use this for matching forward and reverse reads."},{icon:"fa fa-chain-broken",value:"true",tooltip:"Unlinked dataset inputs will be run against *all* other inputs."}]});var a=$("<div/>").addClass("ui-form-info").append($("<i/>").addClass("fa fa-sitemap")).append($("<span/>").html("This is a batch mode input field. Separate jobs will be triggered for each dataset selection."));this.$batch={linked:a.clone(),enabled:a.clone().append($("<div/>").append($("<div/>").addClass("ui-form-title").html("Batch options:")).append(this.button_product.$el)).append($("<div/>").css("clear","both"))},this.$el.on("dragenter",function(t){this.lastenter=t.target,e.$el.addClass("ui-dragover")}).on("dragover",function(t){t.preventDefault()}).on("dragleave",function(t){this.lastenter===t.target&&e.$el.removeClass("ui-dragover")}).on("drop",function(t){e._handleDrop(t)}),this.history={},this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:current",this._changeCurrent,this),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:type change:optional change:multiple change:extensions",this._changeType,this),this.render(),this.on("change",function(){t.onchange&&t.onchange(e.value())})},render:function(){this._changeType(),this._changeValue(),this._changeWait()},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},update:function(t){this.model.set("data",t)},value:function(t){void 0!==t&&this.model.set("value",t);var e=this.model.get("current");if(this.config[e]){var a=this.fields[e].value();if(null!==a&&(a=$.isArray(a)?a:[a]).length>0){var i=this._batch({values:[]});for(var l in a){var n=this.history[a[l]+"_"+this.config[e].src];if(!n)return Galaxy.emit.debug("ui-select-content::value()","Requested details not found for '"+a[l]+"'."),null;i.values.push(n)}return i.values.sort(function(t,e){return t.hid-e.hid}),i}}else Galaxy.emit.debug("ui-select-content::value()","Invalid value/source '"+t+"'.");return null},_changeCurrent:function(){var t=this;_.each(this.fields,function(e,a){t.model.get("current")==a?(e.$el.show(),_.each(t.$batch,function(e,i){e[t.config[a].batch==i?"show":"hide"]()}),t.button_type.value(a)):e.$el.hide()})},_changeType:function(){var t=this,e=(this.model.get("flavor")?this.model.get("flavor")+"_":"")+String(this.model.get("type"))+(this.model.get("multiple")?"_multiple":"");u[e]?this.config=u[e]:(this.config=u.data,Galaxy.emit.debug("ui-select-content::_changeType()","Invalid configuration/type id '"+e+"'."));var a=t.model.get("data"),i=o.default.textify(this.model.get("extensions")),l=this.model.get("src_labels");this.fields=[],this.button_data=[],_.each(this.config,function(e,n){t.button_data.push({value:n,icon:e.icon,tooltip:e.tooltip}),t.fields.push(new h.default.View({optional:t.model.get("optional"),multiple:e.multiple,searchable:!e.multiple||a&&a[e.src]&&a[e.src].length>t.model.get("pagelimit"),individual:!0,error_text:"No "+(i?i+" ":"")+(l[e.src]||"content")+" available.",onchange:function(){t.trigger("change")}}))}),this.button_type=new c.default.RadioButton.View({value:this.model.get("current"),data:this.button_data,onchange:function(e){t.model.set("current",e),t.trigger("change")}}),this.$el.empty();var n=0;this.fields.length>1&&(this.$el.append(this.button_type.$el),n=Math.max(0,36*this.fields.length)+"px"),_.each(this.fields,function(e){t.$el.append(e.$el.css({"margin-left":n}))}),_.each(this.$batch,function(e,a){t.$el.append(e.css({"margin-left":n}))}),this.model.set("current",0),this._changeCurrent(),this._changeData()},_changeWait:function(){var t=this;_.each(this.fields,function(e){e[t.model.get("wait")?"wait":"unwait"]()})},_changeData:function(){var t=this.model.get("data"),e=this,a={};_.each(t,function(t,i){a[i]=[],_.each(t,function(t){a[i].push({hid:t.hid,keep:t.keep,label:t.hid+": "+t.name,value:t.id,tags:t.tags}),e.history[t.id+"_"+i]=t})}),_.each(this.config,function(t,i){a[t.src]&&e.fields[i].add(a[t.src],function(t,e){return e.hid-t.hid})})},_changeValue:function(){var t=this.model.get("value");if(t&&t.values&&t.values.length>0){var e=[];_.each(t.values,function(t){e.push(t.id)});for(var a=t.values[0].src,i=t.values.length>1,l=0;l<this.config.length;l++){var n=this.fields[l],s=this.config[l];if(s.src==a&&-1!==[i,!0].indexOf(s.multiple)){this.model.set("current",l),n.value(e);break}}}else _.each(this.fields,function(t){t.value(null)})},_handleDrop:function(t){try{var e=this.model.get("data"),a=this.model.get("current"),i=this.config[a],l=this.fields[a],n=JSON.parse(t.originalEvent.dataTransfer.getData("text"))[0],s=n.id,o="dataset"==n.history_content_type?"hda":"hdca",c={id:s,src:o};if(e&&_.findWhere(e[o],c)){if(i.src==o){var h=l.value();h&&i.multiple?-1==h.indexOf(s)&&h.push(s):h=s,l.value(h)}else this.model.set("value",{values:[c]}),this.model.trigger("change:value");this.trigger("change"),this._handleDropStatus("success")}else this._handleDropStatus("danger")}catch(t){this._handleDropStatus("danger")}t.preventDefault()},_handleDropStatus:function(t){var e=this;this.$el.removeClass("ui-dragover").addClass("ui-dragover-"+t),setTimeout(function(){e.$el.removeClass("ui-dragover-"+t)},this.model.get("statustimer"))},_batch:function(t){t.batch=!1;var e=this.model.get("current"),a=this.config[e];if("hdca"==a.src&&!a.multiple){var i=this.history[this.fields[e].value()+"_hdca"];i&&i.map_over_type&&(t.batch=!0)}return a.batch!=d.LINKED&&a.batch!=d.ENABLED||(t.batch=!0,a.batch==d.ENABLED&&"true"===this.button_product.value()&&(t.product=!0)),t}});t.default={View:r}});
\ No newline at end of file
diff --git a/static/scripts/mvc/ui/ui-select-genomespace.js b/static/scripts/mvc/ui/ui-select-genomespace.js
index 2e6764923fe..f16ec5fa740 100644
--- a/static/scripts/mvc/ui/ui-select-genomespace.js
+++ b/static/scripts/mvc/ui/ui-select-genomespace.js
@@ -1 +1 @@
-define("mvc/ui/ui-select-genomespace",["exports","utils/utils","mvc/ui/ui-misc","mvc/tool/tool-genomespace"],function(e,t,s,i){"use strict";function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});n(t);var o=n(s),l=n(i),a=Backbone.View.extend({initialize:function(e){var t=this;this.browse_button=new o.default.ButtonIcon({title:"Browse",icon:"fa fa-sign-in",tooltip:"Browse GenomeSpace",onclick:function(){t.browseGenomeSpace()}}),this.filename_textbox=new o.default.Input,this.token_textbox=new o.default.Input({type:"password"}),this.setElement(this._template(e)),this.$(".ui-gs-browse-button").append(this.browse_button.$el),this.$(".ui-gs-filename-textbox").append(this.filename_textbox.$el),this.$(".ui-gs-token-textbox").append(this.token_textbox.$el)},browseGenomeSpace:function(e){var t=this;l.default.openFileBrowser({successCallback:function(e){t.value(e.destination+"^"+e.token)}})},_template:function(e){return'<div class="ui-gs-select-file"><div class="ui-gs-browse-field"><span class="ui-gs-browse-button" /><span class="ui-gs-filename-textbox" /></div><div class="ui-gs-token-field"><span class=ui-gs-label"><div class="ui-gs-token-label">Token</div></span><span class="ui-gs-token-textbox" /></div></div>'},value:function(e){if(void 0===e)return this._getValue();this._setValue(e)},_getValue:function(){return this.filename_textbox.value()+"^"+this.token_textbox.value()},_setValue:function(e){e&&(values=e.split("^"),this.filename_textbox.value(values[0]),this.token_textbox.value(values[1]))}});e.default={View:a}});
\ No newline at end of file
+define("mvc/ui/ui-select-genomespace",["exports","utils/localization","utils/utils","mvc/ui/ui-misc","mvc/tool/tool-genomespace"],function(e,t,i,s,n){"use strict";function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var l=o(t),a=(o(i),o(s)),u=o(n),c=Backbone.View.extend({initialize:function(e){var t=this;this.browse_button=new a.default.ButtonIcon({title:(0,l.default)("Browse"),icon:"fa fa-sign-in",tooltip:(0,l.default)("Browse GenomeSpace"),onclick:function(){t.browseGenomeSpace()}}),this.filename_textbox=new a.default.Input,this.token_textbox=new a.default.Input({type:"password"}),this.setElement(this._template(e)),this.$(".ui-gs-browse-button").append(this.browse_button.$el),this.$(".ui-gs-filename-textbox").append(this.filename_textbox.$el),this.$(".ui-gs-token-textbox").append(this.token_textbox.$el)},browseGenomeSpace:function(e){var t=this;u.default.openFileBrowser({successCallback:function(e){t.value(e.destination+"^"+e.token)}})},_template:function(e){return'<div class="ui-gs-select-file"><div class="ui-gs-browse-field"><span class="ui-gs-browse-button" /><span class="ui-gs-filename-textbox" /></div><div class="ui-gs-token-field"><span class=ui-gs-label"><div class="ui-gs-token-label">Token</div></span><span class="ui-gs-token-textbox" /></div></div>'},value:function(e){if(void 0===e)return this._getValue();this._setValue(e)},_getValue:function(){return this.filename_textbox.value()+"^"+this.token_textbox.value()},_setValue:function(e){e&&(values=e.split("^"),this.filename_textbox.value(values[0]),this.token_textbox.value(values[1]))}});e.default={View:c}});
\ No newline at end of file
diff --git a/static/scripts/mvc/upload/collection/collection-row.js b/static/scripts/mvc/upload/collection/collection-row.js
index 7f60187fa07..50310a70a76 100644
--- a/static/scripts/mvc/upload/collection/collection-row.js
+++ b/static/scripts/mvc/upload/collection/collection-row.js
@@ -1 +1 @@
-define("mvc/upload/collection/collection-row",["exports","utils/utils","mvc/upload/upload-model","mvc/upload/upload-settings","mvc/ui/ui-popover","mvc/ui/ui-select"],function(t,e,s,i,o,a){"use strict";function l(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var n=l(e),d=(l(s),l(i)),h=l(o);l(a);t.default=Backbone.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(t,e){var s=this;this.app=t,this.model=e.model,this.setElement(this._template(e.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title-extended"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new h.default.View({title:"Upload configuration",container:this.$(".upload-settings"),placement:"bottom"});this.app.select_genome.value(),this.app.select_extension.value();this.$symbol.on("click",function(){s._removeRow()}),this.$text_content.on("change input",function(t){s.model.set({url_paste:$(t.target).val(),file_size:$(t.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){s._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){s._refreshStatus()}),this.listenTo(this.model,"change:info",function(){s._refreshInfo()}),this.listenTo(this.model,"change:file_size",function(){s._refreshFileSize()}),this.listenTo(this.model,"remove",function(){s.remove()}),this.app.collection.on("reset",function(){s.remove()})},render:function(){var t=this.model.attributes;this.$title.html(_.escape(t.file_name)),this.$size.html(n.default.bytesToString(t.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==t.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==t.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==t.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshInfo:function(){var t=this.model.get("info");t?this.$info_text.html("<strong>Failed: </strong>"+t).show():this.$info_text.hide()},_refreshPercentage:function(){var t=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:t+"%"}),this.$percentage.html(100!=t?t+"%":"Adding to history...")},_refreshStatus:function(){var t=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[t]),this.model.set("enabled","init"==t);var e=this.model.get("enabled");this.$text_content.attr("disabled",!e),"success"==t&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==t&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(n.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new d.default(this).$el),this.settings.show())},_template:function(t){return'<tr id="upload-row-'+t.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title-extended"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})});
\ No newline at end of file
+define("mvc/upload/collection/collection-row",["exports","utils/localization","utils/utils","mvc/upload/upload-model","mvc/upload/upload-settings","mvc/ui/ui-popover","mvc/ui/ui-select"],function(t,e,s,i,o,a,l){"use strict";function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var d=n(e),h=n(s),r=(n(i),n(o)),c=n(a);n(l);t.default=Backbone.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(t,e){var s=this;this.app=t,this.model=e.model,this.setElement(this._template(e.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title-extended"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new c.default.View({title:(0,d.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});this.app.select_genome.value(),this.app.select_extension.value();this.$symbol.on("click",function(){s._removeRow()}),this.$text_content.on("change input",function(t){s.model.set({url_paste:$(t.target).val(),file_size:$(t.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){s._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){s._refreshStatus()}),this.listenTo(this.model,"change:info",function(){s._refreshInfo()}),this.listenTo(this.model,"change:file_size",function(){s._refreshFileSize()}),this.listenTo(this.model,"remove",function(){s.remove()}),this.app.collection.on("reset",function(){s.remove()})},render:function(){var t=this.model.attributes;this.$title.html(_.escape(t.file_name)),this.$size.html(h.default.bytesToString(t.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==t.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==t.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==t.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshInfo:function(){var t=this.model.get("info");t?this.$info_text.html("<strong>Failed: </strong>"+t).show():this.$info_text.hide()},_refreshPercentage:function(){var t=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:t+"%"}),this.$percentage.html(100!=t?t+"%":"Adding to history...")},_refreshStatus:function(){var t=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[t]),this.model.set("enabled","init"==t);var e=this.model.get("enabled");this.$text_content.attr("disabled",!e),"success"==t&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==t&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(h.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new r.default(this).$el),this.settings.show())},_template:function(t){return'<tr id="upload-row-'+t.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title-extended"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})});
\ No newline at end of file
diff --git a/static/scripts/mvc/upload/collection/collection-view.js b/static/scripts/mvc/upload/collection/collection-view.js
index f249c927508..d15ba4c0b92 100644
--- a/static/scripts/mvc/upload/collection/collection-view.js
+++ b/static/scripts/mvc/upload/collection/collection-view.js
@@ -1 +1 @@
-define("mvc/upload/collection/collection-view",["exports","utils/utils","mvc/upload/upload-model","mvc/upload/collection/collection-row","mvc/upload/upload-ftp","mvc/upload/upload-extension","mvc/ui/ui-popover","mvc/ui/ui-select","mvc/ui/ui-misc","mvc/collection/list-collection-creator","utils/uploadbox"],function(t,e,n,o,i,s,l,a,u,c){"use strict";function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});r(e);var d=r(n),p=r(o),h=r(i),f=r(s),b=r(l),v=r(a),m=r(u);r(c);t.default=Backbone.View.extend({upload_size:0,collection:new d.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(t){var e=this;this.app=t,this.options=t.options,this.list_extensions=t.list_extensions,this.list_genomes=t.list_genomes,this.ui_button=t.ui_button,this.ftp_upload_site=t.currentFtp(),this.setElement(this._template()),this.btnLocal=new m.default.Button({id:"btn-local",title:"Choose local files",onclick:function(){e.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new m.default.Button({id:"btn-ftp",title:"Choose FTP files",onclick:function(){e._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new m.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){e._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new m.default.Button({id:"btn-start",title:"Start",onclick:function(){e._eventStart()}}),this.btnBuild=new m.default.Button({id:"btn-build",title:"Build",onclick:function(){e._eventBuild()}}),this.btnStop=new m.default.Button({id:"btn-stop",title:"Pause",onclick:function(){e._eventStop()}}),this.btnReset=new m.default.Button({id:"btn-reset",title:"Reset",onclick:function(){e._eventReset()}}),this.btnClose=new m.default.Button({id:"btn-close",title:"Close",onclick:function(){e.app.modal.hide()}}),_.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnBuild,this.btnClose],function(t){e.$(".upload-buttons").prepend(t.$el)}),this.uploadbox=this.$(".upload-box").uploadbox({url:this.app.options.nginx_upload_path,announce:function(t,n){e._eventAnnounce(t,n)},initialize:function(t){return e.app.toData([e.collection.get(t)],e.history_id)},progress:function(t,n){e._eventProgress(t,n)},success:function(t,n){e._eventSuccess(t,n)},error:function(t,n){e._eventError(t,n)},complete:function(){e._eventComplete()},ondragover:function(){e.$(".upload-box").addClass("highlight")},ondragleave:function(){e.$(".upload-box").removeClass("highlight")}}),this.ftp=new b.default.View({title:"FTP files",container:this.btnFtp.$el}),this.select_extension=new v.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-extension"),data:_.filter(this.list_extensions,function(t){return!t.composite_files}),value:this.options.default_extension,onchange:function(t){e.updateExtension(t)}}),this.collectionType="list",this.select_collection=new v.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-collection-type"),data:[{id:"list",text:"List"},{id:"paired",text:"Paired"},{id:"list:paired",text:"List of Pairs"}],value:"list",onchange:function(t){e.updateCollectionType(t)}}),this.$(".upload-footer-extension-info").on("click",function(t){new f.default({$el:$(t.target),title:e.select_extension.text(),extension:e.select_extension.value(),list:e.list_extensions,placement:"top"})}).on("mousedown",function(t){t.preventDefault()}),this.select_genome=new v.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(t){e.updateGenome(t)}}),this.collection.on("remove",function(t){e._eventRemove(t)}),this._updateScreen()},_eventAnnounce:function(t,e){this.counter.announce++;var n=new d.default.Model({id:t,file_name:e.name,file_size:e.size,file_mode:e.mode||"local",file_path:e.path,file_data:e,extension:this.select_extension.value(),genome:this.select_genome.value()});this.collection.add(n);var o=new p.default(this,{model:n});this.$(".upload-table > tbody:first").append(o.$el),this._updateScreen(),o.render()},_eventProgress:function(t,e){var n=this.collection.get(t);n.set("percentage",e),this.ui_button.model.set("percentage",this._uploadPercentage(e,n.get("file_size")))},_eventSuccess:function(t,e){var n=_.pluck(e.outputs,"hid"),o=this.collection.get(t);o.set({percentage:100,status:"success",hids:n}),this.ui_button.model.set("percentage",this._uploadPercentage(100,o.get("file_size"))),this.upload_completed+=100*o.get("file_size"),this.counter.announce--,this.counter.success++,this._updateScreen(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(t,e){var n=this.collection.get(t);n.set({percentage:100,status:"error",info:e}),this.ui_button.model.set({percentage:this._uploadPercentage(100,n.get("file_size")),status:"danger"}),this.upload_completed+=100*n.get("file_size"),this.counter.announce--,this.counter.error++,this._updateScreen()},_eventComplete:function(){this.collection.each(function(t){"queued"==t.get("status")&&t.set("status","init")}),this.counter.running=0,this._updateScreen()},_eventBuild:function(){var t=[];_.forEach(this.collection.models,function(e){t.push.apply(t,e.get("hids"))});var e=_.map(t,function(t){return Galaxy.currHistoryPanel.collection.getByHid(t)}),n=new Galaxy.currHistoryPanel.collection.constructor(e);n.historyId=Galaxy.currHistoryPanel.collection.historyId,Galaxy.currHistoryPanel.buildCollection(this.collectionType,n,!0),this.counter.running=0,this._updateScreen(),this._eventReset(),this.app.modal.hide()},_eventRemove:function(t){var e=t.get("status");"success"==e?this.counter.success--:"error"==e?this.counter.error--:this.counter.announce--,this.uploadbox.remove(t.id),this._updateScreen()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var t=this;this.ftp.append(new h.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(e){return t.uploadbox.add([{mode:"ftp",name:e.path,size:e.size,path:e.path}])},onremove:function(e){t.collection.remove(e)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(!(0==this.counter.announce||this.counter.running>0)){var t=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(e){"init"==e.get("status")&&(e.set("status","queued"),t.upload_size+=e.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this.uploadbox.start(),this._updateScreen()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),$(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){0==this.counter.running&&(this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this._updateScreen())},updateExtension:function(t,e){var n=this;this.collection.each(function(o){"init"!=o.get("status")||o.get("extension")!=n.options.default_extension&&e||o.set("extension",t)})},updateCollectionType:function(t){this.collectionType=t},updateGenome:function(t,e){var n=this;this.collection.each(function(o){"init"!=o.get("status")||o.get("genome")!=n.options.default_genome&&e||o.set("genome",t)})},_updateScreen:function(){var t="";t=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(t);var e=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,n=0==this.counter.running&&this.counter.announce>0,o=0==this.counter.running&&0==this.counter.announce&&this.counter.success>0&&0==this.counter.error,i=0==this.counter.running,s=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[e?"enable":"disable"](),this.btnStart[n?"enable":"disable"](),this.btnStart.$el[n?"addClass":"removeClass"]("btn-primary"),this.btnBuild[o?"enable":"disable"](),this.btnBuild.$el[o?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[i?"enable":"disable"](),this.btnFtp[i?"enable":"disable"](),this.btnCreate[i?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[s?"show":"hide"](),this.$(".upload-helper")[s?"hide":"show"]()},_uploadPercentage:function(t,e){return(this.upload_completed+t*e)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title-compressed">Collection Type:</span><span class="upload-footer-collection-type"/><span class="upload-footer-title-compressed">File Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title-compressed">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})});
\ No newline at end of file
+define("mvc/upload/collection/collection-view",["exports","utils/localization","utils/utils","mvc/upload/upload-model","mvc/upload/collection/collection-row","mvc/upload/upload-ftp","mvc/upload/upload-extension","mvc/ui/ui-popover","mvc/ui/ui-select","mvc/ui/ui-misc","mvc/collection/list-collection-creator","utils/uploadbox"],function(t,e,n,o,i,s,l,a,u,c,r){"use strict";function d(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var p=d(e),h=(d(n),d(o)),f=d(i),b=d(s),v=d(l),m=d(a),g=d(u),x=d(c);d(r);t.default=Backbone.View.extend({upload_size:0,collection:new h.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(t){var e=this;this.app=t,this.options=t.options,this.list_extensions=t.list_extensions,this.list_genomes=t.list_genomes,this.ui_button=t.ui_button,this.ftp_upload_site=t.currentFtp(),this.setElement(this._template()),this.btnLocal=new x.default.Button({id:"btn-local",title:(0,p.default)("Choose local files"),onclick:function(){e.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new x.default.Button({id:"btn-ftp",title:(0,p.default)("Choose FTP files"),onclick:function(){e._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){e._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,p.default)("Start"),onclick:function(){e._eventStart()}}),this.btnBuild=new x.default.Button({id:"btn-build",title:(0,p.default)("Build"),onclick:function(){e._eventBuild()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,p.default)("Pause"),onclick:function(){e._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,p.default)("Reset"),onclick:function(){e._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,p.default)("Close"),onclick:function(){e.app.modal.hide()}}),_.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnBuild,this.btnClose],function(t){e.$(".upload-buttons").prepend(t.$el)}),this.uploadbox=this.$(".upload-box").uploadbox({url:this.app.options.nginx_upload_path,announce:function(t,n){e._eventAnnounce(t,n)},initialize:function(t){return e.app.toData([e.collection.get(t)],e.history_id)},progress:function(t,n){e._eventProgress(t,n)},success:function(t,n){e._eventSuccess(t,n)},error:function(t,n){e._eventError(t,n)},complete:function(){e._eventComplete()},ondragover:function(){e.$(".upload-box").addClass("highlight")},ondragleave:function(){e.$(".upload-box").removeClass("highlight")}}),this.ftp=new m.default.View({title:(0,p.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new g.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-extension"),data:_.filter(this.list_extensions,function(t){return!t.composite_files}),value:this.options.default_extension,onchange:function(t){e.updateExtension(t)}}),this.collectionType="list",this.select_collection=new g.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-collection-type"),data:[{id:"list",text:"List"},{id:"paired",text:"Paired"},{id:"list:paired",text:"List of Pairs"}],value:"list",onchange:function(t){e.updateCollectionType(t)}}),this.$(".upload-footer-extension-info").on("click",function(t){new v.default({$el:$(t.target),title:e.select_extension.text(),extension:e.select_extension.value(),list:e.list_extensions,placement:"top"})}).on("mousedown",function(t){t.preventDefault()}),this.select_genome=new g.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(t){e.updateGenome(t)}}),this.collection.on("remove",function(t){e._eventRemove(t)}),this._updateScreen()},_eventAnnounce:function(t,e){this.counter.announce++;var n=new h.default.Model({id:t,file_name:e.name,file_size:e.size,file_mode:e.mode||"local",file_path:e.path,file_data:e,extension:this.select_extension.value(),genome:this.select_genome.value()});this.collection.add(n);var o=new f.default(this,{model:n});this.$(".upload-table > tbody:first").append(o.$el),this._updateScreen(),o.render()},_eventProgress:function(t,e){var n=this.collection.get(t);n.set("percentage",e),this.ui_button.model.set("percentage",this._uploadPercentage(e,n.get("file_size")))},_eventSuccess:function(t,e){var n=_.pluck(e.outputs,"hid"),o=this.collection.get(t);o.set({percentage:100,status:"success",hids:n}),this.ui_button.model.set("percentage",this._uploadPercentage(100,o.get("file_size"))),this.upload_completed+=100*o.get("file_size"),this.counter.announce--,this.counter.success++,this._updateScreen(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(t,e){var n=this.collection.get(t);n.set({percentage:100,status:"error",info:e}),this.ui_button.model.set({percentage:this._uploadPercentage(100,n.get("file_size")),status:"danger"}),this.upload_completed+=100*n.get("file_size"),this.counter.announce--,this.counter.error++,this._updateScreen()},_eventComplete:function(){this.collection.each(function(t){"queued"==t.get("status")&&t.set("status","init")}),this.counter.running=0,this._updateScreen()},_eventBuild:function(){var t=[];_.forEach(this.collection.models,function(e){t.push.apply(t,e.get("hids"))});var e=_.map(t,function(t){return Galaxy.currHistoryPanel.collection.getByHid(t)}),n=new Galaxy.currHistoryPanel.collection.constructor(e);n.historyId=Galaxy.currHistoryPanel.collection.historyId,Galaxy.currHistoryPanel.buildCollection(this.collectionType,n,!0),this.counter.running=0,this._updateScreen(),this._eventReset(),this.app.modal.hide()},_eventRemove:function(t){var e=t.get("status");"success"==e?this.counter.success--:"error"==e?this.counter.error--:this.counter.announce--,this.uploadbox.remove(t.id),this._updateScreen()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var t=this;this.ftp.append(new b.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(e){return t.uploadbox.add([{mode:"ftp",name:e.path,size:e.size,path:e.path}])},onremove:function(e){t.collection.remove(e)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(!(0==this.counter.announce||this.counter.running>0)){var t=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(e){"init"==e.get("status")&&(e.set("status","queued"),t.upload_size+=e.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this.uploadbox.start(),this._updateScreen()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),$(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){0==this.counter.running&&(this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this._updateScreen())},updateExtension:function(t,e){var n=this;this.collection.each(function(o){"init"!=o.get("status")||o.get("extension")!=n.options.default_extension&&e||o.set("extension",t)})},updateCollectionType:function(t){this.collectionType=t},updateGenome:function(t,e){var n=this;this.collection.each(function(o){"init"!=o.get("status")||o.get("genome")!=n.options.default_genome&&e||o.set("genome",t)})},_updateScreen:function(){var t="";t=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(t);var e=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,n=0==this.counter.running&&this.counter.announce>0,o=0==this.counter.running&&0==this.counter.announce&&this.counter.success>0&&0==this.counter.error,i=0==this.counter.running,s=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[e?"enable":"disable"](),this.btnStart[n?"enable":"disable"](),this.btnStart.$el[n?"addClass":"removeClass"]("btn-primary"),this.btnBuild[o?"enable":"disable"](),this.btnBuild.$el[o?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[i?"enable":"disable"](),this.btnFtp[i?"enable":"disable"](),this.btnCreate[i?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[s?"show":"hide"](),this.$(".upload-helper")[s?"hide":"show"]()},_uploadPercentage:function(t,e){return(this.upload_completed+t*e)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title-compressed">Collection Type:</span><span class="upload-footer-collection-type"/><span class="upload-footer-title-compressed">File Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title-compressed">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})});
\ No newline at end of file
diff --git a/static/scripts/mvc/upload/composite/composite-row.js b/static/scripts/mvc/upload/composite/composite-row.js
index 4247db13684..4d4ef2448ba 100644
--- a/static/scripts/mvc/upload/composite/composite-row.js
+++ b/static/scripts/mvc/upload/composite/composite-row.js
@@ -1 +1 @@
-define("mvc/upload/composite/composite-row",["exports","utils/utils","mvc/upload/upload-settings","mvc/upload/upload-ftp","mvc/ui/ui-popover","mvc/ui/ui-misc","mvc/ui/ui-select","utils/uploadbox"],function(e,t,s,i,o,n,a){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var d=l(t),h=l(s),r=l(i),u=l(o),c=l(n);l(a);e.default=Backbone.View.extend({status_classes:{init:"upload-mode fa fa-exclamation text-primary",ready:"upload-mode fa fa-check text-success",running:"upload-mode fa fa-spinner fa-spin",success:"upload-mode fa fa-check",error:"upload-mode fa fa-exclamation-triangle"},initialize:function(e,t){var s=this;this.app=e,this.model=t.model,this.setElement(this._template()),this.$source=this.$(".upload-source"),this.$settings=this.$(".upload-settings"),this.$status=this.$(".upload-status"),this.$text=this.$(".upload-text"),this.$text_content=this.$(".upload-text-content"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$file_name=this.$(".upload-file-name"),this.$file_desc=this.$(".upload-file-desc"),this.$file_size=this.$(".upload-file-size"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.uploadinput=this.$el.uploadinput({ondragover:function(){s.model.get("enabled")&&s.$el.addClass("warning")},ondragleave:function(){s.$el.removeClass("warning")},onchange:function(e){"running"!=s.model.get("status")&&e&&e.length>0&&(s.model.reset({file_data:e[0],file_name:e[0].name,file_size:e[0].size,file_mode:e[0].mode||"local"}),s._refreshReady())}}),this.button_menu=new c.default.ButtonMenu({icon:"fa-caret-down",title:"Select",pull:"left"}),this.$source.append(this.button_menu.$el),this.button_menu.addMenu({icon:"fa-laptop",title:"Choose local file",onclick:function(){s.uploadinput.dialog()}}),this.app.ftp_upload_site&&this.button_menu.addMenu({icon:"fa-folder-open-o",title:"Choose FTP file",onclick:function(){s._showFtp()}}),this.button_menu.addMenu({icon:"fa-edit",title:"Paste/Fetch data",onclick:function(){s.model.reset({file_mode:"new",file_name:"New File"})}}),this.ftp=new u.default.View({title:"Choose FTP file:",container:this.$source.find(".ui-button-menu"),placement:"right"}),this.settings=new u.default.View({title:"Upload configuration",container:this.$settings,placement:"bottom"}),this.$text_content.on("change input",function(e){s.model.set({url_paste:$(e.target).val(),file_size:$(e.target).val().length}),s._refreshReady()}),this.$settings.on("click",function(e){s._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.listenTo(this.model,"change:percentage",function(){s._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){s._refreshStatus()}),this.listenTo(this.model,"change:info",function(){s._refreshInfo()}),this.listenTo(this.model,"change:file_name",function(){s._refreshFileName()}),this.listenTo(this.model,"change:file_mode",function(){s._refreshMode()}),this.listenTo(this.model,"change:file_size",function(){s._refreshFileSize()}),this.listenTo(this.model,"remove",function(){s.remove()}),this.app.collection.on("reset",function(){s.remove()})},render:function(){this.$el.attr("id","upload-row-"+this.model.id),this.$file_name.html(_.escape(this.model.get("file_name")||"-")),this.$file_desc.html(this.model.get("file_desc")||"Unavailable"),this.$file_size.html(d.default.bytesToString(this.model.get("file_size"))),this.$status.removeClass().addClass(this.status_classes.init)},remove:function(){Backbone.View.prototype.remove.apply(this)},_refreshReady:function(){this.app.collection.each(function(e){e.set("status",e.get("file_size")>0&&"ready"||"init")})},_refreshMode:function(){"new"==this.model.get("file_mode")?(this.height=this.$el.height(),this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$text_content.val("").trigger("keyup")):(this.$el.height(this.height),this.$text.hide())},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));0!=e?this.$progress_bar.css({width:e+"%"}):(this.$progress_bar.addClass("no-transition"),this.$progress_bar.css({width:"0%"}),this.$progress_bar[0].offsetHeight,this.$progress_bar.removeClass("no-transition")),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$status.removeClass().addClass(this.status_classes[e]),this.model.set("enabled","running"!=e),this.$text_content.attr("disabled",!this.model.get("enabled")),this.$el.removeClass("success danger warning"),"running"!=e&&"ready"!=e||this.model.set("percentage",0),this.$source.find(".button")["running"==e?"addClass":"removeClass"]("disabled"),"success"==e&&(this.$el.addClass("success"),this.model.set("percentage",100),this.$percentage.html("100%")),"error"==e?(this.$el.addClass("danger"),this.model.set("percentage",0),this.$info_progress.hide(),this.$info_text.show()):(this.$info_progress.show(),this.$info_text.hide())},_refreshFileName:function(){this.$file_name.html(this.model.get("file_name")||"-")},_refreshFileSize:function(){this.$file_size.html(d.default.bytesToString(this.model.get("file_size")))},_showFtp:function(){if(this.ftp.visible)this.ftp.hide();else{var e=this;this.ftp.empty(),this.ftp.append(new r.default({ftp_upload_site:this.app.ftp_upload_site,onchange:function(t){e.ftp.hide(),"running"!=e.model.get("status")&&t&&(e.model.reset({file_mode:"ftp",file_name:t.path,file_size:t.size,file_path:t.path}),e._refreshReady())}}).$el),this.ftp.show()}},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(){return'<tr class="upload-row"><td><div class="upload-source"/><div class="upload-text-column"><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-status"/></td><td><div class="upload-file-desc upload-title"/></td><td><div class="upload-file-name upload-title"/></td><td><div class="upload-file-size upload-size"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td></tr>'}})});
\ No newline at end of file
+define("mvc/upload/composite/composite-row",["exports","utils/localization","utils/utils","mvc/upload/upload-settings","mvc/upload/upload-ftp","mvc/ui/ui-popover","mvc/ui/ui-misc","mvc/ui/ui-select","utils/uploadbox"],function(e,t,s,i,o,n,a,l){"use strict";function d(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var h=d(t),r=d(s),u=d(i),f=d(o),c=d(n),p=d(a);d(l);e.default=Backbone.View.extend({status_classes:{init:"upload-mode fa fa-exclamation text-primary",ready:"upload-mode fa fa-check text-success",running:"upload-mode fa fa-spinner fa-spin",success:"upload-mode fa fa-check",error:"upload-mode fa fa-exclamation-triangle"},initialize:function(e,t){var s=this;this.app=e,this.model=t.model,this.setElement(this._template()),this.$source=this.$(".upload-source"),this.$settings=this.$(".upload-settings"),this.$status=this.$(".upload-status"),this.$text=this.$(".upload-text"),this.$text_content=this.$(".upload-text-content"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$file_name=this.$(".upload-file-name"),this.$file_desc=this.$(".upload-file-desc"),this.$file_size=this.$(".upload-file-size"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.uploadinput=this.$el.uploadinput({ondragover:function(){s.model.get("enabled")&&s.$el.addClass("warning")},ondragleave:function(){s.$el.removeClass("warning")},onchange:function(e){"running"!=s.model.get("status")&&e&&e.length>0&&(s.model.reset({file_data:e[0],file_name:e[0].name,file_size:e[0].size,file_mode:e[0].mode||"local"}),s._refreshReady())}}),this.button_menu=new p.default.ButtonMenu({icon:"fa-caret-down",title:(0,h.default)("Select"),pull:"left"}),this.$source.append(this.button_menu.$el),this.button_menu.addMenu({icon:"fa-laptop",title:(0,h.default)("Choose local file"),onclick:function(){s.uploadinput.dialog()}}),this.app.ftp_upload_site&&this.button_menu.addMenu({icon:"fa-folder-open-o",title:(0,h.default)("Choose FTP file"),onclick:function(){s._showFtp()}}),this.button_menu.addMenu({icon:"fa-edit",title:"Paste/Fetch data",onclick:function(){s.model.reset({file_mode:"new",file_name:"New File"})}}),this.ftp=new c.default.View({title:"Choose FTP file:",container:this.$source.find(".ui-button-menu"),placement:"right"}),this.settings=new c.default.View({title:(0,h.default)("Upload configuration"),container:this.$settings,placement:"bottom"}),this.$text_content.on("change input",function(e){s.model.set({url_paste:$(e.target).val(),file_size:$(e.target).val().length}),s._refreshReady()}),this.$settings.on("click",function(e){s._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.listenTo(this.model,"change:percentage",function(){s._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){s._refreshStatus()}),this.listenTo(this.model,"change:info",function(){s._refreshInfo()}),this.listenTo(this.model,"change:file_name",function(){s._refreshFileName()}),this.listenTo(this.model,"change:file_mode",function(){s._refreshMode()}),this.listenTo(this.model,"change:file_size",function(){s._refreshFileSize()}),this.listenTo(this.model,"remove",function(){s.remove()}),this.app.collection.on("reset",function(){s.remove()})},render:function(){this.$el.attr("id","upload-row-"+this.model.id),this.$file_name.html(_.escape(this.model.get("file_name")||"-")),this.$file_desc.html(this.model.get("file_desc")||"Unavailable"),this.$file_size.html(r.default.bytesToString(this.model.get("file_size"))),this.$status.removeClass().addClass(this.status_classes.init)},remove:function(){Backbone.View.prototype.remove.apply(this)},_refreshReady:function(){this.app.collection.each(function(e){e.set("status",e.get("file_size")>0&&"ready"||"init")})},_refreshMode:function(){"new"==this.model.get("file_mode")?(this.height=this.$el.height(),this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$text_content.val("").trigger("keyup")):(this.$el.height(this.height),this.$text.hide())},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));0!=e?this.$progress_bar.css({width:e+"%"}):(this.$progress_bar.addClass("no-transition"),this.$progress_bar.css({width:"0%"}),this.$progress_bar[0].offsetHeight,this.$progress_bar.removeClass("no-transition")),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$status.removeClass().addClass(this.status_classes[e]),this.model.set("enabled","running"!=e),this.$text_content.attr("disabled",!this.model.get("enabled")),this.$el.removeClass("success danger warning"),"running"!=e&&"ready"!=e||this.model.set("percentage",0),this.$source.find(".button")["running"==e?"addClass":"removeClass"]("disabled"),"success"==e&&(this.$el.addClass("success"),this.model.set("percentage",100),this.$percentage.html("100%")),"error"==e?(this.$el.addClass("danger"),this.model.set("percentage",0),this.$info_progress.hide(),this.$info_text.show()):(this.$info_progress.show(),this.$info_text.hide())},_refreshFileName:function(){this.$file_name.html(this.model.get("file_name")||"-")},_refreshFileSize:function(){this.$file_size.html(r.default.bytesToString(this.model.get("file_size")))},_showFtp:function(){if(this.ftp.visible)this.ftp.hide();else{var e=this;this.ftp.empty(),this.ftp.append(new f.default({ftp_upload_site:this.app.ftp_upload_site,onchange:function(t){e.ftp.hide(),"running"!=e.model.get("status")&&t&&(e.model.reset({file_mode:"ftp",file_name:t.path,file_size:t.size,file_path:t.path}),e._refreshReady())}}).$el),this.ftp.show()}},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new u.default(this).$el),this.settings.show())},_template:function(){return'<tr class="upload-row"><td><div class="upload-source"/><div class="upload-text-column"><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-status"/></td><td><div class="upload-file-desc upload-title"/></td><td><div class="upload-file-name upload-title"/></td><td><div class="upload-file-size upload-size"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td></tr>'}})});
\ No newline at end of file
diff --git a/static/scripts/mvc/upload/composite/composite-view.js b/static/scripts/mvc/upload/composite/composite-view.js
index 679050aa208..b811d0a59d1 100644
--- a/static/scripts/mvc/upload/composite/composite-view.js
+++ b/static/scripts/mvc/upload/composite/composite-view.js
@@ -1 +1 @@
-define("mvc/upload/composite/composite-view",["exports","utils/utils","mvc/upload/upload-model","mvc/upload/composite/composite-row","mvc/upload/upload-extension","mvc/ui/ui-popover","mvc/ui/ui-select","mvc/ui/ui-misc"],function(t,e,n,o,s,i,l,a){"use strict";function c(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});c(e);var u=c(n),r=c(o),d=c(s),h=(c(i),c(l)),p=c(a);t.default=Backbone.View.extend({collection:new u.default.Collection,initialize:function(t){var e=this;this.app=t,this.options=t.options,this.list_extensions=t.list_extensions,this.list_genomes=t.list_genomes,this.ftp_upload_site=t.currentFtp(),this.setElement(this._template()),this.btnStart=new p.default.Button({title:"Start",onclick:function(){e._eventStart()}}),this.btnClose=new p.default.Button({title:"Close",onclick:function(){e.app.modal.hide()}}),_.each([this.btnStart,this.btnClose],function(t){e.$(".upload-buttons").prepend(t.$el)}),this.select_extension=new h.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:_.filter(this.list_extensions,function(t){return t.composite_files}),onchange:function(t){e.collection.reset();var n=_.findWhere(e.list_extensions,{id:t});n&&n.composite_files&&_.each(n.composite_files,function(t){e.collection.add({id:e.collection.size(),file_desc:t.description||t.name})})}}),this.$(".upload-footer-extension-info").on("click",function(t){new d.default({$el:$(t.target),title:e.select_extension.text(),extension:e.select_extension.value(),list:e.list_extensions,placement:"top"})}).on("mousedown",function(t){t.preventDefault()}),this.select_genome=new h.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome}),this.listenTo(this.collection,"add",function(t){e._eventAnnounce(t)}),this.listenTo(this.collection,"change add",function(){e.render()}),this.select_extension.options.onchange(this.select_extension.value()),this.render()},render:function(){var t=this.collection.first();t&&"running"==t.get("status")?(this.select_genome.disable(),this.select_extension.disable()):(this.select_genome.enable(),this.select_extension.enable()),this.collection.where({status:"ready"}).length==this.collection.length&&this.collection.length>0?(this.btnStart.enable(),this.btnStart.$el.addClass("btn-primary")):(this.btnStart.disable(),this.btnStart.$el.removeClass("btn-primary")),this.$(".upload-table")[this.collection.length>0?"show":"hide"]()},_eventAnnounce:function(t){var e=new r.default(this,{model:t});this.$(".upload-table > tbody:first").append(e.$el),this.$(".upload-table")[this.collection.length>0?"show":"hide"](),e.render()},_eventStart:function(){var t=this;this.collection.each(function(e){e.set({genome:t.select_genome.value(),extension:t.select_extension.value()})}),$.uploadpost({url:this.app.options.nginx_upload_path,data:this.app.toData(this.collection.filter()),success:function(e){t._eventSuccess(e)},error:function(e){t._eventError(e)},progress:function(e){t._eventProgress(e)}})},_eventProgress:function(t){this.collection.each(function(e){e.set("percentage",t)})},_eventSuccess:function(t){this.collection.each(function(t){t.set("status","success")}),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(t){this.collection.each(function(e){e.set({status:"error",info:t})})},_template:function(){return'<div class="upload-view-composite"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th/><th/><th>Description</th><th>Name</th><th>Size</th><th>Settings</th><th>Status</th></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Composite Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome/Build:</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})});
\ No newline at end of file
+define("mvc/upload/composite/composite-view",["exports","utils/localization","utils/utils","mvc/upload/upload-model","mvc/upload/composite/composite-row","mvc/upload/upload-extension","mvc/ui/ui-popover","mvc/ui/ui-select","mvc/ui/ui-misc"],function(t,e,o,n,s,i,l,a,c){"use strict";function u(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var r=u(e),d=(u(o),u(n)),h=u(s),p=u(i),f=(u(l),u(a)),v=u(c);t.default=Backbone.View.extend({collection:new d.default.Collection,initialize:function(t){var e=this;this.app=t,this.options=t.options,this.list_extensions=t.list_extensions,this.list_genomes=t.list_genomes,this.ftp_upload_site=t.currentFtp(),this.setElement(this._template()),this.btnStart=new v.default.Button({title:(0,r.default)("Start"),onclick:function(){e._eventStart()}}),this.btnClose=new v.default.Button({title:(0,r.default)("Close"),onclick:function(){e.app.modal.hide()}}),_.each([this.btnStart,this.btnClose],function(t){e.$(".upload-buttons").prepend(t.$el)}),this.select_extension=new f.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:_.filter(this.list_extensions,function(t){return t.composite_files}),onchange:function(t){e.collection.reset();var o=_.findWhere(e.list_extensions,{id:t});o&&o.composite_files&&_.each(o.composite_files,function(t){e.collection.add({id:e.collection.size(),file_desc:t.description||t.name})})}}),this.$(".upload-footer-extension-info").on("click",function(t){new p.default({$el:$(t.target),title:e.select_extension.text(),extension:e.select_extension.value(),list:e.list_extensions,placement:"top"})}).on("mousedown",function(t){t.preventDefault()}),this.select_genome=new f.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome}),this.listenTo(this.collection,"add",function(t){e._eventAnnounce(t)}),this.listenTo(this.collection,"change add",function(){e.render()}),this.select_extension.options.onchange(this.select_extension.value()),this.render()},render:function(){var t=this.collection.first();t&&"running"==t.get("status")?(this.select_genome.disable(),this.select_extension.disable()):(this.select_genome.enable(),this.select_extension.enable()),this.collection.where({status:"ready"}).length==this.collection.length&&this.collection.length>0?(this.btnStart.enable(),this.btnStart.$el.addClass("btn-primary")):(this.btnStart.disable(),this.btnStart.$el.removeClass("btn-primary")),this.$(".upload-table")[this.collection.length>0?"show":"hide"]()},_eventAnnounce:function(t){var e=new h.default(this,{model:t});this.$(".upload-table > tbody:first").append(e.$el),this.$(".upload-table")[this.collection.length>0?"show":"hide"](),e.render()},_eventStart:function(){var t=this;this.collection.each(function(e){e.set({genome:t.select_genome.value(),extension:t.select_extension.value()})}),$.uploadpost({url:this.app.options.nginx_upload_path,data:this.app.toData(this.collection.filter()),success:function(e){t._eventSuccess(e)},error:function(e){t._eventError(e)},progress:function(e){t._eventProgress(e)}})},_eventProgress:function(t){this.collection.each(function(e){e.set("percentage",t)})},_eventSuccess:function(t){this.collection.each(function(t){t.set("status","success")}),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(t){this.collection.each(function(e){e.set({status:"error",info:t})})},_template:function(){return'<div class="upload-view-composite"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th/><th/><th>Description</th><th>Name</th><th>Size</th><th>Settings</th><th>Status</th></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Composite Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome/Build:</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})});
\ No newline at end of file
diff --git a/static/scripts/mvc/upload/default/default-row.js b/static/scripts/mvc/upload/default/default-row.js
index f85fd655d9f..8b052ca38c9 100644
--- a/static/scripts/mvc/upload/default/default-row.js
+++ b/static/scripts/mvc/upload/default/default-row.js
@@ -1 +1 @@
-define("mvc/upload/default/default-row",["exports","utils/utils","mvc/upload/upload-model","mvc/upload/upload-settings","mvc/ui/ui-popover","mvc/ui/ui-select"],function(e,t,s,i,o,n){"use strict";function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var l=a(t),d=(a(s),a(i)),h=a(o),r=a(n);e.default=Backbone.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var s=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$settings=this.$(".upload-settings"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new h.default.View({title:"Upload configuration",container:this.$(".upload-settings"),placement:"bottom"});var i=this.app.select_genome.value(),o=this.app.select_extension.value();this.select_genome=new r.default.View({css:"upload-genome",data:s.app.list_genomes,container:this.$(".upload-genome"),value:i,onchange:function(e){s.model.set("genome",e)}}),this.select_extension=new r.default.View({css:"upload-extension",data:s.app.list_extensions,container:this.$(".upload-extension"),value:o,onchange:function(e){s.model.set("extension",e)}}),this.model.set({genome:i,extension:o}),this.$symbol.on("click",function(){s._removeRow()}),this.$(".upload-extension-info").on("click",function(e){s.app.showExtensionInfo({$el:$(e.target),title:s.select_extension.text(),extension:s.select_extension.value()})}).on("mousedown",function(e){e.preventDefault()}),this.$settings.on("click",function(e){s._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.$text_content.on("change input",function(e){s.model.set({url_paste:$(e.target).val(),file_size:$(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){s._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){s._refreshStatus()}),this.listenTo(this.model,"change:info",function(){s._refreshInfo()}),this.listenTo(this.model,"change:genome",function(){s._refreshGenome()}),this.listenTo(this.model,"change:extension",function(){s._refreshExtension()}),this.listenTo(this.model,"change:file_size",function(){s._refreshFileSize()})},render:function(){this._refreshType(),this._refreshPercentage(),this._refreshStatus(),this._refreshInfo(),this._refreshGenome(),this._refreshExtension(),this._refreshFileSize()},remove:function(){this.select_genome.remove(),this.select_extension.remove(),Backbone.View.prototype.remove.apply(this)},_refreshType:function(){var e=this.model.attributes;this.$title.html(_.escape(e.file_name)),this.$size.html(l.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshExtension:function(){this.select_extension.value(this.model.get("extension"))},_refreshGenome:function(){this.select_genome.value(this.model.get("genome"))},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),t?(this.select_genome.enable(),this.select_extension.enable()):(this.select_genome.disable(),this.select_extension.disable()),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(l.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new d.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-extension" style="float: left;"/>&nbsp;&nbsp<div class="upload-extension-info upload-icon-button fa fa-search"/></td><td><div class="upload-genome"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})});
\ No newline at end of file
+define("mvc/upload/default/default-row",["exports","utils/localization","utils/utils","mvc/upload/upload-model","mvc/upload/upload-settings","mvc/ui/ui-popover","mvc/ui/ui-select"],function(e,t,s,i,o,n,a){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var d=l(t),h=l(s),r=(l(i),l(o)),c=l(n),u=l(a);e.default=Backbone.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var s=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$settings=this.$(".upload-settings"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new c.default.View({title:(0,d.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});var i=this.app.select_genome.value(),o=this.app.select_extension.value();this.select_genome=new u.default.View({css:"upload-genome",data:s.app.list_genomes,container:this.$(".upload-genome"),value:i,onchange:function(e){s.model.set("genome",e)}}),this.select_extension=new u.default.View({css:"upload-extension",data:s.app.list_extensions,container:this.$(".upload-extension"),value:o,onchange:function(e){s.model.set("extension",e)}}),this.model.set({genome:i,extension:o}),this.$symbol.on("click",function(){s._removeRow()}),this.$(".upload-extension-info").on("click",function(e){s.app.showExtensionInfo({$el:$(e.target),title:s.select_extension.text(),extension:s.select_extension.value()})}).on("mousedown",function(e){e.preventDefault()}),this.$settings.on("click",function(e){s._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.$text_content.on("change input",function(e){s.model.set({url_paste:$(e.target).val(),file_size:$(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){s._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){s._refreshStatus()}),this.listenTo(this.model,"change:info",function(){s._refreshInfo()}),this.listenTo(this.model,"change:genome",function(){s._refreshGenome()}),this.listenTo(this.model,"change:extension",function(){s._refreshExtension()}),this.listenTo(this.model,"change:file_size",function(){s._refreshFileSize()})},render:function(){this._refreshType(),this._refreshPercentage(),this._refreshStatus(),this._refreshInfo(),this._refreshGenome(),this._refreshExtension(),this._refreshFileSize()},remove:function(){this.select_genome.remove(),this.select_extension.remove(),Backbone.View.prototype.remove.apply(this)},_refreshType:function(){var e=this.model.attributes;this.$title.html(_.escape(e.file_name)),this.$size.html(h.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshExtension:function(){this.select_extension.value(this.model.get("extension"))},_refreshGenome:function(){this.select_genome.value(this.model.get("genome"))},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),t?(this.select_genome.enable(),this.select_extension.enable()):(this.select_genome.disable(),this.select_extension.disable()),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(h.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new r.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-extension" style="float: left;"/>&nbsp;&nbsp<div class="upload-extension-info upload-icon-button fa fa-search"/></td><td><div class="upload-genome"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})});
\ No newline at end of file
diff --git a/static/scripts/mvc/upload/default/default-view.js b/static/scripts/mvc/upload/default/default-view.js
index 2f4883cbf72..2d442bb0849 100644
--- a/static/scripts/mvc/upload/default/default-view.js
+++ b/static/scripts/mvc/upload/default/default-view.js
@@ -1 +1 @@
-define("mvc/upload/default/default-view",["exports","utils/utils","mvc/upload/upload-model","mvc/upload/default/default-row","mvc/upload/upload-ftp","mvc/upload/upload-extension","mvc/ui/ui-popover","mvc/ui/ui-select","mvc/ui/ui-misc","mvc/lazy/lazy-limited","utils/uploadbox"],function(t,e,n,o,i,s,a,l,u,c){"use strict";function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});r(e);var h=r(n),d=r(o),p=r(i),f=r(s),b=r(a),v=r(l),g=r(u),m=r(c);t.default=Backbone.View.extend({upload_size:0,collection:new h.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(t){var e=this;this.app=t,this.options=t.options,this.list_extensions=t.list_extensions,this.list_genomes=t.list_genomes,this.ui_button=t.ui_button,this.ftp_upload_site=t.currentFtp(),this.setElement(this._template()),this.$uploadbox=this.$(".upload-box"),this.$uploadtable=this.$(".upload-table"),this.btnLocal=new g.default.Button({id:"btn-local",title:"Choose local file",onclick:function(){e.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new g.default.Button({id:"btn-ftp",title:"Choose FTP file",onclick:function(){e._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new g.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){e._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new g.default.Button({id:"btn-start",title:"Start",onclick:function(){e._eventStart()}}),this.btnStop=new g.default.Button({id:"btn-stop",title:"Pause",onclick:function(){e._eventStop()}}),this.btnReset=new g.default.Button({id:"btn-reset",title:"Reset",onclick:function(){e._eventReset()}}),this.btnClose=new g.default.Button({id:"btn-close",title:"Close",onclick:function(){e.app.modal.hide()}}),_.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnClose],function(t){e.$(".upload-buttons").prepend(t.$el)}),this.uploadbox=this.$uploadbox.uploadbox({url:this.app.options.nginx_upload_path,announce:function(t,n){e._eventAnnounce(t,n)},initialize:function(t){return e.app.toData([e.collection.get(t)],e.history_id)},progress:function(t,n){e._eventProgress(t,n)},success:function(t,n){e._eventSuccess(t,n)},error:function(t,n){e._eventError(t,n)},complete:function(){e._eventComplete()},ondragover:function(){e.$uploadbox.addClass("highlight")},ondragleave:function(){e.$uploadbox.removeClass("highlight")}}),this.ftp=new b.default.View({title:"FTP files",container:this.btnFtp.$el}),this.select_extension=new v.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:_.filter(this.list_extensions,function(t){return!t.composite_files}),value:this.options.default_extension,onchange:function(t){e._changeExtension(t)}}),this.$(".upload-footer-extension-info").on("click",function(t){new f.default({$el:$(t.target),title:e.select_extension.text(),extension:e.select_extension.value(),list:e.list_extensions,placement:"top"})}).on("mousedown",function(t){t.preventDefault()}),this.select_genome=new v.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(t){e._changeGenome(t)}}),this.loader=new m.default({$container:this.$uploadbox,collection:this.collection,new_content:function(t){var n=new d.default(e,{model:t});return e.$uploadtable.find("> tbody:first").append(n.$el),n.render(),n}}),this.collection.on("remove",function(t){e._eventRemove(t)}),this.render()},render:function(){var t="";t=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(t);var e=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,n=0==this.counter.running&&this.counter.announce>0,o=0==this.counter.running,i=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[e?"enable":"disable"](),this.btnStart[n?"enable":"disable"](),this.btnStart.$el[n?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[o?"enable":"disable"](),this.btnFtp[o?"enable":"disable"](),this.btnCreate[o?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[i?"show":"hide"](),this.$(".upload-helper")[i?"hide":"show"]()},_eventAnnounce:function(t,e){this.counter.announce++;var n=new h.default.Model({id:t,file_name:e.name,file_size:e.size,file_mode:e.mode||"local",file_path:e.path,file_data:e});this.render(),this.collection.add(n)},_eventProgress:function(t,e){var n=this.collection.get(t);n.set("percentage",e),this.ui_button.model.set("percentage",this._uploadPercentage(e,n.get("file_size")))},_eventSuccess:function(t,e){var n=this.collection.get(t);n.set({percentage:100,status:"success"}),this.ui_button.model.set("percentage",this._uploadPercentage(100,n.get("file_size"))),this.upload_completed+=100*n.get("file_size"),this.counter.announce--,this.counter.success++,this.render(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(t,e){var n=this.collection.get(t);n.set({percentage:100,status:"error",info:e}),this.ui_button.model.set({percentage:this._uploadPercentage(100,n.get("file_size")),status:"danger"}),this.upload_completed+=100*n.get("file_size"),this.counter.announce--,this.counter.error++,this.render()},_eventComplete:function(){this.collection.each(function(t){"queued"==t.get("status")&&t.set("status","init")}),this.counter.running=0,this.render()},_eventRemove:function(t){var e=t.get("status");"success"==e?this.counter.success--:"error"==e?this.counter.error--:this.counter.announce--,this.uploadbox.remove(t.id),this.render()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var t=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(e){return t.uploadbox.add([{mode:"ftp",name:e.path,size:e.size,path:e.path}])},onremove:function(e){t.collection.remove(e)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(0!=this.counter.announce&&0==this.counter.running){var t=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(e){"init"==e.get("status")&&(e.set("status","queued"),t.upload_size+=e.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this._uploadFtp(),this.uploadbox.start(),this.render()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),$(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){if(0==this.counter.running){this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this.render()}},_changeExtension:function(t,e){var n=this;this.collection.each(function(o){"init"!=o.get("status")||o.get("extension")!=n.options.default_extension&&e||o.set("extension",t)})},_changeGenome:function(t,e){var n=this;this.collection.each(function(o){"init"!=o.get("status")||o.get("genome")!=n.options.default_genome&&e||o.set("genome",t)})},_uploadFtp:function(){var t=this,e=[];this.collection.each(function(n){"queued"==n.get("status")&&"ftp"==n.get("file_mode")&&(t.uploadbox.remove(n.id),e.push(n))}),e.length>0&&$.uploadpost({data:this.app.toData(e),url:this.app.options.nginx_upload_path,success:function(n){_.each(e,function(e){t._eventSuccess(e.id)})},error:function(n){_.each(e,function(e){t._eventError(e.id,n)})}})},_uploadPercentage:function(t,e){return(this.upload_completed+t*e)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Type</th><th>Genome</th><th>Settings</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Type (set all):</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})});
\ No newline at end of file
+define("mvc/upload/default/default-view",["exports","utils/localization","utils/utils","mvc/upload/upload-model","mvc/upload/default/default-row","mvc/upload/upload-ftp","mvc/upload/upload-extension","mvc/ui/ui-popover","mvc/ui/ui-select","mvc/ui/ui-misc","mvc/lazy/lazy-limited","utils/uploadbox"],function(t,e,n,o,i,s,a,l,u,c,r){"use strict";function d(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var h=d(e),p=(d(n),d(o)),f=d(i),b=d(s),v=d(a),g=d(l),m=d(u),x=d(c),w=d(r);t.default=Backbone.View.extend({upload_size:0,collection:new p.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(t){var e=this;this.app=t,this.options=t.options,this.list_extensions=t.list_extensions,this.list_genomes=t.list_genomes,this.ui_button=t.ui_button,this.ftp_upload_site=t.currentFtp(),this.setElement(this._template()),this.$uploadbox=this.$(".upload-box"),this.$uploadtable=this.$(".upload-table"),this.btnLocal=new x.default.Button({id:"btn-local",title:(0,h.default)("Choose local file"),onclick:function(){e.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new x.default.Button({id:"btn-ftp",title:(0,h.default)("Choose FTP file"),onclick:function(){e._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){e._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,h.default)("Start"),onclick:function(){e._eventStart()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,h.default)("Pause"),onclick:function(){e._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,h.default)("Reset"),onclick:function(){e._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,h.default)("Close"),onclick:function(){e.app.modal.hide()}}),_.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnClose],function(t){e.$(".upload-buttons").prepend(t.$el)}),this.uploadbox=this.$uploadbox.uploadbox({url:this.app.options.nginx_upload_path,announce:function(t,n){e._eventAnnounce(t,n)},initialize:function(t){return e.app.toData([e.collection.get(t)],e.history_id)},progress:function(t,n){e._eventProgress(t,n)},success:function(t,n){e._eventSuccess(t,n)},error:function(t,n){e._eventError(t,n)},complete:function(){e._eventComplete()},ondragover:function(){e.$uploadbox.addClass("highlight")},ondragleave:function(){e.$uploadbox.removeClass("highlight")}}),this.ftp=new g.default.View({title:(0,h.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new m.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:_.filter(this.list_extensions,function(t){return!t.composite_files}),value:this.options.default_extension,onchange:function(t){e._changeExtension(t)}}),this.$(".upload-footer-extension-info").on("click",function(t){new v.default({$el:$(t.target),title:e.select_extension.text(),extension:e.select_extension.value(),list:e.list_extensions,placement:"top"})}).on("mousedown",function(t){t.preventDefault()}),this.select_genome=new m.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(t){e._changeGenome(t)}}),this.loader=new w.default({$container:this.$uploadbox,collection:this.collection,new_content:function(t){var n=new f.default(e,{model:t});return e.$uploadtable.find("> tbody:first").append(n.$el),n.render(),n}}),this.collection.on("remove",function(t){e._eventRemove(t)}),this.render()},render:function(){var t="";t=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(t);var e=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,n=0==this.counter.running&&this.counter.announce>0,o=0==this.counter.running,i=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[e?"enable":"disable"](),this.btnStart[n?"enable":"disable"](),this.btnStart.$el[n?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[o?"enable":"disable"](),this.btnFtp[o?"enable":"disable"](),this.btnCreate[o?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[i?"show":"hide"](),this.$(".upload-helper")[i?"hide":"show"]()},_eventAnnounce:function(t,e){this.counter.announce++;var n=new p.default.Model({id:t,file_name:e.name,file_size:e.size,file_mode:e.mode||"local",file_path:e.path,file_data:e});this.render(),this.collection.add(n)},_eventProgress:function(t,e){var n=this.collection.get(t);n.set("percentage",e),this.ui_button.model.set("percentage",this._uploadPercentage(e,n.get("file_size")))},_eventSuccess:function(t,e){var n=this.collection.get(t);n.set({percentage:100,status:"success"}),this.ui_button.model.set("percentage",this._uploadPercentage(100,n.get("file_size"))),this.upload_completed+=100*n.get("file_size"),this.counter.announce--,this.counter.success++,this.render(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(t,e){var n=this.collection.get(t);n.set({percentage:100,status:"error",info:e}),this.ui_button.model.set({percentage:this._uploadPercentage(100,n.get("file_size")),status:"danger"}),this.upload_completed+=100*n.get("file_size"),this.counter.announce--,this.counter.error++,this.render()},_eventComplete:function(){this.collection.each(function(t){"queued"==t.get("status")&&t.set("status","init")}),this.counter.running=0,this.render()},_eventRemove:function(t){var e=t.get("status");"success"==e?this.counter.success--:"error"==e?this.counter.error--:this.counter.announce--,this.uploadbox.remove(t.id),this.render()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var t=this;this.ftp.append(new b.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(e){return t.uploadbox.add([{mode:"ftp",name:e.path,size:e.size,path:e.path}])},onremove:function(e){t.collection.remove(e)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(0!=this.counter.announce&&0==this.counter.running){var t=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(e){"init"==e.get("status")&&(e.set("status","queued"),t.upload_size+=e.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this._uploadFtp(),this.uploadbox.start(),this.render()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),$(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){if(0==this.counter.running){this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this.render()}},_changeExtension:function(t,e){var n=this;this.collection.each(function(o){"init"!=o.get("status")||o.get("extension")!=n.options.default_extension&&e||o.set("extension",t)})},_changeGenome:function(t,e){var n=this;this.collection.each(function(o){"init"!=o.get("status")||o.get("genome")!=n.options.default_genome&&e||o.set("genome",t)})},_uploadFtp:function(){var t=this,e=[];this.collection.each(function(n){"queued"==n.get("status")&&"ftp"==n.get("file_mode")&&(t.uploadbox.remove(n.id),e.push(n))}),e.length>0&&$.uploadpost({data:this.app.toData(e),url:this.app.options.nginx_upload_path,success:function(n){_.each(e,function(e){t._eventSuccess(e.id)})},error:function(n){_.each(e,function(e){t._eventError(e.id,n)})}})},_uploadPercentage:function(t,e){return(this.upload_completed+t*e)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Type</th><th>Genome</th><th>Settings</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Type (set all):</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})});
\ No newline at end of file
diff --git a/static/scripts/mvc/upload/upload-button.js b/static/scripts/mvc/upload/upload-button.js
index 6f1063ffc47..256e3ffb44f 100644
--- a/static/scripts/mvc/upload/upload-button.js
+++ b/static/scripts/mvc/upload/upload-button.js
@@ -1 +1 @@
-define("mvc/upload/upload-button",["exports"],function(t){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var e=Backbone.View.extend({initialize:function(t){var e=this;this.model=t&&t.model||new Backbone.Model({icon:"fa-upload",tooltip:"Download from URL or upload files from disk",label:"Load Data",percentage:0,status:"",onunload:function(){},onclick:function(){}}).set(t),this.setElement(this._template()),this.$progress=this.$(".progress-bar"),this.listenTo(this.model,"change",this.render,this),this.render(),$(window).on("beforeunload",function(){return e.model.get("onunload")()})},render:function(){var t=this.model.attributes;this.$el.off("click").on("click",function(e){t.onclick(e)}).tooltip({title:this.model.get("tooltip"),placement:"bottom"}),this.$progress.removeClass().addClass("progress-bar").addClass("progress-bar-notransition").addClass(""!=t.status&&"progress-bar-"+t.status).css({width:t.percentage+"%"})},_template:function(){return'<div class="upload-button"><div class="progress"><div class="progress-bar"/><a class="panel-header-button" href="javascript:void(0)" id="tool-panel-upload-button"><span class="fa fa-upload"/></a></div></div>'}});t.default={View:e}});
\ No newline at end of file
+define("mvc/upload/upload-button",["exports","utils/localization"],function(t,e){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var o=function(t){return t&&t.__esModule?t:{default:t}}(e),s=Backbone.View.extend({initialize:function(t){var e=this;this.model=t&&t.model||new Backbone.Model({icon:"fa-upload",tooltip:(0,o.default)("Download from URL or upload files from disk"),label:"Load Data",percentage:0,status:"",onunload:function(){},onclick:function(){}}).set(t),this.setElement(this._template()),this.$progress=this.$(".progress-bar"),this.listenTo(this.model,"change",this.render,this),this.render(),$(window).on("beforeunload",function(){return e.model.get("onunload")()})},render:function(){var t=this.model.attributes;this.$el.off("click").on("click",function(e){t.onclick(e)}).tooltip({title:this.model.get("tooltip"),placement:"bottom"}),this.$progress.removeClass().addClass("progress-bar").addClass("progress-bar-notransition").addClass(""!=t.status&&"progress-bar-"+t.status).css({width:t.percentage+"%"})},_template:function(){return'<div class="upload-button"><div class="progress"><div class="progress-bar"/><a class="panel-header-button" href="javascript:void(0)" id="tool-panel-upload-button"><span class="fa fa-upload"/></a></div></div>'}});t.default={View:s}});
\ No newline at end of file
diff --git a/static/scripts/mvc/upload/upload-view.js b/static/scripts/mvc/upload/upload-view.js
index b9902d96803..826f0774a96 100644
--- a/static/scripts/mvc/upload/upload-view.js
+++ b/static/scripts/mvc/upload/upload-view.js
@@ -1 +1 @@
-define("mvc/upload/upload-view",["exports","utils/utils","mvc/ui/ui-modal","mvc/ui/ui-tabs","mvc/upload/upload-button","mvc/upload/default/default-view","mvc/upload/composite/composite-view","mvc/upload/collection/collection-view"],function(t,e,i,o,s,l,n,a){"use strict";function u(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var r=u(e),d=u(i),c=u(o),f=u(s),p=u(l),_=u(n),h=u(a);t.default=Backbone.View.extend({options:{nginx_upload_path:"",ftp_upload_site:"n/a",default_genome:"?",default_extension:"auto",height:500,width:900,auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be.  You can also upload compressed files, which will automatically be decompressed."}},list_extensions:[],list_genomes:[],initialize:function(t){e=this;this.options=r.default.merge(t,this.options),this.ui_button=new f.default.View({onclick:function(t){t.preventDefault(),e.show()},onunload:function(){var t=e.ui_button.model.get("percentage",0);if(t>0&&t<100)return"Several uploads are queued."}}),this.setElement(this.ui_button.$el);var e=this;r.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){for(var i in t)e.list_extensions.push({id:t[i].extension,text:t[i].extension,description:t[i].description,description_url:t[i].description_url,composite_files:t[i].composite_files});e.list_extensions.sort(function(t,e){var i=t.text&&t.text.toLowerCase(),o=e.text&&e.text.toLowerCase();return i>o?1:i<o?-1:0}),e.options.datatypes_disable_auto||e.list_extensions.unshift(e.options.auto)}}),r.default.get({url:Galaxy.root+"api/genomes",success:function(t){for(var i in t)e.list_genomes.push({id:t[i][1],text:t[i][0]});e.list_genomes.sort(function(t,i){return t.id==e.options.default_genome?-1:i.id==e.options.default_genome?1:t.text>i.text?1:t.text<i.text?-1:0})}})},show:function(){var t=this;Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.model?(this.current_user=Galaxy.user.id,this.modal||(this.tabs=new c.default.View,this.default_view=new p.default(this),this.tabs.add({id:"regular",title:"Regular",$el:this.default_view.$el}),this.composite_view=new _.default(this),this.tabs.add({id:"composite",title:"Composite",$el:this.composite_view.$el}),this.collection_view=new h.default(this),this.tabs.add({id:"collection",title:"Collection",$el:this.collection_view.$el}),this.modal=new d.default.View({title:"Download from web or upload from disk",body:this.tabs.$el,height:this.options.height,width:this.options.width,closing_events:!0,title_separator:!1})),this.modal.show()):window.setTimeout(function(){t.show()},500)},currentHistory:function(){return this.current_user&&Galaxy.currHistoryPanel.model.get("id")},currentFtp:function(){return this.current_user&&this.options.ftp_upload_site},toData:function(t,e){var i={payload:{tool_id:"upload1",history_id:e||this.currentHistory(),inputs:{}},files:[],error_message:null};if(t&&t.length>0){var o={file_count:t.length,dbkey:t[0].get("genome","?"),file_type:t[0].get("extension","auto")};for(var s in t){var l=t[s];if(l.set("status","running"),!(l.get("file_size")>0)){i.error_message="Upload content incomplete.",l.set("status","error"),l.set("info",i.error_message);break}var n="files_"+s+"|";switch(o[n+"type"]="upload_dataset",o[n+"space_to_tab"]=l.get("space_to_tab")&&"Yes"||null,o[n+"to_posix_lines"]=l.get("to_posix_lines")&&"Yes"||null,o[n+"dbkey"]=l.get("genome",null),o[n+"file_type"]=l.get("extension",null),l.get("file_mode")){case"new":o[n+"url_paste"]=l.get("url_paste");break;case"ftp":o[n+"ftp_files"]=l.get("file_path");break;case"local":i.files.push({name:n+"file_data",file:l.get("file_data")})}}i.payload.inputs=JSON.stringify(o)}return i}})});
\ No newline at end of file
+define("mvc/upload/upload-view",["exports","utils/localization","utils/utils","mvc/ui/ui-modal","mvc/ui/ui-tabs","mvc/upload/upload-button","mvc/upload/default/default-view","mvc/upload/composite/composite-view","mvc/upload/collection/collection-view"],function(t,e,i,o,s,l,n,a,u){"use strict";function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var d=r(e),c=r(i),f=r(o),p=r(s),_=r(l),h=r(n),m=r(a),g=r(u);t.default=Backbone.View.extend({options:{nginx_upload_path:"",ftp_upload_site:"n/a",default_genome:"?",default_extension:"auto",height:500,width:900,auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be.  You can also upload compressed files, which will automatically be decompressed."}},list_extensions:[],list_genomes:[],initialize:function(t){e=this;this.options=c.default.merge(t,this.options),this.ui_button=new _.default.View({onclick:function(t){t.preventDefault(),e.show()},onunload:function(){var t=e.ui_button.model.get("percentage",0);if(t>0&&t<100)return"Several uploads are queued."}}),this.setElement(this.ui_button.$el);var e=this;c.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(t){for(var i in t)e.list_extensions.push({id:t[i].extension,text:t[i].extension,description:t[i].description,description_url:t[i].description_url,composite_files:t[i].composite_files});e.list_extensions.sort(function(t,e){var i=t.text&&t.text.toLowerCase(),o=e.text&&e.text.toLowerCase();return i>o?1:i<o?-1:0}),e.options.datatypes_disable_auto||e.list_extensions.unshift(e.options.auto)}}),c.default.get({url:Galaxy.root+"api/genomes",success:function(t){for(var i in t)e.list_genomes.push({id:t[i][1],text:t[i][0]});e.list_genomes.sort(function(t,i){return t.id==e.options.default_genome?-1:i.id==e.options.default_genome?1:t.text>i.text?1:t.text<i.text?-1:0})}})},show:function(){var t=this;Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.model?(this.current_user=Galaxy.user.id,this.modal||(this.tabs=new p.default.View,this.default_view=new h.default(this),this.tabs.add({id:"regular",title:(0,d.default)("Regular"),$el:this.default_view.$el}),this.composite_view=new m.default(this),this.tabs.add({id:"composite",title:(0,d.default)("Composite"),$el:this.composite_view.$el}),this.collection_view=new g.default(this),this.tabs.add({id:"collection",title:(0,d.default)("Collection"),$el:this.collection_view.$el}),this.modal=new f.default.View({title:(0,d.default)("Download from web or upload from disk"),body:this.tabs.$el,height:this.options.height,width:this.options.width,closing_events:!0,title_separator:!1})),this.modal.show()):window.setTimeout(function(){t.show()},500)},currentHistory:function(){return this.current_user&&Galaxy.currHistoryPanel.model.get("id")},currentFtp:function(){return this.current_user&&this.options.ftp_upload_site},toData:function(t,e){var i={payload:{tool_id:"upload1",history_id:e||this.currentHistory(),inputs:{}},files:[],error_message:null};if(t&&t.length>0){var o={file_count:t.length,dbkey:t[0].get("genome","?"),file_type:t[0].get("extension","auto")};for(var s in t){var l=t[s];if(l.set("status","running"),!(l.get("file_size")>0)){i.error_message="Upload content incomplete.",l.set("status","error"),l.set("info",i.error_message);break}var n="files_"+s+"|";switch(o[n+"type"]="upload_dataset",o[n+"space_to_tab"]=l.get("space_to_tab")&&"Yes"||null,o[n+"to_posix_lines"]=l.get("to_posix_lines")&&"Yes"||null,o[n+"dbkey"]=l.get("genome",null),o[n+"file_type"]=l.get("extension",null),l.get("file_mode")){case"new":o[n+"url_paste"]=l.get("url_paste");break;case"ftp":o[n+"ftp_files"]=l.get("file_path");break;case"local":i.files.push({name:n+"file_data",file:l.get("file_data")})}}i.payload.inputs=JSON.stringify(o)}return i}})});
\ No newline at end of file
diff --git a/static/scripts/mvc/user/user-custom-builds.js b/static/scripts/mvc/user/user-custom-builds.js
index 43aebc464b5..5fd1ba28ed1 100644
--- a/static/scripts/mvc/user/user-custom-builds.js
+++ b/static/scripts/mvc/user/user-custom-builds.js
@@ -1 +1 @@
-define("mvc/user/user-custom-builds",["exports","utils/utils","mvc/ui/ui-misc","mvc/form/form-view","mvc/ui/ui-table"],function(e,t,a,l,i){"use strict";function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});s(t);var n=s(a),o=s(l),r=s(i),d=Backbone.Collection.extend({comparator:function(e,t){return e=e.get("name"),t=t.get("name"),e>t?1:e<t?-1:0}}),u=Backbone.View.extend({initialize:function(e){var t=this,a=Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.model.id;this.model=new Backbone.Model,this.model.url=Galaxy.root+"api/histories/"+a+"/custom_builds_metadata",this.collection=new d,this.collection.url=Galaxy.root+"api/users/"+Galaxy.user.id+"/custom_builds",this.message=new n.default.Message({}),this.installed_builds=new n.default.Select.View({optional:!0,onchange:function(){t.installed_builds.value(null)},empty_text:"List of available builds:",error_text:"No system installed builds available."}),this.table=new r.default.View({cls:"grid",selectable:!1}),this.table.addHeader("Name"),this.table.addHeader("Key"),this.table.addHeader("Number of chroms/contigs"),this.table.addHeader(""),this.table.appendHeader(),this.setElement($("<div/>").append($("<h4/>").text("Current Custom Builds")).append(this.table.$el).append(this.$installed=$("<div/>").append($("<h4/>").text("System Installed Builds").addClass("ui-margin-top")).append(this.installed_builds.$el)).append($("<h4/>").text("Add a Custom Build").addClass("ui-margin-top")).append($("<span/>").addClass("ui-column").append($("<div/>").addClass("ui-column-left").append(this.message.$el).append(this.$form=$("<div/>").addClass("ui-margin-top"))).append(this.$help=$("<div/>").addClass("ui-column-right")))),this.listenTo(this.collection,"add remove reset",function(){t._renderTable()}),this.listenTo(this.model,"change",function(){t._renderForm()}),this.collection.fetch(),this.model.fetch()},render:function(){this._renderTable(),this._renderForm()},_renderTable:function(){var e=this;this.table.delAll(),this.collection.sort(),this.collection.each(function(t){e.table.add(t.get("name")),e.table.add(t.id),e.table.add(void 0!==t.get("count")?t.get("count"):"Processing..."),e.table.add(new n.default.ButtonIcon({icon:"fa-trash-o",cls:"ui-button-icon-plain",tooltip:"Delete custom build.",onclick:function(){t.destroy()}}).$el),e.table.append(t.id)})},_renderForm:function(){var e=this,t=new o.default({inputs:[{type:"text",name:"name",label:"Name",help:"Specify a build name e.g. Hamster."},{type:"text",name:"id",label:"Key",help:"Specify a build key e.g. hamster_v1."},{name:"len",type:"conditional",test_param:{name:"type",label:"Definition",help:"Provide the data source.",type:"select",value:"fasta",data:[{value:"fasta",label:"FASTA-file from history"},{value:"file",label:"Len-file from disk"},{value:"text",label:"Len-file by copy/paste"}]},cases:[{value:"fasta",inputs:[{type:"select",name:"value",label:"FASTA-file",data:this.model.get("fasta_hdas")}]},{value:"file",inputs:[{type:"upload",name:"value",label:"Len-file",data:this.model.get("len_hdas")}]},{value:"text",inputs:[{type:"text",area:!0,name:"value",label:"Edit/Paste"}]}]}],buttons:{save:new n.default.Button({icon:"fa-save",tooltip:"Create new Build",title:"Save",cls:"btn btn-primary ui-clear-float",onclick:function(){var a=t.data.create();a.id&&a.name?e.collection.create(a,{wait:!0,success:function(t){t.get("message")?e.message.update({message:t.get("message"),status:"warning"}):e.message.update({message:"Successfully added a new custom build.",status:"success"})},error:function(t,a){var l=a&&a.responseJSON&&a.responseJSON.err_msg;e.message.update({message:l||"Failed to create custom build.",status:"danger"})}}):e.message.update({message:"All inputs are required.",status:"danger"})}})},onchange:function(){var a=t.data.match("len|type");if(a){var l=t.field_list[a];e._renderHelp(l.value())}}});this.$form.empty().append(t.$el);var a=this.model.get("installed_builds");a&&a.length?(this.$installed.show(),this.installed_builds.update(this.model.get("installed_builds"))):this.$installed.hide(),this._renderHelp("fasta")},_renderHelp:function(e){this.$help.empty().addClass("alert alert-info").html("fasta"==e?this._templateFasta():this._templateLen())},_templateLen:function(){return"<h4>Length Format</h4><p>The length format is two-column, separated by whitespace, of the form:<pre>chrom/contig   length of chrom/contig</pre></p><p>For example, the first few entries of <em>mm9.len</em> are as follows:<pre>chr1    197195432\nchr2    181748087\nchr3    159599783\nchr4    155630120\nchr5    152537259</pre></p><p>Trackster uses this information to populate the select box for chrom/contig, andto set the maximum basepair of the track browser. You may either upload a .len fileof this format (Len File option), or directly enter the information into the box (Len Entry option).</p>"},_templateFasta:function(){return"<h4>FASTA format</h4><p>This is a multi-fasta file from your current history that provides the genomesequences for each chromosome/contig in your build.</p><p>Here is a snippet from an example multi-fasta file:<pre>>chr1\nATTATATATAAGACCACAGAGAGAATATTTTGCCCGG...\n\n>chr2\nGGCGGCCGCGGCGATATAGAACTACTCATTATATATA...\n\n...</pre></p>"}});e.default={View:u}});
\ No newline at end of file
+define("mvc/user/user-custom-builds",["exports","utils/localization","utils/utils","mvc/ui/ui-misc","mvc/form/form-view","mvc/ui/ui-table"],function(e,t,a,l,i,s){"use strict";function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var o=n(t),d=(n(a),n(l)),r=n(i),u=n(s),c=Backbone.Collection.extend({comparator:function(e,t){return e=e.get("name"),t=t.get("name"),e>t?1:e<t?-1:0}}),m=Backbone.View.extend({initialize:function(e){var t=this,a=Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.model.id;this.model=new Backbone.Model,this.model.url=Galaxy.root+"api/histories/"+a+"/custom_builds_metadata",this.collection=new c,this.collection.url=Galaxy.root+"api/users/"+Galaxy.user.id+"/custom_builds",this.message=new d.default.Message({}),this.installed_builds=new d.default.Select.View({optional:!0,onchange:function(){t.installed_builds.value(null)},empty_text:"List of available builds:",error_text:"No system installed builds available."}),this.table=new u.default.View({cls:"grid",selectable:!1}),this.table.addHeader("Name"),this.table.addHeader("Key"),this.table.addHeader("Number of chroms/contigs"),this.table.addHeader(""),this.table.appendHeader(),this.setElement($("<div/>").append($("<h4/>").text("Current Custom Builds")).append(this.table.$el).append(this.$installed=$("<div/>").append($("<h4/>").text("System Installed Builds").addClass("ui-margin-top")).append(this.installed_builds.$el)).append($("<h4/>").text("Add a Custom Build").addClass("ui-margin-top")).append($("<span/>").addClass("ui-column").append($("<div/>").addClass("ui-column-left").append(this.message.$el).append(this.$form=$("<div/>").addClass("ui-margin-top"))).append(this.$help=$("<div/>").addClass("ui-column-right")))),this.listenTo(this.collection,"add remove reset",function(){t._renderTable()}),this.listenTo(this.model,"change",function(){t._renderForm()}),this.collection.fetch(),this.model.fetch()},render:function(){this._renderTable(),this._renderForm()},_renderTable:function(){var e=this;this.table.delAll(),this.collection.sort(),this.collection.each(function(t){e.table.add(t.get("name")),e.table.add(t.id),e.table.add(void 0!==t.get("count")?t.get("count"):"Processing..."),e.table.add(new d.default.ButtonIcon({icon:"fa-trash-o",cls:"ui-button-icon-plain",tooltip:(0,o.default)("Delete custom build."),onclick:function(){t.destroy()}}).$el),e.table.append(t.id)})},_renderForm:function(){var e=this,t=new r.default({inputs:[{type:"text",name:"name",label:"Name",help:"Specify a build name e.g. Hamster."},{type:"text",name:"id",label:"Key",help:"Specify a build key e.g. hamster_v1."},{name:"len",type:"conditional",test_param:{name:"type",label:"Definition",help:(0,o.default)("Provide the data source."),type:"select",value:"fasta",data:[{value:"fasta",label:"FASTA-file from history"},{value:"file",label:"Len-file from disk"},{value:"text",label:"Len-file by copy/paste"}]},cases:[{value:"fasta",inputs:[{type:"select",name:"value",label:"FASTA-file",data:this.model.get("fasta_hdas")}]},{value:"file",inputs:[{type:"upload",name:"value",label:"Len-file",data:this.model.get("len_hdas")}]},{value:"text",inputs:[{type:"text",area:!0,name:"value",label:"Edit/Paste"}]}]}],buttons:{save:new d.default.Button({icon:"fa-save",tooltip:(0,o.default)("Create new Build"),title:(0,o.default)("Save"),cls:"btn btn-primary ui-clear-float",onclick:function(){var a=t.data.create();a.id&&a.name?e.collection.create(a,{wait:!0,success:function(t){t.get("message")?e.message.update({message:t.get("message"),status:"warning"}):e.message.update({message:"Successfully added a new custom build.",status:"success"})},error:function(t,a){var l=a&&a.responseJSON&&a.responseJSON.err_msg;e.message.update({message:l||"Failed to create custom build.",status:"danger"})}}):e.message.update({message:"All inputs are required.",status:"danger"})}})},onchange:function(){var a=t.data.match("len|type");if(a){var l=t.field_list[a];e._renderHelp(l.value())}}});this.$form.empty().append(t.$el);var a=this.model.get("installed_builds");a&&a.length?(this.$installed.show(),this.installed_builds.update(this.model.get("installed_builds"))):this.$installed.hide(),this._renderHelp("fasta")},_renderHelp:function(e){this.$help.empty().addClass("alert alert-info").html("fasta"==e?this._templateFasta():this._templateLen())},_templateLen:function(){return"<h4>Length Format</h4><p>The length format is two-column, separated by whitespace, of the form:<pre>chrom/contig   length of chrom/contig</pre></p><p>For example, the first few entries of <em>mm9.len</em> are as follows:<pre>chr1    197195432\nchr2    181748087\nchr3    159599783\nchr4    155630120\nchr5    152537259</pre></p><p>Trackster uses this information to populate the select box for chrom/contig, andto set the maximum basepair of the track browser. You may either upload a .len fileof this format (Len File option), or directly enter the information into the box (Len Entry option).</p>"},_templateFasta:function(){return"<h4>FASTA format</h4><p>This is a multi-fasta file from your current history that provides the genomesequences for each chromosome/contig in your build.</p><p>Here is a snippet from an example multi-fasta file:<pre>>chr1\nATTATATATAAGACCACAGAGAGAATATTTTGCCCGG...\n\n>chr2\nGGCGGCCGCGGCGATATAGAACTACTCATTATATATA...\n\n...</pre></p>"}});e.default={View:m}});
\ No newline at end of file
diff --git a/static/scripts/mvc/user/user-preferences.js b/static/scripts/mvc/user/user-preferences.js
index be792f672ac..2c971fe4d5e 100644
--- a/static/scripts/mvc/user/user-preferences.js
+++ b/static/scripts/mvc/user/user-preferences.js
@@ -1 +1 @@
-define("mvc/user/user-preferences",["exports","mvc/form/form-view","mvc/ui/ui-misc","utils/query-string-parsing"],function(e,i,t,s){"use strict";function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});o(i);var n=o(t),a=o(s),r=Backbone.Model.extend({initialize:function(e){(e=e||{}).user_id=e.user_id||Galaxy.user.id,this.set({user_id:e.user_id,information:{title:"Manage information",description:"Edit your email, addresses and custom parameters or change your username.",url:"api/users/"+e.user_id+"/information/inputs",icon:"fa-user",redirect:"user"},password:{title:"Change password",description:"Allows you to change your login credentials.",icon:"fa-unlock-alt",url:"api/users/"+e.user_id+"/password/inputs",submit_title:"Save password",redirect:"user"},communication:{title:"Change communication settings",description:"Enable or disable the communication feature to chat with other users.",url:"api/users/"+e.user_id+"/communication/inputs",icon:"fa-comments-o",redirect:"user"},permissions:{title:"Set dataset permissions for new histories",description:"Grant others default access to newly created histories. Changes made here will only affect histories created after these settings have been stored.",url:"api/users/"+e.user_id+"/permissions/inputs",icon:"fa-users",submit_title:"Save permissions",redirect:"user"},api_key:{title:"Manage API key",description:"Access your current API key or create a new one.",url:"api/users/"+e.user_id+"/api_key/inputs",icon:"fa-key",submit_title:"Create a new key",submit_icon:"fa-check"},toolbox_filters:{title:"Manage Toolbox filters",description:"Customize your Toolbox by displaying or omitting sets of Tools.",url:"api/users/"+e.user_id+"/toolbox_filters/inputs",icon:"fa-filter",submit_title:"Save filters",redirect:"user"},openids:{title:"Manage OpenIDs",description:"Associate OpenIDs with your account.",icon:"fa-openid",onclick:function(){window.location.href=Galaxy.root+"user/openid_manage?cntrller=user&use_panels=True"}},custom_builds:{title:"Manage custom builds",description:"Add or remove custom builds using history datasets.",icon:"fa-cubes",onclick:function(){window.location.href=Galaxy.root+"custom_builds"}},logout:{title:"Sign out",description:"Click here to sign out of all sessions.",icon:"fa-sign-out",onclick:function(){Galaxy.modal.show({title:"Sign out",body:"Do you want to continue and sign out of all active sessions?",buttons:{Cancel:function(){Galaxy.modal.hide()},"Sign out":function(){window.location.href=Galaxy.root+"user/logout?session_csrf_token="+Galaxy.session_csrf_token}}})}}})}}),u=Backbone.View.extend({title:"User Preferences",initialize:function(){this.model=new r,this.setElement("<div/>"),this.render()},render:function(){var e=this,i=Galaxy.config;$.getJSON(Galaxy.root+"api/users/"+Galaxy.user.id,function(t){e.$preferences=$("<div/>").addClass("ui-panel").append($("<h2/>").append("User preferences")).append($("<p/>").append("You are logged in as <strong>"+_.escape(t.email)+"</strong>.")).append(e.$table=$("<table/>").addClass("ui-panel-table"));var s=a.default.get("message"),o=a.default.get("status");s&&o&&e.$preferences.prepend(new n.default.Message({message:s,status:o}).$el),i.use_remote_user||(e._addLink("information"),e._addLink("password")),i.enable_communication_server&&e._addLink("communication"),e._addLink("custom_builds"),e._addLink("permissions"),e._addLink("api_key"),i.has_user_tool_filters&&e._addLink("toolbox_filters"),i.enable_openid&&!i.use_remote_user&&e._addLink("openids"),Galaxy.session_csrf_token&&e._addLink("logout"),e.$preferences.append(e._templateFooter(t)),e.$el.empty().append(e.$preferences)})},_addLink:function(e){var i=this.model.get(e),t=$(this._templateLink(i)),s=t.find("a");i.onclick?s.on("click",function(){i.onclick()}):s.attr("href",Galaxy.root+"user/"+e),this.$table.append(t)},_templateLink:function(e){return'<tr><td><div class="ui-panel-icon fa '+e.icon+'"></td><td><a class="ui-panel-anchor" href="javascript:void(0)">'+e.title+'</a><div class="ui-form-info">'+e.description+"</div></td></tr>"},_templateFooter:function(e){return'<p class="ui-panel-footer">You are using <strong>'+e.nice_total_disk_usage+"</strong> of disk space in this Galaxy instance. "+(Galaxy.config.enable_quotas?"Your disk quota is: <strong>"+e.quota+"</strong>. ":"")+'Is your usage more than expected? See the <a href="https://galaxyproject.org/learn/managing-datasets/" target="_blank">documentation</a> for tips on how to find all of the data in your account.</p>'}});e.default={View:u,Model:r}});
\ No newline at end of file
+define("mvc/user/user-preferences",["exports","utils/localization","mvc/form/form-view","mvc/ui/ui-misc","utils/query-string-parsing"],function(e,t,i,s,a){"use strict";function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var n=o(t),r=(o(i),o(s)),u=o(a),l=Backbone.Model.extend({initialize:function(e){(e=e||{}).user_id=e.user_id||Galaxy.user.id,this.set({user_id:e.user_id,information:{title:(0,n.default)("Manage information"),description:"Edit your email, addresses and custom parameters or change your username.",url:"api/users/"+e.user_id+"/information/inputs",icon:"fa-user",redirect:"user"},password:{title:(0,n.default)("Change password"),description:(0,n.default)("Allows you to change your login credentials."),icon:"fa-unlock-alt",url:"api/users/"+e.user_id+"/password/inputs",submit_title:"Save password",redirect:"user"},communication:{title:(0,n.default)("Change communication settings"),description:(0,n.default)("Enable or disable the communication feature to chat with other users."),url:"api/users/"+e.user_id+"/communication/inputs",icon:"fa-comments-o",redirect:"user"},permissions:{title:(0,n.default)("Set dataset permissions for new histories"),description:"Grant others default access to newly created histories. Changes made here will only affect histories created after these settings have been stored.",url:"api/users/"+e.user_id+"/permissions/inputs",icon:"fa-users",submit_title:"Save permissions",redirect:"user"},api_key:{title:(0,n.default)("Manage API key"),description:(0,n.default)("Access your current API key or create a new one."),url:"api/users/"+e.user_id+"/api_key/inputs",icon:"fa-key",submit_title:"Create a new key",submit_icon:"fa-check"},toolbox_filters:{title:(0,n.default)("Manage Toolbox filters"),description:(0,n.default)("Customize your Toolbox by displaying or omitting sets of Tools."),url:"api/users/"+e.user_id+"/toolbox_filters/inputs",icon:"fa-filter",submit_title:"Save filters",redirect:"user"},openids:{title:(0,n.default)("Manage OpenIDs"),description:(0,n.default)("Associate OpenIDs with your account."),icon:"fa-openid",onclick:function(){window.location.href=Galaxy.root+"user/openid_manage?cntrller=user&use_panels=True"}},custom_builds:{title:(0,n.default)("Manage custom builds"),description:(0,n.default)("Add or remove custom builds using history datasets."),icon:"fa-cubes",onclick:function(){window.location.href=Galaxy.root+"custom_builds"}},logout:{title:(0,n.default)("Sign out"),description:(0,n.default)("Click here to sign out of all sessions."),icon:"fa-sign-out",onclick:function(){Galaxy.modal.show({title:(0,n.default)("Sign out"),body:"Do you want to continue and sign out of all active sessions?",buttons:{Cancel:function(){Galaxy.modal.hide()},"Sign out":function(){window.location.href=Galaxy.root+"user/logout?session_csrf_token="+Galaxy.session_csrf_token}}})}}})}}),d=Backbone.View.extend({title:(0,n.default)("User Preferences"),initialize:function(){this.model=new l,this.setElement("<div/>"),this.render()},render:function(){var e=this,t=Galaxy.config;$.getJSON(Galaxy.root+"api/users/"+Galaxy.user.id,function(i){e.$preferences=$("<div/>").addClass("ui-panel").append($("<h2/>").append("User preferences")).append($("<p/>").append("You are logged in as <strong>"+_.escape(i.email)+"</strong>.")).append(e.$table=$("<table/>").addClass("ui-panel-table"));var s=u.default.get("message"),a=u.default.get("status");s&&a&&e.$preferences.prepend(new r.default.Message({message:s,status:a}).$el),t.use_remote_user||(e._addLink("information"),e._addLink("password")),t.enable_communication_server&&e._addLink("communication"),e._addLink("custom_builds"),e._addLink("permissions"),e._addLink("api_key"),t.has_user_tool_filters&&e._addLink("toolbox_filters"),t.enable_openid&&!t.use_remote_user&&e._addLink("openids"),Galaxy.session_csrf_token&&e._addLink("logout"),e.$preferences.append(e._templateFooter(i)),e.$el.empty().append(e.$preferences)})},_addLink:function(e){var t=this.model.get(e),i=$(this._templateLink(t)),s=i.find("a");t.onclick?s.on("click",function(){t.onclick()}):s.attr("href",Galaxy.root+"user/"+e),this.$table.append(i)},_templateLink:function(e){return'<tr><td><div class="ui-panel-icon fa '+e.icon+'"></td><td><a class="ui-panel-anchor" href="javascript:void(0)">'+e.title+'</a><div class="ui-form-info">'+e.description+"</div></td></tr>"},_templateFooter:function(e){return'<p class="ui-panel-footer">You are using <strong>'+e.nice_total_disk_usage+"</strong> of disk space in this Galaxy instance. "+(Galaxy.config.enable_quotas?"Your disk quota is: <strong>"+e.quota+"</strong>. ":"")+'Is your usage more than expected? See the <a href="https://galaxyproject.org/learn/managing-datasets/" target="_blank">documentation</a> for tips on how to find all of the data in your account.</p>'}});e.default={View:d,Model:l}});
\ No newline at end of file
diff --git a/static/scripts/mvc/workflow/workflow-forms.js b/static/scripts/mvc/workflow/workflow-forms.js
index 5cae29e604f..17c8912e778 100644
--- a/static/scripts/mvc/workflow/workflow-forms.js
+++ b/static/scripts/mvc/workflow/workflow-forms.js
@@ -1 +1 @@
-define("mvc/workflow/workflow-forms",["exports","utils/utils","mvc/form/form-view","mvc/tool/tool-form-base"],function(e,t,a,o){"use strict";function n(e){return e&&e.__esModule?e:{default:e}}function i(e){var t=e.model.attributes,a=t.workflow,o=t.node;t.inputs.unshift({type:"text",name:"__annotation",label:"Annotation",fixed:!0,value:o.annotation,area:!0,help:"Add an annotation or notes to this step. Annotations are available when a workflow is viewed."}),t.inputs.unshift({type:"text",name:"__label",label:"Label",value:o.label,help:"Add a step label.",fixed:!0,onchange:function(t){var n=!1;for(var i in a.nodes){var l=a.nodes[i];if(l.label&&l.label==t&&l.id!=o.id){n=!0;break}}var r=e.data.match("__label");e.element_list[r].model.set("error_text",n&&"Duplicate label. Please fix this before saving the workflow."),e.trigger("change")}})}function l(e,t,a,o){var n=o.node.post_job_actions;(t=t||[]).push(e);for(var i in e.inputs){var r=e.inputs[i];if(r.action){if(r.name="pja__"+a+"__"+r.action,r.pja_arg&&(r.name+="__"+r.pja_arg),r.payload)for(var s in r.payload)r.payload[r.name+"__"+s]=r.payload[s],delete r.payload[s];var u=n[r.action+a];if(u){for(var p in t)t[p].expanded=!0;r.pja_arg?r.value=u.action_arguments&&u.action_arguments[r.pja_arg]||r.value:r.value="true"}}r.inputs&&l(r,t.slice(0),a,o)}}function r(e,t){var a=[],o=[],n=t.datatypes,i=t.node,r=t.workflow;for(var s in n)a.push({0:n[s],1:n[s]});for(s in i.input_terminals)o.push(i.input_terminals[s].name);a.sort(function(e,t){return e.label>t.label?1:e.label<t.label?-1:0}),a.unshift({0:"Sequences",1:"Sequences"}),a.unshift({0:"Roadmaps",1:"Roadmaps"}),a.unshift({0:"Leave unchanged",1:"__empty__"});var u,p={title:"Configure Output: '"+e+"'",type:"section",flat:!0,inputs:[{label:"Label",type:"text",value:(u=i.getWorkflowOutput(e))&&u.label||"",help:"This will provide a short name to describe the output - this must be unique across workflows.",onchange:function(t){r.attemptUpdateOutputLabel(i,e,t)}},{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://galaxyproject.org/learn/advanced-workflow/variables/">here</a> for more information. Valid inputs are: <strong>'+o.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:a,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Add Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{action:"RemoveTagDatasetAction",pja_arg:"tags",label:"Remove Tags",type:"text",value:"",ignore:"",help:"This action will remove tags for the dataset."},{title:"Assign columns",type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};return l(p,[],e,t),p}function s(e){var t=e.model.attributes,a=t.inputs,o=t.node,n=o.post_job_actions,i=o.output_terminals&&Object.keys(o.output_terminals)[0];if(i){a.push({name:"pja__"+i+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(n["EmailAction"+i])),ignore:"false",help:"An email notification will be sent when the job has completed.",payload:{host:window.location.host}}),a.push({name:"pja__"+i+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(n["DeleteIntermediatesAction"+i])),ignore:"false",help:"Upon completion of this step, delete non-starred outputs from completed workflow steps if they are no longer required as inputs."});for(var l in o.output_terminals)a.push(r(l,t))}}Object.defineProperty(e,"__esModule",{value:!0});var u=n(t),p=n(a),d=n(o),c=Backbone.View.extend({initialize:function(e){var t=this,a=e.node;this.form=new p.default(u.default.merge(e,{onchange:function(){u.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{id:a.id,type:a.type,content_id:a.content_id,inputs:t.form.data.create()},success:function(e){a.update_field_data(e)}})}})),i(this.form),this.form.render()}}),f=Backbone.View.extend({initialize:function(e){var t=this,a=e.node;this.form=new d.default(u.default.merge(e,{text_enable:"Set in Advance",text_disable:"Set at Runtime",narrow:!0,initial_errors:!0,cls:"ui-portlet-narrow",initialmodel:function(e,a){t._customize(a),e.resolve()},buildmodel:function(e,t){t.model.get("postchange")(e,t)},postchange:function(e,o){var n=o.model.attributes,i={tool_id:n.id,tool_version:n.version,type:"tool",inputs:$.extend(!0,{},o.data.create())};Galaxy.emit.debug("tool-form-workflow::postchange()","Sending current state.",i),u.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:i,success:function(n){o.model.set(n.config_form),t._customize(o),o.update(n.config_form),o.errors(n.config_form),a.update_field_data(n),Galaxy.emit.debug("tool-form-workflow::postchange()","Received new model.",n),e.resolve()},error:function(t){Galaxy.emit.debug("tool-form-workflow::postchange()","Refresh request failed.",t),e.reject()}})}}))},_customize:function(e){var t=e.model.attributes;u.default.deepeach(t.inputs,function(e){e.type&&(-1!=["data","data_collection"].indexOf(e.type)?(e.type="hidden",e.info="Data input '"+e.name+"' ("+u.default.textify(e.extensions)+")",e.value={__class__:"RuntimeValue"}):e.fixed||(e.collapsible_value={__class__:"RuntimeValue"},e.is_workflow=e.options&&0===e.options.length||-1!=["integer","float"].indexOf(e.type)))}),u.default.deepeach(t.inputs,function(e){"conditional"===e.type&&(e.test_param.collapsible_value=void 0)}),s(e),i(e)}});e.default={Default:c,Tool:f}});
\ No newline at end of file
+define("mvc/workflow/workflow-forms",["exports","utils/localization","utils/utils","mvc/form/form-view","mvc/tool/tool-form-base"],function(e,t,a,o,n){"use strict";function i(e){return e&&e.__esModule?e:{default:e}}function l(e){var t=e.model.attributes,a=t.workflow,o=t.node;t.inputs.unshift({type:"text",name:"__annotation",label:"Annotation",fixed:!0,value:o.annotation,area:!0,help:"Add an annotation or notes to this step. Annotations are available when a workflow is viewed."}),t.inputs.unshift({type:"text",name:"__label",label:"Label",value:o.label,help:(0,p.default)("Add a step label."),fixed:!0,onchange:function(t){var n=!1;for(var i in a.nodes){var l=a.nodes[i];if(l.label&&l.label==t&&l.id!=o.id){n=!0;break}}var r=e.data.match("__label");e.element_list[r].model.set("error_text",n&&"Duplicate label. Please fix this before saving the workflow."),e.trigger("change")}})}function r(e,t,a,o){var n=o.node.post_job_actions;(t=t||[]).push(e);for(var i in e.inputs){var l=e.inputs[i];if(l.action){if(l.name="pja__"+a+"__"+l.action,l.pja_arg&&(l.name+="__"+l.pja_arg),l.payload)for(var s in l.payload)l.payload[l.name+"__"+s]=l.payload[s],delete l.payload[s];var u=n[l.action+a];if(u){for(var p in t)t[p].expanded=!0;l.pja_arg?l.value=u.action_arguments&&u.action_arguments[l.pja_arg]||l.value:l.value="true"}}l.inputs&&r(l,t.slice(0),a,o)}}function s(e,t){var a=[],o=[],n=t.datatypes,i=t.node,l=t.workflow;for(var s in n)a.push({0:n[s],1:n[s]});for(s in i.input_terminals)o.push(i.input_terminals[s].name);a.sort(function(e,t){return e.label>t.label?1:e.label<t.label?-1:0}),a.unshift({0:"Sequences",1:"Sequences"}),a.unshift({0:"Roadmaps",1:"Roadmaps"}),a.unshift({0:"Leave unchanged",1:"__empty__"});var u,d={title:"Configure Output: '"+e+"'",type:"section",flat:!0,inputs:[{label:"Label",type:"text",value:(u=i.getWorkflowOutput(e))&&u.label||"",help:"This will provide a short name to describe the output - this must be unique across workflows.",onchange:function(t){l.attemptUpdateOutputLabel(i,e,t)}},{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://galaxyproject.org/learn/advanced-workflow/variables/">here</a> for more information. Valid inputs are: <strong>'+o.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:a,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Add Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{action:"RemoveTagDatasetAction",pja_arg:"tags",label:"Remove Tags",type:"text",value:"",ignore:"",help:"This action will remove tags for the dataset."},{title:(0,p.default)("Assign columns"),type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};return r(d,[],e,t),d}function u(e){var t=e.model.attributes,a=t.inputs,o=t.node,n=o.post_job_actions,i=o.output_terminals&&Object.keys(o.output_terminals)[0];if(i){a.push({name:"pja__"+i+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(n["EmailAction"+i])),ignore:"false",help:(0,p.default)("An email notification will be sent when the job has completed."),payload:{host:window.location.host}}),a.push({name:"pja__"+i+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(n["DeleteIntermediatesAction"+i])),ignore:"false",help:"Upon completion of this step, delete non-starred outputs from completed workflow steps if they are no longer required as inputs."});for(var l in o.output_terminals)a.push(s(l,t))}}Object.defineProperty(e,"__esModule",{value:!0});var p=i(t),d=i(a),c=i(o),f=i(n),m=Backbone.View.extend({initialize:function(e){var t=this,a=e.node;this.form=new c.default(d.default.merge(e,{onchange:function(){d.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:{id:a.id,type:a.type,content_id:a.content_id,inputs:t.form.data.create()},success:function(e){a.update_field_data(e)}})}})),l(this.form),this.form.render()}}),_=Backbone.View.extend({initialize:function(e){var t=this,a=e.node;this.form=new f.default(d.default.merge(e,{text_enable:"Set in Advance",text_disable:"Set at Runtime",narrow:!0,initial_errors:!0,cls:"ui-portlet-narrow",initialmodel:function(e,a){t._customize(a),e.resolve()},buildmodel:function(e,t){t.model.get("postchange")(e,t)},postchange:function(e,o){var n=o.model.attributes,i={tool_id:n.id,tool_version:n.version,type:"tool",inputs:$.extend(!0,{},o.data.create())};Galaxy.emit.debug("tool-form-workflow::postchange()","Sending current state.",i),d.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:i,success:function(n){o.model.set(n.config_form),t._customize(o),o.update(n.config_form),o.errors(n.config_form),a.update_field_data(n),Galaxy.emit.debug("tool-form-workflow::postchange()","Received new model.",n),e.resolve()},error:function(t){Galaxy.emit.debug("tool-form-workflow::postchange()","Refresh request failed.",t),e.reject()}})}}))},_customize:function(e){var t=e.model.attributes;d.default.deepeach(t.inputs,function(e){e.type&&(-1!=["data","data_collection"].indexOf(e.type)?(e.type="hidden",e.info="Data input '"+e.name+"' ("+d.default.textify(e.extensions)+")",e.value={__class__:"RuntimeValue"}):e.fixed||(e.collapsible_value={__class__:"RuntimeValue"},e.is_workflow=e.options&&0===e.options.length||-1!=["integer","float"].indexOf(e.type)))}),d.default.deepeach(t.inputs,function(e){"conditional"===e.type&&(e.test_param.collapsible_value=void 0)}),u(e),l(e)}});e.default={Default:m,Tool:_}});
\ No newline at end of file
diff --git a/static/scripts/mvc/workflow/workflow-view.js b/static/scripts/mvc/workflow/workflow-view.js
index ddcf51b40b1..a835cc7a46e 100644
--- a/static/scripts/mvc/workflow/workflow-view.js
+++ b/static/scripts/mvc/workflow/workflow-view.js
@@ -1 +1 @@
-define("mvc/workflow/workflow-view",["exports","utils/utils","mvc/workflow/workflow-manager","mvc/workflow/workflow-canvas","mvc/workflow/workflow-node","mvc/workflow/workflow-icons","mvc/workflow/workflow-forms","mvc/ui/ui-misc","utils/async-save-text","libs/toastr","ui/editable-text"],function(o,e,t,i,a,n,s,l,r,d){"use strict";function w(o){return o&&o.__esModule?o:{default:o}}function f(o){var e=$("#galaxy_tools").contents();0===e.length&&(e=$(document),$(this).removeClass("search_active"),e.find(".toolTitle").removeClass("search_match"),e.find(".toolSectionBody").hide(),e.find(".toolTitle").show(),e.find(".toolPanelLabel").show(),e.find(".toolSectionWrapper").each(function(){"recently_used_wrapper"!==$(this).attr("id")?$(this).show():$(this).hasClass("user_pref_visible")&&$(this).show()}),e.find("#search-no-results").hide(),e.find("#search-spinner").hide(),o&&e.find("#tool-search-query").val("search tools"))}function c(o,e){var t=m.default[e];if(t){var i=$('<i class="icon fa">&nbsp;</i>').addClass(t);o.before(i)}}Object.defineProperty(o,"__esModule",{value:!0});var u=w(e),h=w(t),p=w(i),v=w(a),m=w(n),k=w(s),g=w(l),y=w(r);!function(o){if(o&&o.__esModule)return o;var e={};if(null!=o)for(var t in o)Object.prototype.hasOwnProperty.call(o,t)&&(e[t]=o[t]);e.default=o}(d);window.workflow_globals=window.workflow_globals||{},o.default=Backbone.View.extend({initialize:function(o){function e(){$.jStorage.set("overview-off",!1),$("#overview-border").css("right","0px"),$("#close-viewport").css("background-position","0px 0px")}function t(){$.jStorage.set("overview-off",!0),$("#overview-border").css("right","20000px"),$("#close-viewport").css("background-position","12px 0px")}var i=window.workflow_globals.app=this;this.options=o,this.urls=o&&o.urls||{};var a=function(o,e){if(show_message("Saving workflow","progress"),i.workflow.check_changes_in_active_form(),!i.workflow.has_changes)return hide_modal(),void(e&&e());i.workflow.rectify_workflow_outputs(),u.default.request({url:Galaxy.root+"api/workflows/"+i.options.id,type:"PUT",data:{workflow:i.workflow.to_simple()},success:function(o){var t=$("<div/>").text(o.message);if(o.errors){t.addClass("warningmark");var a=$("<ul/>");$.each(o.errors,function(o,e){$("<li/>").text(e).appendTo(a)}),t.append(a)}else t.addClass("donemark");i.workflow.name=o.name,i.workflow.has_changes=!1,i.workflow.stored=!0,i.showWorkflowParameters(),o.errors?window.show_modal("Saving workflow",t,{Ok:hide_modal}):(e&&e(),hide_modal())},error:function(o){window.show_modal("Saving workflow failed.",o.err_msg,{Ok:hide_modal})}})};$("#tool-search-query").click(function(){$(this).focus(),$(this).select()}).keyup(function(){if($(this).css("font-style","normal"),this.value.length<3)f(!1);else if(this.value!=this.lastValue){$(this).addClass("search_active");var o=this.value;this.timer&&clearTimeout(this.timer),$("#search-spinner").show(),this.timer=setTimeout(function(){$.get(i.urls.tool_search,{q:o},function(o){if($("#search-no-results").hide(),$(".toolSectionWrapper").hide(),$(".toolSectionWrapper").find(".toolTitle").hide(),0!=o.length){var e=$.map(o,function(o,e){return"link-"+o});$(e).each(function(o,e){$("[id='"+e+"']").parent().addClass("search_match"),$("[id='"+e+"']").parent().show().parent().parent().show().parent().show()}),$(".toolPanelLabel").each(function(){for(var o=$(this),e=o.next(),t=!0;0!==e.length&&e.hasClass("toolTitle");){if(e.is(":visible")){t=!1;break}e=e.next()}t&&o.hide()})}else $("#search-no-results").show();$("#search-spinner").hide()},"json")},400)}this.lastValue=this.value}),this.canvas_manager=window.workflow_globals.canvas_manager=new p.default(this,$("#canvas-viewport"),$("#overview")),this.reset(),this.datatypes=JSON.parse($.ajax({url:Galaxy.root+"api/datatypes",async:!1}).responseText),this.datatypes_mapping=JSON.parse($.ajax({url:Galaxy.root+"api/datatypes/mapping",async:!1}).responseText),this.ext_to_type=this.datatypes_mapping.ext_to_class_name,this.type_to_type=this.datatypes_mapping.class_to_classes,this._workflowLoadAjax(i.options.id,{success:function(o){i.reset(),i.workflow.from_simple(o,!0),i.workflow.has_changes=!1,i.workflow.fit_canvas_to_nodes(),i.scroll_to_nodes(),i.canvas_manager.draw_overview();var e="";_.each(o.steps,function(t,a){var n="";t.errors&&(n+="<li>"+t.errors+"</li>"),_.each(o.upgrade_messages[a],function(o){n+="<li>"+o+"</li>"}),n&&(e+="<li>Step "+(parseInt(a,10)+1)+": "+i.workflow.nodes[a].name+"<ul>"+n+"</ul></li>")}),e?window.show_modal("Issues loading this workflow","Please review the following issues, possibly resulting from tool upgrades or changes.<p><ul>"+e+"</ul></p>",{Continue:hide_modal}):hide_modal(),i.showWorkflowParameters()},beforeSubmit:function(o){show_message("Loading workflow","progress")}}),window.make_popupmenu&&make_popupmenu($("#workflow-options-button"),{Save:a,"Save As":function(){var o=$('<form><label style="display:inline-block; width: 100%;">Save as name: </label><input type="text" id="workflow_rename" style="width: 80%;" autofocus/><br><label style="display:inline-block; width: 100%;">Annotation: </label><input type="text" id="wf_annotation" style="width: 80%;" /></form>');window.show_modal("Save As a New Workflow",o,{OK:function(){var o=$("#workflow_rename").val().length>0?$("#workflow_rename").val():"SavedAs_"+i.workflow.name,e=$("#wf_annotation").val().length>0?$("#wf_annotation").val():"";$.ajax({url:i.urls.workflow_save_as,type:"POST",data:{workflow_name:o,workflow_annotation:e,workflow_data:function(){return JSON.stringify(i.workflow.to_simple())}}}).done(function(o){window.onbeforeunload=void 0,window.location=Galaxy.root+"workflow/editor?id="+o,hide_modal()}).fail(function(){hide_modal(),alert("Saving this workflow failed. Please contact this site's administrator.")})},Cancel:hide_modal})},Run:function(){window.location=Galaxy.root+"workflows/run?id="+i.options.id},"Edit Attributes":function(){i.workflow.clear_active_node()},"Auto Re-layout":function(){i.workflow.layout(),i.workflow.fit_canvas_to_nodes(),i.scroll_to_nodes(),i.canvas_manager.draw_overview()},Close:function(){if(i.workflow.check_changes_in_active_form(),workflow&&i.workflow.has_changes){var o=function(){window.onbeforeunload=void 0,window.document.location=i.urls.workflow_index};window.show_modal("Close workflow editor","There are unsaved changes to your workflow which will be lost.",{Cancel:hide_modal,"Save Changes":function(){a(null,o)}},{"Don't Save":o})}else window.document.location=i.urls.workflow_index}});var n=$.jStorage.get("overview-size");void 0!==n&&$("#overview-border").css({width:n,height:n}),$.jStorage.get("overview-off")?t():e(),$("#overview-border").bind("dragend",function(o,e){var t=$(this).offsetParent(),i=t.offset(),a=Math.max(t.width()-(e.offsetX-i.left),t.height()-(e.offsetY-i.top));$.jStorage.set("overview-size",a+"px")}),$("#close-viewport").click(function(){"0px"===$("#overview-border").css("right")?t():e()}),window.onbeforeunload=function(){if(workflow&&i.workflow.has_changes)return"There are unsaved changes to your workflow which will be lost."},this.options.workflows.length>0&&$("#left").find(".toolMenu").append(this._buildToolPanelWorkflows()),$("div.toolSectionBody").hide(),$("div.toolSectionTitle > span").wrap("<a href='#'></a>");var s=null;$("div.toolSectionTitle").each(function(){var o=$(this).next("div.toolSectionBody");$(this).click(function(){o.is(":hidden")?(s&&s.slideUp("fast"),s=o,o.slideDown("fast")):(o.slideUp("fast"),s=null)})}),(0,y.default)("workflow-name","workflow-name",i.urls.rename_async,"new_name"),$("#workflow-tag").click(function(){return $(".tag-area").click(),!1}),(0,y.default)("workflow-annotation","workflow-annotation",i.urls.annotate_async,"new_annotation",25,!0,4)},_buildToolPanelWorkflows:function(){var o=this,e=$('<div class="toolSectionWrapper"><div class="toolSectionTitle"><a href="#"><span>Workflows</span></a></div><div class="toolSectionBody"><div class="toolSectionBg"/></div></div>');return _.each(this.options.workflows,function(t){if(t.id!==o.options.id){var i=new g.default.ButtonIcon({icon:"fa fa-copy",cls:"ui-button-icon-plain",tooltip:"Copy and insert individual steps",onclick:function(){t.step_count<2?o.copy_into_workflow(t.id,t.name):Galaxy.modal.show({title:"Warning",body:"This will copy "+t.step_count+" new steps into your workflow.",buttons:{Cancel:function(){Galaxy.modal.hide()},Copy:function(){Galaxy.modal.hide(),o.copy_into_workflow(t.id,t.name)}}})}}),a=$("<a/>").attr("href","#").html(t.name).on("click",function(){o.add_node_for_subworkflow(t.latest_id,t.name)});e.find(".toolSectionBg").append($("<div/>").addClass("toolTitle").append(a).append(i.$el))}}),e},copy_into_workflow:function(o){var e=this;this._workflowLoadAjax(o,{success:function(o){e.workflow.from_simple(o,!1);var t="";$.each(o.upgrade_messages,function(o,i){t+="<li>Step "+(parseInt(o,10)+1)+": "+e.workflow.nodes[o].name+"<ul>",$.each(i,function(o,e){t+="<li>"+e+"</li>"}),t+="</ul></li>"}),t?window.show_modal("Subworkflow embedded with changes","Problems were encountered loading this workflow (possibly a result of tool upgrades). Please review the following parameters and then save.<ul>"+t+"</ul>",{Continue:hide_modal}):hide_modal()},beforeSubmit:function(o){show_message("Importing workflow","progress")}})},reset:function(){this.workflow&&this.workflow.remove_all(),this.workflow=window.workflow_globals.workflow=new h.default(this,$("#canvas-container"))},scroll_to_nodes:function(){var o,e,t=$("#canvas-viewport"),i=$("#canvas-container");e=i.width()<t.width()?(t.width()-i.width())/2:0,o=i.height()<t.height()?(t.height()-i.height())/2:0,i.css({left:e,top:o})},_workflowLoadAjax:function(o,e){$.ajax(u.default.merge(e,{url:this.urls.load_workflow,data:{id:o,_:"true"},dataType:"json",cache:!1}))},_moduleInitAjax:function(o,e){var t=this;u.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:e,success:function(e){o.init_field_data(e),o.update_field_data(e),t.workflow.activate_node(o)}})},add_node_for_tool:function(o,e){var t=this.workflow.create_node("tool",e,o);this._moduleInitAjax(t,{type:"tool",tool_id:o,_:"true"})},add_node_for_subworkflow:function(o,e){var t=this.workflow.create_node("subworkflow",e,o);this._moduleInitAjax(t,{type:"subworkflow",content_id:o,_:"true"})},add_node_for_module:function(o,e){var t=this.workflow.create_node(o,e);this._moduleInitAjax(t,{type:o,_:"true"})},display_file_list:function(o){var e="<select id='node_data_list' name='node_data_list'>";for(var t in o.output_terminals)e+="<option value='"+t+"'>"+t+"</option>";return e+="</select>"},showWorkflowParameters:function(){var o=/\$\{.+?\}/g,e=[],t=$("#workflow-parameters-container"),i=$("#workflow-parameters-box"),a="",n=[];$.each(this.workflow.nodes,function(t,i){i.config_form&&i.config_form.inputs&&u.default.deepeach(i.config_form.inputs,function(e){if("string"==typeof e.value){var t=e.value.match(o);t&&(n=n.concat(t))}}),i.post_job_actions&&$.each(i.post_job_actions,function(e,t){t.action_arguments&&$.each(t.action_arguments,function(e,t){var i=t.match(o);i&&(n=n.concat(i))})}),n&&$.each(n,function(o,t){-1===$.inArray(t,e)&&e.push(t)})}),e&&0!==e.length?($.each(e,function(o,e){a+="<div>"+e.substring(2,e.length-1)+"</div>"}),t.html(a),i.show()):(t.html(a),i.hide())},showAttributes:function(){$(".right-content").hide(),$("#edit-attributes").show()},showForm:function(o,e){var t="right-content",i=t+"-"+e.id,a=$("#"+t);if(o&&0==a.find("#"+i).length){var n=$('<div id="'+i+'" class="'+t+'"/>');if(o.node=e,o.workflow=this.workflow,o.datatypes=this.datatypes,o.icon=m.default[e.type],o.cls="ui-portlet-narrow",e){var s="tool"==e.type?"Tool":"Default";n.append(new k.default[s](o).form.$el),a.append(n)}else Galaxy.emit.debug("workflow-view::initialize()","Node not found in workflow.")}$("."+t).hide(),a.find("#"+i).show(),a.show(),a.scrollTop()},isSubType:function(o,e){return o=this.ext_to_type[o],e=this.ext_to_type[e],this.type_to_type[o]&&e in this.type_to_type[o]},prebuildNode:function(o,e,t){var i=this,a=$("<div class='toolForm toolFormInCanvas'/>"),n=$("<div class='toolFormTitle unselectable'><span class='nodeTitle'>"+e+"</div></div>");c(n.find(".nodeTitle"),o),a.append(n),a.css("left",$(window).scrollLeft()+20),a.css("top",$(window).scrollTop()+20),a.append($("<div class='toolFormBody'></div>"));var s=new v.default(this,{element:a});s.type=o,s.content_id=t;var l="<div><img height='16' align='middle' src='"+Galaxy.root+"static/images/loading_small_white_bg.gif'/> loading tool info...</div>";a.find(".toolFormBody").append(l);var r=$("<div class='buttons' style='float: right;'></div>");r.append($("<div/>").addClass("fa-icon-button fa fa-files-o").click(function(o){s.clone()})),r.append($("<div/>").addClass("fa-icon-button fa fa-times").click(function(o){s.destroy()})),a.appendTo("#canvas-container");var d=$("#canvas-container").position(),w=$("#canvas-container").parent(),f=a.width(),u=a.height();return a.css({left:-d.left+w.width()/2-f/2,top:-d.top+w.height()/2-u/2}),r.prependTo(a.find(".toolFormTitle")),f+=r.width()+10,a.css("width",f),a.bind("dragstart",function(){i.workflow.activate_node(s)}).bind("dragend",function(){i.workflow.node_changed(this),i.workflow.fit_canvas_to_nodes(),i.canvas_manager.draw_overview()}).bind("dragclickonly",function(){i.workflow.activate_node(s)}).bind("drag",function(o,e){var t=$(this).offsetParent().offset(),i=e.offsetX-t.left,a=e.offsetY-t.top;$(this).css({left:i,top:a}),$(this).find(".terminal").each(function(){this.terminal.redraw()})}),s}})});
\ No newline at end of file
+define("mvc/workflow/workflow-view",["exports","utils/localization","utils/utils","mvc/workflow/workflow-manager","mvc/workflow/workflow-canvas","mvc/workflow/workflow-node","mvc/workflow/workflow-icons","mvc/workflow/workflow-forms","mvc/ui/ui-misc","utils/async-save-text","libs/toastr","ui/editable-text"],function(o,e,t,i,a,n,s,l,r,d,w){"use strict";function f(o){return o&&o.__esModule?o:{default:o}}function c(o){var e=$("#galaxy_tools").contents();0===e.length&&(e=$(document),$(this).removeClass("search_active"),e.find(".toolTitle").removeClass("search_match"),e.find(".toolSectionBody").hide(),e.find(".toolTitle").show(),e.find(".toolPanelLabel").show(),e.find(".toolSectionWrapper").each(function(){"recently_used_wrapper"!==$(this).attr("id")?$(this).show():$(this).hasClass("user_pref_visible")&&$(this).show()}),e.find("#search-no-results").hide(),e.find("#search-spinner").hide(),o&&e.find("#tool-search-query").val("search tools"))}function u(o,e){var t=g.default[e];if(t){var i=$('<i class="icon fa">&nbsp;</i>').addClass(t);o.before(i)}}Object.defineProperty(o,"__esModule",{value:!0});var h=f(e),p=f(t),v=f(i),m=f(a),k=f(n),g=f(s),y=f(l),b=f(r),x=f(d);!function(o){if(o&&o.__esModule)return o;var e={};if(null!=o)for(var t in o)Object.prototype.hasOwnProperty.call(o,t)&&(e[t]=o[t]);e.default=o}(w);window.workflow_globals=window.workflow_globals||{},o.default=Backbone.View.extend({initialize:function(o){function e(){$.jStorage.set("overview-off",!1),$("#overview-border").css("right","0px"),$("#close-viewport").css("background-position","0px 0px")}function t(){$.jStorage.set("overview-off",!0),$("#overview-border").css("right","20000px"),$("#close-viewport").css("background-position","12px 0px")}var i=window.workflow_globals.app=this;this.options=o,this.urls=o&&o.urls||{};var a=function(o,e){if(show_message("Saving workflow","progress"),i.workflow.check_changes_in_active_form(),!i.workflow.has_changes)return hide_modal(),void(e&&e());i.workflow.rectify_workflow_outputs(),p.default.request({url:Galaxy.root+"api/workflows/"+i.options.id,type:"PUT",data:{workflow:i.workflow.to_simple()},success:function(o){var t=$("<div/>").text(o.message);if(o.errors){t.addClass("warningmark");var a=$("<ul/>");$.each(o.errors,function(o,e){$("<li/>").text(e).appendTo(a)}),t.append(a)}else t.addClass("donemark");i.workflow.name=o.name,i.workflow.has_changes=!1,i.workflow.stored=!0,i.showWorkflowParameters(),o.errors?window.show_modal("Saving workflow",t,{Ok:hide_modal}):(e&&e(),hide_modal())},error:function(o){window.show_modal("Saving workflow failed.",o.err_msg,{Ok:hide_modal})}})};$("#tool-search-query").click(function(){$(this).focus(),$(this).select()}).keyup(function(){if($(this).css("font-style","normal"),this.value.length<3)c(!1);else if(this.value!=this.lastValue){$(this).addClass("search_active");var o=this.value;this.timer&&clearTimeout(this.timer),$("#search-spinner").show(),this.timer=setTimeout(function(){$.get(i.urls.tool_search,{q:o},function(o){if($("#search-no-results").hide(),$(".toolSectionWrapper").hide(),$(".toolSectionWrapper").find(".toolTitle").hide(),0!=o.length){var e=$.map(o,function(o,e){return"link-"+o});$(e).each(function(o,e){$("[id='"+e+"']").parent().addClass("search_match"),$("[id='"+e+"']").parent().show().parent().parent().show().parent().show()}),$(".toolPanelLabel").each(function(){for(var o=$(this),e=o.next(),t=!0;0!==e.length&&e.hasClass("toolTitle");){if(e.is(":visible")){t=!1;break}e=e.next()}t&&o.hide()})}else $("#search-no-results").show();$("#search-spinner").hide()},"json")},400)}this.lastValue=this.value}),this.canvas_manager=window.workflow_globals.canvas_manager=new m.default(this,$("#canvas-viewport"),$("#overview")),this.reset(),this.datatypes=JSON.parse($.ajax({url:Galaxy.root+"api/datatypes",async:!1}).responseText),this.datatypes_mapping=JSON.parse($.ajax({url:Galaxy.root+"api/datatypes/mapping",async:!1}).responseText),this.ext_to_type=this.datatypes_mapping.ext_to_class_name,this.type_to_type=this.datatypes_mapping.class_to_classes,this._workflowLoadAjax(i.options.id,{success:function(o){i.reset(),i.workflow.from_simple(o,!0),i.workflow.has_changes=!1,i.workflow.fit_canvas_to_nodes(),i.scroll_to_nodes(),i.canvas_manager.draw_overview();var e="";_.each(o.steps,function(t,a){var n="";t.errors&&(n+="<li>"+t.errors+"</li>"),_.each(o.upgrade_messages[a],function(o){n+="<li>"+o+"</li>"}),n&&(e+="<li>Step "+(parseInt(a,10)+1)+": "+i.workflow.nodes[a].name+"<ul>"+n+"</ul></li>")}),e?window.show_modal("Issues loading this workflow","Please review the following issues, possibly resulting from tool upgrades or changes.<p><ul>"+e+"</ul></p>",{Continue:hide_modal}):hide_modal(),i.showWorkflowParameters()},beforeSubmit:function(o){show_message("Loading workflow","progress")}}),window.make_popupmenu&&make_popupmenu($("#workflow-options-button"),{Save:a,"Save As":function(){var o=$('<form><label style="display:inline-block; width: 100%;">Save as name: </label><input type="text" id="workflow_rename" style="width: 80%;" autofocus/><br><label style="display:inline-block; width: 100%;">Annotation: </label><input type="text" id="wf_annotation" style="width: 80%;" /></form>');window.show_modal("Save As a New Workflow",o,{OK:function(){var o=$("#workflow_rename").val().length>0?$("#workflow_rename").val():"SavedAs_"+i.workflow.name,e=$("#wf_annotation").val().length>0?$("#wf_annotation").val():"";$.ajax({url:i.urls.workflow_save_as,type:"POST",data:{workflow_name:o,workflow_annotation:e,workflow_data:function(){return JSON.stringify(i.workflow.to_simple())}}}).done(function(o){window.onbeforeunload=void 0,window.location=Galaxy.root+"workflow/editor?id="+o,hide_modal()}).fail(function(){hide_modal(),alert("Saving this workflow failed. Please contact this site's administrator.")})},Cancel:hide_modal})},Run:function(){window.location=Galaxy.root+"workflows/run?id="+i.options.id},"Edit Attributes":function(){i.workflow.clear_active_node()},"Auto Re-layout":function(){i.workflow.layout(),i.workflow.fit_canvas_to_nodes(),i.scroll_to_nodes(),i.canvas_manager.draw_overview()},Close:function(){if(i.workflow.check_changes_in_active_form(),workflow&&i.workflow.has_changes){var o=function(){window.onbeforeunload=void 0,window.document.location=i.urls.workflow_index};window.show_modal("Close workflow editor","There are unsaved changes to your workflow which will be lost.",{Cancel:hide_modal,"Save Changes":function(){a(null,o)}},{"Don't Save":o})}else window.document.location=i.urls.workflow_index}});var n=$.jStorage.get("overview-size");void 0!==n&&$("#overview-border").css({width:n,height:n}),$.jStorage.get("overview-off")?t():e(),$("#overview-border").bind("dragend",function(o,e){var t=$(this).offsetParent(),i=t.offset(),a=Math.max(t.width()-(e.offsetX-i.left),t.height()-(e.offsetY-i.top));$.jStorage.set("overview-size",a+"px")}),$("#close-viewport").click(function(){"0px"===$("#overview-border").css("right")?t():e()}),window.onbeforeunload=function(){if(workflow&&i.workflow.has_changes)return"There are unsaved changes to your workflow which will be lost."},this.options.workflows.length>0&&$("#left").find(".toolMenu").append(this._buildToolPanelWorkflows()),$("div.toolSectionBody").hide(),$("div.toolSectionTitle > span").wrap("<a href='#'></a>");var s=null;$("div.toolSectionTitle").each(function(){var o=$(this).next("div.toolSectionBody");$(this).click(function(){o.is(":hidden")?(s&&s.slideUp("fast"),s=o,o.slideDown("fast")):(o.slideUp("fast"),s=null)})}),(0,x.default)("workflow-name","workflow-name",i.urls.rename_async,"new_name"),$("#workflow-tag").click(function(){return $(".tag-area").click(),!1}),(0,x.default)("workflow-annotation","workflow-annotation",i.urls.annotate_async,"new_annotation",25,!0,4)},_buildToolPanelWorkflows:function(){var o=this,e=$('<div class="toolSectionWrapper"><div class="toolSectionTitle"><a href="#"><span>Workflows</span></a></div><div class="toolSectionBody"><div class="toolSectionBg"/></div></div>');return _.each(this.options.workflows,function(t){if(t.id!==o.options.id){var i=new b.default.ButtonIcon({icon:"fa fa-copy",cls:"ui-button-icon-plain",tooltip:(0,h.default)("Copy and insert individual steps"),onclick:function(){t.step_count<2?o.copy_into_workflow(t.id,t.name):Galaxy.modal.show({title:(0,h.default)("Warning"),body:"This will copy "+t.step_count+" new steps into your workflow.",buttons:{Cancel:function(){Galaxy.modal.hide()},Copy:function(){Galaxy.modal.hide(),o.copy_into_workflow(t.id,t.name)}}})}}),a=$("<a/>").attr("href","#").html(t.name).on("click",function(){o.add_node_for_subworkflow(t.latest_id,t.name)});e.find(".toolSectionBg").append($("<div/>").addClass("toolTitle").append(a).append(i.$el))}}),e},copy_into_workflow:function(o){var e=this;this._workflowLoadAjax(o,{success:function(o){e.workflow.from_simple(o,!1);var t="";$.each(o.upgrade_messages,function(o,i){t+="<li>Step "+(parseInt(o,10)+1)+": "+e.workflow.nodes[o].name+"<ul>",$.each(i,function(o,e){t+="<li>"+e+"</li>"}),t+="</ul></li>"}),t?window.show_modal("Subworkflow embedded with changes","Problems were encountered loading this workflow (possibly a result of tool upgrades). Please review the following parameters and then save.<ul>"+t+"</ul>",{Continue:hide_modal}):hide_modal()},beforeSubmit:function(o){show_message("Importing workflow","progress")}})},reset:function(){this.workflow&&this.workflow.remove_all(),this.workflow=window.workflow_globals.workflow=new v.default(this,$("#canvas-container"))},scroll_to_nodes:function(){var o,e,t=$("#canvas-viewport"),i=$("#canvas-container");e=i.width()<t.width()?(t.width()-i.width())/2:0,o=i.height()<t.height()?(t.height()-i.height())/2:0,i.css({left:e,top:o})},_workflowLoadAjax:function(o,e){$.ajax(p.default.merge(e,{url:this.urls.load_workflow,data:{id:o,_:"true"},dataType:"json",cache:!1}))},_moduleInitAjax:function(o,e){var t=this;p.default.request({type:"POST",url:Galaxy.root+"api/workflows/build_module",data:e,success:function(e){o.init_field_data(e),o.update_field_data(e),t.workflow.activate_node(o)}})},add_node_for_tool:function(o,e){var t=this.workflow.create_node("tool",e,o);this._moduleInitAjax(t,{type:"tool",tool_id:o,_:"true"})},add_node_for_subworkflow:function(o,e){var t=this.workflow.create_node("subworkflow",e,o);this._moduleInitAjax(t,{type:"subworkflow",content_id:o,_:"true"})},add_node_for_module:function(o,e){var t=this.workflow.create_node(o,e);this._moduleInitAjax(t,{type:o,_:"true"})},display_file_list:function(o){var e="<select id='node_data_list' name='node_data_list'>";for(var t in o.output_terminals)e+="<option value='"+t+"'>"+t+"</option>";return e+="</select>"},showWorkflowParameters:function(){var o=/\$\{.+?\}/g,e=[],t=$("#workflow-parameters-container"),i=$("#workflow-parameters-box"),a="",n=[];$.each(this.workflow.nodes,function(t,i){i.config_form&&i.config_form.inputs&&p.default.deepeach(i.config_form.inputs,function(e){if("string"==typeof e.value){var t=e.value.match(o);t&&(n=n.concat(t))}}),i.post_job_actions&&$.each(i.post_job_actions,function(e,t){t.action_arguments&&$.each(t.action_arguments,function(e,t){var i=t.match(o);i&&(n=n.concat(i))})}),n&&$.each(n,function(o,t){-1===$.inArray(t,e)&&e.push(t)})}),e&&0!==e.length?($.each(e,function(o,e){a+="<div>"+e.substring(2,e.length-1)+"</div>"}),t.html(a),i.show()):(t.html(a),i.hide())},showAttributes:function(){$(".right-content").hide(),$("#edit-attributes").show()},showForm:function(o,e){var t="right-content",i=t+"-"+e.id,a=$("#"+t);if(o&&0==a.find("#"+i).length){var n=$('<div id="'+i+'" class="'+t+'"/>');if(o.node=e,o.workflow=this.workflow,o.datatypes=this.datatypes,o.icon=g.default[e.type],o.cls="ui-portlet-narrow",e){var s="tool"==e.type?"Tool":"Default";n.append(new y.default[s](o).form.$el),a.append(n)}else Galaxy.emit.debug("workflow-view::initialize()","Node not found in workflow.")}$("."+t).hide(),a.find("#"+i).show(),a.show(),a.scrollTop()},isSubType:function(o,e){return o=this.ext_to_type[o],e=this.ext_to_type[e],this.type_to_type[o]&&e in this.type_to_type[o]},prebuildNode:function(o,e,t){var i=this,a=$("<div class='toolForm toolFormInCanvas'/>"),n=$("<div class='toolFormTitle unselectable'><span class='nodeTitle'>"+e+"</div></div>");u(n.find(".nodeTitle"),o),a.append(n),a.css("left",$(window).scrollLeft()+20),a.css("top",$(window).scrollTop()+20),a.append($("<div class='toolFormBody'></div>"));var s=new k.default(this,{element:a});s.type=o,s.content_id=t;var l="<div><img height='16' align='middle' src='"+Galaxy.root+"static/images/loading_small_white_bg.gif'/> loading tool info...</div>";a.find(".toolFormBody").append(l);var r=$("<div class='buttons' style='float: right;'></div>");r.append($("<div/>").addClass("fa-icon-button fa fa-files-o").click(function(o){s.clone()})),r.append($("<div/>").addClass("fa-icon-button fa fa-times").click(function(o){s.destroy()})),a.appendTo("#canvas-container");var d=$("#canvas-container").position(),w=$("#canvas-container").parent(),f=a.width(),c=a.height();return a.css({left:-d.left+w.width()/2-f/2,top:-d.top+w.height()/2-c/2}),r.prependTo(a.find(".toolFormTitle")),f+=r.width()+10,a.css("width",f),a.bind("dragstart",function(){i.workflow.activate_node(s)}).bind("dragend",function(){i.workflow.node_changed(this),i.workflow.fit_canvas_to_nodes(),i.canvas_manager.draw_overview()}).bind("dragclickonly",function(){i.workflow.activate_node(s)}).bind("drag",function(o,e){var t=$(this).offsetParent().offset(),i=e.offsetX-t.left,a=e.offsetY-t.top;$(this).css({left:i,top:a}),$(this).find(".terminal").each(function(){this.terminal.redraw()})}),s}})});
\ No newline at end of file
diff --git a/static/scripts/mvc/workflow/workflow.js b/static/scripts/mvc/workflow/workflow.js
index ba2e972fcec..8857c55d7bb 100644
--- a/static/scripts/mvc/workflow/workflow.js
+++ b/static/scripts/mvc/workflow/workflow.js
@@ -1 +1 @@
-define("mvc/workflow/workflow",["exports","libs/toastr","mvc/tag","mvc/workflow/workflow-model","utils/query-string-parsing","utils/localization"],function(o,e,t,r,l,i){"use strict";function a(o){return o&&o.__esModule?o:{default:o}}Object.defineProperty(o,"__esModule",{value:!0});var n=function(o){if(o&&o.__esModule)return o;var e={};if(null!=o)for(var t in o)Object.prototype.hasOwnProperty.call(o,t)&&(e[t]=o[t]);return e.default=o,e}(e),s=a(t),d=a(r),c=a(l),w=a(i),f=Backbone.View.extend({tagName:"tr",initialize:function(){_.bindAll(this,"render","_rowTemplate","renderTagEditor","_templateActions","removeWorkflow","copyWorkflow"),n.options.timeOut=1500},events:{"click #show-in-tool-panel":"showInToolPanel","click #delete-workflow":"removeWorkflow","click #rename-workflow":"renameWorkflow","click #copy-workflow":"copyWorkflow"},render:function(){return $(this.el).html(this._rowTemplate()),this},showInToolPanel:function(){this.model.set("show_in_tool_panel",!this.model.get("show_in_tool_panel")),this.model.save(),window.location=Galaxy.root+"workflows/list"},removeWorkflow:function(){var o=this.model.get("name");window.confirm("Are you sure you want to delete workflow '"+o+"'?")&&(this.model.destroy({success:function(){n.success("Successfully deleted workflow '"+o+"'")}}),this.remove())},renameWorkflow:function(){var o=this.model.get("name"),e=window.prompt("Enter a new Name for workflow '"+o+"'",o);e&&(this.model.save({name:e},{success:function(){n.success("Successfully renamed workflow '"+o+"' to '"+e+"'")}}),this.render())},copyWorkflow:function(){var o=this,e=this.model.get("name");$.getJSON(this.model.urlRoot+"/"+this.model.id+"/download",function(t){var r="Copy of "+e,l=o.model.get("owner");l!=Galaxy.user.attributes.username&&(r+=" shared by user "+l),t.name=r,o.collection.create(t,{at:0,wait:!0,success:function(){n.success("Successfully copied workflow '"+e+"' to '"+r+"'")},error:function(o,e,t){n.error(t.errorThrown)}})}).error(function(o,e,t){n.error(o.responseJSON.err_msg)})},_rowTemplate:function(){var o=this.model.get("show_in_tool_panel"),e=this.model.id,t='<input id="show-in-tool-panel" type="checkbox" class="show-in-tool-panel" '+(o?'checked="'+o+'"':"")+' value="'+e+'">';return'<td><div class="dropdown"><button class="menubutton" type="button" data-toggle="dropdown">'+_.escape(this.model.get("name"))+'<span class="caret"></span></button>'+this._templateActions()+'</div></td><td><span><div class="'+e+' tags-display"></div></td><td>'+(this.model.get("owner")===Galaxy.user.attributes.username?"You":this.model.get("owner"))+"</span></td><td>"+this.model.get("number_of_steps")+"</td><td>"+(this.model.get("published")?"Yes":"No")+"</td><td>"+t+"</td>"},renderTagEditor:function(){var o=new s.default.TagsEditor({model:this.model,el:$.find("."+this.model.id+".tags-display"),workflow_mode:!0});o.toggle(!0),o.render()},_templateActions:function(){return this.model.get("owner")===Galaxy.user.attributes.username?'<ul class="dropdown-menu action-dpd"><li><a href="'+Galaxy.root+"workflow/editor?id="+this.model.id+'">Edit</a></li><li><a href="'+Galaxy.root+"workflows/run?id="+this.model.id+'">Run</a></li><li><a href="'+Galaxy.root+"workflow/sharing?id="+this.model.id+'">Share</a></li><li><a href="'+Galaxy.root+"api/workflows/"+this.model.id+'/download?format=json-download">Download</a></li><li><a id="copy-workflow" style="cursor: pointer;">Copy</a></li><li><a id="rename-workflow" style="cursor: pointer;">Rename</a></li><li><a href="'+Galaxy.root+"workflow/display_by_id?id="+this.model.id+'">View</a></li><li><a id="delete-workflow" style="cursor: pointer;">Delete</a></li></ul>':'<ul class="dropdown-menu action-dpd"><li><a href="'+Galaxy.root+"workflow/display_by_username_and_slug?username="+this.model.get("owner")+"&slug="+this.model.get("slug")+'">View</a></li><li><a href="'+Galaxy.root+"workflows/run?id="+this.model.id+'">Run</a></li><li><a id="copy-workflow" style="cursor: pointer;">Copy</a></li><li><a class="link-confirm-shared-'+this.model.id+'" href="'+Galaxy.root+"workflow/sharing?unshare_me=True&id="+this.model.id+'">Remove</a></li></ul>'}}),u=Backbone.View.extend({title:"Workflows",initialize:function(){this.setElement("<div/>"),_.bindAll(this,"adjustActiondropdown"),this.collection=new d.default.WorkflowCollection,this.collection.fetch().done(this.render()),this.collection.bind("add",this.appendItem),this.collection.on("sync",this.render,this)},events:{dragleave:"unhighlightDropZone",drop:"drop",dragover:function(o){$(".hidden_description_layer").addClass("dragover"),$(".menubutton").addClass("background-none"),o.preventDefault()}},unhighlightDropZone:function(){$(".hidden_description_layer").removeClass("dragover"),$(".menubutton").removeClass("background-none")},drop:function(o){this.unhighlightDropZone(),o.preventDefault();for(var e,t=o.dataTransfer.files,r=this,l=0;e=t[l];l++)r.readWorkflowFiles(e)},readWorkflowFiles:function(o){var e=this,t=new FileReader;t.onload=function(r){var l;try{l=JSON.parse(t.result)}catch(e){n.error("Could not read file '"+o.name+"'. Verify it is a valid Galaxy workflow"),l=null}l&&e.collection.create(l,{at:0,wait:!0,success:function(){n.success("Successfully imported workflow '"+l.name+"'")},error:function(o,e,t){n.error(t.errorThrown)}})},t.readAsText(o,"utf-8")},_showArgErrors:_.once(function(){var o=c.default.get("message");"error"===c.default.get("status")?n.error(_.escape(o||"Unknown Error, please report this to an administrator.")):o&&n.info(_.escape(o))}),render:function(){var o=this._templateHeader(),e=this._templateActionButtons(),t=this._templateWorkflowTable();this.$el.html(o+e+t);var r=this;_(this.collection.models).each(function(o){r.appendItem(o),r.confirmDelete(o)},this);return this.searchWorkflow(this.$(".search-wf"),this.$(".workflow-search tr"),3),this.adjustActiondropdown(),this._showArgErrors(),this},appendItem:function(o){var e=new f({model:o,collection:this.collection});$(".workflow-search").append(e.render().el),e.renderTagEditor()},confirmDelete:function(o){this.$(".link-confirm-shared-"+o.id).click(function(){return window.confirm("Are you sure you want to remove the shared workflow '"+o.attributes.name+"'?")})},searchWorkflow:function(o,e,t){o.on("keyup",function(){var o=$(this).val();if(o.length>=t){var r=new RegExp(o,"i");e.hide(),e.filter(function(){return r.test($(this).text())}).show()}else e.show()})},adjustActiondropdown:function(){$(this.el).on("show.bs.dropdown",function(){$(this.el).css("overflow","inherit")}),$(this.el).on("hide.bs.dropdown",function(){$(this.el).css("overflow","auto")})},_templateNoWorkflow:function(){return'<div class="wf-nodata"> You have no workflows. </div>'},_templateActionButtons:function(){return'<ul class="manage-table-actions"><li><input class="search-wf form-control" type="text" autocomplete="off" placeholder="search for workflow..."></li><li><a class="action-button fa fa-plus wf-action" id="new-workflow" title="Create new workflow" href="'+Galaxy.root+'workflows/create"></a></li><li><a class="action-button fa fa-upload wf-action" id="import-workflow" title="Upload or import workflow" href="'+Galaxy.root+'workflows/import_workflow"></a></li></ul>'},_templateWorkflowTable:function(){return'<table class="table colored"><thead><tr class="header"><th>Name</th><th>Tags</th><th>Owner</th><th># of Steps</th><th>Published</th><th>Show in tools panel</th></tr></thead><tbody class="workflow-search "><div class="hidden_description_layer"><p>Drop workflow files here to import</p></tbody></table></div>'},_templateHeader:function(){return'<div class="page-container"><div class="user-workflows wf"><div class="response-message"></div><h2>'+(0,w.default)("Your workflows")+"</h2></div></div>"}}),h=Backbone.View.extend({initialize:function(){this.setElement("<div/>"),this.render()},render:function(){var o=this;$.getJSON(Galaxy.root+"workflow/upload_import_workflow",function(e){o.$el.empty().append(o._mainTemplate(e))})},_mainTemplate:function(o){return"<div class='toolForm'><div class='toolFormTitle'>Import Galaxy workflow</div><div class='toolFormBody'><form name='import_workflow' id='import_workflow' action='"+Galaxy.root+"workflow/upload_import_workflow' enctype='multipart/form-data' method='POST'><div class='form-row'><label>Galaxy workflow URL:</label><input type='text' name='url' class='input-url' value='"+o.url+"' size='40'><div class='toolParamHelp' style='clear: both;'>If the workflow is accessible via a URL, enter the URL above and click <b>Import</b>.</div><div style='clear: both'></div></div><div class='form-row'><label>Galaxy workflow file:</label><div class='form-row-input'><input type='file' name='file_data' class='input-file'/></div><div class='toolParamHelp' style='clear: both;'>If the workflow is in a file on your computer, choose it and then click <b>Import</b>.</div><div style='clear: both'></div></div><div class='form-row'><input type='submit' class='primary-button wf-import' name='import_button' value='Import'></div></form><hr/><div class='form-row'><label>Import a Galaxy workflow from myExperiment:</label><div class='form-row-input'><a href='"+o.myexperiment_target_url+"'> Visit myExperiment</a></div><div class='toolParamHelp' style='clear: both;'>Click the link above to visit myExperiment and browse for Galaxy workflows.</div><div style='clear: both'></div></div></div></div>"}});o.default={View:u,ImportWorkflowView:h}});
\ No newline at end of file
+define("mvc/workflow/workflow",["exports","libs/toastr","mvc/tag","mvc/workflow/workflow-model","utils/query-string-parsing","utils/localization"],function(o,e,t,r,l,i){"use strict";function a(o){return o&&o.__esModule?o:{default:o}}Object.defineProperty(o,"__esModule",{value:!0});var n=function(o){if(o&&o.__esModule)return o;var e={};if(null!=o)for(var t in o)Object.prototype.hasOwnProperty.call(o,t)&&(e[t]=o[t]);return e.default=o,e}(e),s=a(t),d=a(r),c=a(l),w=a(i),f=Backbone.View.extend({tagName:"tr",initialize:function(){_.bindAll(this,"render","_rowTemplate","renderTagEditor","_templateActions","removeWorkflow","copyWorkflow"),n.options.timeOut=1500},events:{"click #show-in-tool-panel":"showInToolPanel","click #delete-workflow":"removeWorkflow","click #rename-workflow":"renameWorkflow","click #copy-workflow":"copyWorkflow"},render:function(){return $(this.el).html(this._rowTemplate()),this},showInToolPanel:function(){this.model.set("show_in_tool_panel",!this.model.get("show_in_tool_panel")),this.model.save(),window.location=Galaxy.root+"workflows/list"},removeWorkflow:function(){var o=this.model.get("name");window.confirm("Are you sure you want to delete workflow '"+o+"'?")&&(this.model.destroy({success:function(){n.success("Successfully deleted workflow '"+o+"'")}}),this.remove())},renameWorkflow:function(){var o=this.model.get("name"),e=window.prompt("Enter a new Name for workflow '"+o+"'",o);e&&(this.model.save({name:e},{success:function(){n.success("Successfully renamed workflow '"+o+"' to '"+e+"'")}}),this.render())},copyWorkflow:function(){var o=this,e=this.model.get("name");$.getJSON(this.model.urlRoot+"/"+this.model.id+"/download",function(t){var r="Copy of "+e,l=o.model.get("owner");l!=Galaxy.user.attributes.username&&(r+=" shared by user "+l),t.name=r,o.collection.create(t,{at:0,wait:!0,success:function(){n.success("Successfully copied workflow '"+e+"' to '"+r+"'")},error:function(o,e,t){n.error(t.errorThrown)}})}).error(function(o,e,t){n.error(o.responseJSON.err_msg)})},_rowTemplate:function(){var o=this.model.get("show_in_tool_panel"),e=this.model.id,t='<input id="show-in-tool-panel" type="checkbox" class="show-in-tool-panel" '+(o?'checked="'+o+'"':"")+' value="'+e+'">';return'<td><div class="dropdown"><button class="menubutton" type="button" data-toggle="dropdown">'+_.escape(this.model.get("name"))+'<span class="caret"></span></button>'+this._templateActions()+'</div></td><td><span><div class="'+e+' tags-display"></div></td><td>'+(this.model.get("owner")===Galaxy.user.attributes.username?"You":this.model.get("owner"))+"</span></td><td>"+this.model.get("number_of_steps")+"</td><td>"+(this.model.get("published")?"Yes":"No")+"</td><td>"+t+"</td>"},renderTagEditor:function(){var o=new s.default.TagsEditor({model:this.model,el:$.find("."+this.model.id+".tags-display"),workflow_mode:!0});o.toggle(!0),o.render()},_templateActions:function(){return this.model.get("owner")===Galaxy.user.attributes.username?'<ul class="dropdown-menu action-dpd"><li><a href="'+Galaxy.root+"workflow/editor?id="+this.model.id+'">Edit</a></li><li><a href="'+Galaxy.root+"workflows/run?id="+this.model.id+'">Run</a></li><li><a href="'+Galaxy.root+"workflow/sharing?id="+this.model.id+'">Share</a></li><li><a href="'+Galaxy.root+"api/workflows/"+this.model.id+'/download?format=json-download">Download</a></li><li><a id="copy-workflow" style="cursor: pointer;">Copy</a></li><li><a id="rename-workflow" style="cursor: pointer;">Rename</a></li><li><a href="'+Galaxy.root+"workflow/display_by_id?id="+this.model.id+'">View</a></li><li><a id="delete-workflow" style="cursor: pointer;">Delete</a></li></ul>':'<ul class="dropdown-menu action-dpd"><li><a href="'+Galaxy.root+"workflow/display_by_username_and_slug?username="+this.model.get("owner")+"&slug="+this.model.get("slug")+'">View</a></li><li><a href="'+Galaxy.root+"workflows/run?id="+this.model.id+'">Run</a></li><li><a id="copy-workflow" style="cursor: pointer;">Copy</a></li><li><a class="link-confirm-shared-'+this.model.id+'" href="'+Galaxy.root+"workflow/sharing?unshare_me=True&id="+this.model.id+'">Remove</a></li></ul>'}}),u=Backbone.View.extend({title:(0,w.default)("Workflows"),initialize:function(){this.setElement("<div/>"),_.bindAll(this,"adjustActiondropdown"),this.collection=new d.default.WorkflowCollection,this.collection.fetch().done(this.render()),this.collection.bind("add",this.appendItem),this.collection.on("sync",this.render,this)},events:{dragleave:"unhighlightDropZone",drop:"drop",dragover:function(o){$(".hidden_description_layer").addClass("dragover"),$(".menubutton").addClass("background-none"),o.preventDefault()}},unhighlightDropZone:function(){$(".hidden_description_layer").removeClass("dragover"),$(".menubutton").removeClass("background-none")},drop:function(o){this.unhighlightDropZone(),o.preventDefault();for(var e,t=o.dataTransfer.files,r=this,l=0;e=t[l];l++)r.readWorkflowFiles(e)},readWorkflowFiles:function(o){var e=this,t=new FileReader;t.onload=function(r){var l;try{l=JSON.parse(t.result)}catch(e){n.error("Could not read file '"+o.name+"'. Verify it is a valid Galaxy workflow"),l=null}l&&e.collection.create(l,{at:0,wait:!0,success:function(){n.success("Successfully imported workflow '"+l.name+"'")},error:function(o,e,t){n.error(t.errorThrown)}})},t.readAsText(o,"utf-8")},_showArgErrors:_.once(function(){var o=c.default.get("message");"error"===c.default.get("status")?n.error(_.escape(o||"Unknown Error, please report this to an administrator.")):o&&n.info(_.escape(o))}),render:function(){var o=this._templateHeader(),e=this._templateActionButtons(),t=this._templateWorkflowTable();this.$el.html(o+e+t);var r=this;_(this.collection.models).each(function(o){r.appendItem(o),r.confirmDelete(o)},this);return this.searchWorkflow(this.$(".search-wf"),this.$(".workflow-search tr"),3),this.adjustActiondropdown(),this._showArgErrors(),this},appendItem:function(o){var e=new f({model:o,collection:this.collection});$(".workflow-search").append(e.render().el),e.renderTagEditor()},confirmDelete:function(o){this.$(".link-confirm-shared-"+o.id).click(function(){return window.confirm("Are you sure you want to remove the shared workflow '"+o.attributes.name+"'?")})},searchWorkflow:function(o,e,t){o.on("keyup",function(){var o=$(this).val();if(o.length>=t){var r=new RegExp(o,"i");e.hide(),e.filter(function(){return r.test($(this).text())}).show()}else e.show()})},adjustActiondropdown:function(){$(this.el).on("show.bs.dropdown",function(){$(this.el).css("overflow","inherit")}),$(this.el).on("hide.bs.dropdown",function(){$(this.el).css("overflow","auto")})},_templateNoWorkflow:function(){return'<div class="wf-nodata"> You have no workflows. </div>'},_templateActionButtons:function(){return'<ul class="manage-table-actions"><li><input class="search-wf form-control" type="text" autocomplete="off" placeholder="search for workflow..."></li><li><a class="action-button fa fa-plus wf-action" id="new-workflow" title="Create new workflow" href="'+Galaxy.root+'workflows/create"></a></li><li><a class="action-button fa fa-upload wf-action" id="import-workflow" title="Upload or import workflow" href="'+Galaxy.root+'workflows/import_workflow"></a></li></ul>'},_templateWorkflowTable:function(){return'<table class="table colored"><thead><tr class="header"><th>Name</th><th>Tags</th><th>Owner</th><th># of Steps</th><th>Published</th><th>Show in tools panel</th></tr></thead><tbody class="workflow-search "><div class="hidden_description_layer"><p>Drop workflow files here to import</p></tbody></table></div>'},_templateHeader:function(){return'<div class="page-container"><div class="user-workflows wf"><div class="response-message"></div><h2>'+(0,w.default)("Your workflows")+"</h2></div></div>"}}),h=Backbone.View.extend({initialize:function(){this.setElement("<div/>"),this.render()},render:function(){var o=this;$.getJSON(Galaxy.root+"workflow/upload_import_workflow",function(e){o.$el.empty().append(o._mainTemplate(e))})},_mainTemplate:function(o){return"<div class='toolForm'><div class='toolFormTitle'>Import Galaxy workflow</div><div class='toolFormBody'><form name='import_workflow' id='import_workflow' action='"+Galaxy.root+"workflow/upload_import_workflow' enctype='multipart/form-data' method='POST'><div class='form-row'><label>Galaxy workflow URL:</label><input type='text' name='url' class='input-url' value='"+o.url+"' size='40'><div class='toolParamHelp' style='clear: both;'>If the workflow is accessible via a URL, enter the URL above and click <b>Import</b>.</div><div style='clear: both'></div></div><div class='form-row'><label>Galaxy workflow file:</label><div class='form-row-input'><input type='file' name='file_data' class='input-file'/></div><div class='toolParamHelp' style='clear: both;'>If the workflow is in a file on your computer, choose it and then click <b>Import</b>.</div><div style='clear: both'></div></div><div class='form-row'><input type='submit' class='primary-button wf-import' name='import_button' value='Import'></div></form><hr/><div class='form-row'><label>Import a Galaxy workflow from myExperiment:</label><div class='form-row-input'><a href='"+o.myexperiment_target_url+"'> Visit myExperiment</a></div><div class='toolParamHelp' style='clear: both;'>Click the link above to visit myExperiment and browse for Galaxy workflows.</div><div style='clear: both'></div></div></div></div>"}});o.default={View:u,ImportWorkflowView:h}});
\ No newline at end of file
diff --git a/static/scripts/nls/fr/locale.js b/static/scripts/nls/fr/locale.js
index 70bd3ebf18a..1d2f2435434 100644
--- a/static/scripts/nls/fr/locale.js
+++ b/static/scripts/nls/fr/locale.js
@@ -1 +1 @@
-define({"Analyze Data":"Analyse de données",Workflow:"Workflow","Shared Data":"Données partagées","Data Libraries":"Bibliothèque de données",Histories:"Historiques",Workflows:"Workflows",Visualizations:"Visualisations",Pages:"Pages",Visualization:"Visualisation","New Track Browser":"Nouveau Navigateur de Tracks/Pistes","Saved Visualizations":"Visualisations sauvegardées","Interactive Environments":"Environnements interactifs",Admin:"Admin",Help:"Aide",Support:"Assistance",Search:"Recherche","Mailing Lists":"Liste de diffusion",Videos:"Vidéos",Wiki:"Documentations","How to Cite Galaxy":"Comment citer Galaxy","Interactive Tours":"Guides interactifs",User:"Utilisateur",Login:"Authentification",Register:"Enregistrement","Login or Register":"Authentification et Enregistrement","Logged in as":"Authentifié en tant que",Preferences:"Préférences","Custom Builds":"Mes génomes Builds de référence",Logout:"Déconnexion","Saved Histories":"Historiques sauvegardés","Saved Datasets":"Jeux de données sauvegardés","Saved Pages":"Pages sauvegardées","Account and saved data":"Compte et données sauvegardées","Account registration or login":"Enregistrement ou authentification","Support, contact, and community":"Support,contact et communauté","Administer this Galaxy":"Outils Admin","Visualize datasets":"Visualiser les jeux de données","Access published resources":"Accéder aux données partagées","Chain tools into workflows":"Relier outils dans un workflow","Analysis home view":"Accueil analyse de données","History Lists":"Tableaux des historiques","Histories Shared with Me":"Historiques partagés avec moi","Current History":"Cet Historique","Create New":"Créer un nouveau","Copy History":"Copier l'Historique","Share or Publish":"Partager et publier","Show Structure":"Montrer la structure","Extract Workflow":"Extraire un Workflow","Delete Permanently":"Supprimer définitivement","Dataset Actions":"Actions sur les jeux de données","Copy Datasets":"Copier des jeux de données","Dataset Security":"Permissions/Sécurité","Resume Paused Jobs":"Reprendre les processus en pause","Collapse Expanded Datasets":"Réduire les données étendues","Unhide Hidden Datasets":"Afficher les données cachées","Delete Hidden Datasets":"Supprimer les données cachées","Purge Deleted Datasets":"Purger les données supprimées",Downloads:"Télécharger","Export Tool Citations":"Exporter les citations des outils","Export History to File":"Exporter l'Historique dans un fichier","Other Actions":"Autres actions","Import from File":"Importer depuis un fichier",Webhooks:"Webhooks","This history is empty":"Cet historique est vide","No matching datasets found":"Aucunes données correspondantes n'ont été trouvées","An error occurred while getting updates from the server":"Une erreur s'est produite lors de la réception des données depuis le serveur","Please contact a Galaxy administrator if the problem persists":"Veuillez contacter un administrateur de l'instance Galaxy si ce problème persiste","search datasets":"Rechercher des données","You are currently viewing a deleted history!":"Vous consultez actuellement un historique supprimé!","You are over your disk quota":"Vous avez dépassé votre quota d'espace disque","Tool execution is on hold until your disk usage drops below your allocated quota":"L'exécution de l'outil est en attente tant que votre utilisation d'espace disque dépasse le quota attribué",All:"Tout",None:"Aucun","For all selected":"Pour toute la sélection","Edit history tags":"Editer les mots-clés de l'historique","Edit history Annotation":"Editer l'annotation de l'historique","Click to rename history":"Cliquer pour renommer l'historique","Operations on multiple datasets":"Opérer sur plusieurs jeux de données en même temps","Hide datasets":"Cacher les jeux de données","Unhide datasets":"Afficher les jeux de données cachés","Delete datasets":"Supprimer les jeux de données","Undelete datasets":"Restaurer les jeux de données supprimés","Permanently delete datasets":"Supprimer définitivement les jeux de données","This will permanently remove the data in your datasets. Are you sure?":"Cela supprimera de manière permanente les données de votre historique. Êtes-vous certain?",Dataset:"Jeu de données",Annotation:"Annotation","This history is empty. Click 'Get Data' on the left tool menu to start":"Cet historique est vide. Cliquer sur 'Get Data' au niveau du menu d'outils à gauche pour démarrer","You must be logged in to create histories":"Vous devez être connecté pour créer un historique","load your own data":"Charger vos propres données","get data from an external source":"Charger des données depuis une source externe","Include Deleted Datasets":"Inclure les jeux de données supprimés","Include Hidden Datasets":"Inclure les jeux de données cachés","Unable to purge dataset":"Impossible de purger le jeu de données","Cannot display datasets removed from disk":"Impossible de visualiser les jeux de données supprimés du disque","This dataset must finish uploading before it can be viewed":"Le jeu de données doit être totalement téléversé avant de pouvoir être visualiser","This dataset is not yet viewable":"Ce jeu de données n'est pas visualisable","View data":"Voir les données",Download:"Télécharger","Download dataset":"Télécharger le jeu de données","Additional files":"Fichiers additionnels","View details":"Voir les détails","This is a new dataset and not all of its data are available yet":"Il s'agit d'un nouveau jeu de données et seule une partie des données est accessible pour le moment","You do not have permission to view this dataset":"Vous n'avez pas la permission de voir ce jeu de données","The job creating this dataset was cancelled before completion":"Le processus à l'origine de ce jeu de données a été annulé prématurément","This job is waiting to run":"Ce calcul est en attente de traitement","This dataset is currently uploading":"Ce jeu de données est en cours de téléversement","Metadata is being auto-detected":"Les métadonnées sont auto-détectées","This job is currently running":"Le traitement est en cours",'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':'Ce traitement est en pause. Utilisez le "Relancer les traitements en pause" dans le menu d\'historique pour le relancer',"An error occurred with this dataset":"Une erreur est survenue avec ce jeu de données","No data":"Aucune donnée","An error occurred setting the metadata for this dataset":"Une erreur est survenue pendant la récupération des métadonnées de ce jeu de données","There was an error getting the data for this dataset":"Il est survenu une erreur durant la récupération du contenu de ce jeu de données","This dataset has been deleted and removed from disk":"Ce jeu de données a été supprimé et effacé du disque","This dataset has been deleted":"Ce jeu de données a été supprimé","This dataset has been hidden":"Ce jeu de données a été caché",format:"format",database:"génome de référence","Edit attributes":"Editer les attributs","Cannot edit attributes of datasets removed from disk":"Impossible d'éditer les attributs de jeux de données effacés du disque","Undelete dataset to edit attributes":"Restaurer le jeu de données pour en éditer les attributs","This dataset must finish uploading before it can be edited":"Ce jeu de données doit être entièrement téléversé avant toute modification","This dataset is not yet editable":"Ce jeu de données n'est pas encore éditable",Delete:"Supprimer","Dataset is already deleted":"Le jeu de données est déjà supprimé","View or report this error":"Voir ou remonter cette erreur","Run this job again":"Exécuter ce traitement à nouveau",Visualize:"Visualiser","Visualize in":"Visualiser via","Undelete it":"Restaurer","Permanently remove it from disk":"Supprimer définitivement du disque","Unhide it":"Rendre visible","You may be able to":"Vous devriez être en mesure de","set it manually or retry auto-detection":"Traitez le manuellement ou retenter la détection automatique","Edit dataset tags":"Editer les mots-clés du jeu de données","Edit dataset annotation":"Editer les annotations du jeu de données",Tags:"Mots-clés","Edit annotation":"Editer les annotations"});
\ No newline at end of file
+define({"Analyze Data":"Analyse de données",Workflow:"Workflow","Shared Data":"Données partagées","Data Libraries":"Bibliothèque de données",Histories:"Historiques",Workflows:"Workflows",Visualizations:"Visualisations",Pages:"Pages",Visualization:"Visualisation","New Track Browser":"Nouveau Navigateur de Tracks/Pistes","Saved Visualizations":"Visualisations sauvegardées","Interactive Environments":"Environnements interactifs",Admin:"Admin",Help:"Aide",Support:"Assistance",Search:"Recherche","Mailing Lists":"Liste de diffusion",Videos:"Vidéos",Wiki:"Documentations","How to Cite Galaxy":"Comment citer Galaxy","Interactive Tours":"Guides interactifs",User:"Utilisateur",Login:"Authentification",Register:"Enregistrement","Login or Register":"Authentification et Enregistrement","Logged in as":"Authentifié en tant que",Preferences:"Préférences","Custom Builds":"Mes génomes Builds de référence",Logout:"Déconnexion","Saved Histories":"Historiques sauvegardés","Saved Datasets":"Jeux de données sauvegardés","Saved Pages":"Pages sauvegardées","Account and saved data":"Compte et données sauvegardées","Account registration or login":"Enregistrement ou authentification","Support, contact, and community":"Support,contact et communauté","Administer this Galaxy":"Outils Admin","Visualize datasets":"Visualiser les jeux de données","Access published resources":"Accéder aux données partagées","Chain tools into workflows":"Relier outils dans un workflow","Analysis home view":"Accueil analyse de données","History Lists":"Tableaux des historiques","Histories Shared with Me":"Historiques partagés avec moi","Current History":"Cet Historique","Create New":"Créer un nouveau","Copy History":"Copier l'Historique","Share or Publish":"Partager et publier","Show Structure":"Montrer la structure","Extract Workflow":"Extraire un Workflow","Delete Permanently":"Supprimer définitivement","Dataset Actions":"Actions sur les jeux de données","Copy Datasets":"Copier des jeux de données","Dataset Security":"Permissions/Sécurité","Resume Paused Jobs":"Reprendre les processus en pause","Collapse Expanded Datasets":"Réduire les données étendues","Unhide Hidden Datasets":"Afficher les données cachées","Delete Hidden Datasets":"Supprimer les données cachées","Purge Deleted Datasets":"Purger les données supprimées",Downloads:"Télécharger","Export Tool Citations":"Exporter les citations des outils","Export History to File":"Exporter l'Historique dans un fichier","Other Actions":"Autres actions","Import from File":"Importer depuis un fichier",Webhooks:"Webhooks","This history is empty":"Cet historique est vide","No matching datasets found":"Aucunes données correspondantes n'ont été trouvées","An error occurred while getting updates from the server":"Une erreur s'est produite lors de la réception des données depuis le serveur","Please contact a Galaxy administrator if the problem persists":"Veuillez contacter un administrateur de l'instance Galaxy si ce problème persiste","search datasets":"Rechercher des données","You are currently viewing a deleted history!":"Vous consultez actuellement un historique supprimé!","You are over your disk quota":"Vous avez dépassé votre quota d'espace disque","Tool execution is on hold until your disk usage drops below your allocated quota":"L'exécution de l'outil est en attente tant que votre utilisation d'espace disque dépasse le quota attribué",All:"Tout",None:"Aucun","For all selected":"Pour toute la sélection","Edit history tags":"Editer les mots-clés de l'historique","Edit history Annotation":"Editer l'annotation de l'historique","Click to rename history":"Cliquer pour renommer l'historique","Operations on multiple datasets":"Opérer sur plusieurs jeux de données en même temps","Hide datasets":"Cacher les jeux de données","Unhide datasets":"Afficher les jeux de données cachés","Delete datasets":"Supprimer les jeux de données","Undelete datasets":"Restaurer les jeux de données supprimés","Permanently delete datasets":"Supprimer définitivement les jeux de données","This will permanently remove the data in your datasets. Are you sure?":"Cela supprimera de manière permanente les données de votre historique. Êtes-vous certain?",Dataset:"Jeu de données",Annotation:"Annotation","This history is empty. Click 'Get Data' on the left tool menu to start":"Cet historique est vide. Cliquer sur 'Get Data' au niveau du menu d'outils à gauche pour démarrer","You must be logged in to create histories":"Vous devez être connecté pour créer un historique","load your own data":"Charger vos propres données","get data from an external source":"Charger des données depuis une source externe","Include Deleted Datasets":"Inclure les jeux de données supprimés","Include Hidden Datasets":"Inclure les jeux de données cachés","Unable to purge dataset":"Impossible de purger le jeu de données","Cannot display datasets removed from disk":"Impossible de visualiser les jeux de données supprimés du disque","This dataset must finish uploading before it can be viewed":"Le jeu de données doit être totalement téléversé avant de pouvoir être visualiser","This dataset is not yet viewable":"Ce jeu de données n'est pas visualisable","View data":"Voir les données",Download:"Télécharger","Download dataset":"Télécharger le jeu de données","Additional files":"Fichiers additionnels","View details":"Voir les détails","This is a new dataset and not all of its data are available yet":"Il s'agit d'un nouveau jeu de données et seule une partie des données est accessible pour le moment","You do not have permission to view this dataset":"Vous n'avez pas la permission de voir ce jeu de données","The job creating this dataset was cancelled before completion":"Le processus à l'origine de ce jeu de données a été annulé prématurément","This job is waiting to run":"Ce calcul est en attente de traitement","This dataset is currently uploading":"Ce jeu de données est en cours de téléversement","Metadata is being auto-detected":"Les métadonnées sont auto-détectées","This job is currently running":"Le traitement est en cours",'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':'Ce traitement est en pause. Utilisez le "Relancer les traitements en pause" dans le menu d\'historique pour le relancer',"An error occurred with this dataset":"Une erreur est survenue avec ce jeu de données","No data":"Aucune donnée","An error occurred setting the metadata for this dataset":"Une erreur est survenue pendant la récupération des métadonnées de ce jeu de données","There was an error getting the data for this dataset":"Il est survenu une erreur durant la récupération du contenu de ce jeu de données","This dataset has been deleted and removed from disk":"Ce jeu de données a été supprimé et effacé du disque","This dataset has been deleted":"Ce jeu de données a été supprimé","This dataset has been hidden":"Ce jeu de données a été caché",format:"format",database:"génome de référence","Edit attributes":"Editer les attributs","Cannot edit attributes of datasets removed from disk":"Impossible d'éditer les attributs de jeux de données effacés du disque","Undelete dataset to edit attributes":"Restaurer le jeu de données pour en éditer les attributs","This dataset must finish uploading before it can be edited":"Ce jeu de données doit être entièrement téléversé avant toute modification","This dataset is not yet editable":"Ce jeu de données n'est pas encore éditable",Delete:"Supprimer","Dataset is already deleted":"Le jeu de données est déjà supprimé","View or report this error":"Voir ou remonter cette erreur","Run this job again":"Exécuter ce traitement à nouveau",Visualize:"Visualiser","Visualize in":"Visualiser via","Undelete it":"Restaurer","Permanently remove it from disk":"Supprimer définitivement du disque","Unhide it":"Rendre visible","You may be able to":"Vous devriez être en mesure de","set it manually or retry auto-detection":"Traitez le manuellement ou retenter la détection automatique","Edit dataset tags":"Editer les mots-clés du jeu de données","Edit dataset annotation":"Editer les annotations du jeu de données","Tool Help":!1,"Reset passwords":!1,"Search Tool Shed":!1,"Monitor installing repositories":!1,"Manage installed tools":!1,"Reset metadata":!1,"Download local tool":!1,"Tool lineage":!1,"Reload a tool's configuration":!1,"Review tool migration stages":!1,"View Tool Error Logs":!1,"Manage Display Whitelist":!1,"Manage Tool Dependencies":!1,Users:!1,Groups:!1,"API keys":!1,"Impersonate a user":!1,Data:!1,Quotas:!1,Roles:!1,"Local data":!1,"Form Definitions":!1,"Enable/Disable Scratchbook":!1,"Show/Hide Scratchbook":!1,Tags:"Mots-clés","Edit annotation":"Editer les annotations",Subscript:!1,Superscript:!1,Trackster:!1,Visualize:!1,"Any additional comments you can provide regarding what you were doing at the time of the bug.":!1,"Your email address":!1,Report:!1,"Error Report":!1,"Dataset details":!1,"Save permissions.":!1,"Change the datatype to a new type.":!1,"Convert the datatype to a new format.":!1,"Save attributes of the dataset.":!1,"Change data type":!1,"Edit dataset attributes":!1,"Save permissions":!1,"Manage dataset permissions":!1,"Change datatype":!1,"Convert datatype":!1,"Convert to new format":!1,Save:!1,Permissions:!1,Datatypes:!1,Convert:!1,Attributes:!1,Visualization:!1,"Import into History":!1,"Location Details":!1,"Deleting selected items":!1,"Please select folders or files":!1,"Please enter paths to import":!1,"Adding datasets from your history":!1,"Create New Folder":!1,"Create New Library":!1,Tours:!1,"Click here to sign out of all sessions.":!1,"Add or remove custom builds using history datasets.":!1,"Associate OpenIDs with your account.":!1,"Customize your Toolbox by displaying or omitting sets of Tools.":!1,"Access your current API key or create a new one.":!1,"Enable or disable the communication feature to chat with other users.":!1,"Allows you to change your login credentials.":!1,"User Preferences":!1,"Sign out":!1,"Manage custom builds":!1,"Manage OpenIDs":!1,"Manage Toolbox filters":!1,"Manage API key":!1,"Set dataset permissions for new histories":!1,"Change communication settings":!1,"Change password":!1,"Manage information":!1,Histories:!1,"Configured Galaxy Tool Sheds":!1,"Repository Installation Queue":!1,"Repository Status":!1,"Workflows Missing Tools":!1,"See in Tool Shed":!1,Requirements:!1,Download:!1,Share:!1,Search:!1,"Workflow submission failed":!1,"Run workflow":!1,"Job submission failed":!1,Execute:!1,"Tool request failed":!1,Workflows:!1,"Copy and insert individual steps":!1,Warning:!1,"An email notification will be sent when the job has completed.":!1,"Add a step label.":!1,"Assign columns":!1,"Delete this repeat block":!1,placeholder:!1,Repeat:!1,"Browse GenomeSpace":!1,Browse:!1,Error:!1,Close:!1,"Download from web or upload from disk":!1,Collection:!1,Composite:!1,Regular:!1,"Upload configuration":!1,"FTP files":!1,Reset:!1,Pause:!1,Start:!1,"Choose FTP file":!1,"Choose local file":!1,Build:!1,"Choose FTP files":!1,"Choose local files":!1,Select:!1,"Create a collection of paired datasets":!1,"View all histories":!1,"History options":!1,"Refresh history":!1,"View error logs":!1,"View migration stages":!1,"View lineage":!1,"Manage dependencies":!1,"Manage whitelist":!1,"Manage metadata":!1,"Manage tools":!1,"Monitor installation":!1,"Install new tools":!1,"Tool Management":!1,Forms:!1,Roles:!1,Groups:!1,Quotas:!1,Users:!1,"User Management":!1,"Manage jobs":!1,"Display applications":!1,"Data tables":!1,"Data types":!1,Server:!1,"Could Not Save":!1,"Saving...":!1,Settings:!1,"Add tracks":!1,"New Visualization":!1,"Add Data to Saved Visualization":!1,"Close visualization":!1,Circster:!1,Bookmarks:!1,"Add group":!1,"Remove parameter from tree":!1,"Add parameter to tree":!1,Remove:!1,"Select datasets for new tracks":!1,Libraries:!1,"Zoom out":!1,"Zoom in":!1,"Phyloviz Help":!1,"Save visualization":!1,"PhyloViz Settings":!1,Title:!1,"Filtering Dataset":!1,"Filter Dataset":!1,"Show individual tracks":!1,"Trackster Error":!1,"Tool parameter space visualization":!1,Tool:!1,"Set as overview":!1,"Set display mode":!1,Filters:!1,"Show composite track":!1,"Edit settings":!1,"Test title":!1,"Test Title":!1,"Test button":!1,title:!1,"Create new Build":!1,"Delete custom build.":!1,"Provide the data source.":!1,"Next in History":!1,"Previous in History":!1,"Chat online":!1,"Multiple collections":!1,"Dataset collections":!1,"Dataset collection":!1,"Multiple datasets":!1,"Single dataset":!1,"Download from URL or upload files from disk":!1,"tool tooltip":!1});
\ No newline at end of file
diff --git a/static/scripts/nls/locale.js b/static/scripts/nls/locale.js
index edddee851df..3d63d1f3461 100644
--- a/static/scripts/nls/locale.js
+++ b/static/scripts/nls/locale.js
@@ -1 +1 @@
-define({root:{"Analyze Data":!1,Workflow:!1,"Shared Data":!1,"Data Libraries":!1,Histories:!1,Workflows:!1,Visualizations:!1,Pages:!1,Visualization:!1,"New Track Browser":!1,"Saved Visualizations":!1,"Interactive Environments":!1,Admin:!1,Help:!1,Support:!1,Search:!1,"Mailing Lists":!1,Videos:!1,Wiki:!1,"How to Cite Galaxy":!1,"Interactive Tours":!1,User:!1,Login:!1,Register:!1,"Login or Register":!1,"Logged in as":!1,Preferences:!1,"Custom Builds":!1,Logout:!1,"Saved Histories":!1,"Saved Datasets":!1,"Saved Pages":!1,"Account and saved data":!1,"Account registration or login":!1,"Support, contact, and community":!1,"Administer this Galaxy":!1,"Visualize datasets":!1,"Access published resources":!1,"Chain tools into workflows":!1,"Analysis home view":!1,"History Lists":!1,"Histories Shared with Me":!1,"Current History":!1,"Create New":!1,"Copy History":!1,"Share or Publish":!1,"Show Structure":!1,"Extract Workflow":!1,"Delete Permanently":!1,"Dataset Actions":!1,"Copy Datasets":!1,"Dataset Security":!1,"Resume Paused Jobs":!1,"Collapse Expanded Datasets":!1,"Unhide Hidden Datasets":!1,"Delete Hidden Datasets":!1,"Purge Deleted Datasets":!1,Downloads:!1,"Export Tool Citations":!1,"Export History to File":!1,"Other Actions":!1,"Import from File":!1,Webhooks:!1,"This history is empty":!1,"No matching datasets found":!1,"An error occurred while getting updates from the server":!1,"Please contact a Galaxy administrator if the problem persists":!1,"search datasets":!1,"You are currently viewing a deleted history!":!1,"You are over your disk quota":!1,"Tool execution is on hold until your disk usage drops below your allocated quota":!1,All:!1,None:!1,"For all selected":!1,"Edit history tags":!1,"Edit history Annotation":!1,"Click to rename history":!1,"Operations on multiple datasets":!1,"Hide datasets":!1,"Unhide datasets":!1,"Delete datasets":!1,"Undelete datasets":!1,"Permanently delete datasets":!1,"This will permanently remove the data in your datasets. Are you sure?":!1,Dataset:!1,Annotation:!1,"This history is empty. Click 'Get Data' on the left tool menu to start":!1,"You must be logged in to create histories":!1,"Unable to purge dataset":!1,"Cannot display datasets removed from disk":!1,"This dataset must finish uploading before it can be viewed":!1,"This dataset is not yet viewable":!1,"View data":!1,Download:!1,"Download dataset":!1,"Additional files":!1,"View details":!1,"This is a new dataset and not all of its data are available yet":!1,"You do not have permission to view this dataset":!1,"The job creating this dataset was cancelled before completion":!1,"This job is waiting to run":!1,"This dataset is currently uploading":!1,"Metadata is being auto-detected":!1,"This job is currently running":!1,'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':!1,"An error occurred with this dataset":!1,"No data":!1,"An error occurred setting the metadata for this dataset":!1,"There was an error getting the data for this dataset":!1,"This dataset has been deleted and removed from disk":!1,"This dataset has been deleted":!1,"This dataset has been hidden":!1,format:!1,database:!1,"Edit attributes":!1,"Cannot edit attributes of datasets removed from disk":!1,"Undelete dataset to edit attributes":!1,"This dataset must finish uploading before it can be edited":!1,"This dataset is not yet editable":!1,Delete:!1,"Dataset is already deleted":!1,"View or report this error":!1,"Run this job again":!1,Visualize:!1,"Visualize in":!1,"Undelete it":!1,"Permanently remove it from disk":!1,"Unhide it":!1,"You may be able to":!1,"set it manually or retry auto-detection":!1,"Edit dataset tags":!1,"Edit dataset annotation":!1,"Tool Help":!1,"Search Tool Shed":!1,"Monitor installing repositories":!1,"Manage installed tools":!1,"Reset metadata":!1,"Download local tool":!1,"Tool lineage":!1,"Reload a tool's configuration":!1,"Review tool migration stages":!1,"View Tool Error Logs":!1,"Manage Display Whitelist":!1,"Manage Tool Dependencies":!1,Users:!1,Groups:!1,"API keys":!1,"Impersonate a user":!1,Data:!1,Quotas:!1,Roles:!1,"Local data":!1,"Form Definitions":!1,"Enable/Disable Scratchbook":!1,"Show/Hide Scratchbook":!1,Tags:!1,"Edit annotation":!1},ja:!0,fr:!0,zh:!0});
\ No newline at end of file
+define({root:{"Analyze Data":!1,Workflow:!1,"Shared Data":!1,"Data Libraries":!1,Histories:!1,Workflows:!1,Visualizations:!1,Pages:!1,Visualization:!1,"New Track Browser":!1,"Saved Visualizations":!1,"Interactive Environments":!1,Admin:!1,Help:!1,Support:!1,Search:!1,"Mailing Lists":!1,Videos:!1,Wiki:!1,"How to Cite Galaxy":!1,"Interactive Tours":!1,User:!1,Login:!1,Register:!1,"Login or Register":!1,"Logged in as":!1,Preferences:!1,"Custom Builds":!1,Logout:!1,"Saved Histories":!1,"Saved Datasets":!1,"Saved Pages":!1,"Account and saved data":!1,"Account registration or login":!1,"Support, contact, and community":!1,"Administer this Galaxy":!1,"Visualize datasets":!1,"Access published resources":!1,"Chain tools into workflows":!1,"Analysis home view":!1,"History Lists":!1,"Histories Shared with Me":!1,"Current History":!1,"Create New":!1,"Copy History":!1,"Share or Publish":!1,"Show Structure":!1,"Extract Workflow":!1,"Delete Permanently":!1,"Dataset Actions":!1,"Copy Datasets":!1,"Dataset Security":!1,"Resume Paused Jobs":!1,"Collapse Expanded Datasets":!1,"Unhide Hidden Datasets":!1,"Delete Hidden Datasets":!1,"Purge Deleted Datasets":!1,Downloads:!1,"Export Tool Citations":!1,"Export History to File":!1,"Other Actions":!1,"Import from File":!1,Webhooks:!1,"This history is empty":!1,"No matching datasets found":!1,"An error occurred while getting updates from the server":!1,"Please contact a Galaxy administrator if the problem persists":!1,"search datasets":!1,"You are currently viewing a deleted history!":!1,"You are over your disk quota":!1,"Tool execution is on hold until your disk usage drops below your allocated quota":!1,All:!1,None:!1,"For all selected":!1,"Edit history tags":!1,"Edit history Annotation":!1,"Click to rename history":!1,"Operations on multiple datasets":!1,"Hide datasets":!1,"Unhide datasets":!1,"Delete datasets":!1,"Undelete datasets":!1,"Permanently delete datasets":!1,"This will permanently remove the data in your datasets. 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\ No newline at end of file
diff --git a/static/scripts/viz/circster.js b/static/scripts/viz/circster.js
index b9d7f72884f..865a938bd04 100644
--- a/static/scripts/viz/circster.js
+++ b/static/scripts/viz/circster.js
@@ -1 +1 @@
-define("viz/circster",["exports","libs/underscore","libs/d3","viz/visualization","utils/utils","utils/config","mvc/ui/icon-button","libs/farbtastic"],function(t,e,a,n,i,r,s){"use strict";function o(t){return t&&t.__esModule?t:{default:t}}function l(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var a in t)Object.prototype.hasOwnProperty.call(t,a)&&(e[a]=t[a]);return e.default=t,e}Object.defineProperty(t,"__esModule",{value:!0});var c=l(e),u=l(a),d=o(n),_=o(i),g=o(r),h=o(s),f=Backbone.Model.extend({is_visible:function(t,e){var a=t.getBoundingClientRect(),n=$("svg")[0].getBoundingClientRect();return!(a.right<0||a.left>n.right||a.bottom<0||a.top>n.bottom)}}),m={drawTicks:function(t,e,a,n,i){var r=t.append("g").selectAll("g").data(e).enter().append("g").selectAll("g").data(a).enter().append("g").attr("class","tick").attr("transform",function(t){return"rotate("+(180*t.angle/Math.PI-90)+")translate("+t.radius+",0)"}),s=[],o=[],l=function(t){return t.angle>Math.PI?"end":null};return 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e=this.model.get("config");e.get("arc_dataset_height").on("change:value",this.update_track_bounds,this),e.get("track_gap").on("change:value",this.update_track_bounds,this)},get_circular_tracks:function(){return this.model.get("drawables").filter(function(t){return"DiagonalHeatmapTrack"!==t.get("track_type")})},get_chord_tracks:function(){return this.model.get("drawables").filter(function(t){return"DiagonalHeatmapTrack"===t.get("track_type")})},get_tracks_bounds:function(){var t=this.get_circular_tracks(),e=this.model.get("config").get_value("arc_dataset_height"),a=this.model.get("config").get_value("track_gap"),n=Math.min(this.$el.width(),this.$el.height())-20,i=n/2-t.length*(e+a)+a-this.label_arc_height,r=u.range(i,n/2,e+a);return c.map(r,function(t){return[t,t+e]})},render:function(){var t=this,e=t.$el.width(),a=t.$el.height(),n=this.get_circular_tracks(),i=this.get_chord_tracks(),r=t.model.get("config").get_value("total_gap"),s=this.get_tracks_bounds(),o=u.select(t.$el[0]).append("svg").attr("width",e).attr("height",a).attr("pointer-events","all").append("svg:g").call(u.behavior.zoom().on("zoom",function(){var e=u.event.scale;o.attr("transform","translate("+u.event.translate+") scale("+e+")"),t.scale!==e&&(t.zoom_drag_timeout&&clearTimeout(t.zoom_drag_timeout),t.zoom_drag_timeout=setTimeout(function(){},400))})).attr("transform","translate("+e/2+","+a/2+")").append("svg:g").attr("class","tracks");this.circular_views=n.map(function(e,a){var n=new w({el:o.append("g")[0],track:e,radius_bounds:s[a],genome:t.genome,total_gap:r});return n.render(),n}),this.chords_views=i.map(function(e){var a=new x({el:o.append("g")[0],track:e,radius_bounds:s[0],genome:t.genome,total_gap:r});return a.render(),a});var l=this.circular_views[this.circular_views.length-1].radius_bounds[1],c=[l,l+this.label_arc_height];this.label_track_view=new k({el:o.append("g")[0],track:new p,radius_bounds:c,genome:t.genome,total_gap:r}),this.label_track_view.render()},add_track:function(t){var e=this.model.get("config").get_value("total_gap");if("DiagonalHeatmapTrack"===t.get("track_type")){var a=this.circular_views[0].radius_bounds,n=new x({el:u.select("g.tracks").append("g")[0],track:t,radius_bounds:a,genome:this.genome,total_gap:e});n.render(),this.chords_views.push(n)}else{var i=this.get_tracks_bounds();c.each(this.circular_views,function(t,e){t.update_radius_bounds(i[e])}),c.each(this.chords_views,function(t){t.update_radius_bounds(i[0])});var r=this.circular_views.length,s=new w({el:u.select("g.tracks").append("g")[0],track:t,radius_bounds:i[r],genome:this.genome,total_gap:e});s.render(),this.circular_views.push(s)}},remove_track:function(t,e,a){var n=this.circular_views[a.index];this.circular_views.splice(a.index,1),n.$el.remove();var i=this.get_tracks_bounds();c.each(this.circular_views,function(t,e){t.update_radius_bounds(i[e])})},update_track_bounds:function(){var t=this.get_tracks_bounds();c.each(this.circular_views,function(e,a){e.update_radius_bounds(t[a])}),c.each(this.chords_views,function(e){e.update_radius_bounds(t[0])})}}),b=Backbone.View.extend({tagName:"g",initialize:function(t){this.bg_stroke="#ddd",this.loading_bg_fill="#ffc",this.bg_fill="#ddd",this.total_gap=t.total_gap,this.track=t.track,this.radius_bounds=t.radius_bounds,this.genome=t.genome,this.chroms_layout=this._chroms_layout(),this.data_bounds=[],this.scale=1,this.parent_elt=u.select(this.$el[0])},get_fill_color:function(){var t=this.track.get("config").get_value("block_color");return t||(t=this.track.get("config").get_value("color")),t},render:function(){var t=this.parent_elt,e=this.chroms_layout,a=u.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]),n=t.selectAll("g").data(e).enter().append("svg:g").append("path").attr("d",a).attr("class","chrom-background").style("stroke",this.bg_stroke).style("fill",this.loading_bg_fill);n.append("title").text(function(t){return t.data.chrom});var i=this,r=i.track.get("data_manager"),s=!r||r.data_is_ready();$.when(s).then(function(){$.when(i._render_data(t)).then(function(){n.style("fill",i.bg_fill),i.render_labels()})})},render_labels:function(){},update_radius_bounds:function(t){this.radius_bounds=t;var e=u.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]);this.parent_elt.selectAll("g>path.chrom-background").transition().duration(1e3).attr("d",e),this._transition_chrom_data(),this._transition_labels()},update_scale:function(t){var e=this.scale;if(this.scale=t,!(t<=e)){var a=this,n=new f;return 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null===t}),s=t.get("config").get_value("color");a.each(function(t,e){u.select(this).transition().duration(1e3).style("stroke",s).style("fill",s).attr("d",r[e])})})}},_transition_labels:function(){},_update_data_bounds:function(t){this.data_bounds;this.data_bounds=t||this.get_data_bounds(this.track.get("data_manager").get_genome_wide_data(this.genome)),this._transition_chrom_data()},_render_data:function(t){var e=this,a=this.chroms_layout,n=this.track,i=$.Deferred();return $.when(n.get("data_manager").get_genome_wide_data(this.genome)).then(function(r){e.data_bounds=e.get_data_bounds(r),n.get("config").set_value("min_value",e.data_bounds[0],{silent:!0}),n.get("config").set_value("max_value",e.data_bounds[1],{silent:!0});var s=c.zip(a,r);c.each(s,function(a){var n=a[0],i=a[1];return e._render_chrom_data(t,n,i)});var o=e.get_fill_color();e.parent_elt.selectAll("path.chrom-data").style("stroke",o).style("fill",o),i.resolve(t)}),i},_render_chrom_data:function(t,e,a){},_get_path_function:function(t,e){},_chroms_layout:function(){var t=this.genome.get_chroms_info(),e=u.layout.pie().value(function(t){return t.len}).sort(null)(t),a=2*Math.PI*this.total_gap/t.length;return c.map(e,function(t,e){var n=t.endAngle-a;return t.endAngle=n>t.startAngle?n:t.startAngle,t})}}),k=b.extend({initialize:function(t){b.prototype.initialize.call(this,t),this.innerRadius=this.radius_bounds[0],this.radius_bounds[0]=this.radius_bounds[1],this.bg_stroke="#fff",this.bg_fill="#fff",this.min_arc_len=.05},_render_data:function(t){var e=this,a=t.selectAll("g");a.selectAll("path").attr("id",function(t){return"label-"+t.data.chrom}),a.append("svg:text").filter(function(t){return t.endAngle-t.startAngle>e.min_arc_len}).attr("text-anchor","middle").append("svg:textPath").attr("class","chrom-label").attr("xlink:href",function(t){return"#label-"+t.data.chrom}).attr("startOffset","25%").text(function(t){return t.data.chrom});var n=c.filter(this.chroms_layout,function(t){return t.endAngle-t.startAngle>e.min_arc_len});this.drawTicks(this.parent_elt,n,function(t){var a=(t.endAngle-t.startAngle)/t.value,n=u.range(0,t.value,25e6).map(function(n,i){return{radius:e.innerRadius,angle:n*a+t.startAngle,label:0===i?0:i%3?null:e.formatNum(n)}});return n.length<4&&(n[n.length-1].label=e.formatNum(Math.round((n[n.length-1].angle-t.startAngle)/a))),n},function(t){return t.angle>Math.PI?"rotate(180)translate(-16)":null})}});c.extend(k.prototype,m);var y=b.extend({initialize:function(t){b.prototype.initialize.call(this,t);var e=this.track.get("config");e.get("min_value").on("change:value",this._update_min_max,this),e.get("max_value").on("change:value",this._update_min_max,this),e.get("color").on("change:value",this._transition_chrom_data,this)},_update_min_max:function(){var t=this.track.get("config"),e=[t.get_value("min_value"),t.get_value("max_value")];this._update_data_bounds(e),this.parent_elt.selectAll(".min_max").text(function(t,a){return e[a]})},_quantile:function(t,e){return t.sort(u.ascending),u.quantile(t,e)},_render_chrom_data:function(t,e,a){var n=this._get_path_function(e,a);return n?t.datum(a.data).append("path").attr("class","chrom-data").attr("chrom",e.data.chrom).attr("d",n):null},_get_path_function:function(t,e){if("string"==typeof e||!e.data||0===e.data.length)return null;var a=u.scale.linear().domain(this.data_bounds).range(this.radius_bounds).clamp(!0),n=u.scale.linear().domain([0,e.data.length]).range([t.startAngle,t.endAngle]),i=u.svg.line.radial().interpolate("linear").radius(function(t){return a(t[1])}).angle(function(t,e){return n(e)});return u.svg.area.radial().interpolate(i.interpolate()).innerRadius(a(0)).outerRadius(i.radius()).angle(i.angle())},render_labels:function(){var t=this,e=this.drawTicks(this.parent_elt,[this.chroms_layout[0]],this._data_bounds_ticks_fn(),function(){return"rotate(90)"},!0).classed("min_max",!0);c.each(e,function(e){$(e).click(function(){new g.default.ConfigSettingCollectionView({collection:t.track.get("config")}).render_in_modal("Configure Track")})})},_transition_labels:function(){if(0!==this.data_bounds.length){var t=this,e=c.filter(this.chroms_layout,function(t){return t.endAngle-t.startAngle>.08}),a=c.filter(e,function(t,e){return e%3==0}),n=c.flatten(c.map(a,function(e){return t._data_bounds_ticks_fn()(e)}));this.parent_elt.selectAll("g.tick").data(n).transition().attr("transform",function(t){return"rotate("+(180*t.angle/Math.PI-90)+")translate("+t.radius+",0)"})}},_data_bounds_ticks_fn:function(){var t=this;return visibleChroms=0,function(e){return[{radius:t.radius_bounds[0],angle:e.startAngle,label:t.formatNum(t.data_bounds[0])},{radius:t.radius_bounds[1],angle:e.startAngle,label:t.formatNum(t.data_bounds[1])}]}},get_data_bounds:function(t){}});c.extend(y.prototype,m);var w=y.extend({get_data_bounds:function(t){var e=c.flatten(c.map(t,function(t){return t?c.map(t.data,function(t){return parseInt(t[1],10)||0}):0}));return[c.min(e),this._quantile(e,.98)||c.max(e)]}}),x=b.extend({render:function(){var t=this;$.when(t.track.get("data_manager").data_is_ready()).then(function(){$.when(t.track.get("data_manager").get_genome_wide_data(t.genome)).then(function(e){var a=[],n=t.genome.get_chroms_info();c.each(e,function(e,i){var r=n[i].chrom,s=c.map(e.data,function(e){var a=t._get_region_angle(r,e[1]),n=t._get_region_angle(e[3],e[4]);return{source:{startAngle:a,endAngle:a+.01},target:{startAngle:n,endAngle:n+.01}}});a=a.concat(s)}),t.parent_elt.append("g").attr("class","chord").selectAll("path").data(a).enter().append("path").style("fill",t.get_fill_color()).attr("d",u.svg.chord().radius(t.radius_bounds[0])).style("opacity",1)})})},update_radius_bounds:function(t){this.radius_bounds=t,this.parent_elt.selectAll("path").transition().attr("d",u.svg.chord().radius(this.radius_bounds[0]))},_get_region_angle:function(t,e){var a=c.find(this.chroms_layout,function(e){return e.data.chrom===t});return a.endAngle-(a.endAngle-a.startAngle)*(a.data.len-e)/a.data.len}}),A=Backbone.View.extend({initialize:function(){_.default.cssLoadFile("static/style/circster.css");var t=new d.default.Genome(galaxy_config.app.genome),e=new d.default.GenomeVisualization(galaxy_config.app.viz_config);e.get("config").add([{key:"arc_dataset_height",label:"Arc Dataset Height",type:"int",value:25,view:"circster"},{key:"track_gap",label:"Gap Between Tracks",type:"int",value:5,view:"circster"},{key:"total_gap",label:"Gap [0-1]",type:"float",value:.4,view:"circster",hidden:!0}]),new v({el:$("#center .unified-panel-body"),genome:t,model:e}).render(),$("#center .unified-panel-header-inner").append(galaxy_config.app.viz_config.title+" "+galaxy_config.app.viz_config.dbkey);var a=h.default.create_icon_buttons_menu([{icon_class:"plus-button",title:"Add tracks",on_click:function(){d.default.select_datasets({dbkey:e.get("dbkey")},function(t){e.add_tracks(t)})}},{icon_class:"gear",title:"Settings",on_click:function(){new g.default.ConfigSettingCollectionView({collection:e.get("config")}).render_in_modal("Configure Visualization")}},{icon_class:"disk--arrow",title:"Save",on_click:function(){Galaxy.modal.show({title:"Saving...",body:"progress"}),$.ajax({url:Galaxy.root+"visualization/save",type:"POST",dataType:"json",data:{id:e.get("vis_id"),title:e.get("title"),dbkey:e.get("dbkey"),type:"trackster",vis_json:JSON.stringify(e)}}).success(function(t){Galaxy.modal.hide(),e.set("vis_id",t.vis_id)}).error(function(){Galaxy.modal.show({title:"Could Not Save",body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})}},{icon_class:"cross-circle",title:"Close",on_click:function(){window.location=Galaxy.root+"visualizations/list"}}],{tooltip_config:{placement:"bottom"}});a.$el.attr("style","float: right"),$("#center .unified-panel-header-inner").append(a.$el),$(".menu-button").tooltip({placement:"bottom"})}});t.default={GalaxyApp:A}});
\ No newline at end of file
+define("viz/circster",["exports","utils/localization","libs/underscore","libs/d3","viz/visualization","utils/utils","utils/config","mvc/ui/icon-button","libs/farbtastic"],function(t,e,a,n,i,r,s,o){"use strict";function l(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var a in t)Object.prototype.hasOwnProperty.call(t,a)&&(e[a]=t[a]);return e.default=t,e}function c(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var u=c(e),d=l(a),_=l(n),g=c(i),h=c(r),f=c(s),m=c(o),p=Backbone.Model.extend({is_visible:function(t,e){var a=t.getBoundingClientRect(),n=$("svg")[0].getBoundingClientRect();return!(a.right<0||a.left>n.right||a.bottom<0||a.top>n.bottom)}}),v={drawTicks:function(t,e,a,n,i){var r=t.append("g").selectAll("g").data(e).enter().append("g").selectAll("g").data(a).enter().append("g").attr("class","tick").attr("transform",function(t){return"rotate("+(180*t.angle/Math.PI-90)+")translate("+t.radius+",0)"}),s=[],o=[],l=function(t){return t.angle>Math.PI?"end":null};return i?(s=[0,0,0,-4],o=[4,0,"",".35em"],l=null):(s=[1,0,4,0],o=[0,4,".35em",""]),r.append("line").attr("x1",s[0]).attr("y1",s[1]).attr("x2",s[2]).attr("y1",s[3]).style("stroke","#000"),r.append("text").attr("x",o[0]).attr("y",o[1]).attr("dx",o[2]).attr("dy",o[3]).attr("text-anchor",l).attr("transform",n).text(function(t){return t.label})},formatNum:function(t,e){if(void 0===e&&(e=2),null===t)return null;var a=null;if(Math.abs(t)<1)a=t.toPrecision(e);else{var n=Math.round(t.toPrecision(e));(t=Math.abs(t))<1e3?a=n:t<1e6?a=Math.round((n/1e3).toPrecision(3)).toFixed(0)+"K":t<1e9&&(a=Math.round((n/1e6).toPrecision(3)).toFixed(0)+"M")}return a}},b=Backbone.Model.extend({}),k=Backbone.View.extend({className:"circster",initialize:function(t){this.genome=t.genome,this.label_arc_height=50,this.scale=1,this.circular_views=null,this.chords_views=null,this.model.get("drawables").on("add",this.add_track,this),this.model.get("drawables").on("remove",this.remove_track,this);var e=this.model.get("config");e.get("arc_dataset_height").on("change:value",this.update_track_bounds,this),e.get("track_gap").on("change:value",this.update_track_bounds,this)},get_circular_tracks:function(){return this.model.get("drawables").filter(function(t){return"DiagonalHeatmapTrack"!==t.get("track_type")})},get_chord_tracks:function(){return this.model.get("drawables").filter(function(t){return"DiagonalHeatmapTrack"===t.get("track_type")})},get_tracks_bounds:function(){var t=this.get_circular_tracks(),e=this.model.get("config").get_value("arc_dataset_height"),a=this.model.get("config").get_value("track_gap"),n=Math.min(this.$el.width(),this.$el.height())-20,i=n/2-t.length*(e+a)+a-this.label_arc_height,r=_.range(i,n/2,e+a);return d.map(r,function(t){return[t,t+e]})},render:function(){var t=this,e=t.$el.width(),a=t.$el.height(),n=this.get_circular_tracks(),i=this.get_chord_tracks(),r=t.model.get("config").get_value("total_gap"),s=this.get_tracks_bounds(),o=_.select(t.$el[0]).append("svg").attr("width",e).attr("height",a).attr("pointer-events","all").append("svg:g").call(_.behavior.zoom().on("zoom",function(){var e=_.event.scale;o.attr("transform","translate("+_.event.translate+") scale("+e+")"),t.scale!==e&&(t.zoom_drag_timeout&&clearTimeout(t.zoom_drag_timeout),t.zoom_drag_timeout=setTimeout(function(){},400))})).attr("transform","translate("+e/2+","+a/2+")").append("svg:g").attr("class","tracks");this.circular_views=n.map(function(e,a){var n=new A({el:o.append("g")[0],track:e,radius_bounds:s[a],genome:t.genome,total_gap:r});return n.render(),n}),this.chords_views=i.map(function(e){var a=new z({el:o.append("g")[0],track:e,radius_bounds:s[0],genome:t.genome,total_gap:r});return a.render(),a});var l=this.circular_views[this.circular_views.length-1].radius_bounds[1],c=[l,l+this.label_arc_height];this.label_track_view=new w({el:o.append("g")[0],track:new b,radius_bounds:c,genome:t.genome,total_gap:r}),this.label_track_view.render()},add_track:function(t){var e=this.model.get("config").get_value("total_gap");if("DiagonalHeatmapTrack"===t.get("track_type")){var a=this.circular_views[0].radius_bounds,n=new z({el:_.select("g.tracks").append("g")[0],track:t,radius_bounds:a,genome:this.genome,total_gap:e});n.render(),this.chords_views.push(n)}else{var i=this.get_tracks_bounds();d.each(this.circular_views,function(t,e){t.update_radius_bounds(i[e])}),d.each(this.chords_views,function(t){t.update_radius_bounds(i[0])});var r=this.circular_views.length,s=new A({el:_.select("g.tracks").append("g")[0],track:t,radius_bounds:i[r],genome:this.genome,total_gap:e});s.render(),this.circular_views.push(s)}},remove_track:function(t,e,a){var n=this.circular_views[a.index];this.circular_views.splice(a.index,1),n.$el.remove();var i=this.get_tracks_bounds();d.each(this.circular_views,function(t,e){t.update_radius_bounds(i[e])})},update_track_bounds:function(){var t=this.get_tracks_bounds();d.each(this.circular_views,function(e,a){e.update_radius_bounds(t[a])}),d.each(this.chords_views,function(e){e.update_radius_bounds(t[0])})}}),y=Backbone.View.extend({tagName:"g",initialize:function(t){this.bg_stroke="#ddd",this.loading_bg_fill="#ffc",this.bg_fill="#ddd",this.total_gap=t.total_gap,this.track=t.track,this.radius_bounds=t.radius_bounds,this.genome=t.genome,this.chroms_layout=this._chroms_layout(),this.data_bounds=[],this.scale=1,this.parent_elt=_.select(this.$el[0])},get_fill_color:function(){var t=this.track.get("config").get_value("block_color");return t||(t=this.track.get("config").get_value("color")),t},render:function(){var t=this.parent_elt,e=this.chroms_layout,a=_.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]),n=t.selectAll("g").data(e).enter().append("svg:g").append("path").attr("d",a).attr("class","chrom-background").style("stroke",this.bg_stroke).style("fill",this.loading_bg_fill);n.append("title").text(function(t){return t.data.chrom});var i=this,r=i.track.get("data_manager"),s=!r||r.data_is_ready();$.when(s).then(function(){$.when(i._render_data(t)).then(function(){n.style("fill",i.bg_fill),i.render_labels()})})},render_labels:function(){},update_radius_bounds:function(t){this.radius_bounds=t;var e=_.svg.arc().innerRadius(this.radius_bounds[0]).outerRadius(this.radius_bounds[1]);this.parent_elt.selectAll("g>path.chrom-background").transition().duration(1e3).attr("d",e),this._transition_chrom_data(),this._transition_labels()},update_scale:function(t){var e=this.scale;if(this.scale=t,!(t<=e)){var a=this,n=new p;return this.parent_elt.selectAll("path.chrom-data").filter(function(t,e){return n.is_visible(this)}).each(function(e,n){var i,r=_.select(this),s=r.attr("chrom"),o=a.genome.get_chrom_region(s);a.track.get("data_manager").can_get_more_detailed_data(o)&&(i=a.track.get("data_manager").get_more_detailed_data(o,"Coverage",0,t),$.when(i).then(function(t){r.remove(),a._update_data_bounds();var e=d.find(a.chroms_layout,function(t){return t.data.chrom===s}),n=a.get_fill_color();a._render_chrom_data(a.parent_elt,e,t).style("stroke",n).style("fill",n)}))}),a}},_transition_chrom_data:function(){var t=this.track,e=this.chroms_layout,a=this.parent_elt.selectAll("g>path.chrom-data");if(a[0].length>0){var n=this;$.when(t.get("data_manager").get_genome_wide_data(this.genome)).then(function(i){var r=d.reject(d.map(i,function(t,a){var i=null,r=n._get_path_function(e[a],t);return r&&(i=r(t.data)),i}),function(t){return null===t}),s=t.get("config").get_value("color");a.each(function(t,e){_.select(this).transition().duration(1e3).style("stroke",s).style("fill",s).attr("d",r[e])})})}},_transition_labels:function(){},_update_data_bounds:function(t){this.data_bounds;this.data_bounds=t||this.get_data_bounds(this.track.get("data_manager").get_genome_wide_data(this.genome)),this._transition_chrom_data()},_render_data:function(t){var e=this,a=this.chroms_layout,n=this.track,i=$.Deferred();return $.when(n.get("data_manager").get_genome_wide_data(this.genome)).then(function(r){e.data_bounds=e.get_data_bounds(r),n.get("config").set_value("min_value",e.data_bounds[0],{silent:!0}),n.get("config").set_value("max_value",e.data_bounds[1],{silent:!0});var s=d.zip(a,r);d.each(s,function(a){var n=a[0],i=a[1];return e._render_chrom_data(t,n,i)});var o=e.get_fill_color();e.parent_elt.selectAll("path.chrom-data").style("stroke",o).style("fill",o),i.resolve(t)}),i},_render_chrom_data:function(t,e,a){},_get_path_function:function(t,e){},_chroms_layout:function(){var t=this.genome.get_chroms_info(),e=_.layout.pie().value(function(t){return t.len}).sort(null)(t),a=2*Math.PI*this.total_gap/t.length;return d.map(e,function(t,e){var n=t.endAngle-a;return t.endAngle=n>t.startAngle?n:t.startAngle,t})}}),w=y.extend({initialize:function(t){y.prototype.initialize.call(this,t),this.innerRadius=this.radius_bounds[0],this.radius_bounds[0]=this.radius_bounds[1],this.bg_stroke="#fff",this.bg_fill="#fff",this.min_arc_len=.05},_render_data:function(t){var e=this,a=t.selectAll("g");a.selectAll("path").attr("id",function(t){return"label-"+t.data.chrom}),a.append("svg:text").filter(function(t){return t.endAngle-t.startAngle>e.min_arc_len}).attr("text-anchor","middle").append("svg:textPath").attr("class","chrom-label").attr("xlink:href",function(t){return"#label-"+t.data.chrom}).attr("startOffset","25%").text(function(t){return t.data.chrom});var n=d.filter(this.chroms_layout,function(t){return t.endAngle-t.startAngle>e.min_arc_len});this.drawTicks(this.parent_elt,n,function(t){var a=(t.endAngle-t.startAngle)/t.value,n=_.range(0,t.value,25e6).map(function(n,i){return{radius:e.innerRadius,angle:n*a+t.startAngle,label:0===i?0:i%3?null:e.formatNum(n)}});return n.length<4&&(n[n.length-1].label=e.formatNum(Math.round((n[n.length-1].angle-t.startAngle)/a))),n},function(t){return t.angle>Math.PI?"rotate(180)translate(-16)":null})}});d.extend(w.prototype,v);var x=y.extend({initialize:function(t){y.prototype.initialize.call(this,t);var e=this.track.get("config");e.get("min_value").on("change:value",this._update_min_max,this),e.get("max_value").on("change:value",this._update_min_max,this),e.get("color").on("change:value",this._transition_chrom_data,this)},_update_min_max:function(){var t=this.track.get("config"),e=[t.get_value("min_value"),t.get_value("max_value")];this._update_data_bounds(e),this.parent_elt.selectAll(".min_max").text(function(t,a){return e[a]})},_quantile:function(t,e){return t.sort(_.ascending),_.quantile(t,e)},_render_chrom_data:function(t,e,a){var n=this._get_path_function(e,a);return n?t.datum(a.data).append("path").attr("class","chrom-data").attr("chrom",e.data.chrom).attr("d",n):null},_get_path_function:function(t,e){if("string"==typeof e||!e.data||0===e.data.length)return null;var a=_.scale.linear().domain(this.data_bounds).range(this.radius_bounds).clamp(!0),n=_.scale.linear().domain([0,e.data.length]).range([t.startAngle,t.endAngle]),i=_.svg.line.radial().interpolate("linear").radius(function(t){return a(t[1])}).angle(function(t,e){return n(e)});return _.svg.area.radial().interpolate(i.interpolate()).innerRadius(a(0)).outerRadius(i.radius()).angle(i.angle())},render_labels:function(){var t=this,e=this.drawTicks(this.parent_elt,[this.chroms_layout[0]],this._data_bounds_ticks_fn(),function(){return"rotate(90)"},!0).classed("min_max",!0);d.each(e,function(e){$(e).click(function(){new f.default.ConfigSettingCollectionView({collection:t.track.get("config")}).render_in_modal("Configure Track")})})},_transition_labels:function(){if(0!==this.data_bounds.length){var t=this,e=d.filter(this.chroms_layout,function(t){return t.endAngle-t.startAngle>.08}),a=d.filter(e,function(t,e){return e%3==0}),n=d.flatten(d.map(a,function(e){return t._data_bounds_ticks_fn()(e)}));this.parent_elt.selectAll("g.tick").data(n).transition().attr("transform",function(t){return"rotate("+(180*t.angle/Math.PI-90)+")translate("+t.radius+",0)"})}},_data_bounds_ticks_fn:function(){var t=this;return visibleChroms=0,function(e){return[{radius:t.radius_bounds[0],angle:e.startAngle,label:t.formatNum(t.data_bounds[0])},{radius:t.radius_bounds[1],angle:e.startAngle,label:t.formatNum(t.data_bounds[1])}]}},get_data_bounds:function(t){}});d.extend(x.prototype,v);var A=x.extend({get_data_bounds:function(t){var e=d.flatten(d.map(t,function(t){return t?d.map(t.data,function(t){return parseInt(t[1],10)||0}):0}));return[d.min(e),this._quantile(e,.98)||d.max(e)]}}),z=y.extend({render:function(){var t=this;$.when(t.track.get("data_manager").data_is_ready()).then(function(){$.when(t.track.get("data_manager").get_genome_wide_data(t.genome)).then(function(e){var a=[],n=t.genome.get_chroms_info();d.each(e,function(e,i){var r=n[i].chrom,s=d.map(e.data,function(e){var a=t._get_region_angle(r,e[1]),n=t._get_region_angle(e[3],e[4]);return{source:{startAngle:a,endAngle:a+.01},target:{startAngle:n,endAngle:n+.01}}});a=a.concat(s)}),t.parent_elt.append("g").attr("class","chord").selectAll("path").data(a).enter().append("path").style("fill",t.get_fill_color()).attr("d",_.svg.chord().radius(t.radius_bounds[0])).style("opacity",1)})})},update_radius_bounds:function(t){this.radius_bounds=t,this.parent_elt.selectAll("path").transition().attr("d",_.svg.chord().radius(this.radius_bounds[0]))},_get_region_angle:function(t,e){var a=d.find(this.chroms_layout,function(e){return e.data.chrom===t});return a.endAngle-(a.endAngle-a.startAngle)*(a.data.len-e)/a.data.len}}),M=Backbone.View.extend({initialize:function(){h.default.cssLoadFile("static/style/circster.css");var t=new g.default.Genome(galaxy_config.app.genome),e=new g.default.GenomeVisualization(galaxy_config.app.viz_config);e.get("config").add([{key:"arc_dataset_height",label:"Arc Dataset Height",type:"int",value:25,view:"circster"},{key:"track_gap",label:"Gap Between Tracks",type:"int",value:5,view:"circster"},{key:"total_gap",label:"Gap [0-1]",type:"float",value:.4,view:"circster",hidden:!0}]),new k({el:$("#center .unified-panel-body"),genome:t,model:e}).render(),$("#center .unified-panel-header-inner").append(galaxy_config.app.viz_config.title+" "+galaxy_config.app.viz_config.dbkey);var a=m.default.create_icon_buttons_menu([{icon_class:"plus-button",title:(0,u.default)("Add tracks"),on_click:function(){g.default.select_datasets({dbkey:e.get("dbkey")},function(t){e.add_tracks(t)})}},{icon_class:"gear",title:(0,u.default)("Settings"),on_click:function(){new f.default.ConfigSettingCollectionView({collection:e.get("config")}).render_in_modal("Configure Visualization")}},{icon_class:"disk--arrow",title:(0,u.default)("Save"),on_click:function(){Galaxy.modal.show({title:(0,u.default)("Saving..."),body:"progress"}),$.ajax({url:Galaxy.root+"visualization/save",type:"POST",dataType:"json",data:{id:e.get("vis_id"),title:e.get("title"),dbkey:e.get("dbkey"),type:"trackster",vis_json:JSON.stringify(e)}}).success(function(t){Galaxy.modal.hide(),e.set("vis_id",t.vis_id)}).error(function(){Galaxy.modal.show({title:(0,u.default)("Could Not Save"),body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})}},{icon_class:"cross-circle",title:(0,u.default)("Close"),on_click:function(){window.location=Galaxy.root+"visualizations/list"}}],{tooltip_config:{placement:"bottom"}});a.$el.attr("style","float: right"),$("#center .unified-panel-header-inner").append(a.$el),$(".menu-button").tooltip({placement:"bottom"})}});t.default={GalaxyApp:M}});
\ No newline at end of file
diff --git a/static/scripts/viz/phyloviz.js b/static/scripts/viz/phyloviz.js
index ca915725974..b67c7e3d80c 100644
--- a/static/scripts/viz/phyloviz.js
+++ b/static/scripts/viz/phyloviz.js
@@ -1 +1 @@
-define("viz/phyloviz",["exports","libs/d3","viz/visualization","mvc/dataset/data","mvc/ui/icon-button"],function(e,t,n,i,o){"use strict";function a(e){return e&&e.__esModule?e:{default:e}}function l(){function e(t,n,i,o){var a=t.children,r=0,h=t.dist||c;return h=h>1?1:h,t.dist=h,t.y0=null!==o?o.y0+h*l:d,a?(a.forEach(function(o){o.parent=t,r+=e(o,n,i,t)}),t.x0=r/a.length):(t.x0=s*i,s+=1),t.x=t.x0,t.y=t.y0,t.x0}var t=this,n=r.layout.hierarchy().sort(null).value(null),i=360,o="Linear",a=18,l=200,s=0,c=.5,d=50;return t.leafHeight=function(e){return void 0===e?a:(a=e,t)},t.layoutMode=function(e){return void 0===e?o:(o=e,t)},t.layoutAngle=function(e){return void 0===e?i:isNaN(e)||e<0||e>360?t:(i=e,t)},t.separation=function(e){return void 0===e?l:(l=e,t)},t.links=function(e){return r.layout.tree().links(e)},t.nodes=function(l,r){"[object Array]"===toString.call(l)&&(l=l[0]);var c=n.call(t,l,r),d=[],h=0,u=0;return window._d=l,window._nodes=c,c.forEach(function(e){h=e.depth>h?e.depth:h,d.push(e)}),d.forEach(function(e){e.children||(u+=1,e.depth=h)}),a="Circular"===o?i/u:a,s=0,e(d[0],h,a,null),d},t}Object.defineProperty(e,"__esModule",{value:!0});var r=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}(t),s=a(n),c=a(i),d=a(o),h=Backbone.View.extend({className:"UserMenuBase",isAcceptableValue:function(e,t,n){var i=e.val(),o=e.attr("displayLabel")||e.attr("id").replace("phyloViz","");return function(e){return!isNaN(parseFloat(e))&&isFinite(e)}(i)?i>n?(alert(o+" is too large."),!1):!(i<t)||(alert(o+" is too small."),!1):(alert(o+" is not a number!"),!1)},hasIllegalJsonCharacters:function(e){return-1!==e.val().search(/"|'|\\/)&&(alert("Named fields cannot contain these illegal characters: double quote(\"), single guote('), or back slash(\\). "),!0)}}),u=s.default.Visualization.extend({defaults:{layout:"Linear",separation:250,leafHeight:18,type:"phyloviz",title:"Title",scaleFactor:1,translate:[0,0],fontSize:12,selectedNode:null,nodeAttrChangedTime:0},initialize:function(e){this.set("dataset",new c.default.Dataset({id:e.dataset_id}))},root:{},toggle:function(e){void 0!==e&&(e.children?(e._children=e.children,e.children=null):(e.children=e._children,e._children=null))},toggleAll:function(e){e.children&&0!==e.children.length&&(e.children.forEach(this.toggleAll),toggle(e))},getData:function(){return this.root},save:function(){function e(t){delete t.parent,t._selected&&delete t._selected,t.children&&t.children.forEach(e),t._children&&t._children.forEach(e)}e(this.root);var t=jQuery.extend(!0,{},this.attributes);return t.selectedNode=null,show_message("Saving to Galaxy","progress"),$.ajax({url:this.url(),type:"POST",dataType:"json",data:{config:JSON.stringify(t),type:"phyloviz"},success:function(e){hide_modal()}})}}),f=Backbone.View.extend({defaults:{nodeRadius:4.5},stdInit:function(e){var t=this;t.model.on("change:separation change:leafHeight change:fontSize change:nodeAttrChangedTime",t.updateAndRender,t),t.vis=e.vis,t.i=0,t.maxDepth=-1,t.width=e.width,t.height=e.height},updateAndRender:function(e){r.select(".vis");var t=this;e=e||t.model.root,t.renderNodes(e),t.renderLinks(e),t.addTooltips()},renderLinks:function(e){var t=this,n=(t.diagonal,t.duration,t.layoutMode,t.vis.selectAll("g.completeLink").data(t.tree.links(t.nodes),function(e){return e.target.id})),i=function(e){e.pos0=e.source.y0+" "+e.source.x0,e.pos1=e.source.y0+" "+e.target.x0,e.pos2=e.target.y0+" "+e.target.x0};n.enter().insert("svg:g","g.node").attr("class","completeLink").append("svg:path").attr("class","link").attr("d",function(e){return i(e),"M "+e.pos0+" L "+e.pos1}),n.transition().duration(500).select("path.link").attr("d",function(e){return i(e),"M "+e.pos0+" L "+e.pos1+" L "+e.pos2});n.exit().remove()},selectNode:function(e){var t=this;r.selectAll("g.node").classed("selectedHighlight",function(t){return e.id===t.id&&(e._selected?(delete e._selected,!1):(e._selected=!0,!0))}),t.model.set("selectedNode",e),$("#phyloVizSelectedNodeName").val(e.name),$("#phyloVizSelectedNodeDist").val(e.dist),$("#phyloVizSelectedNodeAnnotation").val(e.annotation||"")},addTooltips:function(){$(".tooltip").remove(),$(".node").attr("data-original-title",function(){var e=this.__data__,t=e.annotation||"None";return e?(e.name?e.name+"<br/>":"")+"Dist: "+e.dist+" <br/>Annotation1: "+t+(e.bootstrap?"<br/>Confidence level: "+Math.round(100*e.bootstrap):""):""}).tooltip({placement:"top",trigger:"hover"})}}).extend({initialize:function(e){var t=this;t.margins=e.margins,t.layoutMode="Linear",t.stdInit(e),t.layout(),t.updateAndRender(t.model.root)},layout:function(){var e=this;e.tree=(new l).layoutMode("Linear"),e.diagonal=r.svg.diagonal().projection(function(e){return[e.y,e.x]})},renderNodes:function(e){var t=this,n=t.model.get("fontSize")+"px";t.tree.separation(t.model.get("separation")).leafHeight(t.model.get("leafHeight"));var i=t.tree.separation(t.model.get("separation")).nodes(t.model.root),o=t.vis.selectAll("g.node").data(i,function(e){return e.name+e.id||(e.id=++t.i)});t.nodes=i,t.duration=500;var a=o.enter().append("svg:g").attr("class","node").on("dblclick",function(){r.event.stopPropagation()}).on("click",function(e){if(r.event.altKey)t.selectNode(e);else{if(e.children&&0===e.children.length)return;t.model.toggle(e),t.updateAndRender(e)}});"[object Array]"===toString.call(e)&&(e=e[0]),a.attr("transform",function(t){return"translate("+e.y0+","+e.x0+")"}),a.append("svg:circle").attr("r",1e-6).style("fill",function(e){return e._children?"lightsteelblue":"#fff"}),a.append("svg:text").attr("class","nodeLabel").attr("x",function(e){return e.children||e._children?-10:10}).attr("dy",".35em").attr("text-anchor",function(e){return e.children||e._children?"end":"start"}).style("fill-opacity",1e-6);var l=o.transition().duration(500);l.attr("transform",function(e){return"translate("+e.y+","+e.x+")"}),l.select("circle").attr("r",t.defaults.nodeRadius).style("fill",function(e){return e._children?"lightsteelblue":"#fff"}),l.select("text").style("fill-opacity",1).style("font-size",n).text(function(e){return e.name&&""!==e.name?e.name:e.bootstrap?Math.round(100*e.bootstrap):""});var s=o.exit().transition().duration(500).remove();s.select("circle").attr("r",1e-6),s.select("text").style("fill-opacity",1e-6),i.forEach(function(e){e.x0=e.x,e.y0=e.y})}}),p=Backbone.View.extend({className:"phyloviz",initialize:function(e){var t=this;t.MIN_SCALE=.05,t.MAX_SCALE=5,t.MAX_DISPLACEMENT=500,t.margins=[10,60,10,80],t.width=$("#PhyloViz").width(),t.height=$("#PhyloViz").height(),t.radius=t.width,t.data=e.data,$(window).resize(function(){t.width=$("#PhyloViz").width(),t.height=$("#PhyloViz").height(),t.render()}),t.phyloTree=new u(e.config),t.phyloTree.root=t.data,t.zoomFunc=r.behavior.zoom().scaleExtent([t.MIN_SCALE,t.MAX_SCALE]),t.zoomFunc.translate(t.phyloTree.get("translate")),t.zoomFunc.scale(t.phyloTree.get("scaleFactor")),t.navMenu=new g(t),t.settingsMenu=new v({phyloTree:t.phyloTree}),t.nodeSelectionView=new y({phyloTree:t.phyloTree}),t.search=new m,setTimeout(function(){t.zoomAndPan()},1e3)},render:function(){var e=this;$("#PhyloViz").empty(),e.mainSVG=r.select("#PhyloViz").append("svg:svg").attr("width",e.width).attr("height",e.height).attr("pointer-events","all").call(e.zoomFunc.on("zoom",function(){e.zoomAndPan()})),e.boundingRect=e.mainSVG.append("svg:rect").attr("class","boundingRect").attr("width",e.width).attr("height",e.height).attr("stroke","black").attr("fill","white"),e.vis=e.mainSVG.append("svg:g").attr("class","vis"),e.layoutOptions={model:e.phyloTree,width:e.width,height:e.height,vis:e.vis,margins:e.margins},$("#title").text("Phylogenetic Tree from "+e.phyloTree.get("title")+":");new f(e.layoutOptions)},zoomAndPan:function(e){var t,n;void 0!==e&&(t=e.zoom,n=e.translate);var i=this,o=i.zoomFunc.scale(),a=i.zoomFunc.translate(),l="",s="";switch(t){case"reset":o=1,a=[0,0];break;case"+":o*=1.1;break;case"-":o*=.9;break;default:"number"==typeof t?o=t:null!==r.event&&(o=r.event.scale)}if(!(o<i.MIN_SCALE||o>i.MAX_SCALE)){if(i.zoomFunc.scale(o),l="translate("+i.margins[3]+","+i.margins[0]+") scale("+o+")",null!==r.event)s="translate("+r.event.translate+")";else{if(void 0!==n){var c=n.split(",")[0],d=n.split(",")[1];isNaN(c)||isNaN(d)||(a=[a[0]+parseFloat(c),a[1]+parseFloat(d)])}i.zoomFunc.translate(a),s="translate("+a+")"}i.phyloTree.set("scaleFactor",o),i.phyloTree.set("translate",a),i.vis.attr("transform",s+l)}},reloadViz:function(){var e=this,t=$("#phylovizNexSelector :selected").val();$.getJSON(e.phyloTree.get("dataset").url(),{tree_index:t,data_type:"raw_data"},function(t){e.data=t.data,e.config=t,e.render()})}}),g=Backbone.View.extend({initialize:function(e){var t=this;t.phylovizView=e,$("#panelHeaderRightBtns").empty(),$("#phyloVizNavBtns").empty(),$("#phylovizNexSelector").off(),t.initNavBtns(),t.initRightHeaderBtns(),$("#phylovizNexSelector").off().on("change",function(){t.phylovizView.reloadViz()})},initRightHeaderBtns:function(){var e=this,t=d.default.create_icon_buttons_menu([{icon_class:"gear",title:"PhyloViz Settings",on_click:function(){$("#SettingsMenu").show(),e.settingsMenu.updateUI()}},{icon_class:"disk",title:"Save visualization",on_click:function(){var t=$("#phylovizNexSelector option:selected").text();t&&e.phylovizView.phyloTree.set("title",t),e.phylovizView.phyloTree.save()}},{icon_class:"chevron-expand",title:"Search / Edit Nodes",on_click:function(){$("#nodeSelectionView").show()}},{icon_class:"information",title:"Phyloviz Help",on_click:function(){window.open("https://galaxyproject.org/learn/visualization/phylogenetic-tree/")}}],{tooltip_config:{placement:"bottom"}});$("#panelHeaderRightBtns").append(t.$el)},initNavBtns:function(){var e=this,t=d.default.create_icon_buttons_menu([{icon_class:"zoom-in",title:"Zoom in",on_click:function(){e.phylovizView.zoomAndPan({zoom:"+"})}},{icon_class:"zoom-out",title:"Zoom out",on_click:function(){e.phylovizView.zoomAndPan({zoom:"-"})}},{icon_class:"arrow-circle",title:"Reset Zoom/Pan",on_click:function(){e.phylovizView.zoomAndPan({zoom:"reset"})}}],{tooltip_config:{placement:"bottom"}});$("#phyloVizNavBtns").append(t.$el)}}),v=h.extend({className:"Settings",initialize:function(e){var t=this;t.phyloTree=e.phyloTree,t.el=$("#SettingsMenu"),t.inputs={separation:$("#phyloVizTreeSeparation"),leafHeight:$("#phyloVizTreeLeafHeight"),fontSize:$("#phyloVizTreeFontSize")},$("#settingsCloseBtn").off().on("click",function(){t.el.hide()}),$("#phylovizResetSettingsBtn").off().on("click",function(){t.resetToDefaults()}),$("#phylovizApplySettingsBtn").off().on("click",function(){t.apply()})},apply:function(){var e=this;e.isAcceptableValue(e.inputs.separation,50,2500)&&e.isAcceptableValue(e.inputs.leafHeight,5,30)&&e.isAcceptableValue(e.inputs.fontSize,5,20)&&$.each(e.inputs,function(t,n){e.phyloTree.set(t,n.val())})},updateUI:function(){var e=this;$.each(e.inputs,function(t,n){n.val(e.phyloTree.get(t))})},resetToDefaults:function(){$(".tooltip").remove();var e=this;$.each(e.phyloTree.defaults,function(t,n){e.phyloTree.set(t,n)}),e.updateUI()},render:function(){}}),y=h.extend({className:"Settings",initialize:function(e){var t=this;t.el=$("#nodeSelectionView"),t.phyloTree=e.phyloTree,t.UI={enableEdit:$("#phylovizEditNodesCheck"),saveChanges:$("#phylovizNodeSaveChanges"),cancelChanges:$("#phylovizNodeCancelChanges"),name:$("#phyloVizSelectedNodeName"),dist:$("#phyloVizSelectedNodeDist"),annotation:$("#phyloVizSelectedNodeAnnotation")},t.valuesOfConcern={name:null,dist:null,annotation:null},$("#nodeSelCloseBtn").off().on("click",function(){t.el.hide()}),t.UI.saveChanges.off().on("click",function(){t.updateNodes()}),t.UI.cancelChanges.off().on("click",function(){t.cancelChanges()}),function(e){e.fn.enable=function(t){return e(this).each(function(){t?e(this).removeAttr("disabled"):e(this).attr("disabled","disabled")})}}(jQuery),t.UI.enableEdit.off().on("click",function(){t.toggleUI()})},toggleUI:function(){var e=this,t=e.UI.enableEdit.is(":checked");t||e.cancelChanges(),$.each(e.valuesOfConcern,function(n,i){e.UI[n].enable(t)}),t?(e.UI.saveChanges.show(),e.UI.cancelChanges.show()):(e.UI.saveChanges.hide(),e.UI.cancelChanges.hide())},cancelChanges:function(){var e=this,t=e.phyloTree.get("selectedNode");t&&$.each(e.valuesOfConcern,function(n,i){e.UI[n].val(t[n])})},updateNodes:function(){var e=this,t=e.phyloTree.get("selectedNode");if(t){if(!e.isAcceptableValue(e.UI.dist,0,1)||e.hasIllegalJsonCharacters(e.UI.name)||e.hasIllegalJsonCharacters(e.UI.annotation))return;$.each(e.valuesOfConcern,function(n,i){t[n]=e.UI[n].val()}),e.phyloTree.set("nodeAttrChangedTime",new Date)}else alert("No node selected")}}),m=h.extend({initialize:function(){var e=this;$("#phyloVizSearchBtn").on("click",function(){var t=$("#phyloVizSearchTerm"),n=$("#phyloVizSearchCondition").val().split("-"),i=n[0],o=n[1];e.hasIllegalJsonCharacters(t),"dist"===i&&e.isAcceptableValue(t,0,1),e.searchTree(i,o,t.val())})},searchTree:function(e,t,n){r.selectAll("g.node").classed("searchHighlight",function(i){var o=i[e];if(void 0!==o&&null!==o)if("dist"===e)switch(t){case"greaterEqual":return o>=+n;case"lesserEqual":return o<=+n;default:return}else if("name"===e||"annotation"===e)return-1!==o.toLowerCase().indexOf(n.toLowerCase())})}});e.default={PhylovizView:p}});
\ No newline at end of file
+define("viz/phyloviz",["exports","utils/localization","libs/d3","viz/visualization","mvc/dataset/data","mvc/ui/icon-button"],function(e,t,n,i,o,a){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}function r(){function e(t,n,i,o){var a=t.children,c=0,h=t.dist||s;return h=h>1?1:h,t.dist=h,t.y0=null!==o?o.y0+h*l:d,a?(a.forEach(function(o){o.parent=t,c+=e(o,n,i,t)}),t.x0=c/a.length):(t.x0=r*i,r+=1),t.x=t.x0,t.y=t.y0,t.x0}var t=this,n=c.layout.hierarchy().sort(null).value(null),i=360,o="Linear",a=18,l=200,r=0,s=.5,d=50;return t.leafHeight=function(e){return void 0===e?a:(a=e,t)},t.layoutMode=function(e){return void 0===e?o:(o=e,t)},t.layoutAngle=function(e){return void 0===e?i:isNaN(e)||e<0||e>360?t:(i=e,t)},t.separation=function(e){return void 0===e?l:(l=e,t)},t.links=function(e){return c.layout.tree().links(e)},t.nodes=function(l,s){"[object Array]"===toString.call(l)&&(l=l[0]);var c=n.call(t,l,s),d=[],h=0,u=0;return window._d=l,window._nodes=c,c.forEach(function(e){h=e.depth>h?e.depth:h,d.push(e)}),d.forEach(function(e){e.children||(u+=1,e.depth=h)}),a="Circular"===o?i/u:a,r=0,e(d[0],h,a,null),d},t}Object.defineProperty(e,"__esModule",{value:!0});var s=l(t),c=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}(n),d=l(i),h=l(o),u=l(a),f=Backbone.View.extend({className:"UserMenuBase",isAcceptableValue:function(e,t,n){var i=e.val(),o=e.attr("displayLabel")||e.attr("id").replace("phyloViz","");return function(e){return!isNaN(parseFloat(e))&&isFinite(e)}(i)?i>n?(alert(o+" is too large."),!1):!(i<t)||(alert(o+" is too small."),!1):(alert(o+" is not a number!"),!1)},hasIllegalJsonCharacters:function(e){return-1!==e.val().search(/"|'|\\/)&&(alert("Named fields cannot contain these illegal characters: double quote(\"), single guote('), or back slash(\\). "),!0)}}),p=d.default.Visualization.extend({defaults:{layout:"Linear",separation:250,leafHeight:18,type:"phyloviz",title:(0,s.default)("Title"),scaleFactor:1,translate:[0,0],fontSize:12,selectedNode:null,nodeAttrChangedTime:0},initialize:function(e){this.set("dataset",new h.default.Dataset({id:e.dataset_id}))},root:{},toggle:function(e){void 0!==e&&(e.children?(e._children=e.children,e.children=null):(e.children=e._children,e._children=null))},toggleAll:function(e){e.children&&0!==e.children.length&&(e.children.forEach(this.toggleAll),toggle(e))},getData:function(){return this.root},save:function(){function e(t){delete t.parent,t._selected&&delete t._selected,t.children&&t.children.forEach(e),t._children&&t._children.forEach(e)}e(this.root);var t=jQuery.extend(!0,{},this.attributes);return t.selectedNode=null,show_message("Saving to Galaxy","progress"),$.ajax({url:this.url(),type:"POST",dataType:"json",data:{config:JSON.stringify(t),type:"phyloviz"},success:function(e){hide_modal()}})}}),g=Backbone.View.extend({defaults:{nodeRadius:4.5},stdInit:function(e){var t=this;t.model.on("change:separation change:leafHeight change:fontSize change:nodeAttrChangedTime",t.updateAndRender,t),t.vis=e.vis,t.i=0,t.maxDepth=-1,t.width=e.width,t.height=e.height},updateAndRender:function(e){c.select(".vis");var t=this;e=e||t.model.root,t.renderNodes(e),t.renderLinks(e),t.addTooltips()},renderLinks:function(e){var t=this,n=(t.diagonal,t.duration,t.layoutMode,t.vis.selectAll("g.completeLink").data(t.tree.links(t.nodes),function(e){return e.target.id})),i=function(e){e.pos0=e.source.y0+" "+e.source.x0,e.pos1=e.source.y0+" "+e.target.x0,e.pos2=e.target.y0+" "+e.target.x0};n.enter().insert("svg:g","g.node").attr("class","completeLink").append("svg:path").attr("class","link").attr("d",function(e){return i(e),"M "+e.pos0+" L "+e.pos1}),n.transition().duration(500).select("path.link").attr("d",function(e){return i(e),"M "+e.pos0+" L "+e.pos1+" L "+e.pos2});n.exit().remove()},selectNode:function(e){var t=this;c.selectAll("g.node").classed("selectedHighlight",function(t){return e.id===t.id&&(e._selected?(delete e._selected,!1):(e._selected=!0,!0))}),t.model.set("selectedNode",e),$("#phyloVizSelectedNodeName").val(e.name),$("#phyloVizSelectedNodeDist").val(e.dist),$("#phyloVizSelectedNodeAnnotation").val(e.annotation||"")},addTooltips:function(){$(".tooltip").remove(),$(".node").attr("data-original-title",function(){var e=this.__data__,t=e.annotation||"None";return e?(e.name?e.name+"<br/>":"")+"Dist: "+e.dist+" <br/>Annotation1: "+t+(e.bootstrap?"<br/>Confidence level: "+Math.round(100*e.bootstrap):""):""}).tooltip({placement:"top",trigger:"hover"})}}).extend({initialize:function(e){var t=this;t.margins=e.margins,t.layoutMode="Linear",t.stdInit(e),t.layout(),t.updateAndRender(t.model.root)},layout:function(){var e=this;e.tree=(new r).layoutMode("Linear"),e.diagonal=c.svg.diagonal().projection(function(e){return[e.y,e.x]})},renderNodes:function(e){var t=this,n=t.model.get("fontSize")+"px";t.tree.separation(t.model.get("separation")).leafHeight(t.model.get("leafHeight"));var i=t.tree.separation(t.model.get("separation")).nodes(t.model.root),o=t.vis.selectAll("g.node").data(i,function(e){return e.name+e.id||(e.id=++t.i)});t.nodes=i,t.duration=500;var a=o.enter().append("svg:g").attr("class","node").on("dblclick",function(){c.event.stopPropagation()}).on("click",function(e){if(c.event.altKey)t.selectNode(e);else{if(e.children&&0===e.children.length)return;t.model.toggle(e),t.updateAndRender(e)}});"[object Array]"===toString.call(e)&&(e=e[0]),a.attr("transform",function(t){return"translate("+e.y0+","+e.x0+")"}),a.append("svg:circle").attr("r",1e-6).style("fill",function(e){return e._children?"lightsteelblue":"#fff"}),a.append("svg:text").attr("class","nodeLabel").attr("x",function(e){return e.children||e._children?-10:10}).attr("dy",".35em").attr("text-anchor",function(e){return e.children||e._children?"end":"start"}).style("fill-opacity",1e-6);var l=o.transition().duration(500);l.attr("transform",function(e){return"translate("+e.y+","+e.x+")"}),l.select("circle").attr("r",t.defaults.nodeRadius).style("fill",function(e){return e._children?"lightsteelblue":"#fff"}),l.select("text").style("fill-opacity",1).style("font-size",n).text(function(e){return e.name&&""!==e.name?e.name:e.bootstrap?Math.round(100*e.bootstrap):""});var r=o.exit().transition().duration(500).remove();r.select("circle").attr("r",1e-6),r.select("text").style("fill-opacity",1e-6),i.forEach(function(e){e.x0=e.x,e.y0=e.y})}}),v=Backbone.View.extend({className:"phyloviz",initialize:function(e){var t=this;t.MIN_SCALE=.05,t.MAX_SCALE=5,t.MAX_DISPLACEMENT=500,t.margins=[10,60,10,80],t.width=$("#PhyloViz").width(),t.height=$("#PhyloViz").height(),t.radius=t.width,t.data=e.data,$(window).resize(function(){t.width=$("#PhyloViz").width(),t.height=$("#PhyloViz").height(),t.render()}),t.phyloTree=new p(e.config),t.phyloTree.root=t.data,t.zoomFunc=c.behavior.zoom().scaleExtent([t.MIN_SCALE,t.MAX_SCALE]),t.zoomFunc.translate(t.phyloTree.get("translate")),t.zoomFunc.scale(t.phyloTree.get("scaleFactor")),t.navMenu=new y(t),t.settingsMenu=new m({phyloTree:t.phyloTree}),t.nodeSelectionView=new z({phyloTree:t.phyloTree}),t.search=new _,setTimeout(function(){t.zoomAndPan()},1e3)},render:function(){var e=this;$("#PhyloViz").empty(),e.mainSVG=c.select("#PhyloViz").append("svg:svg").attr("width",e.width).attr("height",e.height).attr("pointer-events","all").call(e.zoomFunc.on("zoom",function(){e.zoomAndPan()})),e.boundingRect=e.mainSVG.append("svg:rect").attr("class","boundingRect").attr("width",e.width).attr("height",e.height).attr("stroke","black").attr("fill","white"),e.vis=e.mainSVG.append("svg:g").attr("class","vis"),e.layoutOptions={model:e.phyloTree,width:e.width,height:e.height,vis:e.vis,margins:e.margins},$("#title").text("Phylogenetic Tree from "+e.phyloTree.get("title")+":");new g(e.layoutOptions)},zoomAndPan:function(e){var t,n;void 0!==e&&(t=e.zoom,n=e.translate);var i=this,o=i.zoomFunc.scale(),a=i.zoomFunc.translate(),l="",r="";switch(t){case"reset":o=1,a=[0,0];break;case"+":o*=1.1;break;case"-":o*=.9;break;default:"number"==typeof t?o=t:null!==c.event&&(o=c.event.scale)}if(!(o<i.MIN_SCALE||o>i.MAX_SCALE)){if(i.zoomFunc.scale(o),l="translate("+i.margins[3]+","+i.margins[0]+") scale("+o+")",null!==c.event)r="translate("+c.event.translate+")";else{if(void 0!==n){var s=n.split(",")[0],d=n.split(",")[1];isNaN(s)||isNaN(d)||(a=[a[0]+parseFloat(s),a[1]+parseFloat(d)])}i.zoomFunc.translate(a),r="translate("+a+")"}i.phyloTree.set("scaleFactor",o),i.phyloTree.set("translate",a),i.vis.attr("transform",r+l)}},reloadViz:function(){var e=this,t=$("#phylovizNexSelector :selected").val();$.getJSON(e.phyloTree.get("dataset").url(),{tree_index:t,data_type:"raw_data"},function(t){e.data=t.data,e.config=t,e.render()})}}),y=Backbone.View.extend({initialize:function(e){var t=this;t.phylovizView=e,$("#panelHeaderRightBtns").empty(),$("#phyloVizNavBtns").empty(),$("#phylovizNexSelector").off(),t.initNavBtns(),t.initRightHeaderBtns(),$("#phylovizNexSelector").off().on("change",function(){t.phylovizView.reloadViz()})},initRightHeaderBtns:function(){var e=this,t=u.default.create_icon_buttons_menu([{icon_class:"gear",title:(0,s.default)("PhyloViz Settings"),on_click:function(){$("#SettingsMenu").show(),e.settingsMenu.updateUI()}},{icon_class:"disk",title:(0,s.default)("Save visualization"),on_click:function(){var t=$("#phylovizNexSelector option:selected").text();t&&e.phylovizView.phyloTree.set("title",t),e.phylovizView.phyloTree.save()}},{icon_class:"chevron-expand",title:"Search / Edit Nodes",on_click:function(){$("#nodeSelectionView").show()}},{icon_class:"information",title:(0,s.default)("Phyloviz Help"),on_click:function(){window.open("https://galaxyproject.org/learn/visualization/phylogenetic-tree/")}}],{tooltip_config:{placement:"bottom"}});$("#panelHeaderRightBtns").append(t.$el)},initNavBtns:function(){var e=this,t=u.default.create_icon_buttons_menu([{icon_class:"zoom-in",title:(0,s.default)("Zoom in"),on_click:function(){e.phylovizView.zoomAndPan({zoom:"+"})}},{icon_class:"zoom-out",title:(0,s.default)("Zoom out"),on_click:function(){e.phylovizView.zoomAndPan({zoom:"-"})}},{icon_class:"arrow-circle",title:"Reset Zoom/Pan",on_click:function(){e.phylovizView.zoomAndPan({zoom:"reset"})}}],{tooltip_config:{placement:"bottom"}});$("#phyloVizNavBtns").append(t.$el)}}),m=f.extend({className:"Settings",initialize:function(e){var t=this;t.phyloTree=e.phyloTree,t.el=$("#SettingsMenu"),t.inputs={separation:$("#phyloVizTreeSeparation"),leafHeight:$("#phyloVizTreeLeafHeight"),fontSize:$("#phyloVizTreeFontSize")},$("#settingsCloseBtn").off().on("click",function(){t.el.hide()}),$("#phylovizResetSettingsBtn").off().on("click",function(){t.resetToDefaults()}),$("#phylovizApplySettingsBtn").off().on("click",function(){t.apply()})},apply:function(){var e=this;e.isAcceptableValue(e.inputs.separation,50,2500)&&e.isAcceptableValue(e.inputs.leafHeight,5,30)&&e.isAcceptableValue(e.inputs.fontSize,5,20)&&$.each(e.inputs,function(t,n){e.phyloTree.set(t,n.val())})},updateUI:function(){var e=this;$.each(e.inputs,function(t,n){n.val(e.phyloTree.get(t))})},resetToDefaults:function(){$(".tooltip").remove();var e=this;$.each(e.phyloTree.defaults,function(t,n){e.phyloTree.set(t,n)}),e.updateUI()},render:function(){}}),z=f.extend({className:"Settings",initialize:function(e){var t=this;t.el=$("#nodeSelectionView"),t.phyloTree=e.phyloTree,t.UI={enableEdit:$("#phylovizEditNodesCheck"),saveChanges:$("#phylovizNodeSaveChanges"),cancelChanges:$("#phylovizNodeCancelChanges"),name:$("#phyloVizSelectedNodeName"),dist:$("#phyloVizSelectedNodeDist"),annotation:$("#phyloVizSelectedNodeAnnotation")},t.valuesOfConcern={name:null,dist:null,annotation:null},$("#nodeSelCloseBtn").off().on("click",function(){t.el.hide()}),t.UI.saveChanges.off().on("click",function(){t.updateNodes()}),t.UI.cancelChanges.off().on("click",function(){t.cancelChanges()}),function(e){e.fn.enable=function(t){return e(this).each(function(){t?e(this).removeAttr("disabled"):e(this).attr("disabled","disabled")})}}(jQuery),t.UI.enableEdit.off().on("click",function(){t.toggleUI()})},toggleUI:function(){var e=this,t=e.UI.enableEdit.is(":checked");t||e.cancelChanges(),$.each(e.valuesOfConcern,function(n,i){e.UI[n].enable(t)}),t?(e.UI.saveChanges.show(),e.UI.cancelChanges.show()):(e.UI.saveChanges.hide(),e.UI.cancelChanges.hide())},cancelChanges:function(){var e=this,t=e.phyloTree.get("selectedNode");t&&$.each(e.valuesOfConcern,function(n,i){e.UI[n].val(t[n])})},updateNodes:function(){var e=this,t=e.phyloTree.get("selectedNode");if(t){if(!e.isAcceptableValue(e.UI.dist,0,1)||e.hasIllegalJsonCharacters(e.UI.name)||e.hasIllegalJsonCharacters(e.UI.annotation))return;$.each(e.valuesOfConcern,function(n,i){t[n]=e.UI[n].val()}),e.phyloTree.set("nodeAttrChangedTime",new Date)}else alert("No node selected")}}),_=f.extend({initialize:function(){var e=this;$("#phyloVizSearchBtn").on("click",function(){var t=$("#phyloVizSearchTerm"),n=$("#phyloVizSearchCondition").val().split("-"),i=n[0],o=n[1];e.hasIllegalJsonCharacters(t),"dist"===i&&e.isAcceptableValue(t,0,1),e.searchTree(i,o,t.val())})},searchTree:function(e,t,n){c.selectAll("g.node").classed("searchHighlight",function(i){var o=i[e];if(void 0!==o&&null!==o)if("dist"===e)switch(t){case"greaterEqual":return o>=+n;case"lesserEqual":return o<=+n;default:return}else if("name"===e||"annotation"===e)return-1!==o.toLowerCase().indexOf(n.toLowerCase())})}});e.default={PhylovizView:v}});
\ No newline at end of file
diff --git a/static/scripts/viz/sweepster.js b/static/scripts/viz/sweepster.js
index 1d42e02bc33..9c83d374994 100644
--- a/static/scripts/viz/sweepster.js
+++ b/static/scripts/viz/sweepster.js
@@ -1 +1 @@
-define("viz/sweepster",["exports","libs/underscore","libs/d3","viz/trackster/util","viz/visualization","viz/trackster/tracks","mvc/tool/tools","mvc/dataset/data","utils/config","mvc/ui/icon-button"],function(e,t,n,a,i,o,r,l,s,c){"use strict";function d(e){return e&&e.__esModule?e:{default:e}}function u(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}Object.defineProperty(e,"__esModule",{value:!0});var _=u(t),h=u(n),m=(d(a),d(i)),g=d(o),p=d(r),f=d(l),v=d(s),k=d(c),w=Backbone.Model.extend({defaults:{inputs:null,values:null}}),b=Backbone.Model.extend({defaults:{tool:null,tree_data:null},initialize:function(e){var t=this;this.get("tool").get("inputs").each(function(e){e.on("change:min change:max change:num_samples",function(e){e.get("in_ptree")&&t.set_tree_data()},t),e.on("change:in_ptree",function(e){e.get("in_ptree")?t.add_param(e):t.remove_param(e),t.set_tree_data()},t)}),e.config&&_.each(e.config,function(e){var n=t.get("tool").get("inputs").find(function(t){return t.get("name")===e.name});t.add_param(n),n.set(e)})},add_param:function(e){e.get("ptree_index")||(e.set("in_ptree",!0),e.set("ptree_index",this.get_tree_params().length))},remove_param:function(e){e.set("in_ptree",!1),e.set("ptree_index",null),_(this.get_tree_params()).each(function(e,t){e.set("ptree_index",t+1)})},set_tree_data:function(){var e=_.map(this.get_tree_params(),function(e){return{param:e,samples:e.get_samples()}}),t=0;this.set("tree_data",{name:"Root",id:t++,children:0!==e.length?function e(n,a){var i=n[a],o=i.param,r=(o.get("label"),i.samples);return n.length-1===a?_.map(r,function(e){return{id:t++,name:e,param:o,value:e}}):_.map(r,function(i){return{id:t++,name:i,param:o,value:i,children:e(n,a+1)}})}(e,0):null})},get_tree_params:function(){return _(this.get("tool").get("inputs").where({in_ptree:!0})).sortBy(function(e){return e.get("ptree_index")})},get_num_leaves:function(){return this.get_tree_params().reduce(function(e,t){return e*t.get_samples().length},1)},get_node_settings:function(e){var t=this.get("tool").get_inputs_dict(),n=e.parent;if(n)for(;0!==n.depth;)t[n.param.get("name")]=n.value,n=n.parent;var a=this,i=function e(t,n){return t.param&&(n[t.param.get("name")]=t.value),t.children?_.flatten(_.map(t.children,function(t){return e(t,_.clone(n))})):new w({inputs:a.get("tool").get("inputs"),values:n})}(e,t);return _.isArray(i)||(i=[i]),i},get_connected_nodes:function(e){for(var t=[],n=e.parent;n;)t.push(n),n=n.parent;return _.flatten([t,function e(t){return t.children?_.flatten([t,_.map(t.children,function(t){return e(t)})]):t}(e)])},get_leaf:function(e){for(var t=this.get("tree_data");t.children;)t=function(t){return _.find(t,function(t){return e[t.param.get("name")]===t.value})}(t.children);return t},toJSON:function(){return this.get_tree_params().map(function(e){return{name:e.get("name"),min:e.get("min"),max:e.get("max"),num_samples:e.get("num_samples")}})}}),y=Backbone.Model.extend({defaults:{track:null,mode:"Pack",settings:null,regions:null},initialize:function(e){if(this.set("regions",e.regions),e.track){var t=_.extend({data_url:Galaxy.root+"dummy1",converted_datasets_state_url:Galaxy.root+"dummy2"},e.track);this.set("track",g.default.object_from_template(t,{},null))}},same_settings:function(e){var t=this.get("settings"),n=e.get("settings");for(var a in t)if(!n[a]||t[a]!==n[a])return!1;return!0},toJSON:function(){return{track:this.get("track").to_dict(),settings:this.get("settings"),regions:this.get("regions")}}}),x=Backbone.Collection.extend({model:y}),C=m.default.Visualization.extend({defaults:_.extend({},m.default.Visualization.prototype.defaults,{dataset:null,tool:null,parameter_tree:null,regions:null,tracks:null,default_mode:"Pack"}),initialize:function(e){this.set("dataset",new f.default.Dataset(e.dataset)),this.set("tool",new p.default.Tool(e.tool)),this.set("regions",new m.default.GenomeRegionCollection(e.regions)),this.set("tracks",new x(e.tracks));var t=this.get("tool");this.set("tool_with_samplable_inputs",t),t.remove_inputs(["data","hidden_data","conditional","text"]),this.set("parameter_tree",new b({tool:t,config:e.tree_config}))},add_track:function(e){this.get("tracks").add(e)},toJSON:function(){return{id:this.get("id"),title:"Parameter exploration for dataset '"+this.get("dataset").get("name")+"'",type:"sweepster",dataset_id:this.get("dataset").id,tool_id:this.get("tool").id,regions:this.get("regions").toJSON(),tree_config:this.get("parameter_tree").toJSON(),tracks:this.get("tracks").toJSON()}}}),z=Backbone.View.extend({tagName:"tr",TILE_LEN:250,initialize:function(e){this.canvas_manager=e.canvas_manager,this.render(),this.model.on("change:track change:mode",this.draw_tiles,this)},render:function(){var e=this.model.get("settings"),t=e.get("values"),n=$("<td/>").addClass("settings").appendTo(this.$el),a=$("<div/>").addClass("track-info").hide().appendTo(n);a.append($("<div/>").css("font-weight","bold").text("Track Settings")),e.get("inputs").each(function(e){a.append(e.get("label")+": "+t[e.get("name")]+"<br/>")});var i=this,o=($("<button/>").appendTo(a).text("Run on complete dataset").click(function(){a.toggle(),i.trigger("run_on_dataset",e)}),k.default.create_icon_buttons_menu([{title:"Settings",icon_class:"gear track-settings",on_click:function(){a.toggle()}},{title:"Remove",icon_class:"cross-circle",on_click:function(){i.$el.remove(),$(".tooltip").remove()}}]));n.prepend(o.$el),this.model.get("regions").each(function(){i.$el.append($("<td/>").addClass("tile").html($("<img/>").attr("src",Galaxy.root+"images/loading_large_white_bg.gif")))}),this.model.get("track")&&this.draw_tiles()},draw_tiles:function(){var e=this,t=this.model.get("track"),n=this.model.get("regions"),a=this.$el.find("td.tile");t&&$.when(t.data_manager.data_is_ready()).then(function(i){n.each(function(n,i){var o=n.length()/e.TILE_LEN,r=1/o,l=e.model.get("mode");$.when(t.data_manager.get_data(n,l,o,{})).then(function(o){var s=e.canvas_manager.new_canvas();s.width=e.TILE_LEN,s.height=t.get_canvas_height(o,l,r,s.width),t.draw_tile(o,s.getContext("2d"),l,n,r),$(a[i]).empty().append(s)})})})}}),S=Backbone.View.extend({number_input_template:'<div class="form-row-input sweep"><input class="min" type="text" size="6" value="<%= min %>"> - <input class="max" type="text" size="6" value="<%= max %>"> samples: <input class="num_samples" type="text" size="1" value="<%= num_samples %>"></div>',select_input_template:'<div class="form-row-input sweep"><%= options %></div>',initialize:function(e){this.$el=e.tool_row,this.render()},render:function(){var e=this.model,t=(e.get("type"),this.$el.find(".form-row-input")),n=null;if(t.find(":input").change(function(){e.set("value",$(this).val())}),e instanceof p.default.IntegerToolParameter)n=$(_.template(this.number_input_template)(this.model.toJSON()));else if(e instanceof p.default.SelectToolParameter){var a=_.map(this.$el.find("select option"),function(e){return $(e).val()}).join(", ");n=$(_.template(this.select_input_template)({options:a}))}n.insertAfter(t);var i=this,o=k.default.create_icon_buttons_menu([{title:"Add parameter to tree",icon_class:"plus-button",on_click:function(){e.set("in_ptree",!0),t.hide(),n.show(),$(this).hide(),i.$el.find(".icon-button.toggle").show()}},{title:"Remove parameter from tree",icon_class:"toggle",on_click:function(){e.set("in_ptree",!1),n.hide(),t.show(),$(this).hide(),i.$el.find(".icon-button.plus-button").show()}}],{});this.$el.prepend(o.$el),e.get("in_ptree")?(t.hide(),i.$el.find(".icon-button.plus-button").hide()):(i.$el.find(".icon-button.toggle").hide(),n.hide()),_.each(["min","max","num_samples"],function(t){n.find("."+t).change(function(){e.set(t,parseFloat($(this).val()))})})}}),A=Backbone.View.extend({className:"tree-design",initialize:function(e){this.render()},render:function(){var e=new p.default.ToolFormView({model:this.model.get("tool")});e.render(),this.$el.append(e.$el);var t=this.model.get("tool").get("inputs");this.$el.find(".form-row").not(".form-actions").each(function(e){new S({model:t.at(e),tool_row:$(this)})})}}),N=Backbone.View.extend({className:"tool-parameter-tree",initialize:function(e){this.model.on("change:tree_data",this.render,this)},render:function(){this.$el.children().remove();var e=this.model.get_tree_params();if(e.length){this.width=100*(2+e.length),this.height=15*this.model.get_num_leaves();var t=this,n=h.layout.cluster().size([this.height,this.width-160]),a=h.svg.diagonal().projection(function(e){return[e.y,e.x]}),i=n.nodes(this.model.get("tree_data")),o=_.uniq(_.pluck(i,"y"));_.each(e,function(e,n){var a=o[n+1],i=$("#center").position().left;t.$el.append($("<div>").addClass("label").text(e.get("label")).css("left",a+i))});var r=h.select(this.$el[0]).append("svg").attr("width",this.width).attr("height",this.height+30).append("g").attr("transform","translate(40, 20)"),l=(r.selectAll("path.link").data(n.links(i)).enter().append("path").attr("class","link").attr("d",a),r.selectAll("g.node").data(i).enter().append("g").attr("class","node").attr("transform",function(e){return"translate("+e.y+","+e.x+")"}).on("mouseover",function(e){var n=_.pluck(t.model.get_connected_nodes(e),"id");l.filter(function(e){return void 0!==_.find(n,function(t){return t===e.id})}).style("fill","#f00")}).on("mouseout",function(){l.style("fill","#000")}));l.append("circle").attr("r",9),l.append("text").attr("dx",function(e){return e.children?-12:12}).attr("dy",3).attr("text-anchor",function(e){return e.children?"end":"start"}).text(function(e){return e.name})}}}),T=Backbone.View.extend({className:"Sweepster",helpText:"<div><h4>Getting Started</h4><ol><li>Create a parameter tree by using the icons next to the tool's parameter names to add or remove parameters.<li>Adjust the tree by using parameter inputs to select min, max, and number of samples<li>Run the tool with different settings by clicking on tree nodes</ol></div>",initialize:function(e){this.canvas_manager=new m.default.CanvasManager(this.$el.parents("body")),this.tool_param_tree_view=new N({model:this.model.get("parameter_tree")}),this.track_collection_container=$("<table/>").addClass("tracks"),this.model.get("parameter_tree").on("change:tree_data",this.handle_node_clicks,this);var t=this;this.model.get("tracks").each(function(e){e.get("track").view=t}),this.config=v.default.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"},{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"}],{})},render:function(){var e=new A({model:this.model.get("parameter_tree")});$("#left").append(e.$el);var t=this,n=t.model.get("regions"),a=$("<tr/>").appendTo(this.track_collection_container);n.each(function(e){a.append($("<th>").text(e.toString()))}),a.children().first().attr("colspan",2);var i=$("<div>").addClass("tiles");$("#right").append(i.append(this.track_collection_container)),t.model.get("tracks").each(function(e){t.add_track(e)});var o=$(this.helpText).addClass("help"),r=k.default.create_icon_buttons_menu([{title:"Close",icon_class:"cross-circle",on_click:function(){$(".tooltip").remove(),o.remove()}}]);o.prepend(r.$el.css("float","right")),$("#center").append(o),this.tool_param_tree_view.render(),$("#center").append(this.tool_param_tree_view.$el),this.handle_node_clicks();var l=k.default.create_icon_buttons_menu([{icon_class:"chevron-expand",title:"Set display mode"},{icon_class:"cross-circle",title:"Close",on_click:function(){window.location="${h.url_for( controller='visualization', action='list' )}"}}],{tooltip_config:{placement:"bottom"}}),s=["Squish","Pack"],c={};_.each(s,function(e){c[e]=function(){t.model.set("default_mode",e),t.model.get("tracks").each(function(t){t.set("mode",e)})}}),make_popupmenu(l.$el.find(".chevron-expand"),c),l.$el.attr("style","float: right"),$("#right .unified-panel-header-inner").append(l.$el)},get_base_color:function(e){return this.config.get_value(e.toLowerCase()+"_color")||this.config.get_value("n_color")},run_tool_on_dataset:function(e){var t=this.model.get("tool"),n=t.get("name"),a=this.model.get("dataset");t.set_input_values(e.get("values")),$.when(t.rerun(a)).then(function(e){}),show_modal("Running "+n+" on complete dataset",n+" is running on dataset '"+a.get("name")+"'. Outputs are in the dataset's history.",{Ok:function(){hide_modal()}})},add_track:function(e){var t=this,n=this.model.get("parameter_tree");t.model.add_track(e);var a=new z({model:e,canvas_manager:t.canvas_manager});return a.on("run_on_dataset",t.run_tool_on_dataset,t),t.track_collection_container.append(a.$el),a.$el.hover(function(){var a=n.get_leaf(e.get("settings").get("values")),i=_.pluck(n.get_connected_nodes(a),"id");h.select(t.tool_param_tree_view.$el[0]).selectAll("g.node").filter(function(e){return void 0!==_.find(i,function(t){return t===e.id})}).style("fill","#f00")},function(){h.select(t.tool_param_tree_view.$el[0]).selectAll("g.node").style("fill","#000")}),e},handle_node_clicks:function(){var e=this,t=this.model.get("parameter_tree"),n=this.model.get("regions");h.select(this.tool_param_tree_view.$el[0]).selectAll("g.node").on("click",function(a,i){var o=e.model.get("tool"),r=e.model.get("dataset"),l=t.get_node_settings(a),s=$.Deferred();l.length>=10?show_modal("Whoa there cowboy!","You clicked on a node to try "+e.model.get("tool").get("name")+" with "+l.length+" different combinations of settings. You can only run 10 jobs at a time.",{Ok:function(){hide_modal(),s.resolve(!1)}}):s.resolve(!0),$.when(s).then(function(t){if(t){var a=_.map(l,function(t){var a=new y({settings:t,regions:n,mode:e.model.get("default_mode")});return e.add_track(a),a});_.each(a,function(t,a){setTimeout(function(){o.set_input_values(t.get("settings").get("values")),$.when(o.rerun(r,n)).then(function(n){var a=n.first(),i=a.get("track_config");i.dataset=a,i.tool=null,i.prefs=e.config.to_key_value_dict();var o=g.default.object_from_template(i,e,null);o.init_for_tool_data(),t.set("track",o)})},1e4*a)})}})})}});e.default={SweepsterVisualization:C,SweepsterVisualizationView:T}});
\ No newline at end of file
+define("viz/sweepster",["exports","utils/localization","libs/underscore","libs/d3","viz/trackster/util","viz/visualization","viz/trackster/tracks","mvc/tool/tools","mvc/dataset/data","utils/config","mvc/ui/icon-button"],function(e,t,n,a,i,o,r,l,s,c,d){"use strict";function u(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}function _(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var h=_(t),m=u(n),g=u(a),p=(_(i),_(o)),f=_(r),v=_(l),k=_(s),w=_(c),b=_(d),y=Backbone.Model.extend({defaults:{inputs:null,values:null}}),x=Backbone.Model.extend({defaults:{tool:null,tree_data:null},initialize:function(e){var t=this;this.get("tool").get("inputs").each(function(e){e.on("change:min change:max change:num_samples",function(e){e.get("in_ptree")&&t.set_tree_data()},t),e.on("change:in_ptree",function(e){e.get("in_ptree")?t.add_param(e):t.remove_param(e),t.set_tree_data()},t)}),e.config&&m.each(e.config,function(e){var n=t.get("tool").get("inputs").find(function(t){return t.get("name")===e.name});t.add_param(n),n.set(e)})},add_param:function(e){e.get("ptree_index")||(e.set("in_ptree",!0),e.set("ptree_index",this.get_tree_params().length))},remove_param:function(e){e.set("in_ptree",!1),e.set("ptree_index",null),m(this.get_tree_params()).each(function(e,t){e.set("ptree_index",t+1)})},set_tree_data:function(){var e=m.map(this.get_tree_params(),function(e){return{param:e,samples:e.get_samples()}}),t=0;this.set("tree_data",{name:"Root",id:t++,children:0!==e.length?function e(n,a){var i=n[a],o=i.param,r=(o.get("label"),i.samples);return n.length-1===a?m.map(r,function(e){return{id:t++,name:e,param:o,value:e}}):m.map(r,function(i){return{id:t++,name:i,param:o,value:i,children:e(n,a+1)}})}(e,0):null})},get_tree_params:function(){return m(this.get("tool").get("inputs").where({in_ptree:!0})).sortBy(function(e){return e.get("ptree_index")})},get_num_leaves:function(){return this.get_tree_params().reduce(function(e,t){return e*t.get_samples().length},1)},get_node_settings:function(e){var t=this.get("tool").get_inputs_dict(),n=e.parent;if(n)for(;0!==n.depth;)t[n.param.get("name")]=n.value,n=n.parent;var a=this,i=function e(t,n){return t.param&&(n[t.param.get("name")]=t.value),t.children?m.flatten(m.map(t.children,function(t){return e(t,m.clone(n))})):new y({inputs:a.get("tool").get("inputs"),values:n})}(e,t);return m.isArray(i)||(i=[i]),i},get_connected_nodes:function(e){for(var t=[],n=e.parent;n;)t.push(n),n=n.parent;return m.flatten([t,function e(t){return t.children?m.flatten([t,m.map(t.children,function(t){return e(t)})]):t}(e)])},get_leaf:function(e){for(var t=this.get("tree_data");t.children;)t=function(t){return m.find(t,function(t){return e[t.param.get("name")]===t.value})}(t.children);return t},toJSON:function(){return this.get_tree_params().map(function(e){return{name:e.get("name"),min:e.get("min"),max:e.get("max"),num_samples:e.get("num_samples")}})}}),z=Backbone.Model.extend({defaults:{track:null,mode:"Pack",settings:null,regions:null},initialize:function(e){if(this.set("regions",e.regions),e.track){var t=m.extend({data_url:Galaxy.root+"dummy1",converted_datasets_state_url:Galaxy.root+"dummy2"},e.track);this.set("track",f.default.object_from_template(t,{},null))}},same_settings:function(e){var t=this.get("settings"),n=e.get("settings");for(var a in t)if(!n[a]||t[a]!==n[a])return!1;return!0},toJSON:function(){return{track:this.get("track").to_dict(),settings:this.get("settings"),regions:this.get("regions")}}}),C=Backbone.Collection.extend({model:z}),S=p.default.Visualization.extend({defaults:m.extend({},p.default.Visualization.prototype.defaults,{dataset:null,tool:null,parameter_tree:null,regions:null,tracks:null,default_mode:"Pack"}),initialize:function(e){this.set("dataset",new k.default.Dataset(e.dataset)),this.set("tool",new v.default.Tool(e.tool)),this.set("regions",new p.default.GenomeRegionCollection(e.regions)),this.set("tracks",new C(e.tracks));var t=this.get("tool");this.set("tool_with_samplable_inputs",t),t.remove_inputs(["data","hidden_data","conditional","text"]),this.set("parameter_tree",new x({tool:t,config:e.tree_config}))},add_track:function(e){this.get("tracks").add(e)},toJSON:function(){return{id:this.get("id"),title:"Parameter exploration for dataset '"+this.get("dataset").get("name")+"'",type:"sweepster",dataset_id:this.get("dataset").id,tool_id:this.get("tool").id,regions:this.get("regions").toJSON(),tree_config:this.get("parameter_tree").toJSON(),tracks:this.get("tracks").toJSON()}}}),A=Backbone.View.extend({tagName:"tr",TILE_LEN:250,initialize:function(e){this.canvas_manager=e.canvas_manager,this.render(),this.model.on("change:track change:mode",this.draw_tiles,this)},render:function(){var e=this.model.get("settings"),t=e.get("values"),n=$("<td/>").addClass("settings").appendTo(this.$el),a=$("<div/>").addClass("track-info").hide().appendTo(n);a.append($("<div/>").css("font-weight","bold").text("Track Settings")),e.get("inputs").each(function(e){a.append(e.get("label")+": "+t[e.get("name")]+"<br/>")});var i=this,o=($("<button/>").appendTo(a).text("Run on complete dataset").click(function(){a.toggle(),i.trigger("run_on_dataset",e)}),b.default.create_icon_buttons_menu([{title:(0,h.default)("Settings"),icon_class:"gear track-settings",on_click:function(){a.toggle()}},{title:(0,h.default)("Remove"),icon_class:"cross-circle",on_click:function(){i.$el.remove(),$(".tooltip").remove()}}]));n.prepend(o.$el),this.model.get("regions").each(function(){i.$el.append($("<td/>").addClass("tile").html($("<img/>").attr("src",Galaxy.root+"images/loading_large_white_bg.gif")))}),this.model.get("track")&&this.draw_tiles()},draw_tiles:function(){var e=this,t=this.model.get("track"),n=this.model.get("regions"),a=this.$el.find("td.tile");t&&$.when(t.data_manager.data_is_ready()).then(function(i){n.each(function(n,i){var o=n.length()/e.TILE_LEN,r=1/o,l=e.model.get("mode");$.when(t.data_manager.get_data(n,l,o,{})).then(function(o){var s=e.canvas_manager.new_canvas();s.width=e.TILE_LEN,s.height=t.get_canvas_height(o,l,r,s.width),t.draw_tile(o,s.getContext("2d"),l,n,r),$(a[i]).empty().append(s)})})})}}),N=Backbone.View.extend({number_input_template:'<div class="form-row-input sweep"><input class="min" type="text" size="6" value="<%= min %>"> - <input class="max" type="text" size="6" value="<%= max %>"> samples: <input class="num_samples" type="text" size="1" value="<%= num_samples %>"></div>',select_input_template:'<div class="form-row-input sweep"><%= options %></div>',initialize:function(e){this.$el=e.tool_row,this.render()},render:function(){var e=this.model,t=(e.get("type"),this.$el.find(".form-row-input")),n=null;if(t.find(":input").change(function(){e.set("value",$(this).val())}),e instanceof v.default.IntegerToolParameter)n=$(m.template(this.number_input_template)(this.model.toJSON()));else if(e instanceof v.default.SelectToolParameter){var a=m.map(this.$el.find("select option"),function(e){return $(e).val()}).join(", ");n=$(m.template(this.select_input_template)({options:a}))}n.insertAfter(t);var i=this,o=b.default.create_icon_buttons_menu([{title:(0,h.default)("Add parameter to tree"),icon_class:"plus-button",on_click:function(){e.set("in_ptree",!0),t.hide(),n.show(),$(this).hide(),i.$el.find(".icon-button.toggle").show()}},{title:(0,h.default)("Remove parameter from tree"),icon_class:"toggle",on_click:function(){e.set("in_ptree",!1),n.hide(),t.show(),$(this).hide(),i.$el.find(".icon-button.plus-button").show()}}],{});this.$el.prepend(o.$el),e.get("in_ptree")?(t.hide(),i.$el.find(".icon-button.plus-button").hide()):(i.$el.find(".icon-button.toggle").hide(),n.hide()),m.each(["min","max","num_samples"],function(t){n.find("."+t).change(function(){e.set(t,parseFloat($(this).val()))})})}}),T=Backbone.View.extend({className:"tree-design",initialize:function(e){this.render()},render:function(){var e=new v.default.ToolFormView({model:this.model.get("tool")});e.render(),this.$el.append(e.$el);var t=this.model.get("tool").get("inputs");this.$el.find(".form-row").not(".form-actions").each(function(e){new N({model:t.at(e),tool_row:$(this)})})}}),O=Backbone.View.extend({className:"tool-parameter-tree",initialize:function(e){this.model.on("change:tree_data",this.render,this)},render:function(){this.$el.children().remove();var e=this.model.get_tree_params();if(e.length){this.width=100*(2+e.length),this.height=15*this.model.get_num_leaves();var t=this,n=g.layout.cluster().size([this.height,this.width-160]),a=g.svg.diagonal().projection(function(e){return[e.y,e.x]}),i=n.nodes(this.model.get("tree_data")),o=m.uniq(m.pluck(i,"y"));m.each(e,function(e,n){var a=o[n+1],i=$("#center").position().left;t.$el.append($("<div>").addClass("label").text(e.get("label")).css("left",a+i))});var r=g.select(this.$el[0]).append("svg").attr("width",this.width).attr("height",this.height+30).append("g").attr("transform","translate(40, 20)"),l=(r.selectAll("path.link").data(n.links(i)).enter().append("path").attr("class","link").attr("d",a),r.selectAll("g.node").data(i).enter().append("g").attr("class","node").attr("transform",function(e){return"translate("+e.y+","+e.x+")"}).on("mouseover",function(e){var n=m.pluck(t.model.get_connected_nodes(e),"id");l.filter(function(e){return void 0!==m.find(n,function(t){return t===e.id})}).style("fill","#f00")}).on("mouseout",function(){l.style("fill","#000")}));l.append("circle").attr("r",9),l.append("text").attr("dx",function(e){return e.children?-12:12}).attr("dy",3).attr("text-anchor",function(e){return e.children?"end":"start"}).text(function(e){return e.name})}}}),F=Backbone.View.extend({className:"Sweepster",helpText:"<div><h4>Getting Started</h4><ol><li>Create a parameter tree by using the icons next to the tool's parameter names to add or remove parameters.<li>Adjust the tree by using parameter inputs to select min, max, and number of samples<li>Run the tool with different settings by clicking on tree nodes</ol></div>",initialize:function(e){this.canvas_manager=new p.default.CanvasManager(this.$el.parents("body")),this.tool_param_tree_view=new O({model:this.model.get("parameter_tree")}),this.track_collection_container=$("<table/>").addClass("tracks"),this.model.get("parameter_tree").on("change:tree_data",this.handle_node_clicks,this);var t=this;this.model.get("tracks").each(function(e){e.get("track").view=t}),this.config=w.default.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"},{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"}],{})},render:function(){var e=new T({model:this.model.get("parameter_tree")});$("#left").append(e.$el);var t=this,n=t.model.get("regions"),a=$("<tr/>").appendTo(this.track_collection_container);n.each(function(e){a.append($("<th>").text(e.toString()))}),a.children().first().attr("colspan",2);var i=$("<div>").addClass("tiles");$("#right").append(i.append(this.track_collection_container)),t.model.get("tracks").each(function(e){t.add_track(e)});var o=$(this.helpText).addClass("help"),r=b.default.create_icon_buttons_menu([{title:(0,h.default)("Close"),icon_class:"cross-circle",on_click:function(){$(".tooltip").remove(),o.remove()}}]);o.prepend(r.$el.css("float","right")),$("#center").append(o),this.tool_param_tree_view.render(),$("#center").append(this.tool_param_tree_view.$el),this.handle_node_clicks();var l=b.default.create_icon_buttons_menu([{icon_class:"chevron-expand",title:"Set display mode"},{icon_class:"cross-circle",title:(0,h.default)("Close"),on_click:function(){window.location="${h.url_for( controller='visualization', action='list' )}"}}],{tooltip_config:{placement:"bottom"}}),s=["Squish","Pack"],c={};m.each(s,function(e){c[e]=function(){t.model.set("default_mode",e),t.model.get("tracks").each(function(t){t.set("mode",e)})}}),make_popupmenu(l.$el.find(".chevron-expand"),c),l.$el.attr("style","float: right"),$("#right .unified-panel-header-inner").append(l.$el)},get_base_color:function(e){return this.config.get_value(e.toLowerCase()+"_color")||this.config.get_value("n_color")},run_tool_on_dataset:function(e){var t=this.model.get("tool"),n=t.get("name"),a=this.model.get("dataset");t.set_input_values(e.get("values")),$.when(t.rerun(a)).then(function(e){}),show_modal("Running "+n+" on complete dataset",n+" is running on dataset '"+a.get("name")+"'. Outputs are in the dataset's history.",{Ok:function(){hide_modal()}})},add_track:function(e){var t=this,n=this.model.get("parameter_tree");t.model.add_track(e);var a=new A({model:e,canvas_manager:t.canvas_manager});return a.on("run_on_dataset",t.run_tool_on_dataset,t),t.track_collection_container.append(a.$el),a.$el.hover(function(){var a=n.get_leaf(e.get("settings").get("values")),i=m.pluck(n.get_connected_nodes(a),"id");g.select(t.tool_param_tree_view.$el[0]).selectAll("g.node").filter(function(e){return void 0!==m.find(i,function(t){return t===e.id})}).style("fill","#f00")},function(){g.select(t.tool_param_tree_view.$el[0]).selectAll("g.node").style("fill","#000")}),e},handle_node_clicks:function(){var e=this,t=this.model.get("parameter_tree"),n=this.model.get("regions");g.select(this.tool_param_tree_view.$el[0]).selectAll("g.node").on("click",function(a,i){var o=e.model.get("tool"),r=e.model.get("dataset"),l=t.get_node_settings(a),s=$.Deferred();l.length>=10?show_modal("Whoa there cowboy!","You clicked on a node to try "+e.model.get("tool").get("name")+" with "+l.length+" different combinations of settings. You can only run 10 jobs at a time.",{Ok:function(){hide_modal(),s.resolve(!1)}}):s.resolve(!0),$.when(s).then(function(t){if(t){var a=m.map(l,function(t){var a=new z({settings:t,regions:n,mode:e.model.get("default_mode")});return e.add_track(a),a});m.each(a,function(t,a){setTimeout(function(){o.set_input_values(t.get("settings").get("values")),$.when(o.rerun(r,n)).then(function(n){var a=n.first(),i=a.get("track_config");i.dataset=a,i.tool=null,i.prefs=e.config.to_key_value_dict();var o=f.default.object_from_template(i,e,null);o.init_for_tool_data(),t.set("track",o)})},1e4*a)})}})})}});e.default={SweepsterVisualization:S,SweepsterVisualizationView:F}});
\ No newline at end of file
diff --git a/static/scripts/viz/trackster.js b/static/scripts/viz/trackster.js
index 7d95716220d..1114b313067 100644
--- a/static/scripts/viz/trackster.js
+++ b/static/scripts/viz/trackster.js
@@ -1 +1 @@
-define("viz/trackster",["exports","libs/underscore","viz/trackster/tracks","viz/visualization","mvc/ui/icon-button","utils/query-string-parsing","mvc/grid/grid-view","utils/utils","libs/jquery/jquery.event.drag","libs/jquery/jquery.event.hover","libs/jquery/jquery.mousewheel","libs/jquery/jquery-ui","libs/jquery/select2","libs/farbtastic","libs/jquery/jquery.form","libs/jquery/jquery.rating","ui/editable-text"],function(e,t,a,i,o,n,r,s){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var d=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var a in e)Object.prototype.hasOwnProperty.call(e,a)&&(t[a]=e[a]);return t.default=e,t}(t),c=l(a),u=l(i),f=l(o),v=l(n),_=l(r),h=l(s),w=null,b=null,p=function(){this.initialize&&this.initialize.apply(this,arguments)};p.extend=Backbone.Model.extend;var y=p.extend({initialize:function(e){h.default.cssLoadFile("static/style/jquery.rating.css"),h.default.cssLoadFile("static/style/autocomplete_tagging.css"),h.default.cssLoadFile("static/style/jquery-ui/smoothness/jquery-ui.css"),h.default.cssLoadFile("static/style/library.css"),h.default.cssLoadFile("static/style/trackster.css"),this.baseURL=e},save_viz:function(){Galaxy.modal.show({title:"Saving...",body:"progress"});var e=[];$(".bookmark").each(function(){e.push({position:$(this).children(".position").text(),annotation:$(this).children(".annotation").text()})});var t=b.overview_drawable?b.overview_drawable.config.get_value("name"):null,a={view:b.to_dict(),viewport:{chrom:b.chrom,start:b.low,end:b.high,overview:t},bookmarks:e};return $.ajax({url:Galaxy.root+"visualization/save",type:"POST",dataType:"json",data:{id:b.vis_id,title:b.config.get_value("name"),dbkey:b.dbkey,type:"trackster",vis_json:JSON.stringify(a)}}).success(function(e){Galaxy.modal.hide(),b.vis_id=e.vis_id,b.has_changes=!1,window.history.pushState({},"",e.url+window.location.hash)}).error(function(){Galaxy.modal.show({title:"Could Not Save",body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})},createButtonMenu:function(){var e=this,t=f.default.create_icon_buttons_menu([{icon_class:"plus-button",title:"Add tracks",on_click:function(){u.default.select_datasets({dbkey:b.dbkey},function(e){d.each(e,function(e){b.add_drawable(c.default.object_from_template(e,b,b))})})}},{icon_class:"block--plus",title:"Add group",on_click:function(){b.add_drawable(new c.default.DrawableGroup(b,b,{name:"New Group"}))}},{icon_class:"bookmarks",title:"Bookmarks",on_click:function(){force_right_panel("0px"==$("div#right").css("right")?"hide":"show")}},{icon_class:"globe",title:"Circster",on_click:function(){window.location=e.baseURL+"visualization/circster?id="+b.vis_id}},{icon_class:"disk--arrow",title:"Save",on_click:function(){e.save_viz()}},{icon_class:"cross-circle",title:"Close",on_click:function(){e.handle_unsaved_changes(b)}}],{tooltip_config:{placement:"bottom"}});return this.buttonMenu=t,t},add_bookmark:function(e,t,a){var i=$("#right .unified-panel-body"),o=$("<div/>").addClass("bookmark").appendTo(i),n=$("<div/>").addClass("position").appendTo(o),r=($("<a href=''/>").text(e).appendTo(n).click(function(){return b.go_to(e),!1}),$("<div/>").text(t).appendTo(o));if(a){var s=$("<div/>").addClass("delete-icon-container").prependTo(o).click(function(){return o.slideUp("fast"),o.remove(),b.has_changes=!0,!1});$("<a href=''/>").addClass("icon-button delete").appendTo(s);r.make_text_editable({num_rows:3,use_textarea:!0,help_text:"Edit bookmark note"}).addClass("annotation")}return b.has_changes=!0,o},create_visualization:function(e,t,a,i,o){var n=this,r=new c.default.TracksterView(d.extend(e,{header:!1}));return r.editor=!0,$.when(r.load_chroms_deferred).then(function(e){if(t){var s=t.chrom,l=t.start,d=t.end,u=t.overview;s&&void 0!==l&&d?r.change_chrom(s,l,d):r.change_chrom(e[0].chrom)}else r.change_chrom(e[0].chrom);if(a)for(v=0;v<a.length;v++)r.add_drawable(c.default.object_from_template(a[v],r,r));for(v=0;v<r.drawables.length;v++)if(r.drawables[v].config.get_value("name")===u){r.set_overview(r.drawables[v]);break}if(i)for(var f,v=0;v<i.length;v++)f=i[v],n.add_bookmark(f.position,f.annotation,o);r.has_changes=!1}),this.set_up_router({view:r}),r},set_up_router:function(e){new u.default.TrackBrowserRouter(e),Backbone.history.start()},init_keyboard_nav:function(e){$(document).keyup(function(t){if(!$(t.srcElement).is(":input"))switch(t.which){case 37:e.move_fraction(.25);break;case 38:Math.round(e.viewport_container.height()/15);e.viewport_container.scrollTop(e.viewport_container.scrollTop()-20);break;case 39:e.move_fraction(-.25);break;case 40:Math.round(e.viewport_container.height()/15);e.viewport_container.scrollTop(e.viewport_container.scrollTop()+20)}})},handle_unsaved_changes:function(e){if(e.has_changes){var t=this;Galaxy.modal.show({title:"Close visualization",body:"There are unsaved changes to your visualization which will be lost if you do not save them.",buttons:{Cancel:function(){Galaxy.modal.hide()},"Leave without Saving":function(){$(window).off("beforeunload"),window.location=Galaxy.root+"visualization"},Save:function(){$.when(t.save_viz()).then(function(){window.location=Galaxy.root+"visualization"})}}})}else window.location=Galaxy.root+"visualization"}}),g=Backbone.View.extend({initialize:function(){(w=new y(Galaxy.root)).createButtonMenu(),w.buttonMenu.$el.attr("style","float: right"),$("#center .unified-panel-header-inner").append(w.buttonMenu.$el),$("#right .unified-panel-title").append("Bookmarks"),$("#right .unified-panel-icons").append("<a id='add-bookmark-button' class='icon-button menu-button plus-button' href='javascript:void(0);' title='Add bookmark'></a>"),$("#right-border").click(function(){b.resize_window()}),force_right_panel("hide"),galaxy_config.app.id?this.view_existing():v.default.get("dataset_id")?this.choose_existing_or_new():this.view_new()},choose_existing_or_new:function(){var e=this,t=v.default.get("dbkey"),a={},i={dbkey:t,dataset_id:v.default.get("dataset_id"),hda_ldda:v.default.get("hda_ldda"),gene_region:v.default.get("gene_region")};t&&(a["f-dbkey"]=t),Galaxy.modal.show({title:"View Data in a New or Saved Visualization?",body:"<p><ul style='list-style: disc inside none'>You can add this dataset as:<li>a new track to one of your existing, saved Trackster sessions if they share the genome build: <b>"+(t||"Not available.")+"</b></li><li>or create a new session with this dataset as the only track</li></ul></p>",buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"View in saved visualization":function(){e.view_in_saved(i)},"View in new visualization":function(){e.view_new()}}})},view_in_saved:function(e){var t=new _.default({url_base:Galaxy.root+"visualization/list_tracks",dict_format:!0,embedded:!0});Galaxy.modal.show({title:"Add Data to Saved Visualization",body:t.$el,buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"Add to visualization":function(){$(parent.document).find("input[name=id]:checked").each(function(){e.id=$(this).val(),window.location=Galaxy.root+"visualization/trackster?"+$.param(e)})}}})},view_existing:function(){var e=galaxy_config.app.viz_config;b=w.create_visualization({container:$("#center .unified-panel-body"),name:e.title,vis_id:e.vis_id,dbkey:e.dbkey},e.viewport,e.tracks,e.bookmarks,!0),this.init_editor()},view_new:function(){var e=this;$.ajax({url:Galaxy.root+"api/genomes?chrom_info=True",data:{},error:function(){alert("Couldn't create new browser.")},success:function(t){Galaxy.modal.show({title:"New Visualization",body:e.template_view_new(t),buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},Create:function(){e.create_browser($("#new-title").val(),$("#new-dbkey").val()),Galaxy.modal.hide()}}});var a=t.map(function(e){return e[1]});galaxy_config.app.default_dbkey&&d.contains(a,galaxy_config.app.default_dbkey)&&$("#new-dbkey").val(galaxy_config.app.default_dbkey),$("#new-title").focus(),$("select[name='dbkey']").select2(),$("#overlay").css("overflow","auto")}})},template_view_new:function(e){for(var t='<form id="new-browser-form" action="javascript:void(0);" method="post" onsubmit="return false;"><div class="form-row"><label for="new-title">Browser name:</label><div class="form-row-input"><input type="text" name="title" id="new-title" value="Unnamed"></input></div><div style="clear: both;"></div></div><div class="form-row"><label for="new-dbkey">Reference genome build (dbkey): </label><div class="form-row-input"><select name="dbkey" id="new-dbkey">',a=0;a<e.length;a++)t+='<option value="'+e[a][1]+'">'+e[a][0]+"</option>";return t+='</select></div><div style="clear: both;"></div></div><div class="form-row">Is the build not listed here? <a href="'+Galaxy.root+'custom_builds">Add a Custom Build</a></div></form>'},create_browser:function(e,t){$(document).trigger("convert_to_values"),b=w.create_visualization({container:$("#center .unified-panel-body"),name:e,dbkey:t},galaxy_config.app.gene_region),this.init_editor(),b.editor=!0},init_editor:function(){$("#center .unified-panel-title").text(b.config.get_value("name")+" ("+b.dbkey+")"),galaxy_config.app.add_dataset&&$.ajax({url:Galaxy.root+"api/datasets/"+galaxy_config.app.add_dataset,data:{hda_ldda:"hda",data_type:"track_config"},dataType:"json",success:function(e){b.add_drawable(c.default.object_from_template(e,b,b))}}),$("#add-bookmark-button").click(function(){var e=b.chrom+":"+b.low+"-"+b.high;return w.add_bookmark(e,"Bookmark description",!0)}),w.init_keyboard_nav(b),$(window).on("beforeunload",function(){if(b.has_changes)return"There are unsaved changes to your visualization that will be lost if you leave this page."})}});e.default={TracksterUI:y,GalaxyApp:g}});
\ No newline at end of file
+define("viz/trackster",["exports","utils/localization","libs/underscore","viz/trackster/tracks","viz/visualization","mvc/ui/icon-button","utils/query-string-parsing","mvc/grid/grid-view","utils/utils","libs/jquery/jquery.event.drag","libs/jquery/jquery.event.hover","libs/jquery/jquery.mousewheel","libs/jquery/jquery-ui","libs/jquery/select2","libs/farbtastic","libs/jquery/jquery.form","libs/jquery/jquery.rating","ui/editable-text"],function(e,t,a,i,o,n,l,r,s){"use strict";function d(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var c=d(t),u=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var a in e)Object.prototype.hasOwnProperty.call(e,a)&&(t[a]=e[a]);return t.default=e,t}(a),f=d(i),v=d(o),_=d(n),h=d(l),w=d(r),b=d(s),p=null,y=null,g=function(){this.initialize&&this.initialize.apply(this,arguments)};g.extend=Backbone.Model.extend;var m=g.extend({initialize:function(e){b.default.cssLoadFile("static/style/jquery.rating.css"),b.default.cssLoadFile("static/style/autocomplete_tagging.css"),b.default.cssLoadFile("static/style/jquery-ui/smoothness/jquery-ui.css"),b.default.cssLoadFile("static/style/library.css"),b.default.cssLoadFile("static/style/trackster.css"),this.baseURL=e},save_viz:function(){Galaxy.modal.show({title:"Saving...",body:"progress"});var e=[];$(".bookmark").each(function(){e.push({position:$(this).children(".position").text(),annotation:$(this).children(".annotation").text()})});var t=y.overview_drawable?y.overview_drawable.config.get_value("name"):null,a={view:y.to_dict(),viewport:{chrom:y.chrom,start:y.low,end:y.high,overview:t},bookmarks:e};return $.ajax({url:Galaxy.root+"visualization/save",type:"POST",dataType:"json",data:{id:y.vis_id,title:y.config.get_value("name"),dbkey:y.dbkey,type:"trackster",vis_json:JSON.stringify(a)}}).success(function(e){Galaxy.modal.hide(),y.vis_id=e.vis_id,y.has_changes=!1,window.history.pushState({},"",e.url+window.location.hash)}).error(function(){Galaxy.modal.show({title:(0,c.default)("Could Not Save"),body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})},createButtonMenu:function(){var e=this,t=_.default.create_icon_buttons_menu([{icon_class:"plus-button",title:(0,c.default)("Add tracks"),on_click:function(){v.default.select_datasets({dbkey:y.dbkey},function(e){u.each(e,function(e){y.add_drawable(f.default.object_from_template(e,y,y))})})}},{icon_class:"block--plus",title:(0,c.default)("Add group"),on_click:function(){y.add_drawable(new f.default.DrawableGroup(y,y,{name:"New Group"}))}},{icon_class:"bookmarks",title:(0,c.default)("Bookmarks"),on_click:function(){force_right_panel("0px"==$("div#right").css("right")?"hide":"show")}},{icon_class:"globe",title:(0,c.default)("Circster"),on_click:function(){window.location=e.baseURL+"visualization/circster?id="+y.vis_id}},{icon_class:"disk--arrow",title:(0,c.default)("Save"),on_click:function(){e.save_viz()}},{icon_class:"cross-circle",title:(0,c.default)("Close"),on_click:function(){e.handle_unsaved_changes(y)}}],{tooltip_config:{placement:"bottom"}});return this.buttonMenu=t,t},add_bookmark:function(e,t,a){var i=$("#right .unified-panel-body"),o=$("<div/>").addClass("bookmark").appendTo(i),n=$("<div/>").addClass("position").appendTo(o),l=($("<a href=''/>").text(e).appendTo(n).click(function(){return y.go_to(e),!1}),$("<div/>").text(t).appendTo(o));if(a){var r=$("<div/>").addClass("delete-icon-container").prependTo(o).click(function(){return o.slideUp("fast"),o.remove(),y.has_changes=!0,!1});$("<a href=''/>").addClass("icon-button delete").appendTo(r);l.make_text_editable({num_rows:3,use_textarea:!0,help_text:"Edit bookmark note"}).addClass("annotation")}return y.has_changes=!0,o},create_visualization:function(e,t,a,i,o){var n=this,l=new f.default.TracksterView(u.extend(e,{header:!1}));return l.editor=!0,$.when(l.load_chroms_deferred).then(function(e){if(t){var r=t.chrom,s=t.start,d=t.end,c=t.overview;r&&void 0!==s&&d?l.change_chrom(r,s,d):l.change_chrom(e[0].chrom)}else l.change_chrom(e[0].chrom);if(a)for(v=0;v<a.length;v++)l.add_drawable(f.default.object_from_template(a[v],l,l));for(v=0;v<l.drawables.length;v++)if(l.drawables[v].config.get_value("name")===c){l.set_overview(l.drawables[v]);break}if(i)for(var u,v=0;v<i.length;v++)u=i[v],n.add_bookmark(u.position,u.annotation,o);l.has_changes=!1}),this.set_up_router({view:l}),l},set_up_router:function(e){new v.default.TrackBrowserRouter(e),Backbone.history.start()},init_keyboard_nav:function(e){$(document).keyup(function(t){if(!$(t.srcElement).is(":input"))switch(t.which){case 37:e.move_fraction(.25);break;case 38:Math.round(e.viewport_container.height()/15);e.viewport_container.scrollTop(e.viewport_container.scrollTop()-20);break;case 39:e.move_fraction(-.25);break;case 40:Math.round(e.viewport_container.height()/15);e.viewport_container.scrollTop(e.viewport_container.scrollTop()+20)}})},handle_unsaved_changes:function(e){if(e.has_changes){var t=this;Galaxy.modal.show({title:(0,c.default)("Close visualization"),body:"There are unsaved changes to your visualization which will be lost if you do not save them.",buttons:{Cancel:function(){Galaxy.modal.hide()},"Leave without Saving":function(){$(window).off("beforeunload"),window.location=Galaxy.root+"visualization"},Save:function(){$.when(t.save_viz()).then(function(){window.location=Galaxy.root+"visualization"})}}})}else window.location=Galaxy.root+"visualization"}}),k=Backbone.View.extend({initialize:function(){(p=new m(Galaxy.root)).createButtonMenu(),p.buttonMenu.$el.attr("style","float: right"),$("#center .unified-panel-header-inner").append(p.buttonMenu.$el),$("#right .unified-panel-title").append("Bookmarks"),$("#right .unified-panel-icons").append("<a id='add-bookmark-button' class='icon-button menu-button plus-button' href='javascript:void(0);' title='Add bookmark'></a>"),$("#right-border").click(function(){y.resize_window()}),force_right_panel("hide"),galaxy_config.app.id?this.view_existing():h.default.get("dataset_id")?this.choose_existing_or_new():this.view_new()},choose_existing_or_new:function(){var e=this,t=h.default.get("dbkey"),a={},i={dbkey:t,dataset_id:h.default.get("dataset_id"),hda_ldda:h.default.get("hda_ldda"),gene_region:h.default.get("gene_region")};t&&(a["f-dbkey"]=t),Galaxy.modal.show({title:"View Data in a New or Saved Visualization?",body:"<p><ul style='list-style: disc inside none'>You can add this dataset as:<li>a new track to one of your existing, saved Trackster sessions if they share the genome build: <b>"+(t||"Not available.")+"</b></li><li>or create a new session with this dataset as the only track</li></ul></p>",buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"View in saved visualization":function(){e.view_in_saved(i)},"View in new visualization":function(){e.view_new()}}})},view_in_saved:function(e){var t=new w.default({url_base:Galaxy.root+"visualization/list_tracks",dict_format:!0,embedded:!0});Galaxy.modal.show({title:(0,c.default)("Add Data to Saved Visualization"),body:t.$el,buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"Add to visualization":function(){$(parent.document).find("input[name=id]:checked").each(function(){e.id=$(this).val(),window.location=Galaxy.root+"visualization/trackster?"+$.param(e)})}}})},view_existing:function(){var e=galaxy_config.app.viz_config;y=p.create_visualization({container:$("#center .unified-panel-body"),name:e.title,vis_id:e.vis_id,dbkey:e.dbkey},e.viewport,e.tracks,e.bookmarks,!0),this.init_editor()},view_new:function(){var e=this;$.ajax({url:Galaxy.root+"api/genomes?chrom_info=True",data:{},error:function(){alert("Couldn't create new browser.")},success:function(t){Galaxy.modal.show({title:(0,c.default)("New Visualization"),body:e.template_view_new(t),buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},Create:function(){e.create_browser($("#new-title").val(),$("#new-dbkey").val()),Galaxy.modal.hide()}}});var a=t.map(function(e){return e[1]});galaxy_config.app.default_dbkey&&u.contains(a,galaxy_config.app.default_dbkey)&&$("#new-dbkey").val(galaxy_config.app.default_dbkey),$("#new-title").focus(),$("select[name='dbkey']").select2(),$("#overlay").css("overflow","auto")}})},template_view_new:function(e){for(var t='<form id="new-browser-form" action="javascript:void(0);" method="post" onsubmit="return false;"><div class="form-row"><label for="new-title">Browser name:</label><div class="form-row-input"><input type="text" name="title" id="new-title" value="Unnamed"></input></div><div style="clear: both;"></div></div><div class="form-row"><label for="new-dbkey">Reference genome build (dbkey): </label><div class="form-row-input"><select name="dbkey" id="new-dbkey">',a=0;a<e.length;a++)t+='<option value="'+e[a][1]+'">'+e[a][0]+"</option>";return t+='</select></div><div style="clear: both;"></div></div><div class="form-row">Is the build not listed here? <a href="'+Galaxy.root+'custom_builds">Add a Custom Build</a></div></form>'},create_browser:function(e,t){$(document).trigger("convert_to_values"),y=p.create_visualization({container:$("#center .unified-panel-body"),name:e,dbkey:t},galaxy_config.app.gene_region),this.init_editor(),y.editor=!0},init_editor:function(){$("#center .unified-panel-title").text(y.config.get_value("name")+" ("+y.dbkey+")"),galaxy_config.app.add_dataset&&$.ajax({url:Galaxy.root+"api/datasets/"+galaxy_config.app.add_dataset,data:{hda_ldda:"hda",data_type:"track_config"},dataType:"json",success:function(e){y.add_drawable(f.default.object_from_template(e,y,y))}}),$("#add-bookmark-button").click(function(){var e=y.chrom+":"+y.low+"-"+y.high;return p.add_bookmark(e,"Bookmark description",!0)}),p.init_keyboard_nav(y),$(window).on("beforeunload",function(){if(y.has_changes)return"There are unsaved changes to your visualization that will be lost if you leave this page."})}});e.default={TracksterUI:m,GalaxyApp:k}});
\ No newline at end of file
diff --git a/static/scripts/viz/trackster/filters.js b/static/scripts/viz/trackster/filters.js
index b28d62c9634..8960ad95ec4 100644
--- a/static/scripts/viz/trackster/filters.js
+++ b/static/scripts/viz/trackster/filters.js
@@ -1 +1 @@
-define("viz/trackster/filters",["exports","libs/underscore"],function(t,i){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var e=function(t){if(t&&t.__esModule)return t;var i={};if(null!=t)for(var e in t)Object.prototype.hasOwnProperty.call(t,e)&&(i[e]=t[e]);return i.default=t,i}(i).extend,n=function(t){this.manager=null,this.name=t.name,this.index=t.index,this.tool_id=t.tool_id,this.tool_exp_name=t.tool_exp_name};e(n.prototype,{to_dict:function(){return{name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name}}});var a=function(t,i,e){return $("<a/>").attr("href","javascript:void(0);").attr("title",t).addClass("icon-button").addClass(i).tooltip().click(e)},r=function(t){n.call(this,t),this.low="low"in t?t.low:-Number.MAX_VALUE,this.high="high"in t?t.high:Number.MAX_VALUE,this.min="min"in t?t.min:Number.MAX_VALUE,this.max="max"in t?t.max:-Number.MAX_VALUE,this.container=null,this.slider=null,this.slider_label=null;var i=this;i.parent_div=$("<div/>").addClass("filter-row slider-row");var e=$("<div/>").addClass("elt-label").appendTo(i.parent_div),r=($("<span/>").addClass("slider-name").text(i.name+"  ").appendTo(e),$("<span/>").text(this.low+"-"+this.high)),s=$("<span/>").addClass("slider-value").appendTo(e).append("[").append(r).append("]");i.values_span=r;var l=$("<div/>").addClass("slider").appendTo(i.parent_div);i.control_element=$("<div/>").attr("id",i.name+"-filter-control").appendTo(l),i.control_element.slider({range:!0,min:this.min,max:this.max,step:this.get_slider_step(this.min,this.max),values:[this.low,this.high],slide:function(t,e){i.slide(t,e)},change:function(t,e){i.control_element.slider("option","slide").call(i.control_element,t,e)}}),i.slider=i.control_element,i.slider_label=r,function(t,i,e){t.click(function(){var t=i.text(),n=parseFloat(e.slider("option","max")),a=n<=1?4:n<=1e6?n.toString().length:6,r=!1,s=$(this).parents(".slider-row");s.addClass("input"),e.slider("option","values")&&(a=2*a+1,r=!0),i.text(""),$("<input type='text'/>").attr("size",a).attr("maxlength",a).attr("value",t).appendTo(i).focus().select().click(function(t){t.stopPropagation()}).blur(function(){$(this).remove(),i.text(t),s.removeClass("input")}).keyup(function(t){if(27===t.keyCode)$(this).trigger("blur");else if(13===t.keyCode){var i=e.slider("option","min"),n=e.slider("option","max"),a=function(t){return isNaN(t)||t>n||t<i},l=$(this).val();if(r){if(l=l.split("-"),l=[parseFloat(l[0]),parseFloat(l[1])],a(l[0])||a(l[1]))return alert("Parameter value must be in the range ["+i+"-"+n+"]"),$(this)}else if(l=parseFloat(l),a(l))return alert("Parameter value must be in the range ["+i+"-"+n+"]"),$(this);e.slider(r?"values":"value",l),s.removeClass("input")}})})}(s,r,i.control_element);var o=$("<div/>").addClass("display-controls").appendTo(i.parent_div);this.transparency_icon=a("Use filter for data transparency","layer-transparent",function(){i.manager.alpha_filter!==i?(i.manager.alpha_filter=i,i.manager.parent_div.find(".layer-transparent").removeClass("active").hide(),i.transparency_icon.addClass("active").show()):(i.manager.alpha_filter=null,i.transparency_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(o).hide(),this.height_icon=a("Use filter for data height","arrow-resize-090",function(){i.manager.height_filter!==i?(i.manager.height_filter=i,i.manager.parent_div.find(".arrow-resize-090").removeClass("active").hide(),i.height_icon.addClass("active").show()):(i.manager.height_filter=null,i.height_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(o).hide(),i.parent_div.hover(function(){i.transparency_icon.show(),i.height_icon.show()},function(){i.manager.alpha_filter!==i&&i.transparency_icon.hide(),i.manager.height_filter!==i&&i.height_icon.hide()}),$("<div style='clear: both;'/>").appendTo(i.parent_div)};e(r.prototype,{to_dict:function(){var t=n.prototype.to_dict.call(this);return e(t,{type:"number",min:this.min,max:this.max,low:this.low,high:this.high})},copy:function(){return new r({name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name})},get_slider_step:function(t,i){return i-t<=2?.01:1},slide:function(t,i){var e=i.values;this.values_span.text(e[0]+"-"+e[1]),this.low=e[0],this.high=e[1];var n=this;setTimeout(function(){e[0]===n.low&&e[1]===n.high&&n.manager.track.request_draw({force:!0,clear_after:!0})},25)},applies_to:function(t){return t.length>this.index},_keep_val:function(t){return isNaN(t)||t>=this.low&&t<=this.high},keep:function(t){if(!this.applies_to(t))return!0;var i=t[this.index];if(i instanceof Array){for(var e=!0,n=0;n<i.length;n++)if(!this._keep_val(i[n])){e=!1;break}return e}return this._keep_val(t[this.index])},update_attrs:function(t){var i=!1;if(!this.applies_to(t))return i;var e=t[this.index];e instanceof Array||(e=[e]);for(var n=0;n<e.length;n++){var a=e[n];a<this.min&&(this.min=Math.floor(a),i=!0),a>this.max&&(this.max=Math.ceil(a),i=!0)}return i},update_ui_elt:function(){this.min<this.max?this.parent_div.show():this.parent_div.hide();var t=this.slider.slider("option","min"),i=this.slider.slider("option","max");(this.min<t||this.max>i)&&(this.slider.slider("option","min",this.min),this.slider.slider("option","max",this.max),this.slider.slider("option","step",this.get_slider_step(this.min,this.max)),this.slider.slider("option","values",[this.min,this.max]))}});var s=function(t,i){if(this.track=t,this.alpha_filter=null,this.height_filter=null,this.filters=[],this.parent_div=$("<div/>").addClass("filters").hide(),this.parent_div.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).bind("keydown",function(t){t.stopPropagation()}),i&&"filters"in i){for(var e,n=("alpha_filter"in i?i.alpha_filter:null),a=("height_filter"in i?i.height_filter:null),s=i.filters,l=0;l<s.length;l++)"number"===s[l].type?(e=new r(s[l]),this.add_filter(e),e.name===n&&(this.alpha_filter=e,e.transparency_icon.addClass("active").show()),e.name===a&&(this.height_filter=e,e.height_icon.addClass("active").show())):console.log("ERROR: unsupported filter: ",name,type);"visible"in i&&i.visible&&this.parent_div.show()}if(0!==this.filters.length){var o=$("<div/>").addClass("param-row").appendTo(this.parent_div),h=this;$("<input type='submit'/>").attr("value","Run on complete dataset").appendTo(o).click(function(){h.run_on_dataset()})}};e(s.prototype,{show:function(){this.parent_div.show()},hide:function(){this.parent_div.hide()},toggle:function(){this.parent_div.toggle()},visible:function(){return this.parent_div.is(":visible")},to_dict:function(){for(var t,i={},e=[],n=0;n<this.filters.length;n++)t=this.filters[n],e.push(t.to_dict());return i.filters=e,i.alpha_filter=this.alpha_filter?this.alpha_filter.name:null,i.height_filter=this.height_filter?this.height_filter.name:null,i.visible=this.parent_div.is(":visible"),i},copy:function(t){for(var i=new s(t),e=0;e<this.filters.length;e++)i.add_filter(this.filters[e].copy());return i},add_filter:function(t){t.manager=this,this.parent_div.append(t.parent_div),this.filters.push(t)},remove_all:function(){this.filters=[],this.parent_div.children().remove()},init_filters:function(){for(var t=0;t<this.filters.length;t++)this.filters[t].update_ui_elt()},clear_filters:function(){for(var t=0;t<this.filters.length;t++){var i=this.filters[t];i.slider.slider("option","values",[i.min,i.max])}this.alpha_filter=null,this.height_filter=null,this.parent_div.find(".icon-button").hide()},run_on_dataset:function(){for(var t,i,e=function(t,i,e){return i in t||(t[i]=e),t[i]},n={},a=0;a<this.filters.length;a++)(t=this.filters[a]).tool_id&&(t.min!==t.low&&((i=e(n,t.tool_id,[]))[i.length]=t.tool_exp_name+" >= "+t.low),t.max!==t.high&&((i=e(n,t.tool_id,[]))[i.length]=t.tool_exp_name+" <= "+t.high));var r=[];for(var s in n)r[r.length]=[s,n[s]];!function t(i,e){var n=e[0],a=n[0],r={cond:"("+n[1].join(") and (")+")",input:i,target_dataset_id:i,tool_id:a};e=e.slice(1),$.getJSON(run_tool_url,r,function(i){i.error?Galaxy.modal.show({title:"Filter Dataset",body:"Error running tool "+a,buttons:{Close:Galaxy.modal.hide()}}):0===e.length?Galaxy.modal.show({title:"Filtering Dataset",body:"Filter(s) are running on the complete dataset. Outputs are in dataset's history.",buttons:{Close:Galaxy.modal.hide()}}):t(i.dataset_id,e)})}(this.track.dataset_id,r)}}),t.default={FiltersManager:s,NumberFilter:r}});
\ No newline at end of file
+define("viz/trackster/filters",["exports","utils/localization","libs/underscore"],function(t,i,e){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=function(t){return t&&t.__esModule?t:{default:t}}(i),a=function(t){if(t&&t.__esModule)return t;var i={};if(null!=t)for(var e in t)Object.prototype.hasOwnProperty.call(t,e)&&(i[e]=t[e]);return i.default=t,i}(e).extend,r=function(t){this.manager=null,this.name=t.name,this.index=t.index,this.tool_id=t.tool_id,this.tool_exp_name=t.tool_exp_name};a(r.prototype,{to_dict:function(){return{name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name}}});var s=function(t,i,e){return $("<a/>").attr("href","javascript:void(0);").attr("title",t).addClass("icon-button").addClass(i).tooltip().click(e)},l=function(t){r.call(this,t),this.low="low"in t?t.low:-Number.MAX_VALUE,this.high="high"in t?t.high:Number.MAX_VALUE,this.min="min"in t?t.min:Number.MAX_VALUE,this.max="max"in t?t.max:-Number.MAX_VALUE,this.container=null,this.slider=null,this.slider_label=null;var i=this;i.parent_div=$("<div/>").addClass("filter-row slider-row");var e=$("<div/>").addClass("elt-label").appendTo(i.parent_div),n=($("<span/>").addClass("slider-name").text(i.name+"  ").appendTo(e),$("<span/>").text(this.low+"-"+this.high)),a=$("<span/>").addClass("slider-value").appendTo(e).append("[").append(n).append("]");i.values_span=n;var l=$("<div/>").addClass("slider").appendTo(i.parent_div);i.control_element=$("<div/>").attr("id",i.name+"-filter-control").appendTo(l),i.control_element.slider({range:!0,min:this.min,max:this.max,step:this.get_slider_step(this.min,this.max),values:[this.low,this.high],slide:function(t,e){i.slide(t,e)},change:function(t,e){i.control_element.slider("option","slide").call(i.control_element,t,e)}}),i.slider=i.control_element,i.slider_label=n,function(t,i,e){t.click(function(){var t=i.text(),n=parseFloat(e.slider("option","max")),a=n<=1?4:n<=1e6?n.toString().length:6,r=!1,s=$(this).parents(".slider-row");s.addClass("input"),e.slider("option","values")&&(a=2*a+1,r=!0),i.text(""),$("<input type='text'/>").attr("size",a).attr("maxlength",a).attr("value",t).appendTo(i).focus().select().click(function(t){t.stopPropagation()}).blur(function(){$(this).remove(),i.text(t),s.removeClass("input")}).keyup(function(t){if(27===t.keyCode)$(this).trigger("blur");else if(13===t.keyCode){var i=e.slider("option","min"),n=e.slider("option","max"),a=function(t){return isNaN(t)||t>n||t<i},l=$(this).val();if(r){if(l=l.split("-"),l=[parseFloat(l[0]),parseFloat(l[1])],a(l[0])||a(l[1]))return alert("Parameter value must be in the range ["+i+"-"+n+"]"),$(this)}else if(l=parseFloat(l),a(l))return alert("Parameter value must be in the range ["+i+"-"+n+"]"),$(this);e.slider(r?"values":"value",l),s.removeClass("input")}})})}(a,n,i.control_element);var o=$("<div/>").addClass("display-controls").appendTo(i.parent_div);this.transparency_icon=s("Use filter for data transparency","layer-transparent",function(){i.manager.alpha_filter!==i?(i.manager.alpha_filter=i,i.manager.parent_div.find(".layer-transparent").removeClass("active").hide(),i.transparency_icon.addClass("active").show()):(i.manager.alpha_filter=null,i.transparency_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(o).hide(),this.height_icon=s("Use filter for data height","arrow-resize-090",function(){i.manager.height_filter!==i?(i.manager.height_filter=i,i.manager.parent_div.find(".arrow-resize-090").removeClass("active").hide(),i.height_icon.addClass("active").show()):(i.manager.height_filter=null,i.height_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(o).hide(),i.parent_div.hover(function(){i.transparency_icon.show(),i.height_icon.show()},function(){i.manager.alpha_filter!==i&&i.transparency_icon.hide(),i.manager.height_filter!==i&&i.height_icon.hide()}),$("<div style='clear: both;'/>").appendTo(i.parent_div)};a(l.prototype,{to_dict:function(){var t=r.prototype.to_dict.call(this);return a(t,{type:"number",min:this.min,max:this.max,low:this.low,high:this.high})},copy:function(){return new l({name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name})},get_slider_step:function(t,i){return i-t<=2?.01:1},slide:function(t,i){var e=i.values;this.values_span.text(e[0]+"-"+e[1]),this.low=e[0],this.high=e[1];var n=this;setTimeout(function(){e[0]===n.low&&e[1]===n.high&&n.manager.track.request_draw({force:!0,clear_after:!0})},25)},applies_to:function(t){return t.length>this.index},_keep_val:function(t){return isNaN(t)||t>=this.low&&t<=this.high},keep:function(t){if(!this.applies_to(t))return!0;var i=t[this.index];if(i instanceof Array){for(var e=!0,n=0;n<i.length;n++)if(!this._keep_val(i[n])){e=!1;break}return e}return this._keep_val(t[this.index])},update_attrs:function(t){var i=!1;if(!this.applies_to(t))return i;var e=t[this.index];e instanceof Array||(e=[e]);for(var n=0;n<e.length;n++){var a=e[n];a<this.min&&(this.min=Math.floor(a),i=!0),a>this.max&&(this.max=Math.ceil(a),i=!0)}return i},update_ui_elt:function(){this.min<this.max?this.parent_div.show():this.parent_div.hide();var t=this.slider.slider("option","min"),i=this.slider.slider("option","max");(this.min<t||this.max>i)&&(this.slider.slider("option","min",this.min),this.slider.slider("option","max",this.max),this.slider.slider("option","step",this.get_slider_step(this.min,this.max)),this.slider.slider("option","values",[this.min,this.max]))}});var o=function(t,i){if(this.track=t,this.alpha_filter=null,this.height_filter=null,this.filters=[],this.parent_div=$("<div/>").addClass("filters").hide(),this.parent_div.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).bind("keydown",function(t){t.stopPropagation()}),i&&"filters"in i){for(var e,n=("alpha_filter"in i?i.alpha_filter:null),a=("height_filter"in i?i.height_filter:null),r=i.filters,s=0;s<r.length;s++)"number"===r[s].type?(e=new l(r[s]),this.add_filter(e),e.name===n&&(this.alpha_filter=e,e.transparency_icon.addClass("active").show()),e.name===a&&(this.height_filter=e,e.height_icon.addClass("active").show())):console.log("ERROR: unsupported filter: ",name,type);"visible"in i&&i.visible&&this.parent_div.show()}if(0!==this.filters.length){var o=$("<div/>").addClass("param-row").appendTo(this.parent_div),h=this;$("<input type='submit'/>").attr("value","Run on complete dataset").appendTo(o).click(function(){h.run_on_dataset()})}};a(o.prototype,{show:function(){this.parent_div.show()},hide:function(){this.parent_div.hide()},toggle:function(){this.parent_div.toggle()},visible:function(){return this.parent_div.is(":visible")},to_dict:function(){for(var t,i={},e=[],n=0;n<this.filters.length;n++)t=this.filters[n],e.push(t.to_dict());return i.filters=e,i.alpha_filter=this.alpha_filter?this.alpha_filter.name:null,i.height_filter=this.height_filter?this.height_filter.name:null,i.visible=this.parent_div.is(":visible"),i},copy:function(t){for(var i=new o(t),e=0;e<this.filters.length;e++)i.add_filter(this.filters[e].copy());return i},add_filter:function(t){t.manager=this,this.parent_div.append(t.parent_div),this.filters.push(t)},remove_all:function(){this.filters=[],this.parent_div.children().remove()},init_filters:function(){for(var t=0;t<this.filters.length;t++)this.filters[t].update_ui_elt()},clear_filters:function(){for(var t=0;t<this.filters.length;t++){var i=this.filters[t];i.slider.slider("option","values",[i.min,i.max])}this.alpha_filter=null,this.height_filter=null,this.parent_div.find(".icon-button").hide()},run_on_dataset:function(){for(var t,i,e=function(t,i,e){return i in t||(t[i]=e),t[i]},a={},r=0;r<this.filters.length;r++)(t=this.filters[r]).tool_id&&(t.min!==t.low&&((i=e(a,t.tool_id,[]))[i.length]=t.tool_exp_name+" >= "+t.low),t.max!==t.high&&((i=e(a,t.tool_id,[]))[i.length]=t.tool_exp_name+" <= "+t.high));var s=[];for(var l in a)s[s.length]=[l,a[l]];!function t(i,e){var a=e[0],r=a[0],s={cond:"("+a[1].join(") and (")+")",input:i,target_dataset_id:i,tool_id:r};e=e.slice(1),$.getJSON(run_tool_url,s,function(i){i.error?Galaxy.modal.show({title:(0,n.default)("Filter Dataset"),body:"Error running tool "+r,buttons:{Close:Galaxy.modal.hide()}}):0===e.length?Galaxy.modal.show({title:(0,n.default)("Filtering Dataset"),body:"Filter(s) are running on the complete dataset. Outputs are in dataset's history.",buttons:{Close:Galaxy.modal.hide()}}):t(i.dataset_id,e)})}(this.track.dataset_id,s)}}),t.default={FiltersManager:o,NumberFilter:l}});
\ No newline at end of file
diff --git a/static/scripts/viz/trackster/tracks.js b/static/scripts/viz/trackster/tracks.js
index ab9aad2ce9c..c400591e6cd 100644
--- a/static/scripts/viz/trackster/tracks.js
+++ b/static/scripts/viz/trackster/tracks.js
@@ -1 +1 @@
-define("viz/trackster/tracks",["exports","libs/underscore","viz/visualization","viz/viz_views","viz/trackster/util","viz/trackster/slotting","viz/trackster/painters","viz/trackster/filters","mvc/dataset/data","mvc/tool/tools","utils/config","viz/bbi-data-manager","ui/editable-text"],function(t,e,i,a,n,o,s,r,l,h,d,_){"use strict";function c(t){return t&&t.__esModule?t:{default:t}}function u(t,e){e||(e=0);var i=Math.pow(10,e);return Math.round(t*i)/i}function f(t){var e=$.Deferred();return $.ajax({type:"HEAD",url:t,beforeSend:function(t){t.setRequestHeader("Range","bytes=0-10")},success:function(t,i,a){e.resolve(206===a.status)}}),e}Object.defineProperty(t,"__esModule",{value:!0});var v=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(e),p=c(i),g=c(a),m=c(n),w=c(o),b=c(s),y=c(r),k=c(l),x=c(h),C=c(d),T=c(_),M=v.extend,z={},q=function(t,e){z[t.attr("id")]=e},S=function(t,e,i,a){i=".group",z[t.attr("id")]=a,t.bind("drag",{handle:"."+e,relative:!0},function(t,e){$(this);var a,n,o,s,r,l=$(this).parent(),h=l.children(".track,.group"),d=z[$(this).attr("id")];if(0!==(n=$(this).parents(i)).length){s=(o=n.position().top)+n.outerHeight();var _=z[n.attr("id")];if(e.offsetY<o)return $(this).insertBefore(n),_.remove_drawable(d),void _.container.add_drawable_before(d,_);if(e.offsetY>s)return $(this).insertAfter(n),_.remove_drawable(d),void _.container.add_drawable(d)}for(n=null,r=0;r<h.length;r++)if(a=$(h.get(r)),o=a.position().top,s=o+a.outerHeight(),a.is(i)&&this!==a.get(0)&&e.offsetY>=o&&e.offsetY<=s)return e.offsetY-o<s-e.offsetY?a.find(".content-div").prepend(this):a.find(".content-div").append(this),d.container&&d.container.remove_drawable(d),void z[a.attr("id")].add_drawable(d);for(r=0;r<h.length&&(a=$(h.get(r)),!(e.offsetY<a.position().top)||a.hasClass("reference-track")||a.hasClass("intro"));r++);r===h.length?this!==h.get(r-1)&&(l.append(this),z[l.attr("id")].move_drawable(d,r)):this!==h.get(r)&&($(this).insertBefore(h.get(r)),z[l.attr("id")].move_drawable(d,e.deltaY>0?r-1:r))}).bind("dragstart",function(){$(this).addClass("dragging")}).bind("dragend",function(){$(this).removeClass("dragging")})},A="A converter for this dataset is not installed. Please check your datatypes_conf.xml file.",F=["Histogram","Line","Filled","Intensity"],D=function t(e,i,a){if(t.id_counter||(t.id_counter=0),this.id=t.id_counter++,this.view=e,this.container=i,this.drag_handle_class=a.drag_handle_class,this.is_overview=!1,this.action_icons={},this.config=C.default.ConfigSettingCollection.from_models_and_saved_values(this.config_params,a.prefs),this.config.get_value("name")||this.config.set_value("name",a.name),this.config_onchange&&this.config.on("change",this.config_onchange,this),this.container_div=this.build_container_div(),this.header_div=null,!1!==a.header){var n=new g.default.TrackHeaderView({model:this,id:this.id});this.header_div=n.$el,this.container_div.append(this.header_div);var o=n.icons_div;this.action_icons=n.action_icons,this.container_div.hover(function(){o.show()},function(){o.hide()})}};D.prototype.action_icons_def=[{name:"toggle_icon",title:"Hide/show content",css_class:"toggle",on_click_fn:function(t){t.config.get_value("content_visible")?(t.action_icons.toggle_icon.addClass("toggle-expand").removeClass("toggle"),t.hide_contents(),t.config.set_value("content_visible",!1)):(t.action_icons.toggle_icon.addClass("toggle").removeClass("toggle-expand"),t.config.set_value("content_visible",!0),t.show_contents())}},{name:"settings_icon",title:"Edit settings",css_class:"gear",on_click_fn:function(t){new C.default.ConfigSettingCollectionView({collection:t.config}).render_in_modal("Configure Track")}},{name:"remove_icon",title:"Remove",css_class:"remove-icon",on_click_fn:function(t){$(".tooltip").remove(),t.remove()}}],M(D.prototype,{config_params:[{key:"name",label:"Name",type:"text",default_value:""},{key:"content_visible",type:"bool",default_value:!0,hidden:!0}],config_onchange:function(){},init:function(){},changed:function(){this.view.changed()},can_draw:function(){return!(!this.enabled||!this.config.get_value("content_visible"))},request_draw:function(){},_draw:function(t){},to_dict:function(){},set_name:function(t){this.old_name=this.config.get_value("name"),this.config.set_value("name",t)},revert_name:function(){this.old_name&&this.config.set_value("name",this.old_name)},remove:function(){this.changed(),this.container.remove_drawable(this);var t=this.view;this.container_div.hide(0,function(){$(this).remove(),t.update_intro_div()})},build_container_div:function(){},update_icons:function(){},hide_contents:function(){},show_contents:function(){},get_drawables:function(){}});var V=function(t,e,i){D.call(this,t,e,i),this.obj_type=i.obj_type,this.drawables=[]};M(V.prototype,D.prototype,{unpack_drawables:function(t){this.drawables=[];for(var e,i=0;i<t.length;i++)e=et(t[i],this.view,this),this.add_drawable(e)},init:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].init()},_draw:function(t){for(var e=0;e<this.drawables.length;e++)this.drawables[e]._draw(t)},to_dict:function(){for(var t=[],e=0;e<this.drawables.length;e++)t.push(this.drawables[e].to_dict());return{prefs:this.config.to_key_value_dict(),obj_type:this.obj_type,drawables:t}},add_drawable:function(t){this.drawables.push(t),t.container=this,this.changed()},add_drawable_before:function(t,e){this.changed();var i=this.drawables.indexOf(e);return-1!==i&&(this.drawables.splice(i,0,t),!0)},replace_drawable:function(t,e,i){var a=this.drawables.indexOf(t);return-1!==a&&(this.drawables[a]=e,i&&t.container_div.replaceWith(e.container_div),this.changed()),a},remove_drawable:function(t){var e=this.drawables.indexOf(t);return-1!==e&&(this.drawables.splice(e,1),t.container=null,this.changed(),!0)},move_drawable:function(t,e){var i=this.drawables.indexOf(t);return-1!==i&&(this.drawables.splice(i,1),this.drawables.splice(e,0,t),this.changed(),!0)},get_drawables:function(){return this.drawables},get_tracks:function(t){for(var e,i=this.drawables.slice(0),a=[];0!==i.length;)(e=i.shift())instanceof t?a.push(e):e.drawables&&(i=i.concat(e.drawables));return a}});var j=function(t,e,i){if(M(i,{obj_type:"DrawableGroup",drag_handle_class:"group-handle"}),V.call(this,t,e,i),this.content_div=$("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div),q(this.container_div,this),q(this.content_div,this),S(this.container_div,this.drag_handle_class,".group",this),this.filters_manager=new y.default.FiltersManager(this),this.header_div.after(this.filters_manager.parent_div),this.filters_manager.parent_div.after($("<div style='clear: both'/>")),this.saved_filters_managers=[],"drawables"in i&&this.unpack_drawables(i.drawables),"filters"in i){var a=this.filters_manager;this.filters_manager=new y.default.FiltersManager(this,i.filters),a.parent_div.replaceWith(this.filters_manager.parent_div),i.filters.visible&&this.setup_multitrack_filtering()}};M(j.prototype,D.prototype,V.prototype,{action_icons_def:[D.prototype.action_icons_def[0],D.prototype.action_icons_def[1],{name:"composite_icon",title:"Show composite track",css_class:"layers-stack",on_click_fn:function(t){$(".tooltip").remove(),t.show_composite_track()}},{name:"filters_icon",title:"Filters",css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?(t.filters_manager.clear_filters(),t._restore_filter_managers()):(t.setup_multitrack_filtering(),t.request_draw({clear_tile_cache:!0})),t.filters_manager.toggle()}},D.prototype.action_icons_def[2]],build_container_div:function(){var t=$("<div/>").addClass("group").attr("id","group_"+this.id);return this.container&&this.container.content_div.append(t),t},hide_contents:function(){this.tiles_div.hide()},show_contents:function(){this.tiles_div.show(),this.request_draw()},update_icons:function(){var t=this.drawables.length;if(0===t)this.action_icons.composite_icon.hide(),this.action_icons.filters_icon.hide();else if(1===t)this.action_icons.composite_icon.toggle(this.drawables[0]instanceof E),this.action_icons.filters_icon.hide();else{var e,i,a,n=this.drawables[0].get_type(),o=0;for(e=0;e<t;e++){if((a=this.drawables[e]).get_type()!==n){can_composite=!1;break}a instanceof Z&&o++}if(this.drawables[0]instanceof W?this.action_icons.composite_icon.show():(this.action_icons.composite_icon.hide(),$(".tooltip").remove()),o>1&&o===this.drawables.length){var s,r={};for(a=this.drawables[0],i=0;i<a.filters_manager.filters.length;i++)r[(s=a.filters_manager.filters[i]).name]=[s];for(e=1;e<this.drawables.length;e++)for(a=this.drawables[e],i=0;i<a.filters_manager.filters.length;i++)(s=a.filters_manager.filters[i]).name in r&&r[s.name].push(s);this.filters_manager.remove_all();var l,h;for(var d in r)(l=r[d]).length===o&&(h=new y.default.NumberFilter({name:l[0].name,index:l[0].index}),this.filters_manager.add_filter(h));this.action_icons.filters_icon.toggle(this.filters_manager.filters.length>0)}else this.action_icons.filters_icon.hide()}},_restore_filter_managers:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].filters_manager=this.saved_filters_managers[t];this.saved_filters_managers=[]},setup_multitrack_filtering:function(){if(this.filters_manager.filters.length>0){this.saved_filters_managers=[];for(var t=0;t<this.drawables.length;t++){var e=this.drawables[t];this.saved_filters_managers.push(e.filters_manager),e.filters_manager=this.filters_manager}}this.filters_manager.init_filters()},show_composite_track:function(){var t=new E(this.view,this.view,{name:this.config.get_value("name"),drawables:this.drawables});this.container.replace_drawable(this,t,!0);t.request_draw()},add_drawable:function(t){V.prototype.add_drawable.call(this,t),this.update_icons()},remove_drawable:function(t){V.prototype.remove_drawable.call(this,t),this.update_icons()},to_dict:function(){this.filters_manager.visible()&&this._restore_filter_managers();var t=M(V.prototype.to_dict.call(this),{filters:this.filters_manager.to_dict()});return this.filters_manager.visible()&&this.setup_multitrack_filtering(),t},request_draw:function(t){v.each(this.drawables,function(e){e.request_draw(t)})}});var G=Backbone.View.extend({initialize:function(t){M(t,{obj_type:"View"}),V.call(this,"View",t.container,t),this.chrom=null,this.vis_id=t.vis_id,this.dbkey=t.dbkey,this.stand_alone=void 0===t.stand_alone||t.stand_alone,this.label_tracks=[],this.tracks_to_be_redrawn=[],this.max_low=0,this.max_high=0,this.zoom_factor=3,this.min_separation=30,this.has_changes=!1,this.load_chroms_deferred=null,this.render(),this.canvas_manager=new p.default.CanvasManager(this.container.get(0).ownerDocument),this.reset(),this.config=C.default.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"}],{name:t.name})},render:function(){this.requested_redraw=!1;var t=this.container,e=this;this.top_container=$("<div/>").addClass("top-container").appendTo(t),this.browser_content_div=$("<div/>").addClass("content").appendTo(t),this.bottom_container=$("<div/>").addClass("bottom-container").appendTo(t),this.top_labeltrack=$("<div/>").addClass("top-labeltrack").appendTo(this.top_container),this.viewport_container=$("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div),this.content_div=this.viewport_container,q(this.viewport_container,e),this.intro_div=$("<div/>").addClass("intro").appendTo(this.viewport_container);$("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){p.default.select_datasets({dbkey:e.dbkey},function(t){v.each(t,function(t){e.add_drawable(et(t,e,e))})})});this.nav_container=$("<div/>").addClass("trackster-nav-container").prependTo(this.top_container),this.nav=$("<div/>").addClass("trackster-nav").appendTo(this.nav_container),this.stand_alone&&(this.nav_container.addClass("stand-alone"),this.nav.addClass("stand-alone")),this.overview=$("<div/>").addClass("overview").appendTo(this.bottom_container),this.overview_viewport=$("<div/>").addClass("overview-viewport").appendTo(this.overview),this.overview_close=$("<a/>").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport),this.overview_highlight=$("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport),this.overview_box_background=$("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport),this.overview_box=$("<div/>").addClass("overview-box").appendTo(this.overview_viewport),this.default_overview_height=this.overview_box.height(),this.nav_controls=$("<div/>").addClass("nav-controls").appendTo(this.nav),this.chrom_select=$("<select/>").attr({name:"chrom"}).addClass("chrom-nav").append("<option value=''>Loading</option>").appendTo(this.nav_controls);this.nav_input=$("<input/>").addClass("nav-input").hide().bind("keyup focusout",function(t){"focusout"!==t.type&&13!==(t.keyCode||t.which)&&27!==(t.keyCode||t.which)||(27!==(t.keyCode||t.which)&&e.go_to($(this).val()),$(this).hide(),$(this).val(""),e.location_span.show(),e.chrom_select.show()),t.stopPropagation()}).appendTo(this.nav_controls),this.location_span=$("<span/>").addClass("location").attr("title","Click to change location").tooltip({placement:"bottom"}).appendTo(this.nav_controls),this.location_span.click(function(){e.location_span.hide(),e.chrom_select.hide(),e.nav_input.val(e.chrom+":"+e.low+"-"+e.high),e.nav_input.css("display","inline-block"),e.nav_input.select(),e.nav_input.focus(),e.nav_input.autocomplete({source:function(t,i){var a=[],n=$.map(e.get_tracks(Z),function(e){return e.data_manager.search_features(t.term).success(function(t){a=a.concat(t)})});$.when.apply($,n).done(function(){i($.map(a,function(t){return{label:t[0],value:t[1]}}))})},minLength:2})}),void 0!==this.vis_id&&(this.hidden_input=$("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)),this.zo_link=$("<a/>").attr("id","zoom-out").attr("title","Zoom out").tooltip({placement:"bottom"}).click(function(){e.zoom_out()}).appendTo(this.nav_controls),this.zi_link=$("<a/>").attr("id","zoom-in").attr("title","Zoom in").tooltip({placement:"bottom"}).click(function(){e.zoom_in()}).appendTo(this.nav_controls),this.load_chroms_deferred=this.load_chroms({low:0}),this.chrom_select.bind("change",function(){e.change_chrom(e.chrom_select.val())}),this.browser_content_div.click(function(t){$(this).find("input").trigger("blur")}),this.browser_content_div.bind("dblclick",function(t){e.zoom_in(t.pageX,this.viewport_container)}),this.overview_box.bind("dragstart",function(t,e){this.current_x=e.offsetX}).bind("drag",function(t,i){var a=i.offsetX-this.current_x;this.current_x=i.offsetX;var n=Math.round(a/e.viewport_container.width()*(e.max_high-e.max_low));e.move_delta(-n)}),this.overview_close.click(function(){e.reset_overview()}),this.viewport_container.bind("draginit",function(t,i){if(t.clientX>e.viewport_container.width()-16)return!1}).bind("dragstart",function(t,i){i.original_low=e.low,i.current_height=t.clientY,i.current_x=i.offsetX}).bind("drag",function(t,i){var a=$(this),n=i.offsetX-i.current_x,o=a.scrollTop()-(t.clientY-i.current_height);a.scrollTop(o),i.current_height=t.clientY,i.current_x=i.offsetX;var s=Math.round(n/e.viewport_container.width()*(e.high-e.low));e.move_delta(s)}),this.top_labeltrack.bind("dragstart",function(t,i){return $("<div/>").addClass("zoom-area").css("height",e.browser_content_div.height()+e.top_labeltrack.height()+1).appendTo($(this))}).bind("drag",function(t,i){$(i.proxy).css({left:Math.min(t.pageX,i.startX)-e.container.offset().left,width:Math.abs(t.pageX-i.startX)});var a=Math.min(t.pageX,i.startX)-e.container.offset().left,n=Math.max(t.pageX,i.startX)-e.container.offset().left,o=e.high-e.low,s=e.viewport_container.width();e.update_location(Math.round(a/s*o)+e.low,Math.round(n/s*o)+e.low)}).bind("dragend",function(t,i){var a=Math.min(t.pageX,i.startX),n=Math.max(t.pageX,i.startX),o=e.high-e.low,s=e.viewport_container.width(),r=e.low;e.low=Math.round(a/s*o)+r,e.high=Math.round(n/s*o)+r,$(i.proxy).remove(),e.request_redraw()}),this.add_label_track(new J(this,{content_div:this.top_labeltrack})),$(window).bind("resize",function(){this.resize_timer&&clearTimeout(this.resize_timer),this.resize_timer=setTimeout(function(){e.resize_window()},500)}),$(document).bind("redraw",function(){e.redraw()}),this.reset(),$(window).trigger("resize")},get_base_color:function(t){return this.config.get_value(t.toLowerCase()+"_color")||this.config.get_value("n_color")}});M(G.prototype,V.prototype,{changed:function(){this.has_changes=!0},update_intro_div:function(){this.intro_div.toggle(0===this.drawables.length)},trigger_navigate:function(t,e,i,a){if(this.timer&&clearTimeout(this.timer),a){var n=this;this.timer=setTimeout(function(){n.trigger("navigate",t+":"+e+"-"+i)},500)}else view.trigger("navigate",t+":"+e+"-"+i)},update_location:function(t,e){this.location_span.text(m.default.commatize(t)+" - "+m.default.commatize(e)),this.nav_input.val(this.chrom+":"+m.default.commatize(t)+"-"+m.default.commatize(e));var i=this.chrom_select.val();""!==i&&this.trigger_navigate(i,this.low,this.high,!0)},load_chroms:function(t){t.num=100;var e=this,i=$.Deferred();return $.ajax({url:Galaxy.root+"api/genomes/"+this.dbkey,data:t,dataType:"json",success:function(t){if(0!==t.chrom_info.length){if(t.reference){var a=new I(e);e.add_label_track(a),e.reference_track=a}e.chrom_data=t.chrom_info,e.chrom_select.html(""),e.chrom_select.append($('<option value="">Select Chrom/Contig</option>'));for(var n=0,o=e.chrom_data.length;n<o;n++){var s=e.chrom_data[n].chrom,r=$("<option>");r.text(s),r.val(s),e.chrom_select.append(r)}t.prev_chroms&&e.chrom_select.append($('<option value="previous">Previous 100</option>')),t.next_chroms&&e.chrom_select.append($('<option value="next">Next 100</option>')),e.chrom_start_index=t.start_index,i.resolve(t.chrom_info)}},error:function(){alert("Could not load chroms for this dbkey: "+e.dbkey)}}),i},change_chrom:function(t,e,i){var a=this;if(a.chrom_data){if(t&&"None"!==t)if("previous"!==t)if("next"!==t){var n=$.grep(a.chrom_data,function(e,i){return e.chrom===t})[0];if(void 0!==n){if(t!==a.chrom){a.chrom=t,a.chrom_select.val(a.chrom),a.max_high=n.len-1,a.reset();for(var o=0,s=a.drawables.length;o<s;o++){var r=a.drawables[o];r.init&&r.init()}a.reference_track&&a.reference_track.init()}void 0===e&&void 0===i?(a.low=0,a.high=a.max_high):(a.low=void 0!==e?Math.max(e,0):0,void 0===i?(a.low=Math.max(a.low-15,0),a.high=a.low+30):a.high=Math.min(i,a.max_high)),a.request_redraw()}else a.load_chroms({chrom:t},function(){a.change_chrom(t,e,i)})}else a.load_chroms({low:this.chrom_start_index+100});else a.load_chroms({low:this.chrom_start_index-100})}else a.load_chroms_deferred.then(function(){a.change_chrom(t,e,i)})},go_to:function(t){var e=(t=(t=t.replace(/,/g,"")).replace(/:|\-/g," ")).split(/\s+/),i=e[0],a=e[1]?parseInt(e[1],10):void 0,n=e[2]?parseInt(e[2],10):void 0;this.change_chrom(i,a,n)},move_fraction:function(t){var e=this,i=e.high-e.low;this.move_delta(t*i)},move_delta:function(t){var e=this,i=e.high-e.low;e.low-t<e.max_low?(e.low=e.max_low,e.high=e.max_low+i):e.high-t>e.max_high?(e.high=e.max_high,e.low=e.max_high-i):(e.high-=t,e.low-=t),e.request_redraw({data_fetch:!1}),this.redraw_on_move_fn&&clearTimeout(this.redraw_on_move_fn),this.redraw_on_move_fn=setTimeout(function(){e.request_redraw()},200);var a=e.chrom_select.val();this.trigger_navigate(a,e.low,e.high,!0)},add_drawable:function(t){V.prototype.add_drawable.call(this,t),t.init(),this.changed(),this.update_intro_div();var e=this;t.config.on("change",function(){e.changed()})},add_label_track:function(t){t.view=this,t.init(),this.label_tracks.push(t)},remove_drawable:function(t,e){if(V.prototype.remove_drawable.call(this,t),e){var i=this;t.container_div.hide(0,function(){$(this).remove(),i.update_intro_div()})}},reset:function(){this.low=this.max_low,this.high=this.max_high,this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(t,e){var i=this,a=e?[e]:i.drawables;v.each(a,function(e){var a=v.find(i.tracks_to_be_redrawn,function(t){return t[0]===e});a?a[1]=t:i.tracks_to_be_redrawn.push([e,t])}),this.requested_redraw||(requestAnimationFrame(function(){i._redraw()}),this.requested_redraw=!0)},_redraw:function(){this.requested_redraw=!1;var t=this.low,e=this.high;t<this.max_low&&(t=this.max_low),e>this.max_high&&(e=this.max_high);var i=this.high-this.low;0!==this.high&&i<this.min_separation&&(e=t+this.min_separation),this.low=Math.floor(t),this.high=Math.ceil(e),this.update_location(this.low,this.high),this.resolution_px_b=this.viewport_container.width()/(this.high-this.low);var a=this.low/(this.max_high-this.max_low)*this.overview_viewport.width()||0,n=(this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width()||0;this.overview_box.css({left:a,width:Math.max(13,n)}).show(),n<13&&this.overview_box.css("left",a-(13-n)/2),this.overview_highlight&&this.overview_highlight.css({left:a,width:n}),v.each(this.tracks_to_be_redrawn,function(t){var e=t[0],i=t[1];e&&e._draw(i)}),this.tracks_to_be_redrawn=[],v.each(this.label_tracks,function(t){t._draw()})},zoom_in:function(t,e){if(!(0===this.max_high||this.high-this.low<=this.min_separation)){var i=this.high-this.low,a=i/2+this.low,n=i/this.zoom_factor/2;t&&(a=t/this.viewport_container.width()*(this.high-this.low)+this.low),this.low=Math.round(a-n),this.high=Math.round(a+n),this.changed(),this.request_redraw()}},zoom_out:function(){if(0!==this.max_high){var t=this.high-this.low,e=t/2+this.low,i=t*this.zoom_factor/2;this.low=Math.round(e-i),this.high=Math.round(e+i),this.changed(),this.request_redraw()}},resize_viewport:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height())},resize_window:function(){this.resize_viewport(),this.request_redraw()},set_overview:function(t){if(this.overview_drawable){if(this.overview_drawable.dataset.id===t.dataset.id)return;this.overview_viewport.find(".track").remove()}var e=t.copy({content_div:this.overview_viewport}),i=this;e.header_div.hide(),e.is_overview=!0,i.overview_drawable=e,this.overview_drawable.postdraw_actions=function(){i.overview_highlight.show().height(i.overview_drawable.content_div.height()),i.overview_viewport.height(i.overview_drawable.content_div.height()+i.overview_box.outerHeight()),i.overview_close.show(),i.resize_window()},i.overview_drawable.request_draw(),this.changed()},reset_overview:function(){$(".tooltip").remove(),this.overview_viewport.find(".track-tile").remove(),this.overview_viewport.height(this.default_overview_height),this.overview_box.height(this.default_overview_height),this.overview_close.hide(),this.overview_highlight.hide(),view.resize_window(),view.overview_drawable=null}});var N=x.default.Tool.extend({defaults:{track:null},initialize:function(t){x.default.Tool.prototype.initialize.call(this,t);var e=!0;void 0!==t.tool_state&&void 0!==t.tool_state.hidden&&(e=t.tool_state.hidden),this.set("hidden",e),this.remove_inputs(["data","hidden_data","conditional"])},state_dict:function(t){return v.extend(this.get_inputs_dict(),{hidden:!this.is_visible()})}}),X=Backbone.View.extend({events:{"change :input":"update_value"},render:function(){var t=this.$el.addClass("param-row"),e=this.model;$("<div>").addClass("param-label").text(e.get("label")).appendTo(t);$("<div/>").addClass("param-input").html(e.get("html")).appendTo(t).find(":input").val(e.get("value")),$("<div style='clear: both;'/>").appendTo(t)},update_value:function(t){this.model.set_value($(t.target).val())}}),H=Backbone.View.extend({initialize:function(t){this.model.on("change:hidden",this.set_visible,this)},render:function(){var t=this,e=this.model,i=this.$el.addClass("dynamic-tool").hide();i.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).keydown(function(t){t.stopPropagation()});$("<div class='tool-name'>").appendTo(i).text(e.get("name"));e.get("inputs").each(function(t){var e=new X({model:t});e.render(),i.append(e.$el)}),i.find("input").click(function(){$(this).select()});var a=$("<div>").addClass("param-row").appendTo(i),n=$("<input type='submit'>").attr("value","Run on complete dataset").appendTo(a);$("<input type='submit'>").attr("value","Run on visible region").appendTo(a).click(function(){t.run_on_region()}),n.click(function(){t.run_on_dataset()}),e.is_visible()&&this.$el.show()},set_visible:function(){this.$el.toggle(this.model.is_visible())},update_params:function(){for(var t=0;t<this.params.length;t++)this.params[t].update_value()},run_on_dataset:function(){var t=this.model;this.run({target_dataset_id:this.model.get("track").dataset.id,action:"rerun",tool_id:t.id},null,function(e){Galaxy.modal.show({title:t.get("name")+" is Running",body:t.get("name")+" is running on the complete dataset. Tool outputs are in dataset's history.",buttons:{Close:function(){Galaxy.modal.hide()}}})})},run_on_region:function(){var t,e=this.model.get("track"),i=this.model,a=new p.default.GenomeRegion({chrom:e.view.chrom,start:e.view.low,end:e.view.high}),n={target_dataset_id:e.dataset.id,action:"rerun",tool_id:i.id,regions:[a.toJSON()]},o=e,s=i.get("name")+o.tool_region_and_parameters_str(a);if(o.container===view){var r=new j(view,view,{name:e.config.get_value("name")}),l=o.container.replace_drawable(o,r,!1);r.container_div.insertBefore(o.view.content_div.children()[l]),r.add_drawable(o),o.container_div.appendTo(r.content_div),t=r}else t=o.container;var h=new o.constructor(view,t,{name:s,hda_ldda:"hda"});h.init_for_tool_data(),h.change_mode(o.mode),h.set_filters_manager(o.filters_manager.copy(h)),h.update_icons(),t.add_drawable(h),h.tiles_div.text("Starting job."),this.run(n,h,function(t){h.set_dataset(new k.default.Dataset(t)),h.tiles_div.text("Running job."),h.init()})},run:function(t,e,i){t.inputs=this.model.get_inputs_dict();var a=new m.default.ServerStateDeferred({ajax_settings:{url:Galaxy.root+"api/tools",data:JSON.stringify(t),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});$.when(a.go()).then(function(t){"no converter"===t?(e.container_div.addClass("error"),e.content_div.text(A)):t.error?(e.container_div.addClass("error"),e.content_div.text("Tool cannot be rerun: "+t.message)):i(t)})}}),P=function(t,e){b.default.Scaler.call(this,e),this.filter=t};P.prototype.gen_val=function(t){return this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high?this.default_val:(parseFloat(t[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low)};var O=function(t,e,i,a,n){this.track=t,this.region=e,this.low=e.get("start"),this.high=e.get("end"),this.w_scale=i,this.canvas=a,this.html_elt=$("<div class='track-tile'/>").append(a),this.data=n,this.stale=!1};O.prototype.predisplay_actions=function(){};var R=function(t,e,i,a,n){O.call(this,t,e,i,a,n)};R.prototype.predisplay_actions=function(){};var L=function(t,e,i,a,n,o,s,r,l,h,d){O.call(this,t,e,i,a,n),this.mode=o,this.all_slotted=r,this.feature_mapper=l,this.has_icons=!1,this.incomplete_features=h,this.other_tiles_features_drawn={},this.seq_data=d};M(L.prototype,O.prototype),L.prototype.predisplay_actions=function(){};var Y=function(t,e,i){M(i,{drag_handle_class:"draghandle"}),D.call(this,t,e,i),this.dataset=null,i.dataset&&(this.dataset=i.dataset instanceof Backbone.Model?i.dataset:new k.default.Dataset(i.dataset)),this.dataset_check_type="converted_datasets_state",this.data_url_extra_params={},this.data_query_wait="data_query_wait"in i?i.data_query_wait:5e3,this.data_manager="data_manager"in i?i.data_manager:new p.default.GenomeDataManager({dataset:this.dataset,genome:new p.default.Genome({key:t.dbkey,chroms_info:{chrom_info:t.chrom_data}}),data_mode_compatible:this.data_and_mode_compatible,can_subset:this.can_subset}),this.min_height_px=16,this.max_height_px=800,this.visible_height_px=this.config.get_value("height"),this.content_div=$("<div class='track-content'>").appendTo(this.container_div),this.container&&(this.container.content_div.append(this.container_div),"resize"in i&&!i.resize||this.add_resize_handle())};M(Y.prototype,D.prototype,{action_icons_def:[{name:"mode_icon",title:"Set display mode",css_class:"chevron-expand",on_click_fn:function(){}},D.prototype.action_icons_def[0],{name:"overview_icon",title:"Set as overview",css_class:"application-dock-270",on_click_fn:function(t){t.view.set_overview(t)}},D.prototype.action_icons_def[1],{name:"filters_icon",title:"Filters",css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?t.filters_manager.clear_filters():t.filters_manager.init_filters(),t.filters_manager.toggle()}},{name:"tools_icon",title:"Tool",css_class:"hammer",on_click_fn:function(t){t.tool.toggle(),t.tool.is_visible()?t.set_name(t.config.get_value("name")+t.tool_region_and_parameters_str()):t.revert_name(),$(".tooltip").remove()}},{name:"param_space_viz_icon",title:"Tool parameter space visualization",css_class:"arrow-split",on_click_fn:function(t){var e="<strong>Tool</strong>:"+t.tool.get("name")+"<br/><strong>Dataset</strong>:"+t.config.get_value("name")+'<br/><strong>Region(s)</strong>: <select name="regions"><option value="cur">current viewing area</option><option value="bookmarks">bookmarks</option><option value="both">current viewing area and bookmarks</option></select>',i=function(){Galaxy.modal.hide(),$(window).unbind("keypress.check_enter_esc")},a=function(){var e,i=$('select[name="regions"] option:selected').val(),a=new p.default.GenomeRegion({chrom:view.chrom,start:view.low,end:view.high}),n=v.map($(".bookmark"),function(t){return new p.default.GenomeRegion({from_str:$(t).children(".position").text()})});e="cur"===i?[a]:"bookmarks"===i?n:[a].concat(n),Galaxy.modal.hide(),window.location.href=Galaxy.root+"visualization/sweepster?"+$.param({dataset_id:t.dataset.id,hda_ldda:t.dataset.get("hda_ldda"),regions:JSON.stringify(new Backbone.Collection(e).toJSON())})};Galaxy.modal.show({title:"Visualize tool parameter space and output from different parameter settings?",body:e,buttons:{No:i,Yes:a}})}},D.prototype.action_icons_def[2]],can_draw:function(){return this.dataset&&D.prototype.can_draw.call(this)},build_container_div:function(){return $("<div/>").addClass("track").attr("id","track_"+this.id)},set_dataset:function(t){this.dataset=t,this.data_manager.set("dataset",t)},on_resize:function(){this.request_draw({clear_tile_cache:!0})},add_resize_handle:function(){var t=this,e=!1,i=!1,a=$("<div class='track-resize'>");$(t.container_div).hover(function(){t.config.get_value("content_visible")&&(e=!0,a.show())},function(){e=!1,i||a.hide()}),a.hide().bind("dragstart",function(e,a){i=!0,a.original_height=$(t.content_div).height()}).bind("drag",function(e,i){var a=Math.min(Math.max(i.original_height+i.deltaY,t.min_height_px),t.max_height_px);$(t.tiles_div).css("height",a),t.visible_height_px=t.max_height_px===a?0:a,t.on_resize()}).bind("dragend",function(n,o){t.tile_cache.clear(),i=!1,e||a.hide(),t.config.set_value("height",t.visible_height_px),t.changed()}).appendTo(t.container_div)},hide_contents:function(){this.tiles_div.hide(),this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.tiles_div.show(),this.container_div.find(".yaxislabel, .track-resize").show(),this.request_draw()},get_type:function(){return this instanceof J?"LabelTrack":this instanceof I?"ReferenceTrack":this instanceof W?"LineTrack":this instanceof Q?"ReadTrack":this instanceof K?"VariantTrack":this instanceof E?"CompositeTrack":this instanceof Z?"FeatureTrack":""},show_message:function(t){return this.tiles_div.remove(),$("<span/>").addClass("message").html(t).appendTo(this.content_div)},init:function(t){var e=this;if(e.enabled=!1,e.tile_cache.clear(),e.data_manager.clear(),e.content_div.children().remove(),e.container_div.removeClass("nodata error pending"),e.tiles_div=$("<div/>").addClass("tiles").appendTo(e.content_div),e.dataset.id){var i=$.Deferred(),a={hda_ldda:e.dataset.get("hda_ldda"),data_type:this.dataset_check_type,chrom:e.view.chrom,retry:t};return $.getJSON(this.dataset.url(),a,function(t){if(t&&"error"!==t&&"error"!==t.kind)"no converter"===t?(e.container_div.addClass("error"),e.show_message(A)):"no data"===t||void 0!==t.data&&(null===t.data||0===t.data.length)?(e.container_div.addClass("nodata"),e.show_message("No data for this chrom/contig.")):"pending"===t?(e.container_div.addClass("pending"),e.show_message("Preparing data. This can take a while for a large dataset. If the visualization is saved and closed, preparation will continue in the background."),setTimeout(function(){e.init()},e.data_query_wait)):"data"!==t&&"data"!==t.status||(t.valid_chroms&&(e.valid_chroms=t.valid_chroms,e.update_icons()),e.tiles_div.text("Ready for display"),e.view.chrom?(e.tiles_div.text(""),e.tiles_div.css("height",e.visible_height_px+"px"),e.enabled=!0,$.when.apply($,e.predraw_init()).done(function(){i.resolve(),e.container_div.removeClass("nodata error pending"),e.request_draw()})):i.resolve());else{e.container_div.addClass("error");var a=e.show_message("Cannot display dataset due to an error. ");t.message&&(a.append($("<a href='javascript:void(0);'></a>").text("View error").click(function(){Galaxy.modal.show({title:"Trackster Error",body:"<pre>"+t.message+"</pre>",buttons:{Close:function(){Galaxy.modal.hide()}}})})),a.append($("<span/>").text(" ")),a.append($("<a href='javascript:void(0);'></a>").text("Try again").click(function(){e.init(!0)})))}}),this.update_icons(),i}},predraw_init:function(){var t=this;return $.getJSON(t.dataset.url(),{data_type:"data",stats:!0,chrom:t.view.chrom,low:0,high:t.view.max_high,hda_ldda:t.dataset.get("hda_ldda")},function(e){var i=e.data;if(i&&void 0!==i.min&&void 0!==i.max){var a=i.min,n=i.max;a=Math.floor(Math.min(0,Math.max(a,i.mean-2*i.sd))),n=Math.ceil(Math.max(0,Math.min(n,i.mean+2*i.sd))),t.config.set_default_value("min_value",a),t.config.set_default_value("max_value",n),t.config.set_value("min_value",a),t.config.set_value("max_value",n)}})},get_drawables:function(){return this}});var B=function(t,e,i){Y.call(this,t,e,i);var a=this;if(S(a.container_div,a.drag_handle_class,".group",a),this.filters_manager=new y.default.FiltersManager(this,"filters"in i?i.filters:null),this.data_manager.set("filters_manager",this.filters_manager),this.filters_available=!1,this.tool=i.tool?new N(v.extend(i.tool,{track:this,tool_state:i.tool_state})):null,this.tile_cache=new p.default.Cache(10),this.left_offset=0,this.header_div&&(this.set_filters_manager(this.filters_manager),this.tool)){var n=new H({model:this.tool});n.render(),this.dynamic_tool_div=n.$el,this.header_div.after(this.dynamic_tool_div)}this.tiles_div=$("<div/>").addClass("tiles").appendTo(this.content_div),this.config.get_value("content_visible")||this.tiles_div.hide(),this.overlay_div=$("<div/>").addClass("overlay").appendTo(this.content_div),i.mode&&this.change_mode(i.mode)};M(B.prototype,D.prototype,Y.prototype,{action_icons_def:Y.prototype.action_icons_def.concat([{name:"show_more_rows_icon",title:"To minimize track height, not all feature rows are displayed. Click to display more rows.",css_class:"exclamation",on_click_fn:function(t){$(".tooltip").remove(),t.slotters[t.view.resolution_px_b].max_rows*=2,t.request_draw({clear_tile_cache:!0})},hide:!0}]),copy:function(t){var e=this.to_dict();M(e,{data_manager:this.data_manager});var i=new this.constructor(this.view,t,e);return i.change_mode(this.mode),i.enabled=this.enabled,i},set_filters_manager:function(t){this.filters_manager=t,this.header_div.after(this.filters_manager.parent_div)},to_dict:function(){return{track_type:this.get_type(),dataset:{id:this.dataset.id,hda_ldda:this.dataset.get("hda_ldda")},prefs:this.config.to_key_value_dict(),mode:this.mode,filters:this.filters_manager.to_dict(),tool_state:this.tool?this.tool.state_dict():{}}},set_min_max:function(){var t=this;return $.getJSON(t.dataset.url(),{data_type:"data",stats:!0,chrom:t.view.chrom,low:0,high:t.view.max_high,hda_ldda:t.dataset.get("hda_ldda")},function(e){var i=e.data;if(isNaN(parseFloat(t.config.get_value("min_value")))||isNaN(parseFloat(t.config.get_value("max_value")))){var a=i.min,n=i.max;a=Math.floor(Math.min(0,Math.max(a,i.mean-2*i.sd))),n=Math.ceil(Math.max(0,Math.min(n,i.mean+2*i.sd))),t.config.set_value("min_value",a),t.config.set_value("max_value",n)}})},change_mode:function(t){var e=this;return e.mode=t,e.config.set_value("mode",t),"Auto"===t&&this.data_manager.clear(),e.request_draw({clear_tile_cache:!0}),this.action_icons.mode_icon.attr("title","Set display mode (now: "+e.mode+")"),e},update_icons:function(){var t=this;t.action_icons.filters_icon.toggle(t.filters_available),t.action_icons.tools_icon.toggle(null!==t.tool),t.action_icons.param_space_viz_icon.toggle(null!==t.tool)},_gen_tile_cache_key:function(t,e){return t+"_"+e},request_draw:function(t){t&&t.clear_tile_cache&&this.tile_cache.clear(),this.view.request_redraw(t,this)},before_draw:function(){this.max_height_px=0},_draw:function(t){if(this.can_draw()){var e=t&&t.clear_after,i=this.view.low,a=this.view.high,n=this.view.container.width(),o=this.view.resolution_px_b,s=1/o;this.is_overview&&(i=this.view.max_low,a=this.view.max_high,s=1/(o=n/(view.max_high-view.max_low))),this.before_draw(),this.tiles_div.children().addClass("remove");for(var r,l,h=Math.floor(400*s),d=Math.floor(i/h),_=[],c=[];d*h<a;)r=new p.default.GenomeRegion({chrom:this.view.chrom,start:d*h,end:Math.min((d+1)*h,this.view.max_high)}),l=this.draw_helper(r,o,t),_.push(l),$.when(l).then(function(t){c.push(t)}),d+=1;e||this.tiles_div.children(".remove").removeClass("remove").remove();var u=this;$.when.apply($,_).then(function(){u.tiles_div.children(".remove").remove(),0!==(c=v.filter(c,function(t){return null!==t})).length&&u.postdraw_actions(c,n,o,e)})}},_add_yaxis_label:function(t,e){var i=this,a="max"===t?"top":"bottom",n="max"===t?"max":"min",o="max"===t?"max_value":"min_value",s=this.container_div.find(".yaxislabel."+a),r=u(i.config.get_value(o),1);e=e||function(){i.request_draw({clear_tile_cache:!0})},0!==s.length?s.text(r):(s=$("<div/>").text(r).make_text_editable({num_cols:12,on_finish:function(t){$(".tooltip").remove(),i.config.set_value(o,u(t,1)),e()},help_text:"Set "+n+" value"}).addClass("yaxislabel "+a).css("color",this.config.get_value("label_color")),this.container_div.prepend(s))},postdraw_actions:function(t,e,i,a){if(v.filter(t,function(t){return t instanceof R}).length>0){this.max_height_px=0;var n=this;v.each(t,function(t){t instanceof R||(t.html_elt.remove(),n.draw_helper(t.region,i,{force:!0,mode:"Coverage"}))}),n._add_yaxis_label("max")}else this.container_div.find(".yaxislabel").remove(),v.find(t,function(t){return t.has_icons})&&v.each(t,function(t){t.has_icons||t.html_elt.css("padding-top",20)})},get_mode:function(t){return this.mode},update_auto_mode:function(t){},_get_drawables:function(){return[this]},draw_helper:function(t,e,i){i||(i={});var a=i.force,n=i.mode||this.mode,o=1/e,s=this,r=this._get_drawables(),l=this._gen_tile_cache_key(e,t),h=a?void 0:s.tile_cache.get_elt(l);if(h)return function(t){return t&&"track"in t}(h)&&s.show_tile(h,e),h;if(!1===i.data_fetch)return null;var d=function(){var e=v.find(F,function(t){return t===n})?"Coverage":n,i=v.map(r,function(i){return i.data_manager.get_data(t,e,o,s.data_url_extra_params)});return view.reference_track&&i.push(view.reference_track.data_manager.get_data(t,n,o,view.reference_track.data_url_extra_params)),i},_=$.Deferred();return s.tile_cache.set_elt(l,_),$.when.apply($,d()).then(function(){var a,n=d(),o=n;if(v.find(n,function(t){return m.default.is_deferred(t)}))return s.tile_cache.set_elt(l,void 0),void $.when(s.draw_helper(t,e,i)).then(function(t){_.resolve(t)});view.reference_track&&(a=view.reference_track.data_manager.subset_entry(n.pop(),t));var h=[],c=[];v.each(r,function(t,i){var a=t.mode,n=o[i];"Auto"===a&&(a=t.get_mode(n),t.update_auto_mode(a)),h.push(a),c.push(t.get_canvas_height(n,a,e,w))});var u,f=s.view.canvas_manager.new_canvas(),p=t.get("start"),g=t.get("end"),w=Math.ceil((g-p)*e)+s.left_offset,b=v.max(c);f.width=w,f.height=i.height||b;var y=f.getContext("2d");y.translate(s.left_offset,0),r.length>1&&(y.globalAlpha=.5,y.globalCompositeOperation="source-over"),v.each(r,function(i,n){u=i.draw_tile(o[n],y,h[n],t,e,a)}),void 0!==u&&(s.tile_cache.set_elt(l,u),s.show_tile(u,e)),_.resolve(u)}),_},get_canvas_height:function(t,e,i,a){return this.visible_height_px},_draw_line_track_tile:function(t,e,i,a,n){-1!==[void 0,null].indexOf(this.config.get_value("min_value"))&&this.config.set_value("min_value",0),-1!==[void 0,null,0].indexOf(this.config.get_value("max_value"))&&this.config.set_value("max_value",v.max(v.map(t.data,function(t){return t[1]}))||0);var o=e.canvas;return new b.default.LinePainter(t.data,a.get("start"),a.get("end"),this.config.to_key_value_dict(),i).draw(e,o.width,o.height,n),new R(this,a,n,o,t.data)},draw_tile:function(t,e,i,a,n,o){},show_tile:function(t,e){var i=t.html_elt;t.predisplay_actions();var a=Math.round((t.low-(this.is_overview?this.view.max_low:this.view.low))*e);this.left_offset&&(a-=this.left_offset),i.css("left",a),i.hasClass("remove")?i.removeClass("remove"):this.tiles_div.append(i),i.css("height","auto"),this.max_height_px=Math.max(this.max_height_px,i.height()-2),i.parent().children().css("height",this.max_height_px+"px");var n=this.max_height_px;0!==this.visible_height_px&&(n=Math.min(this.max_height_px,this.visible_height_px)),this.tiles_div.css("height",n+"px")},tool_region_and_parameters_str:function(t){var e=this;return" - region=["+(void 0!==t?t.toString():"all")+"], parameters=["+v.values(e.tool.get_inputs_dict()).join(", ")+"]"},data_and_mode_compatible:function(t,e){return"Auto"===e||("Coverage"===e?"bigwig"===t.dataset_type:"bigwig"!==t.dataset_type&&"no_detail"!==t.extra_info)},can_subset:function(t){return!t.message&&"no_detail"!==t.extra_info&&("bigwig"!==t.dataset_type||t.data[1][0]-t.data[0][0]==1)},init_for_tool_data:function(){this.data_manager.set("data_type","raw_data"),this.data_query_wait=1e3,this.dataset_check_type="state"}});var J=function(t,e){Y.call(this,t,e,{resize:!1,header:!1}),this.container_div.addClass("label-track")};M(J.prototype,Y.prototype,{init:function(){this.enabled=!0},predraw_init:function(){},_draw:function(t){for(var e=this.view,i=e.high-e.low,a=Math.floor(Math.pow(10,Math.floor(Math.log(i)/Math.log(10)))),n=Math.floor(e.low/a)*a,o=this.view.container.width(),s=$("<div/>").addClass("label-container");n<e.high;){var r=Math.floor((n-e.low)/i*o);s.append($("<div/>").addClass("pos-label").text(m.default.commatize(n)).css({left:r})),n+=a}this.content_div.children(":first").remove(),this.content_div.append(s)}});var E=function(t,e,i){if(B.call(this,t,e,i),this.drawables=[],"drawables"in i){for(var a,n=0;n<i.drawables.length;n++)a=i.drawables[n],this.drawables[n]=et(a,t,null),a.left_offset>this.left_offset&&(this.left_offset=a.left_offset);this.enabled=!0}v.each(this.drawables,function(t){(t instanceof Z||t instanceof Q)&&t.change_mode("Coverage")}),this.update_icons(),this.obj_type="CompositeTrack"};M(E.prototype,B.prototype,{display_modes:F,build_config_params:function(){return v.union(D.prototype.config_params,[{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},action_icons_def:[{name:"composite_icon",title:"Show individual tracks",css_class:"layers-stack",on_click_fn:function(t){$(".tooltip").remove(),t.show_group()}}].concat(B.prototype.action_icons_def),to_dict:V.prototype.to_dict,add_drawable:V.prototype.add_drawable,unpack_drawables:V.prototype.unpack_drawables,config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},on_resize:function(){var t=this.visible_height_px;v.each(this.drawables,function(e){e.visible_height_px=t}),Y.prototype.on_resize.call(this)},change_mode:function(t){B.prototype.change_mode.call(this,t);for(var e=0;e<this.drawables.length;e++)this.drawables[e].change_mode(t)},init:function(){for(var t=[],e=0;e<this.drawables.length;e++)t.push(this.drawables[e].init());var i=this;$.when.apply($,t).then(function(){i.enabled=!0,i.request_draw()})},update_icons:function(){this.action_icons.filters_icon.hide(),this.action_icons.tools_icon.hide(),this.action_icons.param_space_viz_icon.hide()},can_draw:D.prototype.can_draw,_get_drawables:function(){return this.drawables},show_group:function(){for(var t,e=new j(this.view,this.container,{name:this.config.get_value("name")}),i=0;i<this.drawables.length;i++)(t=this.drawables[i]).update_icons(),e.add_drawable(t),t.container=e,e.content_div.append(t.container_div);this.container.replace_drawable(this,e,!0);e.request_draw({clear_tile_cache:!0})},before_draw:function(){var t=v.min(v.map(this.drawables,function(t){return t.config.get_value("min_value")})),e=v.max(v.map(this.drawables,function(t){return t.config.get_value("max_value")}));this.config.set_value("min_value",t),this.config.set_value("max_value",e),v.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)})},update_all_min_max:function(){var t=this.config.get_value("min_value"),e=this.config.get_value("max_value");v.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)}),this.request_draw({clear_tile_cache:!0})},postdraw_actions:function(t,e,i,a){var n,o=-1;for(n=0;n<t.length;n++){var s=t[n].html_elt.find("canvas").height();s>o&&(o=s)}for(n=0;n<t.length;n++){var r=t[n];r.html_elt.find("canvas").height()!==o&&(this.draw_helper(r.region,i,{force:!0,height:o}),r.html_elt.remove())}var l=this,h=function(){l.update_all_min_max()};this._add_yaxis_label("min",h),this._add_yaxis_label("max",h)}});var I=function(t){B.call(this,t,{content_div:t.top_labeltrack},{resize:!1,header:!1}),this.left_offset=t.canvas_manager.char_width_px,this.container_div.addClass("reference-track"),this.data_url=Galaxy.root+"api/genomes/"+this.view.dbkey,this.data_url_extra_params={reference:!0},this.data_manager=new p.default.GenomeReferenceDataManager({data_url:this.data_url,can_subset:this.can_subset}),this.hide_contents()};M(I.prototype,D.prototype,B.prototype,{build_config_params:function(){return v.union(D.prototype.config_params,[{key:"height",type:"int",default_value:13,hidden:!0}])},init:function(){this.data_manager.clear(),this.enabled=!0},predraw_init:function(){},can_draw:D.prototype.can_draw,draw_helper:function(t,e,i){var a,n=this.tiles_div.is(":visible"),o=null;return e>this.view.canvas_manager.char_width_px?(this.tiles_div.show(),a=!0,o=B.prototype.draw_helper.call(this,t,e,i)):(a=!1,this.tiles_div.hide()),n!==a&&this.view.resize_viewport(),o},can_subset:function(t){return!0},draw_tile:function(t,e,i,a,n){var o=this.data_manager.subset_entry(t,a),s=o.data,r=e.canvas;e.font=e.canvas.manager.default_font,e.textAlign="center";for(var l=0,h=s.length;l<h;l++)e.fillStyle=this.view.get_base_color(s[l]),e.fillText(s[l],Math.floor(l*n),10);return new O(this,a,n,r,o)}});var W=function(t,e,i){this.mode="Histogram",B.call(this,t,e,i),this.left_offset=30;var a=this;$.when(f(Galaxy.root+"datasets/"+this.dataset.id+"/display")).then(function(t){t&&(a.data_manager=new T.default.BBIDataManager({dataset:a.dataset}))})};M(W.prototype,D.prototype,B.prototype,{display_modes:F,build_config_params:function(){return v.union(D.prototype.config_params,[{key:"color",label:"Color",type:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},before_draw:function(){},draw_tile:function(t,e,i,a,n){return this._draw_line_track_tile(t,e,i,a,n)},can_subset:function(t){return t.data[1][0]-t.data[0][0]==1},postdraw_actions:function(t,e,i,a){this._add_yaxis_label("max"),this._add_yaxis_label("min")}});var U=function(t,e,i){this.mode="Heatmap",B.call(this,t,e,i)};M(U.prototype,D.prototype,B.prototype,{display_modes:["Heatmap"],build_config_params:function(){return v.union(D.prototype.config_params,[{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"min_value",label:"Min Value",type:"int",default_value:void 0},{key:"max_value",label:"Max Value",type:"int",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:500,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},predraw_init:function(){var t=this;return $.getJSON(t.dataset.url(),{data_type:"data",stats:!0,chrom:t.view.chrom,low:0,high:t.view.max_high,hda_ldda:t.dataset.get("hda_ldda")},function(t){t.data})},draw_tile:function(t,e,i,a,n){var o=e.canvas;return new b.default.DiagonalHeatmapPainter(t.data,a.get("start"),a.get("end"),this.config.to_key_value_dict(),i).draw(e,o.width,o.height,n),new O(this,a,n,o,t.data)}});var Z=function(t,e,i){B.call(this,t,e,i),this.container_div.addClass("feature-track"),this.summary_draw_height=30,this.slotters={},this.start_end_dct={},this.left_offset=200,this.set_painter_from_config()};M(Z.prototype,D.prototype,B.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return v.union(D.prototype.config_params,[{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0,help:"Show the number of items in each bin when drawing summary histogram"},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.set_painter_from_config(),this.request_draw({clear_tile_cache:!0})},set_painter_from_config:function(){"arcs"===this.config.get_value("connector_style")?this.painter=b.default.ArcLinkedFeaturePainter:this.painter=b.default.LinkedFeaturePainter},postdraw_actions:function(t,e,i,a){B.prototype.postdraw_actions.call(this,t,e,i,a);var n,o=this;if(0===v.filter(t,function(t){return t instanceof R}).length){var s={};v.each(v.pluck(t,"incomplete_features"),function(t){v.each(t,function(t){s[t[0]]=t})});var r=this;v.each(t,function(t){var e=v.omit(s,v.map(t.incomplete_features,function(t){return t[0]}));if(e=v.omit(e,v.keys(t.other_tiles_features_drawn)),0!==v.size(e)){var i={data:v.values(e)},a=r.view.canvas_manager.new_canvas(),n=a.getContext("2d");a.height=Math.max(t.canvas.height,r.get_canvas_height(i,t.mode,t.w_scale,100)),a.width=t.canvas.width,n.drawImage(t.canvas,0,0),n.translate(o.left_offset,0);var l=r.draw_tile(i,n,t.mode,t.region,t.w_scale,t.seq_data);$(t.canvas).replaceWith($(l.canvas)),t.canvas=a,v.extend(t.other_tiles_features_drawn,s)}})}if(o.filters_manager){var l,h=o.filters_manager.filters;for(l=0;l<h.length;l++)h[l].update_ui_elt();var d,_,c=!1;for(n=0;n<t.length;n++)if(t[n].data.length)for(d=t[n].data[0],l=0;l<h.length;l++)if((_=h[l]).applies_to(d)&&_.min!==_.max){c=!0;break}o.filters_available!==c&&(o.filters_available=c,o.filters_available||o.filters_manager.hide(),o.update_icons())}if(t[0]instanceof L){var u=!0;for(n=0;n<t.length;n++)if(!t[n].all_slotted){u=!1;break}this.action_icons.show_more_rows_icon.toggle(!u)}else this.action_icons.show_more_rows_icon.hide()},update_auto_mode:function(t){"Auto"===this.mode&&("no_detail"===t&&(t="feature spans"),this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+t+")"))},incremental_slots:function(t,e,i){var a=this.view.canvas_manager.dummy_context,n=this.slotters[t];return n&&n.mode===i||(n=new w.default.FeatureSlotter(t,i,100,function(t){return a.measureText(t)}),this.slotters[t]=n),n.slot_features(e)},get_mode:function(t){return"no_detail"===t.extra_info||this.is_overview?"no_detail":this.view.high-this.view.low>12e3?"Squish":"Pack"},get_canvas_height:function(t,e,i,a){if("Coverage"===e||"bigwig"===t.dataset_type)return this.summary_draw_height;var n=this.incremental_slots(i,t.data,e),o=new this.painter(null,null,null,this.config.to_key_value_dict(),e);return Math.max(this.min_height_px,o.get_required_height(n,a))},draw_tile:function(t,e,i,a,n,o,s){var r=this,l=e.canvas,h=a.get("start"),d=a.get("end"),_=this.left_offset;if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,i,a,n);var c=[],u=this.slotters[n].slots,f=!0;if(t.data)for(var v=this.filters_manager.filters,p=0,g=t.data.length;p<g;p++){for(var m,w=t.data[p],b=!1,y=0,k=v.length;y<k;y++)if((m=v[y]).update_attrs(w),!m.keep(w)){b=!0;break}b||(c.push(w),w[0]in u||(f=!1))}var x=this.filters_manager.alpha_filter?new P(this.filters_manager.alpha_filter):null,$=this.filters_manager.height_filter?new P(this.filters_manager.height_filter):null,C=new this.painter(c,h,d,this.config.to_key_value_dict(),i,x,$,o,function(t){return r.view.get_base_color(t)}),T=null;if(e.fillStyle=this.config.get_value("block_color"),e.font=e.canvas.manager.default_font,e.textAlign="right",t.data){var M=C.draw(e,l.width,l.height,n,u);T=M.feature_mapper,incomplete_features=M.incomplete_features,T.translation=-_}return s?void 0:new L(r,a,n,l,t.data,i,t.message,f,T,incomplete_features,o)}});var K=function(t,e,i){B.call(this,t,e,i),this.painter=b.default.VariantPainter,this.summary_draw_height=30,this.left_offset=30};M(K.prototype,D.prototype,B.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return v.union(D.prototype.config_params,[{key:"color",label:"Histogram color",type:"color"},{key:"show_sample_data",label:"Show sample data",type:"bool",default_value:!0},{key:"show_labels",label:"Show summary and sample labels",type:"bool",default_value:!0},{key:"summary_height",label:"Locus summary height",type:"float",default_value:20},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},draw_tile:function(t,e,i,a,n){if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,"Histogram",a,n);var o=this.view;return new this.painter(t.data,a.get("start"),a.get("end"),this.config.to_key_value_dict(),i,function(t){return o.get_base_color(t)}).draw(e,e.canvas.width,e.canvas.height,n),new O(this,a,n,e.canvas,t.data)},get_canvas_height:function(t,e,i,a){if("bigwig"===t.dataset_type)return this.summary_draw_height;var n=this.dataset.get_metadata("sample_names")?this.dataset.get_metadata("sample_names").length:0;return 0===n&&0!==t.data.length&&(n=null===(n=t.data[0][7].match(/,/g))?1:n.length+1),new this.painter(null,null,null,this.config.to_key_value_dict(),e).get_required_height(n)},predraw_init:function(){var t=[Y.prototype.predraw_init.call(this)];return this.dataset.get_metadata("sample_names")||t.push(this.dataset.fetch()),t},postdraw_actions:function(t,e,i,a){B.prototype.postdraw_actions.call(this,t,e,i,a);var n=v.filter(t,function(t){return t instanceof R}),o=this.dataset.get_metadata("sample_names");if(0===n.length&&this.config.get_value("show_labels")&&o&&o.length>1){var s;if(0===this.container_div.find(".yaxislabel.variant").length&&(s=this.config.get_value("summary_height")/2,this.tiles_div.prepend($("<div/>").text("Summary").addClass("yaxislabel variant top").css({"font-size":s+"px",top:(this.config.get_value("summary_height")-s)/2+"px"})),this.config.get_value("show_sample_data"))){var r=o.join("<br/>");this.tiles_div.prepend($("<div/>").html(r).addClass("yaxislabel variant top sample").css({top:this.config.get_value("summary_height")}))}s=("Squish"===this.mode?5:10)+"px",$(this.tiles_div).find(".sample").css({"font-size":s,"line-height":s}),$(this.tiles_div).find(".yaxislabel").css("color",this.config.get_value("label_color"))}else this.container_div.find(".yaxislabel.variant").remove()}});var Q=function(t,e,i){Z.call(this,t,e,i),this.painter=b.default.ReadPainter,this.update_icons()};M(Q.prototype,D.prototype,B.prototype,Z.prototype,{build_config_params:function(){return v.union(D.prototype.config_params,[{key:"block_color",label:"Histogram color",type:"color"},{key:"detail_block_color",label:"Sense strand block color",type:"color",default_value:"#AAAAAA"},{key:"reverse_strand_color",label:"Antisense strand block color",type:"color",default_value:"#DDDDDD"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:!1},{key:"show_differences",label:"Show differences only",type:"bool",default_value:!0},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})}});var tt={CompositeTrack:E,DrawableGroup:j,DiagonalHeatmapTrack:U,FeatureTrack:Z,LineTrack:W,ReadTrack:Q,VariantTrack:K,VcfTrack:K},et=function(t,e,i){if("copy"in t)return t.copy(i);var a=t.obj_type;return a||(a=t.track_type),new tt[a](e,i,t)};t.default={TracksterView:G,DrawableGroup:j,LineTrack:W,FeatureTrack:Z,DiagonalHeatmapTrack:U,ReadTrack:Q,VariantTrack:K,CompositeTrack:E,object_from_template:et}});
\ No newline at end of file
+define("viz/trackster/tracks",["exports","utils/localization","libs/underscore","viz/visualization","viz/viz_views","viz/trackster/util","viz/trackster/slotting","viz/trackster/painters","viz/trackster/filters","mvc/dataset/data","mvc/tool/tools","utils/config","viz/bbi-data-manager","ui/editable-text"],function(t,e,i,a,n,o,s,r,l,h,d,_,c){"use strict";function u(t){return t&&t.__esModule?t:{default:t}}function f(t,e){e||(e=0);var i=Math.pow(10,e);return Math.round(t*i)/i}function v(t){var e=$.Deferred();return $.ajax({type:"HEAD",url:t,beforeSend:function(t){t.setRequestHeader("Range","bytes=0-10")},success:function(t,i,a){e.resolve(206===a.status)}}),e}Object.defineProperty(t,"__esModule",{value:!0});var p=u(e),g=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(i),m=u(a),w=u(n),b=u(o),y=u(s),k=u(r),x=u(l),C=u(h),T=u(d),M=u(_),z=u(c),q=g.extend,S={},A=function(t,e){S[t.attr("id")]=e},F=function(t,e,i,a){i=".group",S[t.attr("id")]=a,t.bind("drag",{handle:"."+e,relative:!0},function(t,e){$(this);var a,n,o,s,r,l=$(this).parent(),h=l.children(".track,.group"),d=S[$(this).attr("id")];if(0!==(n=$(this).parents(i)).length){s=(o=n.position().top)+n.outerHeight();var _=S[n.attr("id")];if(e.offsetY<o)return $(this).insertBefore(n),_.remove_drawable(d),void _.container.add_drawable_before(d,_);if(e.offsetY>s)return $(this).insertAfter(n),_.remove_drawable(d),void _.container.add_drawable(d)}for(n=null,r=0;r<h.length;r++)if(a=$(h.get(r)),o=a.position().top,s=o+a.outerHeight(),a.is(i)&&this!==a.get(0)&&e.offsetY>=o&&e.offsetY<=s)return e.offsetY-o<s-e.offsetY?a.find(".content-div").prepend(this):a.find(".content-div").append(this),d.container&&d.container.remove_drawable(d),void S[a.attr("id")].add_drawable(d);for(r=0;r<h.length&&(a=$(h.get(r)),!(e.offsetY<a.position().top)||a.hasClass("reference-track")||a.hasClass("intro"));r++);r===h.length?this!==h.get(r-1)&&(l.append(this),S[l.attr("id")].move_drawable(d,r)):this!==h.get(r)&&($(this).insertBefore(h.get(r)),S[l.attr("id")].move_drawable(d,e.deltaY>0?r-1:r))}).bind("dragstart",function(){$(this).addClass("dragging")}).bind("dragend",function(){$(this).removeClass("dragging")})},D="A converter for this dataset is not installed. Please check your datatypes_conf.xml file.",V=["Histogram","Line","Filled","Intensity"],j=function t(e,i,a){if(t.id_counter||(t.id_counter=0),this.id=t.id_counter++,this.view=e,this.container=i,this.drag_handle_class=a.drag_handle_class,this.is_overview=!1,this.action_icons={},this.config=M.default.ConfigSettingCollection.from_models_and_saved_values(this.config_params,a.prefs),this.config.get_value("name")||this.config.set_value("name",a.name),this.config_onchange&&this.config.on("change",this.config_onchange,this),this.container_div=this.build_container_div(),this.header_div=null,!1!==a.header){var n=new w.default.TrackHeaderView({model:this,id:this.id});this.header_div=n.$el,this.container_div.append(this.header_div);var o=n.icons_div;this.action_icons=n.action_icons,this.container_div.hover(function(){o.show()},function(){o.hide()})}};j.prototype.action_icons_def=[{name:"toggle_icon",title:"Hide/show content",css_class:"toggle",on_click_fn:function(t){t.config.get_value("content_visible")?(t.action_icons.toggle_icon.addClass("toggle-expand").removeClass("toggle"),t.hide_contents(),t.config.set_value("content_visible",!1)):(t.action_icons.toggle_icon.addClass("toggle").removeClass("toggle-expand"),t.config.set_value("content_visible",!0),t.show_contents())}},{name:"settings_icon",title:(0,p.default)("Edit settings"),css_class:"gear",on_click_fn:function(t){new M.default.ConfigSettingCollectionView({collection:t.config}).render_in_modal("Configure Track")}},{name:"remove_icon",title:(0,p.default)("Remove"),css_class:"remove-icon",on_click_fn:function(t){$(".tooltip").remove(),t.remove()}}],q(j.prototype,{config_params:[{key:"name",label:"Name",type:"text",default_value:""},{key:"content_visible",type:"bool",default_value:!0,hidden:!0}],config_onchange:function(){},init:function(){},changed:function(){this.view.changed()},can_draw:function(){return!(!this.enabled||!this.config.get_value("content_visible"))},request_draw:function(){},_draw:function(t){},to_dict:function(){},set_name:function(t){this.old_name=this.config.get_value("name"),this.config.set_value("name",t)},revert_name:function(){this.old_name&&this.config.set_value("name",this.old_name)},remove:function(){this.changed(),this.container.remove_drawable(this);var t=this.view;this.container_div.hide(0,function(){$(this).remove(),t.update_intro_div()})},build_container_div:function(){},update_icons:function(){},hide_contents:function(){},show_contents:function(){},get_drawables:function(){}});var G=function(t,e,i){j.call(this,t,e,i),this.obj_type=i.obj_type,this.drawables=[]};q(G.prototype,j.prototype,{unpack_drawables:function(t){this.drawables=[];for(var e,i=0;i<t.length;i++)e=at(t[i],this.view,this),this.add_drawable(e)},init:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].init()},_draw:function(t){for(var e=0;e<this.drawables.length;e++)this.drawables[e]._draw(t)},to_dict:function(){for(var t=[],e=0;e<this.drawables.length;e++)t.push(this.drawables[e].to_dict());return{prefs:this.config.to_key_value_dict(),obj_type:this.obj_type,drawables:t}},add_drawable:function(t){this.drawables.push(t),t.container=this,this.changed()},add_drawable_before:function(t,e){this.changed();var i=this.drawables.indexOf(e);return-1!==i&&(this.drawables.splice(i,0,t),!0)},replace_drawable:function(t,e,i){var a=this.drawables.indexOf(t);return-1!==a&&(this.drawables[a]=e,i&&t.container_div.replaceWith(e.container_div),this.changed()),a},remove_drawable:function(t){var e=this.drawables.indexOf(t);return-1!==e&&(this.drawables.splice(e,1),t.container=null,this.changed(),!0)},move_drawable:function(t,e){var i=this.drawables.indexOf(t);return-1!==i&&(this.drawables.splice(i,1),this.drawables.splice(e,0,t),this.changed(),!0)},get_drawables:function(){return this.drawables},get_tracks:function(t){for(var e,i=this.drawables.slice(0),a=[];0!==i.length;)(e=i.shift())instanceof t?a.push(e):e.drawables&&(i=i.concat(e.drawables));return a}});var N=function(t,e,i){if(q(i,{obj_type:"DrawableGroup",drag_handle_class:"group-handle"}),G.call(this,t,e,i),this.content_div=$("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div),A(this.container_div,this),A(this.content_div,this),F(this.container_div,this.drag_handle_class,".group",this),this.filters_manager=new x.default.FiltersManager(this),this.header_div.after(this.filters_manager.parent_div),this.filters_manager.parent_div.after($("<div style='clear: both'/>")),this.saved_filters_managers=[],"drawables"in i&&this.unpack_drawables(i.drawables),"filters"in i){var a=this.filters_manager;this.filters_manager=new x.default.FiltersManager(this,i.filters),a.parent_div.replaceWith(this.filters_manager.parent_div),i.filters.visible&&this.setup_multitrack_filtering()}};q(N.prototype,j.prototype,G.prototype,{action_icons_def:[j.prototype.action_icons_def[0],j.prototype.action_icons_def[1],{name:"composite_icon",title:(0,p.default)("Show composite track"),css_class:"layers-stack",on_click_fn:function(t){$(".tooltip").remove(),t.show_composite_track()}},{name:"filters_icon",title:(0,p.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?(t.filters_manager.clear_filters(),t._restore_filter_managers()):(t.setup_multitrack_filtering(),t.request_draw({clear_tile_cache:!0})),t.filters_manager.toggle()}},j.prototype.action_icons_def[2]],build_container_div:function(){var t=$("<div/>").addClass("group").attr("id","group_"+this.id);return this.container&&this.container.content_div.append(t),t},hide_contents:function(){this.tiles_div.hide()},show_contents:function(){this.tiles_div.show(),this.request_draw()},update_icons:function(){var t=this.drawables.length;if(0===t)this.action_icons.composite_icon.hide(),this.action_icons.filters_icon.hide();else if(1===t)this.action_icons.composite_icon.toggle(this.drawables[0]instanceof W),this.action_icons.filters_icon.hide();else{var e,i,a,n=this.drawables[0].get_type(),o=0;for(e=0;e<t;e++){if((a=this.drawables[e]).get_type()!==n){can_composite=!1;break}a instanceof Q&&o++}if(this.drawables[0]instanceof Z?this.action_icons.composite_icon.show():(this.action_icons.composite_icon.hide(),$(".tooltip").remove()),o>1&&o===this.drawables.length){var s,r={};for(a=this.drawables[0],i=0;i<a.filters_manager.filters.length;i++)r[(s=a.filters_manager.filters[i]).name]=[s];for(e=1;e<this.drawables.length;e++)for(a=this.drawables[e],i=0;i<a.filters_manager.filters.length;i++)(s=a.filters_manager.filters[i]).name in r&&r[s.name].push(s);this.filters_manager.remove_all();var l,h;for(var d in r)(l=r[d]).length===o&&(h=new x.default.NumberFilter({name:l[0].name,index:l[0].index}),this.filters_manager.add_filter(h));this.action_icons.filters_icon.toggle(this.filters_manager.filters.length>0)}else this.action_icons.filters_icon.hide()}},_restore_filter_managers:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].filters_manager=this.saved_filters_managers[t];this.saved_filters_managers=[]},setup_multitrack_filtering:function(){if(this.filters_manager.filters.length>0){this.saved_filters_managers=[];for(var t=0;t<this.drawables.length;t++){var e=this.drawables[t];this.saved_filters_managers.push(e.filters_manager),e.filters_manager=this.filters_manager}}this.filters_manager.init_filters()},show_composite_track:function(){var t=new W(this.view,this.view,{name:this.config.get_value("name"),drawables:this.drawables});this.container.replace_drawable(this,t,!0);t.request_draw()},add_drawable:function(t){G.prototype.add_drawable.call(this,t),this.update_icons()},remove_drawable:function(t){G.prototype.remove_drawable.call(this,t),this.update_icons()},to_dict:function(){this.filters_manager.visible()&&this._restore_filter_managers();var t=q(G.prototype.to_dict.call(this),{filters:this.filters_manager.to_dict()});return this.filters_manager.visible()&&this.setup_multitrack_filtering(),t},request_draw:function(t){g.each(this.drawables,function(e){e.request_draw(t)})}});var X=Backbone.View.extend({initialize:function(t){q(t,{obj_type:"View"}),G.call(this,"View",t.container,t),this.chrom=null,this.vis_id=t.vis_id,this.dbkey=t.dbkey,this.stand_alone=void 0===t.stand_alone||t.stand_alone,this.label_tracks=[],this.tracks_to_be_redrawn=[],this.max_low=0,this.max_high=0,this.zoom_factor=3,this.min_separation=30,this.has_changes=!1,this.load_chroms_deferred=null,this.render(),this.canvas_manager=new m.default.CanvasManager(this.container.get(0).ownerDocument),this.reset(),this.config=M.default.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"}],{name:t.name})},render:function(){this.requested_redraw=!1;var t=this.container,e=this;this.top_container=$("<div/>").addClass("top-container").appendTo(t),this.browser_content_div=$("<div/>").addClass("content").appendTo(t),this.bottom_container=$("<div/>").addClass("bottom-container").appendTo(t),this.top_labeltrack=$("<div/>").addClass("top-labeltrack").appendTo(this.top_container),this.viewport_container=$("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div),this.content_div=this.viewport_container,A(this.viewport_container,e),this.intro_div=$("<div/>").addClass("intro").appendTo(this.viewport_container);$("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){m.default.select_datasets({dbkey:e.dbkey},function(t){g.each(t,function(t){e.add_drawable(at(t,e,e))})})});this.nav_container=$("<div/>").addClass("trackster-nav-container").prependTo(this.top_container),this.nav=$("<div/>").addClass("trackster-nav").appendTo(this.nav_container),this.stand_alone&&(this.nav_container.addClass("stand-alone"),this.nav.addClass("stand-alone")),this.overview=$("<div/>").addClass("overview").appendTo(this.bottom_container),this.overview_viewport=$("<div/>").addClass("overview-viewport").appendTo(this.overview),this.overview_close=$("<a/>").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport),this.overview_highlight=$("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport),this.overview_box_background=$("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport),this.overview_box=$("<div/>").addClass("overview-box").appendTo(this.overview_viewport),this.default_overview_height=this.overview_box.height(),this.nav_controls=$("<div/>").addClass("nav-controls").appendTo(this.nav),this.chrom_select=$("<select/>").attr({name:"chrom"}).addClass("chrom-nav").append("<option value=''>Loading</option>").appendTo(this.nav_controls);this.nav_input=$("<input/>").addClass("nav-input").hide().bind("keyup focusout",function(t){"focusout"!==t.type&&13!==(t.keyCode||t.which)&&27!==(t.keyCode||t.which)||(27!==(t.keyCode||t.which)&&e.go_to($(this).val()),$(this).hide(),$(this).val(""),e.location_span.show(),e.chrom_select.show()),t.stopPropagation()}).appendTo(this.nav_controls),this.location_span=$("<span/>").addClass("location").attr("title","Click to change location").tooltip({placement:"bottom"}).appendTo(this.nav_controls),this.location_span.click(function(){e.location_span.hide(),e.chrom_select.hide(),e.nav_input.val(e.chrom+":"+e.low+"-"+e.high),e.nav_input.css("display","inline-block"),e.nav_input.select(),e.nav_input.focus(),e.nav_input.autocomplete({source:function(t,i){var a=[],n=$.map(e.get_tracks(Q),function(e){return e.data_manager.search_features(t.term).success(function(t){a=a.concat(t)})});$.when.apply($,n).done(function(){i($.map(a,function(t){return{label:t[0],value:t[1]}}))})},minLength:2})}),void 0!==this.vis_id&&(this.hidden_input=$("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)),this.zo_link=$("<a/>").attr("id","zoom-out").attr("title","Zoom out").tooltip({placement:"bottom"}).click(function(){e.zoom_out()}).appendTo(this.nav_controls),this.zi_link=$("<a/>").attr("id","zoom-in").attr("title","Zoom in").tooltip({placement:"bottom"}).click(function(){e.zoom_in()}).appendTo(this.nav_controls),this.load_chroms_deferred=this.load_chroms({low:0}),this.chrom_select.bind("change",function(){e.change_chrom(e.chrom_select.val())}),this.browser_content_div.click(function(t){$(this).find("input").trigger("blur")}),this.browser_content_div.bind("dblclick",function(t){e.zoom_in(t.pageX,this.viewport_container)}),this.overview_box.bind("dragstart",function(t,e){this.current_x=e.offsetX}).bind("drag",function(t,i){var a=i.offsetX-this.current_x;this.current_x=i.offsetX;var n=Math.round(a/e.viewport_container.width()*(e.max_high-e.max_low));e.move_delta(-n)}),this.overview_close.click(function(){e.reset_overview()}),this.viewport_container.bind("draginit",function(t,i){if(t.clientX>e.viewport_container.width()-16)return!1}).bind("dragstart",function(t,i){i.original_low=e.low,i.current_height=t.clientY,i.current_x=i.offsetX}).bind("drag",function(t,i){var a=$(this),n=i.offsetX-i.current_x,o=a.scrollTop()-(t.clientY-i.current_height);a.scrollTop(o),i.current_height=t.clientY,i.current_x=i.offsetX;var s=Math.round(n/e.viewport_container.width()*(e.high-e.low));e.move_delta(s)}),this.top_labeltrack.bind("dragstart",function(t,i){return $("<div/>").addClass("zoom-area").css("height",e.browser_content_div.height()+e.top_labeltrack.height()+1).appendTo($(this))}).bind("drag",function(t,i){$(i.proxy).css({left:Math.min(t.pageX,i.startX)-e.container.offset().left,width:Math.abs(t.pageX-i.startX)});var a=Math.min(t.pageX,i.startX)-e.container.offset().left,n=Math.max(t.pageX,i.startX)-e.container.offset().left,o=e.high-e.low,s=e.viewport_container.width();e.update_location(Math.round(a/s*o)+e.low,Math.round(n/s*o)+e.low)}).bind("dragend",function(t,i){var a=Math.min(t.pageX,i.startX),n=Math.max(t.pageX,i.startX),o=e.high-e.low,s=e.viewport_container.width(),r=e.low;e.low=Math.round(a/s*o)+r,e.high=Math.round(n/s*o)+r,$(i.proxy).remove(),e.request_redraw()}),this.add_label_track(new I(this,{content_div:this.top_labeltrack})),$(window).bind("resize",function(){this.resize_timer&&clearTimeout(this.resize_timer),this.resize_timer=setTimeout(function(){e.resize_window()},500)}),$(document).bind("redraw",function(){e.redraw()}),this.reset(),$(window).trigger("resize")},get_base_color:function(t){return this.config.get_value(t.toLowerCase()+"_color")||this.config.get_value("n_color")}});q(X.prototype,G.prototype,{changed:function(){this.has_changes=!0},update_intro_div:function(){this.intro_div.toggle(0===this.drawables.length)},trigger_navigate:function(t,e,i,a){if(this.timer&&clearTimeout(this.timer),a){var n=this;this.timer=setTimeout(function(){n.trigger("navigate",t+":"+e+"-"+i)},500)}else view.trigger("navigate",t+":"+e+"-"+i)},update_location:function(t,e){this.location_span.text(b.default.commatize(t)+" - "+b.default.commatize(e)),this.nav_input.val(this.chrom+":"+b.default.commatize(t)+"-"+b.default.commatize(e));var i=this.chrom_select.val();""!==i&&this.trigger_navigate(i,this.low,this.high,!0)},load_chroms:function(t){t.num=100;var e=this,i=$.Deferred();return $.ajax({url:Galaxy.root+"api/genomes/"+this.dbkey,data:t,dataType:"json",success:function(t){if(0!==t.chrom_info.length){if(t.reference){var a=new U(e);e.add_label_track(a),e.reference_track=a}e.chrom_data=t.chrom_info,e.chrom_select.html(""),e.chrom_select.append($('<option value="">Select Chrom/Contig</option>'));for(var n=0,o=e.chrom_data.length;n<o;n++){var s=e.chrom_data[n].chrom,r=$("<option>");r.text(s),r.val(s),e.chrom_select.append(r)}t.prev_chroms&&e.chrom_select.append($('<option value="previous">Previous 100</option>')),t.next_chroms&&e.chrom_select.append($('<option value="next">Next 100</option>')),e.chrom_start_index=t.start_index,i.resolve(t.chrom_info)}},error:function(){alert("Could not load chroms for this dbkey: "+e.dbkey)}}),i},change_chrom:function(t,e,i){var a=this;if(a.chrom_data){if(t&&"None"!==t)if("previous"!==t)if("next"!==t){var n=$.grep(a.chrom_data,function(e,i){return e.chrom===t})[0];if(void 0!==n){if(t!==a.chrom){a.chrom=t,a.chrom_select.val(a.chrom),a.max_high=n.len-1,a.reset();for(var o=0,s=a.drawables.length;o<s;o++){var r=a.drawables[o];r.init&&r.init()}a.reference_track&&a.reference_track.init()}void 0===e&&void 0===i?(a.low=0,a.high=a.max_high):(a.low=void 0!==e?Math.max(e,0):0,void 0===i?(a.low=Math.max(a.low-15,0),a.high=a.low+30):a.high=Math.min(i,a.max_high)),a.request_redraw()}else a.load_chroms({chrom:t},function(){a.change_chrom(t,e,i)})}else a.load_chroms({low:this.chrom_start_index+100});else a.load_chroms({low:this.chrom_start_index-100})}else a.load_chroms_deferred.then(function(){a.change_chrom(t,e,i)})},go_to:function(t){var e=(t=(t=t.replace(/,/g,"")).replace(/:|\-/g," ")).split(/\s+/),i=e[0],a=e[1]?parseInt(e[1],10):void 0,n=e[2]?parseInt(e[2],10):void 0;this.change_chrom(i,a,n)},move_fraction:function(t){var e=this,i=e.high-e.low;this.move_delta(t*i)},move_delta:function(t){var e=this,i=e.high-e.low;e.low-t<e.max_low?(e.low=e.max_low,e.high=e.max_low+i):e.high-t>e.max_high?(e.high=e.max_high,e.low=e.max_high-i):(e.high-=t,e.low-=t),e.request_redraw({data_fetch:!1}),this.redraw_on_move_fn&&clearTimeout(this.redraw_on_move_fn),this.redraw_on_move_fn=setTimeout(function(){e.request_redraw()},200);var a=e.chrom_select.val();this.trigger_navigate(a,e.low,e.high,!0)},add_drawable:function(t){G.prototype.add_drawable.call(this,t),t.init(),this.changed(),this.update_intro_div();var e=this;t.config.on("change",function(){e.changed()})},add_label_track:function(t){t.view=this,t.init(),this.label_tracks.push(t)},remove_drawable:function(t,e){if(G.prototype.remove_drawable.call(this,t),e){var i=this;t.container_div.hide(0,function(){$(this).remove(),i.update_intro_div()})}},reset:function(){this.low=this.max_low,this.high=this.max_high,this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(t,e){var i=this,a=e?[e]:i.drawables;g.each(a,function(e){var a=g.find(i.tracks_to_be_redrawn,function(t){return t[0]===e});a?a[1]=t:i.tracks_to_be_redrawn.push([e,t])}),this.requested_redraw||(requestAnimationFrame(function(){i._redraw()}),this.requested_redraw=!0)},_redraw:function(){this.requested_redraw=!1;var t=this.low,e=this.high;t<this.max_low&&(t=this.max_low),e>this.max_high&&(e=this.max_high);var i=this.high-this.low;0!==this.high&&i<this.min_separation&&(e=t+this.min_separation),this.low=Math.floor(t),this.high=Math.ceil(e),this.update_location(this.low,this.high),this.resolution_px_b=this.viewport_container.width()/(this.high-this.low);var a=this.low/(this.max_high-this.max_low)*this.overview_viewport.width()||0,n=(this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width()||0;this.overview_box.css({left:a,width:Math.max(13,n)}).show(),n<13&&this.overview_box.css("left",a-(13-n)/2),this.overview_highlight&&this.overview_highlight.css({left:a,width:n}),g.each(this.tracks_to_be_redrawn,function(t){var e=t[0],i=t[1];e&&e._draw(i)}),this.tracks_to_be_redrawn=[],g.each(this.label_tracks,function(t){t._draw()})},zoom_in:function(t,e){if(!(0===this.max_high||this.high-this.low<=this.min_separation)){var i=this.high-this.low,a=i/2+this.low,n=i/this.zoom_factor/2;t&&(a=t/this.viewport_container.width()*(this.high-this.low)+this.low),this.low=Math.round(a-n),this.high=Math.round(a+n),this.changed(),this.request_redraw()}},zoom_out:function(){if(0!==this.max_high){var t=this.high-this.low,e=t/2+this.low,i=t*this.zoom_factor/2;this.low=Math.round(e-i),this.high=Math.round(e+i),this.changed(),this.request_redraw()}},resize_viewport:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height())},resize_window:function(){this.resize_viewport(),this.request_redraw()},set_overview:function(t){if(this.overview_drawable){if(this.overview_drawable.dataset.id===t.dataset.id)return;this.overview_viewport.find(".track").remove()}var e=t.copy({content_div:this.overview_viewport}),i=this;e.header_div.hide(),e.is_overview=!0,i.overview_drawable=e,this.overview_drawable.postdraw_actions=function(){i.overview_highlight.show().height(i.overview_drawable.content_div.height()),i.overview_viewport.height(i.overview_drawable.content_div.height()+i.overview_box.outerHeight()),i.overview_close.show(),i.resize_window()},i.overview_drawable.request_draw(),this.changed()},reset_overview:function(){$(".tooltip").remove(),this.overview_viewport.find(".track-tile").remove(),this.overview_viewport.height(this.default_overview_height),this.overview_box.height(this.default_overview_height),this.overview_close.hide(),this.overview_highlight.hide(),view.resize_window(),view.overview_drawable=null}});var H=T.default.Tool.extend({defaults:{track:null},initialize:function(t){T.default.Tool.prototype.initialize.call(this,t);var e=!0;void 0!==t.tool_state&&void 0!==t.tool_state.hidden&&(e=t.tool_state.hidden),this.set("hidden",e),this.remove_inputs(["data","hidden_data","conditional"])},state_dict:function(t){return g.extend(this.get_inputs_dict(),{hidden:!this.is_visible()})}}),P=Backbone.View.extend({events:{"change :input":"update_value"},render:function(){var t=this.$el.addClass("param-row"),e=this.model;$("<div>").addClass("param-label").text(e.get("label")).appendTo(t);$("<div/>").addClass("param-input").html(e.get("html")).appendTo(t).find(":input").val(e.get("value")),$("<div style='clear: both;'/>").appendTo(t)},update_value:function(t){this.model.set_value($(t.target).val())}}),O=Backbone.View.extend({initialize:function(t){this.model.on("change:hidden",this.set_visible,this)},render:function(){var t=this,e=this.model,i=this.$el.addClass("dynamic-tool").hide();i.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).keydown(function(t){t.stopPropagation()});$("<div class='tool-name'>").appendTo(i).text(e.get("name"));e.get("inputs").each(function(t){var e=new P({model:t});e.render(),i.append(e.$el)}),i.find("input").click(function(){$(this).select()});var a=$("<div>").addClass("param-row").appendTo(i),n=$("<input type='submit'>").attr("value","Run on complete dataset").appendTo(a);$("<input type='submit'>").attr("value","Run on visible region").appendTo(a).click(function(){t.run_on_region()}),n.click(function(){t.run_on_dataset()}),e.is_visible()&&this.$el.show()},set_visible:function(){this.$el.toggle(this.model.is_visible())},update_params:function(){for(var t=0;t<this.params.length;t++)this.params[t].update_value()},run_on_dataset:function(){var t=this.model;this.run({target_dataset_id:this.model.get("track").dataset.id,action:"rerun",tool_id:t.id},null,function(e){Galaxy.modal.show({title:t.get("name")+" is Running",body:t.get("name")+" is running on the complete dataset. Tool outputs are in dataset's history.",buttons:{Close:function(){Galaxy.modal.hide()}}})})},run_on_region:function(){var t,e=this.model.get("track"),i=this.model,a=new m.default.GenomeRegion({chrom:e.view.chrom,start:e.view.low,end:e.view.high}),n={target_dataset_id:e.dataset.id,action:"rerun",tool_id:i.id,regions:[a.toJSON()]},o=e,s=i.get("name")+o.tool_region_and_parameters_str(a);if(o.container===view){var r=new N(view,view,{name:e.config.get_value("name")}),l=o.container.replace_drawable(o,r,!1);r.container_div.insertBefore(o.view.content_div.children()[l]),r.add_drawable(o),o.container_div.appendTo(r.content_div),t=r}else t=o.container;var h=new o.constructor(view,t,{name:s,hda_ldda:"hda"});h.init_for_tool_data(),h.change_mode(o.mode),h.set_filters_manager(o.filters_manager.copy(h)),h.update_icons(),t.add_drawable(h),h.tiles_div.text("Starting job."),this.run(n,h,function(t){h.set_dataset(new C.default.Dataset(t)),h.tiles_div.text("Running job."),h.init()})},run:function(t,e,i){t.inputs=this.model.get_inputs_dict();var a=new b.default.ServerStateDeferred({ajax_settings:{url:Galaxy.root+"api/tools",data:JSON.stringify(t),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});$.when(a.go()).then(function(t){"no converter"===t?(e.container_div.addClass("error"),e.content_div.text(D)):t.error?(e.container_div.addClass("error"),e.content_div.text("Tool cannot be rerun: "+t.message)):i(t)})}}),R=function(t,e){k.default.Scaler.call(this,e),this.filter=t};R.prototype.gen_val=function(t){return this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high?this.default_val:(parseFloat(t[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low)};var L=function(t,e,i,a,n){this.track=t,this.region=e,this.low=e.get("start"),this.high=e.get("end"),this.w_scale=i,this.canvas=a,this.html_elt=$("<div class='track-tile'/>").append(a),this.data=n,this.stale=!1};L.prototype.predisplay_actions=function(){};var Y=function(t,e,i,a,n){L.call(this,t,e,i,a,n)};Y.prototype.predisplay_actions=function(){};var B=function(t,e,i,a,n,o,s,r,l,h,d){L.call(this,t,e,i,a,n),this.mode=o,this.all_slotted=r,this.feature_mapper=l,this.has_icons=!1,this.incomplete_features=h,this.other_tiles_features_drawn={},this.seq_data=d};q(B.prototype,L.prototype),B.prototype.predisplay_actions=function(){};var J=function(t,e,i){q(i,{drag_handle_class:"draghandle"}),j.call(this,t,e,i),this.dataset=null,i.dataset&&(this.dataset=i.dataset instanceof Backbone.Model?i.dataset:new C.default.Dataset(i.dataset)),this.dataset_check_type="converted_datasets_state",this.data_url_extra_params={},this.data_query_wait="data_query_wait"in i?i.data_query_wait:5e3,this.data_manager="data_manager"in i?i.data_manager:new m.default.GenomeDataManager({dataset:this.dataset,genome:new m.default.Genome({key:t.dbkey,chroms_info:{chrom_info:t.chrom_data}}),data_mode_compatible:this.data_and_mode_compatible,can_subset:this.can_subset}),this.min_height_px=16,this.max_height_px=800,this.visible_height_px=this.config.get_value("height"),this.content_div=$("<div class='track-content'>").appendTo(this.container_div),this.container&&(this.container.content_div.append(this.container_div),"resize"in i&&!i.resize||this.add_resize_handle())};q(J.prototype,j.prototype,{action_icons_def:[{name:"mode_icon",title:(0,p.default)("Set display mode"),css_class:"chevron-expand",on_click_fn:function(){}},j.prototype.action_icons_def[0],{name:"overview_icon",title:(0,p.default)("Set as overview"),css_class:"application-dock-270",on_click_fn:function(t){t.view.set_overview(t)}},j.prototype.action_icons_def[1],{name:"filters_icon",title:(0,p.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?t.filters_manager.clear_filters():t.filters_manager.init_filters(),t.filters_manager.toggle()}},{name:"tools_icon",title:(0,p.default)("Tool"),css_class:"hammer",on_click_fn:function(t){t.tool.toggle(),t.tool.is_visible()?t.set_name(t.config.get_value("name")+t.tool_region_and_parameters_str()):t.revert_name(),$(".tooltip").remove()}},{name:"param_space_viz_icon",title:(0,p.default)("Tool parameter space visualization"),css_class:"arrow-split",on_click_fn:function(t){var e="<strong>Tool</strong>:"+t.tool.get("name")+"<br/><strong>Dataset</strong>:"+t.config.get_value("name")+'<br/><strong>Region(s)</strong>: <select name="regions"><option value="cur">current viewing area</option><option value="bookmarks">bookmarks</option><option value="both">current viewing area and bookmarks</option></select>',i=function(){Galaxy.modal.hide(),$(window).unbind("keypress.check_enter_esc")},a=function(){var e,i=$('select[name="regions"] option:selected').val(),a=new m.default.GenomeRegion({chrom:view.chrom,start:view.low,end:view.high}),n=g.map($(".bookmark"),function(t){return new m.default.GenomeRegion({from_str:$(t).children(".position").text()})});e="cur"===i?[a]:"bookmarks"===i?n:[a].concat(n),Galaxy.modal.hide(),window.location.href=Galaxy.root+"visualization/sweepster?"+$.param({dataset_id:t.dataset.id,hda_ldda:t.dataset.get("hda_ldda"),regions:JSON.stringify(new Backbone.Collection(e).toJSON())})};Galaxy.modal.show({title:"Visualize tool parameter space and output from different parameter settings?",body:e,buttons:{No:i,Yes:a}})}},j.prototype.action_icons_def[2]],can_draw:function(){return this.dataset&&j.prototype.can_draw.call(this)},build_container_div:function(){return $("<div/>").addClass("track").attr("id","track_"+this.id)},set_dataset:function(t){this.dataset=t,this.data_manager.set("dataset",t)},on_resize:function(){this.request_draw({clear_tile_cache:!0})},add_resize_handle:function(){var t=this,e=!1,i=!1,a=$("<div class='track-resize'>");$(t.container_div).hover(function(){t.config.get_value("content_visible")&&(e=!0,a.show())},function(){e=!1,i||a.hide()}),a.hide().bind("dragstart",function(e,a){i=!0,a.original_height=$(t.content_div).height()}).bind("drag",function(e,i){var a=Math.min(Math.max(i.original_height+i.deltaY,t.min_height_px),t.max_height_px);$(t.tiles_div).css("height",a),t.visible_height_px=t.max_height_px===a?0:a,t.on_resize()}).bind("dragend",function(n,o){t.tile_cache.clear(),i=!1,e||a.hide(),t.config.set_value("height",t.visible_height_px),t.changed()}).appendTo(t.container_div)},hide_contents:function(){this.tiles_div.hide(),this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.tiles_div.show(),this.container_div.find(".yaxislabel, .track-resize").show(),this.request_draw()},get_type:function(){return this instanceof I?"LabelTrack":this instanceof U?"ReferenceTrack":this instanceof Z?"LineTrack":this instanceof et?"ReadTrack":this instanceof tt?"VariantTrack":this instanceof W?"CompositeTrack":this instanceof Q?"FeatureTrack":""},show_message:function(t){return this.tiles_div.remove(),$("<span/>").addClass("message").html(t).appendTo(this.content_div)},init:function(t){var e=this;if(e.enabled=!1,e.tile_cache.clear(),e.data_manager.clear(),e.content_div.children().remove(),e.container_div.removeClass("nodata error pending"),e.tiles_div=$("<div/>").addClass("tiles").appendTo(e.content_div),e.dataset.id){var i=$.Deferred(),a={hda_ldda:e.dataset.get("hda_ldda"),data_type:this.dataset_check_type,chrom:e.view.chrom,retry:t};return $.getJSON(this.dataset.url(),a,function(t){if(t&&"error"!==t&&"error"!==t.kind)"no converter"===t?(e.container_div.addClass("error"),e.show_message(D)):"no data"===t||void 0!==t.data&&(null===t.data||0===t.data.length)?(e.container_div.addClass("nodata"),e.show_message("No data for this chrom/contig.")):"pending"===t?(e.container_div.addClass("pending"),e.show_message("Preparing data. This can take a while for a large dataset. If the visualization is saved and closed, preparation will continue in the background."),setTimeout(function(){e.init()},e.data_query_wait)):"data"!==t&&"data"!==t.status||(t.valid_chroms&&(e.valid_chroms=t.valid_chroms,e.update_icons()),e.tiles_div.text("Ready for display"),e.view.chrom?(e.tiles_div.text(""),e.tiles_div.css("height",e.visible_height_px+"px"),e.enabled=!0,$.when.apply($,e.predraw_init()).done(function(){i.resolve(),e.container_div.removeClass("nodata error pending"),e.request_draw()})):i.resolve());else{e.container_div.addClass("error");var a=e.show_message("Cannot display dataset due to an error. ");t.message&&(a.append($("<a href='javascript:void(0);'></a>").text("View error").click(function(){Galaxy.modal.show({title:(0,p.default)("Trackster Error"),body:"<pre>"+t.message+"</pre>",buttons:{Close:function(){Galaxy.modal.hide()}}})})),a.append($("<span/>").text(" ")),a.append($("<a href='javascript:void(0);'></a>").text("Try again").click(function(){e.init(!0)})))}}),this.update_icons(),i}},predraw_init:function(){var t=this;return $.getJSON(t.dataset.url(),{data_type:"data",stats:!0,chrom:t.view.chrom,low:0,high:t.view.max_high,hda_ldda:t.dataset.get("hda_ldda")},function(e){var i=e.data;if(i&&void 0!==i.min&&void 0!==i.max){var a=i.min,n=i.max;a=Math.floor(Math.min(0,Math.max(a,i.mean-2*i.sd))),n=Math.ceil(Math.max(0,Math.min(n,i.mean+2*i.sd))),t.config.set_default_value("min_value",a),t.config.set_default_value("max_value",n),t.config.set_value("min_value",a),t.config.set_value("max_value",n)}})},get_drawables:function(){return this}});var E=function(t,e,i){J.call(this,t,e,i);var a=this;if(F(a.container_div,a.drag_handle_class,".group",a),this.filters_manager=new x.default.FiltersManager(this,"filters"in i?i.filters:null),this.data_manager.set("filters_manager",this.filters_manager),this.filters_available=!1,this.tool=i.tool?new H(g.extend(i.tool,{track:this,tool_state:i.tool_state})):null,this.tile_cache=new m.default.Cache(10),this.left_offset=0,this.header_div&&(this.set_filters_manager(this.filters_manager),this.tool)){var n=new O({model:this.tool});n.render(),this.dynamic_tool_div=n.$el,this.header_div.after(this.dynamic_tool_div)}this.tiles_div=$("<div/>").addClass("tiles").appendTo(this.content_div),this.config.get_value("content_visible")||this.tiles_div.hide(),this.overlay_div=$("<div/>").addClass("overlay").appendTo(this.content_div),i.mode&&this.change_mode(i.mode)};q(E.prototype,j.prototype,J.prototype,{action_icons_def:J.prototype.action_icons_def.concat([{name:"show_more_rows_icon",title:"To minimize track height, not all feature rows are displayed. Click to display more rows.",css_class:"exclamation",on_click_fn:function(t){$(".tooltip").remove(),t.slotters[t.view.resolution_px_b].max_rows*=2,t.request_draw({clear_tile_cache:!0})},hide:!0}]),copy:function(t){var e=this.to_dict();q(e,{data_manager:this.data_manager});var i=new this.constructor(this.view,t,e);return i.change_mode(this.mode),i.enabled=this.enabled,i},set_filters_manager:function(t){this.filters_manager=t,this.header_div.after(this.filters_manager.parent_div)},to_dict:function(){return{track_type:this.get_type(),dataset:{id:this.dataset.id,hda_ldda:this.dataset.get("hda_ldda")},prefs:this.config.to_key_value_dict(),mode:this.mode,filters:this.filters_manager.to_dict(),tool_state:this.tool?this.tool.state_dict():{}}},set_min_max:function(){var t=this;return $.getJSON(t.dataset.url(),{data_type:"data",stats:!0,chrom:t.view.chrom,low:0,high:t.view.max_high,hda_ldda:t.dataset.get("hda_ldda")},function(e){var i=e.data;if(isNaN(parseFloat(t.config.get_value("min_value")))||isNaN(parseFloat(t.config.get_value("max_value")))){var a=i.min,n=i.max;a=Math.floor(Math.min(0,Math.max(a,i.mean-2*i.sd))),n=Math.ceil(Math.max(0,Math.min(n,i.mean+2*i.sd))),t.config.set_value("min_value",a),t.config.set_value("max_value",n)}})},change_mode:function(t){var e=this;return e.mode=t,e.config.set_value("mode",t),"Auto"===t&&this.data_manager.clear(),e.request_draw({clear_tile_cache:!0}),this.action_icons.mode_icon.attr("title","Set display mode (now: "+e.mode+")"),e},update_icons:function(){var t=this;t.action_icons.filters_icon.toggle(t.filters_available),t.action_icons.tools_icon.toggle(null!==t.tool),t.action_icons.param_space_viz_icon.toggle(null!==t.tool)},_gen_tile_cache_key:function(t,e){return t+"_"+e},request_draw:function(t){t&&t.clear_tile_cache&&this.tile_cache.clear(),this.view.request_redraw(t,this)},before_draw:function(){this.max_height_px=0},_draw:function(t){if(this.can_draw()){var e=t&&t.clear_after,i=this.view.low,a=this.view.high,n=this.view.container.width(),o=this.view.resolution_px_b,s=1/o;this.is_overview&&(i=this.view.max_low,a=this.view.max_high,s=1/(o=n/(view.max_high-view.max_low))),this.before_draw(),this.tiles_div.children().addClass("remove");for(var r,l,h=Math.floor(400*s),d=Math.floor(i/h),_=[],c=[];d*h<a;)r=new m.default.GenomeRegion({chrom:this.view.chrom,start:d*h,end:Math.min((d+1)*h,this.view.max_high)}),l=this.draw_helper(r,o,t),_.push(l),$.when(l).then(function(t){c.push(t)}),d+=1;e||this.tiles_div.children(".remove").removeClass("remove").remove();var u=this;$.when.apply($,_).then(function(){u.tiles_div.children(".remove").remove(),0!==(c=g.filter(c,function(t){return null!==t})).length&&u.postdraw_actions(c,n,o,e)})}},_add_yaxis_label:function(t,e){var i=this,a="max"===t?"top":"bottom",n="max"===t?"max":"min",o="max"===t?"max_value":"min_value",s=this.container_div.find(".yaxislabel."+a),r=f(i.config.get_value(o),1);e=e||function(){i.request_draw({clear_tile_cache:!0})},0!==s.length?s.text(r):(s=$("<div/>").text(r).make_text_editable({num_cols:12,on_finish:function(t){$(".tooltip").remove(),i.config.set_value(o,f(t,1)),e()},help_text:"Set "+n+" value"}).addClass("yaxislabel "+a).css("color",this.config.get_value("label_color")),this.container_div.prepend(s))},postdraw_actions:function(t,e,i,a){if(g.filter(t,function(t){return t instanceof Y}).length>0){this.max_height_px=0;var n=this;g.each(t,function(t){t instanceof Y||(t.html_elt.remove(),n.draw_helper(t.region,i,{force:!0,mode:"Coverage"}))}),n._add_yaxis_label("max")}else this.container_div.find(".yaxislabel").remove(),g.find(t,function(t){return t.has_icons})&&g.each(t,function(t){t.has_icons||t.html_elt.css("padding-top",20)})},get_mode:function(t){return this.mode},update_auto_mode:function(t){},_get_drawables:function(){return[this]},draw_helper:function(t,e,i){i||(i={});var a=i.force,n=i.mode||this.mode,o=1/e,s=this,r=this._get_drawables(),l=this._gen_tile_cache_key(e,t),h=a?void 0:s.tile_cache.get_elt(l);if(h)return function(t){return t&&"track"in t}(h)&&s.show_tile(h,e),h;if(!1===i.data_fetch)return null;var d=function(){var e=g.find(V,function(t){return t===n})?"Coverage":n,i=g.map(r,function(i){return i.data_manager.get_data(t,e,o,s.data_url_extra_params)});return view.reference_track&&i.push(view.reference_track.data_manager.get_data(t,n,o,view.reference_track.data_url_extra_params)),i},_=$.Deferred();return s.tile_cache.set_elt(l,_),$.when.apply($,d()).then(function(){var a,n=d(),o=n;if(g.find(n,function(t){return b.default.is_deferred(t)}))return s.tile_cache.set_elt(l,void 0),void $.when(s.draw_helper(t,e,i)).then(function(t){_.resolve(t)});view.reference_track&&(a=view.reference_track.data_manager.subset_entry(n.pop(),t));var h=[],c=[];g.each(r,function(t,i){var a=t.mode,n=o[i];"Auto"===a&&(a=t.get_mode(n),t.update_auto_mode(a)),h.push(a),c.push(t.get_canvas_height(n,a,e,m))});var u,f=s.view.canvas_manager.new_canvas(),v=t.get("start"),p=t.get("end"),m=Math.ceil((p-v)*e)+s.left_offset,w=g.max(c);f.width=m,f.height=i.height||w;var y=f.getContext("2d");y.translate(s.left_offset,0),r.length>1&&(y.globalAlpha=.5,y.globalCompositeOperation="source-over"),g.each(r,function(i,n){u=i.draw_tile(o[n],y,h[n],t,e,a)}),void 0!==u&&(s.tile_cache.set_elt(l,u),s.show_tile(u,e)),_.resolve(u)}),_},get_canvas_height:function(t,e,i,a){return this.visible_height_px},_draw_line_track_tile:function(t,e,i,a,n){-1!==[void 0,null].indexOf(this.config.get_value("min_value"))&&this.config.set_value("min_value",0),-1!==[void 0,null,0].indexOf(this.config.get_value("max_value"))&&this.config.set_value("max_value",g.max(g.map(t.data,function(t){return t[1]}))||0);var o=e.canvas;return new k.default.LinePainter(t.data,a.get("start"),a.get("end"),this.config.to_key_value_dict(),i).draw(e,o.width,o.height,n),new Y(this,a,n,o,t.data)},draw_tile:function(t,e,i,a,n,o){},show_tile:function(t,e){var i=t.html_elt;t.predisplay_actions();var a=Math.round((t.low-(this.is_overview?this.view.max_low:this.view.low))*e);this.left_offset&&(a-=this.left_offset),i.css("left",a),i.hasClass("remove")?i.removeClass("remove"):this.tiles_div.append(i),i.css("height","auto"),this.max_height_px=Math.max(this.max_height_px,i.height()-2),i.parent().children().css("height",this.max_height_px+"px");var n=this.max_height_px;0!==this.visible_height_px&&(n=Math.min(this.max_height_px,this.visible_height_px)),this.tiles_div.css("height",n+"px")},tool_region_and_parameters_str:function(t){var e=this;return" - region=["+(void 0!==t?t.toString():"all")+"], parameters=["+g.values(e.tool.get_inputs_dict()).join(", ")+"]"},data_and_mode_compatible:function(t,e){return"Auto"===e||("Coverage"===e?"bigwig"===t.dataset_type:"bigwig"!==t.dataset_type&&"no_detail"!==t.extra_info)},can_subset:function(t){return!t.message&&"no_detail"!==t.extra_info&&("bigwig"!==t.dataset_type||t.data[1][0]-t.data[0][0]==1)},init_for_tool_data:function(){this.data_manager.set("data_type","raw_data"),this.data_query_wait=1e3,this.dataset_check_type="state"}});var I=function(t,e){J.call(this,t,e,{resize:!1,header:!1}),this.container_div.addClass("label-track")};q(I.prototype,J.prototype,{init:function(){this.enabled=!0},predraw_init:function(){},_draw:function(t){for(var e=this.view,i=e.high-e.low,a=Math.floor(Math.pow(10,Math.floor(Math.log(i)/Math.log(10)))),n=Math.floor(e.low/a)*a,o=this.view.container.width(),s=$("<div/>").addClass("label-container");n<e.high;){var r=Math.floor((n-e.low)/i*o);s.append($("<div/>").addClass("pos-label").text(b.default.commatize(n)).css({left:r})),n+=a}this.content_div.children(":first").remove(),this.content_div.append(s)}});var W=function(t,e,i){if(E.call(this,t,e,i),this.drawables=[],"drawables"in i){for(var a,n=0;n<i.drawables.length;n++)a=i.drawables[n],this.drawables[n]=at(a,t,null),a.left_offset>this.left_offset&&(this.left_offset=a.left_offset);this.enabled=!0}g.each(this.drawables,function(t){(t instanceof Q||t instanceof et)&&t.change_mode("Coverage")}),this.update_icons(),this.obj_type="CompositeTrack"};q(W.prototype,E.prototype,{display_modes:V,build_config_params:function(){return g.union(j.prototype.config_params,[{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},action_icons_def:[{name:"composite_icon",title:(0,p.default)("Show individual tracks"),css_class:"layers-stack",on_click_fn:function(t){$(".tooltip").remove(),t.show_group()}}].concat(E.prototype.action_icons_def),to_dict:G.prototype.to_dict,add_drawable:G.prototype.add_drawable,unpack_drawables:G.prototype.unpack_drawables,config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},on_resize:function(){var t=this.visible_height_px;g.each(this.drawables,function(e){e.visible_height_px=t}),J.prototype.on_resize.call(this)},change_mode:function(t){E.prototype.change_mode.call(this,t);for(var e=0;e<this.drawables.length;e++)this.drawables[e].change_mode(t)},init:function(){for(var t=[],e=0;e<this.drawables.length;e++)t.push(this.drawables[e].init());var i=this;$.when.apply($,t).then(function(){i.enabled=!0,i.request_draw()})},update_icons:function(){this.action_icons.filters_icon.hide(),this.action_icons.tools_icon.hide(),this.action_icons.param_space_viz_icon.hide()},can_draw:j.prototype.can_draw,_get_drawables:function(){return this.drawables},show_group:function(){for(var t,e=new N(this.view,this.container,{name:this.config.get_value("name")}),i=0;i<this.drawables.length;i++)(t=this.drawables[i]).update_icons(),e.add_drawable(t),t.container=e,e.content_div.append(t.container_div);this.container.replace_drawable(this,e,!0);e.request_draw({clear_tile_cache:!0})},before_draw:function(){var t=g.min(g.map(this.drawables,function(t){return t.config.get_value("min_value")})),e=g.max(g.map(this.drawables,function(t){return t.config.get_value("max_value")}));this.config.set_value("min_value",t),this.config.set_value("max_value",e),g.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)})},update_all_min_max:function(){var t=this.config.get_value("min_value"),e=this.config.get_value("max_value");g.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)}),this.request_draw({clear_tile_cache:!0})},postdraw_actions:function(t,e,i,a){var n,o=-1;for(n=0;n<t.length;n++){var s=t[n].html_elt.find("canvas").height();s>o&&(o=s)}for(n=0;n<t.length;n++){var r=t[n];r.html_elt.find("canvas").height()!==o&&(this.draw_helper(r.region,i,{force:!0,height:o}),r.html_elt.remove())}var l=this,h=function(){l.update_all_min_max()};this._add_yaxis_label("min",h),this._add_yaxis_label("max",h)}});var U=function(t){E.call(this,t,{content_div:t.top_labeltrack},{resize:!1,header:!1}),this.left_offset=t.canvas_manager.char_width_px,this.container_div.addClass("reference-track"),this.data_url=Galaxy.root+"api/genomes/"+this.view.dbkey,this.data_url_extra_params={reference:!0},this.data_manager=new m.default.GenomeReferenceDataManager({data_url:this.data_url,can_subset:this.can_subset}),this.hide_contents()};q(U.prototype,j.prototype,E.prototype,{build_config_params:function(){return g.union(j.prototype.config_params,[{key:"height",type:"int",default_value:13,hidden:!0}])},init:function(){this.data_manager.clear(),this.enabled=!0},predraw_init:function(){},can_draw:j.prototype.can_draw,draw_helper:function(t,e,i){var a,n=this.tiles_div.is(":visible"),o=null;return e>this.view.canvas_manager.char_width_px?(this.tiles_div.show(),a=!0,o=E.prototype.draw_helper.call(this,t,e,i)):(a=!1,this.tiles_div.hide()),n!==a&&this.view.resize_viewport(),o},can_subset:function(t){return!0},draw_tile:function(t,e,i,a,n){var o=this.data_manager.subset_entry(t,a),s=o.data,r=e.canvas;e.font=e.canvas.manager.default_font,e.textAlign="center";for(var l=0,h=s.length;l<h;l++)e.fillStyle=this.view.get_base_color(s[l]),e.fillText(s[l],Math.floor(l*n),10);return new L(this,a,n,r,o)}});var Z=function(t,e,i){this.mode="Histogram",E.call(this,t,e,i),this.left_offset=30;var a=this;$.when(v(Galaxy.root+"datasets/"+this.dataset.id+"/display")).then(function(t){t&&(a.data_manager=new z.default.BBIDataManager({dataset:a.dataset}))})};q(Z.prototype,j.prototype,E.prototype,{display_modes:V,build_config_params:function(){return g.union(j.prototype.config_params,[{key:"color",label:"Color",type:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},before_draw:function(){},draw_tile:function(t,e,i,a,n){return this._draw_line_track_tile(t,e,i,a,n)},can_subset:function(t){return t.data[1][0]-t.data[0][0]==1},postdraw_actions:function(t,e,i,a){this._add_yaxis_label("max"),this._add_yaxis_label("min")}});var K=function(t,e,i){this.mode="Heatmap",E.call(this,t,e,i)};q(K.prototype,j.prototype,E.prototype,{display_modes:["Heatmap"],build_config_params:function(){return g.union(j.prototype.config_params,[{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"min_value",label:"Min Value",type:"int",default_value:void 0},{key:"max_value",label:"Max Value",type:"int",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:500,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},predraw_init:function(){var t=this;return $.getJSON(t.dataset.url(),{data_type:"data",stats:!0,chrom:t.view.chrom,low:0,high:t.view.max_high,hda_ldda:t.dataset.get("hda_ldda")},function(t){t.data})},draw_tile:function(t,e,i,a,n){var o=e.canvas;return new k.default.DiagonalHeatmapPainter(t.data,a.get("start"),a.get("end"),this.config.to_key_value_dict(),i).draw(e,o.width,o.height,n),new L(this,a,n,o,t.data)}});var Q=function(t,e,i){E.call(this,t,e,i),this.container_div.addClass("feature-track"),this.summary_draw_height=30,this.slotters={},this.start_end_dct={},this.left_offset=200,this.set_painter_from_config()};q(Q.prototype,j.prototype,E.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return g.union(j.prototype.config_params,[{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0,help:"Show the number of items in each bin when drawing summary histogram"},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.set_painter_from_config(),this.request_draw({clear_tile_cache:!0})},set_painter_from_config:function(){"arcs"===this.config.get_value("connector_style")?this.painter=k.default.ArcLinkedFeaturePainter:this.painter=k.default.LinkedFeaturePainter},postdraw_actions:function(t,e,i,a){E.prototype.postdraw_actions.call(this,t,e,i,a);var n,o=this;if(0===g.filter(t,function(t){return t instanceof Y}).length){var s={};g.each(g.pluck(t,"incomplete_features"),function(t){g.each(t,function(t){s[t[0]]=t})});var r=this;g.each(t,function(t){var e=g.omit(s,g.map(t.incomplete_features,function(t){return t[0]}));if(e=g.omit(e,g.keys(t.other_tiles_features_drawn)),0!==g.size(e)){var i={data:g.values(e)},a=r.view.canvas_manager.new_canvas(),n=a.getContext("2d");a.height=Math.max(t.canvas.height,r.get_canvas_height(i,t.mode,t.w_scale,100)),a.width=t.canvas.width,n.drawImage(t.canvas,0,0),n.translate(o.left_offset,0);var l=r.draw_tile(i,n,t.mode,t.region,t.w_scale,t.seq_data);$(t.canvas).replaceWith($(l.canvas)),t.canvas=a,g.extend(t.other_tiles_features_drawn,s)}})}if(o.filters_manager){var l,h=o.filters_manager.filters;for(l=0;l<h.length;l++)h[l].update_ui_elt();var d,_,c=!1;for(n=0;n<t.length;n++)if(t[n].data.length)for(d=t[n].data[0],l=0;l<h.length;l++)if((_=h[l]).applies_to(d)&&_.min!==_.max){c=!0;break}o.filters_available!==c&&(o.filters_available=c,o.filters_available||o.filters_manager.hide(),o.update_icons())}if(t[0]instanceof B){var u=!0;for(n=0;n<t.length;n++)if(!t[n].all_slotted){u=!1;break}this.action_icons.show_more_rows_icon.toggle(!u)}else this.action_icons.show_more_rows_icon.hide()},update_auto_mode:function(t){"Auto"===this.mode&&("no_detail"===t&&(t="feature spans"),this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+t+")"))},incremental_slots:function(t,e,i){var a=this.view.canvas_manager.dummy_context,n=this.slotters[t];return n&&n.mode===i||(n=new y.default.FeatureSlotter(t,i,100,function(t){return a.measureText(t)}),this.slotters[t]=n),n.slot_features(e)},get_mode:function(t){return"no_detail"===t.extra_info||this.is_overview?"no_detail":this.view.high-this.view.low>12e3?"Squish":"Pack"},get_canvas_height:function(t,e,i,a){if("Coverage"===e||"bigwig"===t.dataset_type)return this.summary_draw_height;var n=this.incremental_slots(i,t.data,e),o=new this.painter(null,null,null,this.config.to_key_value_dict(),e);return Math.max(this.min_height_px,o.get_required_height(n,a))},draw_tile:function(t,e,i,a,n,o,s){var r=this,l=e.canvas,h=a.get("start"),d=a.get("end"),_=this.left_offset;if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,i,a,n);var c=[],u=this.slotters[n].slots,f=!0;if(t.data)for(var v=this.filters_manager.filters,p=0,g=t.data.length;p<g;p++){for(var m,w=t.data[p],b=!1,y=0,k=v.length;y<k;y++)if((m=v[y]).update_attrs(w),!m.keep(w)){b=!0;break}b||(c.push(w),w[0]in u||(f=!1))}var x=this.filters_manager.alpha_filter?new R(this.filters_manager.alpha_filter):null,$=this.filters_manager.height_filter?new R(this.filters_manager.height_filter):null,C=new this.painter(c,h,d,this.config.to_key_value_dict(),i,x,$,o,function(t){return r.view.get_base_color(t)}),T=null;if(e.fillStyle=this.config.get_value("block_color"),e.font=e.canvas.manager.default_font,e.textAlign="right",t.data){var M=C.draw(e,l.width,l.height,n,u);T=M.feature_mapper,incomplete_features=M.incomplete_features,T.translation=-_}return s?void 0:new B(r,a,n,l,t.data,i,t.message,f,T,incomplete_features,o)}});var tt=function(t,e,i){E.call(this,t,e,i),this.painter=k.default.VariantPainter,this.summary_draw_height=30,this.left_offset=30};q(tt.prototype,j.prototype,E.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return g.union(j.prototype.config_params,[{key:"color",label:"Histogram color",type:"color"},{key:"show_sample_data",label:"Show sample data",type:"bool",default_value:!0},{key:"show_labels",label:"Show summary and sample labels",type:"bool",default_value:!0},{key:"summary_height",label:"Locus summary height",type:"float",default_value:20},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},draw_tile:function(t,e,i,a,n){if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,"Histogram",a,n);var o=this.view;return new this.painter(t.data,a.get("start"),a.get("end"),this.config.to_key_value_dict(),i,function(t){return o.get_base_color(t)}).draw(e,e.canvas.width,e.canvas.height,n),new L(this,a,n,e.canvas,t.data)},get_canvas_height:function(t,e,i,a){if("bigwig"===t.dataset_type)return this.summary_draw_height;var n=this.dataset.get_metadata("sample_names")?this.dataset.get_metadata("sample_names").length:0;return 0===n&&0!==t.data.length&&(n=null===(n=t.data[0][7].match(/,/g))?1:n.length+1),new this.painter(null,null,null,this.config.to_key_value_dict(),e).get_required_height(n)},predraw_init:function(){var t=[J.prototype.predraw_init.call(this)];return this.dataset.get_metadata("sample_names")||t.push(this.dataset.fetch()),t},postdraw_actions:function(t,e,i,a){E.prototype.postdraw_actions.call(this,t,e,i,a);var n=g.filter(t,function(t){return t instanceof Y}),o=this.dataset.get_metadata("sample_names");if(0===n.length&&this.config.get_value("show_labels")&&o&&o.length>1){var s;if(0===this.container_div.find(".yaxislabel.variant").length&&(s=this.config.get_value("summary_height")/2,this.tiles_div.prepend($("<div/>").text("Summary").addClass("yaxislabel variant top").css({"font-size":s+"px",top:(this.config.get_value("summary_height")-s)/2+"px"})),this.config.get_value("show_sample_data"))){var r=o.join("<br/>");this.tiles_div.prepend($("<div/>").html(r).addClass("yaxislabel variant top sample").css({top:this.config.get_value("summary_height")}))}s=("Squish"===this.mode?5:10)+"px",$(this.tiles_div).find(".sample").css({"font-size":s,"line-height":s}),$(this.tiles_div).find(".yaxislabel").css("color",this.config.get_value("label_color"))}else this.container_div.find(".yaxislabel.variant").remove()}});var et=function(t,e,i){Q.call(this,t,e,i),this.painter=k.default.ReadPainter,this.update_icons()};q(et.prototype,j.prototype,E.prototype,Q.prototype,{build_config_params:function(){return g.union(j.prototype.config_params,[{key:"block_color",label:"Histogram color",type:"color"},{key:"detail_block_color",label:"Sense strand block color",type:"color",default_value:"#AAAAAA"},{key:"reverse_strand_color",label:"Antisense strand block color",type:"color",default_value:"#DDDDDD"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:!1},{key:"show_differences",label:"Show differences only",type:"bool",default_value:!0},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})}});var it={CompositeTrack:W,DrawableGroup:N,DiagonalHeatmapTrack:K,FeatureTrack:Q,LineTrack:Z,ReadTrack:et,VariantTrack:tt,VcfTrack:tt},at=function(t,e,i){if("copy"in t)return t.copy(i);var a=t.obj_type;return a||(a=t.track_type),new it[a](e,i,t)};t.default={TracksterView:X,DrawableGroup:N,LineTrack:Z,FeatureTrack:Q,DiagonalHeatmapTrack:K,ReadTrack:et,VariantTrack:tt,CompositeTrack:W,object_from_template:at}});
\ No newline at end of file
diff --git a/static/scripts/viz/visualization.js b/static/scripts/viz/visualization.js
index 5d8ff91d7eb..3bcda9716d1 100644
--- a/static/scripts/viz/visualization.js
+++ b/static/scripts/viz/visualization.js
@@ -1 +1 @@
-define("viz/visualization",["exports","libs/underscore","mvc/dataset/data","viz/trackster/util","utils/config","mvc/grid/grid-view","mvc/ui/ui-tabs","mvc/ui/ui-misc"],function(t,e,a,n,i,r,s,o){"use strict";function d(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var l=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var a in t)Object.prototype.hasOwnProperty.call(t,a)&&(e[a]=t[a]);return e.default=t,e}(e),u=d(a),_=d(n),c=d(i),h=d(r),g=d(s),f=(d(o),{toJSON:function(){var t=this,e={};return l.each(t.constructor.to_json_keys,function(a){var n=t.get(a);a in t.constructor.to_json_mappers&&(n=t.constructor.to_json_mappers[a](n,t)),e[a]=n}),e}}),m=function(t){this.default_font=void 0!==t?t:"9px Monaco, Lucida Console, monospace",this.dummy_canvas=this.new_canvas(),this.dummy_context=this.dummy_canvas.getContext("2d"),this.dummy_context.font=this.default_font,this.char_width_px=this.dummy_context.measureText("A").width,this.patterns={},this.load_pattern("right_strand","/visualization/strand_right.png"),this.load_pattern("left_strand","/visualization/strand_left.png"),this.load_pattern("right_strand_inv","/visualization/strand_right_inv.png"),this.load_pattern("left_strand_inv","/visualization/strand_left_inv.png")};l.extend(m.prototype,{load_pattern:function(t,e){var a=this.patterns,n=this.dummy_context,i=new Image;i.src=Galaxy.root+"static/images"+e,i.onload=function(){a[t]=n.createPattern(i,"repeat")}},get_pattern:function(t){return this.patterns[t]},new_canvas:function(){var t=$("<canvas/>")[0];return t.manager=this,t}});var v=Backbone.Model.extend({defaults:{num_elements:20,obj_cache:null,key_ary:null},initialize:function(t){this.clear()},get_elt:function(t){var e=this.attributes.obj_cache,a=this.attributes.key_ary,n=t.toString(),i=l.indexOf(a,function(t){return t.toString()===n});return-1!==i&&(e[n].stale?(a.splice(i,1),delete e[n]):this.move_key_to_end(t,i)),e[n]},set_elt:function(t,e){var a=this.attributes.obj_cache,n=this.attributes.key_ary,i=t.toString(),r=this.attributes.num_elements;return a[i]||(n.length>=r&&delete a[n.shift().toString()],n.push(t)),a[i]=e,e},move_key_to_end:function(t,e){this.attributes.key_ary.splice(e,1),this.attributes.key_ary.push(t)},clear:function(){this.attributes.obj_cache={},this.attributes.key_ary=[]},size:function(){return this.attributes.key_ary.length},most_recently_added:function(){return 0===this.size()?null:this.attributes.key_ary[this.attributes.key_ary.length-1]}}),p=v.extend({defaults:l.extend({},v.prototype.defaults,{dataset:null,genome:null,init_data:null,min_region_size:200,filters_manager:null,data_type:"data",data_mode_compatible:function(t,e){return!0},can_subset:function(t){return!1}}),initialize:function(t){v.prototype.initialize.call(this);var e=this.get("init_data");e&&this.add_data(e)},add_data:function(t){this.get("num_elements")<t.length&&this.set("num_elements",t.length);var e=this;l.each(t,function(t){e.set_data(t.region,t)})},data_is_ready:function(){var t=this.get("dataset"),e=$.Deferred(),a="raw_data"===this.get("data_type")?"state":"data"===this.get("data_type")?"converted_datasets_state":"error",n=new _.default.ServerStateDeferred({ajax_settings:{url:this.get("dataset").url(),data:{hda_ldda:t.get("hda_ldda"),data_type:a},dataType:"json"},interval:5e3,success_fn:function(t){return"pending"!==t}});return $.when(n.go()).then(function(t){e.resolve("ok"===t||"data"===t)}),e},search_features:function(t){var e=this.get("dataset"),a={query:t,hda_ldda:e.get("hda_ldda"),data_type:"features"};return $.getJSON(e.url(),a)},load_data:function(t,e,a,n){var i=this.get("dataset"),r={data_type:this.get("data_type"),chrom:t.get("chrom"),low:t.get("start"),high:t.get("end"),mode:e,resolution:a,hda_ldda:i.get("hda_ldda")};$.extend(r,n);var s=this.get("filters_manager");if(s){for(var o=[],d=s.filters,l=0;l<d.length;l++)o.push(d[l].name);r.filter_cols=JSON.stringify(o)}var u=this,_=$.getJSON(i.url(),r,function(e){e.region=t,u.set_data(t,e)});return this.set_data(t,_),_},get_data:function(t,e,a,n){var i=this.get_elt(t);if(i&&(_.default.is_deferred(i)||this.get("data_mode_compatible")(i,e)))return i;for(var r,s,o=this.get("key_ary"),d=this.get("obj_cache"),l=0;l<o.length;l++)if((r=o[l]).contains(t)&&(s=!0,i=d[r.toString()],_.default.is_deferred(i)||this.get("data_mode_compatible")(i,e)&&this.get("can_subset")(i))){if(this.move_key_to_end(r,l),!_.default.is_deferred(i)){var u=this.subset_entry(i,t);this.set_data(t,u),i=u}return i}if(!s&&t.length()<this.attributes.min_region_size){t=t.copy();var c=this.most_recently_added();!c||t.get("start")>c.get("start")?t.set("end",t.get("start")+this.attributes.min_region_size):t.set("start",t.get("end")-this.attributes.min_region_size),t.set("genome",this.attributes.genome),t.trim()}return this.load_data(t,e,a,n)},set_data:function(t,e){this.set_elt(t,e)},DEEP_DATA_REQ:"deep",BROAD_DATA_REQ:"breadth",get_more_data:function(t,e,a,n,i){var r=this._mark_stale(t);{if(r&&this.get("data_mode_compatible")(r,e)){var s=t.get("start");i===this.DEEP_DATA_REQ?$.extend(n,{start_val:r.data.length+1}):i===this.BROAD_DATA_REQ&&(s=(r.max_high?r.max_high:r.data[r.data.length-1][2])+1);var o=t.copy().set("start",s),d=this,l=this.load_data(o,e,a,n),u=$.Deferred();return this.set_data(t,u),$.when(l).then(function(e){e.data&&(e.data=r.data.concat(e.data),e.max_low&&(e.max_low=r.max_low),e.message&&(e.message=e.message.replace(/[0-9]+/,e.data.length))),d.set_data(t,e),u.resolve(e)}),u}console.log("ERROR: problem with getting more data: current data is not compatible")}},can_get_more_detailed_data:function(t){var e=this.get_elt(t);return"bigwig"===e.dataset_type&&e.data.length<8e3},get_more_detailed_data:function(t,e,a,n,i){var r=this._mark_stale(t);{if(r)return i||(i={}),"bigwig"===r.dataset_type&&(i.num_samples=1e3*n),this.load_data(t,e,a,i);console.log("ERROR getting more detailed data: no current data")}},_mark_stale:function(t){var e=this.get_elt(t);return e||console.log("ERROR: no data to mark as stale: ",this.get("dataset"),t.toString()),e.stale=!0,e},get_genome_wide_data:function(t){var e=this,a=!0,n=l.map(t.get("chroms_info").chrom_info,function(t){var n=e.get_elt(new k({chrom:t.chrom,start:0,end:t.len}));return n||(a=!1),n});if(a)return n;var i=$.Deferred();return $.getJSON(this.get("dataset").url(),{data_type:"genome_data"},function(t){e.add_data(t.data),i.resolve(t.data)}),i},subset_entry:function(t,e){var a={bigwig:function(t,e){return l.filter(t,function(t){return t[0]>=e.get("start")&&t[0]<=e.get("end")})},refseq:function(e,a){var n=a.get("start")-t.region.get("start");return t.data.slice(n,n+a.length())}},n=t.data;return!t.region.same(e)&&t.dataset_type in a&&(n=a[t.dataset_type](t.data,e)),{region:e,data:n,dataset_type:t.dataset_type}}}),y=p.extend({initialize:function(t){var e=new Backbone.Model;e.urlRoot=t.data_url,this.set("dataset",e)},load_data:function(t,e,a,n){return t.length()<=1e5?p.prototype.load_data.call(this,t,e,a,n):{data:null,region:t}}}),b=Backbone.Model.extend({defaults:{name:null,key:null,chroms_info:null},initialize:function(t){this.id=t.dbkey},get_chroms_info:function(){return this.attributes.chroms_info.chrom_info},get_chrom_region:function(t){var e=l.find(this.get_chroms_info(),function(e){return e.chrom===t});return new k({chrom:e.chrom,end:e.len})},get_chrom_len:function(t){return l.find(this.get_chroms_info(),function(e){return e.chrom===t}).len}}),k=Backbone.Model.extend({defaults:{chrom:null,start:0,end:0,str_val:null,genome:null},same:function(t){return this.attributes.chrom===t.get("chrom")&&this.attributes.start===t.get("start")&&this.attributes.end===t.get("end")},initialize:function(t){if(t.from_str){var e=t.from_str.split(":"),a=e[0],n=e[1].split("-");this.set({chrom:a,start:parseInt(n[0],10),end:parseInt(n[1],10)})}this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end"),this.on("change",function(){this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end")},this)},copy:function(){return new k({chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")})},length:function(){return this.get("end")-this.get("start")},toString:function(){return this.attributes.str_val},toJSON:function(){return{chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")}},compute_overlap:function(t){var e=this.get("chrom"),a=t.get("chrom"),n=this.get("start"),i=t.get("start"),r=this.get("end"),s=t.get("end");return e&&a&&e!==a?k.overlap_results.DIF_CHROMS:n<i?r<i?k.overlap_results.BEFORE:r<s?k.overlap_results.OVERLAP_START:k.overlap_results.CONTAINS:n>i?n>s?k.overlap_results.AFTER:r<=s?k.overlap_results.CONTAINED_BY:k.overlap_results.OVERLAP_END:r>=s?k.overlap_results.CONTAINS:k.overlap_results.CONTAINED_BY},trim:function(t){if(this.attributes.start<0&&(this.attributes.start=0),this.attributes.genome){var e=this.attributes.genome.get_chrom_len(this.attributes.chrom);this.attributes.end>e&&(this.attributes.end=e-1)}return this},contains:function(t){return this.compute_overlap(t)===k.overlap_results.CONTAINS},overlaps:function(t){return 0===l.intersection([this.compute_overlap(t)],[k.overlap_results.DIF_CHROMS,k.overlap_results.BEFORE,k.overlap_results.AFTER]).length}},{overlap_results:{DIF_CHROMS:1e3,BEFORE:1001,CONTAINS:1002,OVERLAP_START:1003,OVERLAP_END:1004,CONTAINED_BY:1005,AFTER:1006}}),w=Backbone.Collection.extend({model:k}),x=Backbone.Model.extend({defaults:{region:null,note:""},initialize:function(t){this.set("region",new k(t.region))}}),R=Backbone.Collection.extend({model:x}),O=Backbone.Model.extend(f).extend({defaults:{mode:"Auto"},initialize:function(t){this.set("dataset",new u.default.Dataset(t.dataset));var e=[{key:"name",default_value:this.get("dataset").get("name")},{key:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:0},{key:"max_value",label:"Max Value",type:"float",default_value:1}];this.set("config",c.default.ConfigSettingCollection.from_models_and_saved_values(e,t.prefs));var a=this.get("preloaded_data");a=a?a.data:[],this.set("data_manager",new p({dataset:this.get("dataset"),init_data:a}))}},{to_json_keys:["track_type","dataset","prefs","mode","filters","tool_state"],to_json_mappers:{prefs:function(t,e){return 0===l.size(t)&&(t={name:e.get("config").get("name").get("value"),color:e.get("config").get("color").get("value")}),t},dataset:function(t){return{id:t.id,hda_ldda:t.get("hda_ldda")}}}}),A=Backbone.Collection.extend({model:O}),z=Backbone.Model.extend({defaults:{title:"",type:""},urlRoot:Galaxy.root+"api/visualizations",save:function(){return $.ajax({url:this.url(),type:"POST",dataType:"json",data:{vis_json:JSON.stringify(this)}})}}),E=z.extend(f).extend({defaults:l.extend({},z.prototype.defaults,{dbkey:"",drawables:null,bookmarks:null,viewport:null}),initialize:function(t){this.set("drawables",new A(t.tracks));var e=[];this.set("config",c.default.ConfigSettingCollection.from_models_and_saved_values(e,t.prefs)),this.unset("tracks"),this.get("drawables").each(function(t){t.unset("preloaded_data")})},add_tracks:function(t){this.get("drawables").add(t)}},{to_json_keys:["view","viewport","bookmarks"],to_json_mappers:{view:function(t,e){return{obj_type:"View",prefs:{name:e.get("title"),content_visible:!0},drawables:e.get("drawables")}}}}),S=Backbone.Router.extend({initialize:function(t){this.view=t.view,this.route(/([\w]+)$/,"change_location"),this.route(/([\w\+]+\:[\d,]+-[\d,]+)$/,"change_location");var e=this;e.view.on("navigate",function(t){e.navigate(t)})},change_location:function(t){this.view.go_to(t)}});t.default={BackboneTrack:O,BrowserBookmark:x,BrowserBookmarkCollection:R,Cache:v,CanvasManager:m,Genome:b,GenomeDataManager:p,GenomeRegion:k,GenomeRegionCollection:w,GenomeVisualization:E,GenomeReferenceDataManager:y,TrackBrowserRouter:S,Visualization:z,select_datasets:function(t,e){var a=new h.default({url_base:Galaxy.root+"visualization/list_history_datasets",filters:t,dict_format:!0,embedded:!0}),n=new h.default({url_base:Galaxy.root+"visualization/list_library_datasets",dict_format:!0,embedded:!0}),i=new g.default.View;i.add({id:"histories",title:"Histories",$el:$("<div/>").append(a.$el)}),i.add({id:"libraries",title:"Libraries",$el:$("<div/>").append(n.$el)}),Galaxy.modal.show({title:"Select datasets for new tracks",body:i.$el,closing_events:!0,buttons:{Cancel:function(){Galaxy.modal.hide()},Add:function(){var t=[];i.$("input.grid-row-select-checkbox[name=id]:checked").each(function(){window.console.log($(this).val()),t[t.length]=$.ajax({url:Galaxy.root+"api/datasets/"+$(this).val(),dataType:"json",data:{data_type:"track_config",hda_ldda:"histories"==i.current()?"hda":"ldda"}})}),$.when.apply($,t).then(function(){var t=arguments[0]instanceof Array?$.map(arguments,function(t){return t[0]}):[arguments[0]];e(t)}),Galaxy.modal.hide()}}})}}});
\ No newline at end of file
+define("viz/visualization",["exports","utils/localization","libs/underscore","mvc/dataset/data","viz/trackster/util","utils/config","mvc/grid/grid-view","mvc/ui/ui-tabs","mvc/ui/ui-misc"],function(t,e,a,n,i,r,s,o,d){"use strict";function l(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(t,"__esModule",{value:!0});var u=l(e),_=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var a in t)Object.prototype.hasOwnProperty.call(t,a)&&(e[a]=t[a]);return e.default=t,e}(a),c=l(n),h=l(i),g=l(r),f=l(s),m=l(o),v=(l(d),{toJSON:function(){var t=this,e={};return _.each(t.constructor.to_json_keys,function(a){var n=t.get(a);a in t.constructor.to_json_mappers&&(n=t.constructor.to_json_mappers[a](n,t)),e[a]=n}),e}}),p=function(t){this.default_font=void 0!==t?t:"9px Monaco, Lucida Console, monospace",this.dummy_canvas=this.new_canvas(),this.dummy_context=this.dummy_canvas.getContext("2d"),this.dummy_context.font=this.default_font,this.char_width_px=this.dummy_context.measureText("A").width,this.patterns={},this.load_pattern("right_strand","/visualization/strand_right.png"),this.load_pattern("left_strand","/visualization/strand_left.png"),this.load_pattern("right_strand_inv","/visualization/strand_right_inv.png"),this.load_pattern("left_strand_inv","/visualization/strand_left_inv.png")};_.extend(p.prototype,{load_pattern:function(t,e){var a=this.patterns,n=this.dummy_context,i=new Image;i.src=Galaxy.root+"static/images"+e,i.onload=function(){a[t]=n.createPattern(i,"repeat")}},get_pattern:function(t){return this.patterns[t]},new_canvas:function(){var t=$("<canvas/>")[0];return t.manager=this,t}});var y=Backbone.Model.extend({defaults:{num_elements:20,obj_cache:null,key_ary:null},initialize:function(t){this.clear()},get_elt:function(t){var e=this.attributes.obj_cache,a=this.attributes.key_ary,n=t.toString(),i=_.indexOf(a,function(t){return t.toString()===n});return-1!==i&&(e[n].stale?(a.splice(i,1),delete e[n]):this.move_key_to_end(t,i)),e[n]},set_elt:function(t,e){var a=this.attributes.obj_cache,n=this.attributes.key_ary,i=t.toString(),r=this.attributes.num_elements;return a[i]||(n.length>=r&&delete a[n.shift().toString()],n.push(t)),a[i]=e,e},move_key_to_end:function(t,e){this.attributes.key_ary.splice(e,1),this.attributes.key_ary.push(t)},clear:function(){this.attributes.obj_cache={},this.attributes.key_ary=[]},size:function(){return this.attributes.key_ary.length},most_recently_added:function(){return 0===this.size()?null:this.attributes.key_ary[this.attributes.key_ary.length-1]}}),b=y.extend({defaults:_.extend({},y.prototype.defaults,{dataset:null,genome:null,init_data:null,min_region_size:200,filters_manager:null,data_type:"data",data_mode_compatible:function(t,e){return!0},can_subset:function(t){return!1}}),initialize:function(t){y.prototype.initialize.call(this);var e=this.get("init_data");e&&this.add_data(e)},add_data:function(t){this.get("num_elements")<t.length&&this.set("num_elements",t.length);var e=this;_.each(t,function(t){e.set_data(t.region,t)})},data_is_ready:function(){var t=this.get("dataset"),e=$.Deferred(),a="raw_data"===this.get("data_type")?"state":"data"===this.get("data_type")?"converted_datasets_state":"error",n=new h.default.ServerStateDeferred({ajax_settings:{url:this.get("dataset").url(),data:{hda_ldda:t.get("hda_ldda"),data_type:a},dataType:"json"},interval:5e3,success_fn:function(t){return"pending"!==t}});return $.when(n.go()).then(function(t){e.resolve("ok"===t||"data"===t)}),e},search_features:function(t){var e=this.get("dataset"),a={query:t,hda_ldda:e.get("hda_ldda"),data_type:"features"};return $.getJSON(e.url(),a)},load_data:function(t,e,a,n){var i=this.get("dataset"),r={data_type:this.get("data_type"),chrom:t.get("chrom"),low:t.get("start"),high:t.get("end"),mode:e,resolution:a,hda_ldda:i.get("hda_ldda")};$.extend(r,n);var s=this.get("filters_manager");if(s){for(var o=[],d=s.filters,l=0;l<d.length;l++)o.push(d[l].name);r.filter_cols=JSON.stringify(o)}var u=this,_=$.getJSON(i.url(),r,function(e){e.region=t,u.set_data(t,e)});return this.set_data(t,_),_},get_data:function(t,e,a,n){var i=this.get_elt(t);if(i&&(h.default.is_deferred(i)||this.get("data_mode_compatible")(i,e)))return i;for(var r,s,o=this.get("key_ary"),d=this.get("obj_cache"),l=0;l<o.length;l++)if((r=o[l]).contains(t)&&(s=!0,i=d[r.toString()],h.default.is_deferred(i)||this.get("data_mode_compatible")(i,e)&&this.get("can_subset")(i))){if(this.move_key_to_end(r,l),!h.default.is_deferred(i)){var u=this.subset_entry(i,t);this.set_data(t,u),i=u}return i}if(!s&&t.length()<this.attributes.min_region_size){t=t.copy();var _=this.most_recently_added();!_||t.get("start")>_.get("start")?t.set("end",t.get("start")+this.attributes.min_region_size):t.set("start",t.get("end")-this.attributes.min_region_size),t.set("genome",this.attributes.genome),t.trim()}return this.load_data(t,e,a,n)},set_data:function(t,e){this.set_elt(t,e)},DEEP_DATA_REQ:"deep",BROAD_DATA_REQ:"breadth",get_more_data:function(t,e,a,n,i){var r=this._mark_stale(t);{if(r&&this.get("data_mode_compatible")(r,e)){var s=t.get("start");i===this.DEEP_DATA_REQ?$.extend(n,{start_val:r.data.length+1}):i===this.BROAD_DATA_REQ&&(s=(r.max_high?r.max_high:r.data[r.data.length-1][2])+1);var o=t.copy().set("start",s),d=this,l=this.load_data(o,e,a,n),u=$.Deferred();return this.set_data(t,u),$.when(l).then(function(e){e.data&&(e.data=r.data.concat(e.data),e.max_low&&(e.max_low=r.max_low),e.message&&(e.message=e.message.replace(/[0-9]+/,e.data.length))),d.set_data(t,e),u.resolve(e)}),u}console.log("ERROR: problem with getting more data: current data is not compatible")}},can_get_more_detailed_data:function(t){var e=this.get_elt(t);return"bigwig"===e.dataset_type&&e.data.length<8e3},get_more_detailed_data:function(t,e,a,n,i){var r=this._mark_stale(t);{if(r)return i||(i={}),"bigwig"===r.dataset_type&&(i.num_samples=1e3*n),this.load_data(t,e,a,i);console.log("ERROR getting more detailed data: no current data")}},_mark_stale:function(t){var e=this.get_elt(t);return e||console.log("ERROR: no data to mark as stale: ",this.get("dataset"),t.toString()),e.stale=!0,e},get_genome_wide_data:function(t){var e=this,a=!0,n=_.map(t.get("chroms_info").chrom_info,function(t){var n=e.get_elt(new x({chrom:t.chrom,start:0,end:t.len}));return n||(a=!1),n});if(a)return n;var i=$.Deferred();return $.getJSON(this.get("dataset").url(),{data_type:"genome_data"},function(t){e.add_data(t.data),i.resolve(t.data)}),i},subset_entry:function(t,e){var a={bigwig:function(t,e){return _.filter(t,function(t){return t[0]>=e.get("start")&&t[0]<=e.get("end")})},refseq:function(e,a){var n=a.get("start")-t.region.get("start");return t.data.slice(n,n+a.length())}},n=t.data;return!t.region.same(e)&&t.dataset_type in a&&(n=a[t.dataset_type](t.data,e)),{region:e,data:n,dataset_type:t.dataset_type}}}),k=b.extend({initialize:function(t){var e=new Backbone.Model;e.urlRoot=t.data_url,this.set("dataset",e)},load_data:function(t,e,a,n){return t.length()<=1e5?b.prototype.load_data.call(this,t,e,a,n):{data:null,region:t}}}),w=Backbone.Model.extend({defaults:{name:null,key:null,chroms_info:null},initialize:function(t){this.id=t.dbkey},get_chroms_info:function(){return this.attributes.chroms_info.chrom_info},get_chrom_region:function(t){var e=_.find(this.get_chroms_info(),function(e){return e.chrom===t});return new x({chrom:e.chrom,end:e.len})},get_chrom_len:function(t){return _.find(this.get_chroms_info(),function(e){return e.chrom===t}).len}}),x=Backbone.Model.extend({defaults:{chrom:null,start:0,end:0,str_val:null,genome:null},same:function(t){return this.attributes.chrom===t.get("chrom")&&this.attributes.start===t.get("start")&&this.attributes.end===t.get("end")},initialize:function(t){if(t.from_str){var e=t.from_str.split(":"),a=e[0],n=e[1].split("-");this.set({chrom:a,start:parseInt(n[0],10),end:parseInt(n[1],10)})}this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end"),this.on("change",function(){this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end")},this)},copy:function(){return new x({chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")})},length:function(){return this.get("end")-this.get("start")},toString:function(){return this.attributes.str_val},toJSON:function(){return{chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")}},compute_overlap:function(t){var e=this.get("chrom"),a=t.get("chrom"),n=this.get("start"),i=t.get("start"),r=this.get("end"),s=t.get("end");return e&&a&&e!==a?x.overlap_results.DIF_CHROMS:n<i?r<i?x.overlap_results.BEFORE:r<s?x.overlap_results.OVERLAP_START:x.overlap_results.CONTAINS:n>i?n>s?x.overlap_results.AFTER:r<=s?x.overlap_results.CONTAINED_BY:x.overlap_results.OVERLAP_END:r>=s?x.overlap_results.CONTAINS:x.overlap_results.CONTAINED_BY},trim:function(t){if(this.attributes.start<0&&(this.attributes.start=0),this.attributes.genome){var e=this.attributes.genome.get_chrom_len(this.attributes.chrom);this.attributes.end>e&&(this.attributes.end=e-1)}return this},contains:function(t){return this.compute_overlap(t)===x.overlap_results.CONTAINS},overlaps:function(t){return 0===_.intersection([this.compute_overlap(t)],[x.overlap_results.DIF_CHROMS,x.overlap_results.BEFORE,x.overlap_results.AFTER]).length}},{overlap_results:{DIF_CHROMS:1e3,BEFORE:1001,CONTAINS:1002,OVERLAP_START:1003,OVERLAP_END:1004,CONTAINED_BY:1005,AFTER:1006}}),R=Backbone.Collection.extend({model:x}),O=Backbone.Model.extend({defaults:{region:null,note:""},initialize:function(t){this.set("region",new x(t.region))}}),z=Backbone.Collection.extend({model:O}),A=Backbone.Model.extend(v).extend({defaults:{mode:"Auto"},initialize:function(t){this.set("dataset",new c.default.Dataset(t.dataset));var e=[{key:"name",default_value:this.get("dataset").get("name")},{key:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:0},{key:"max_value",label:"Max Value",type:"float",default_value:1}];this.set("config",g.default.ConfigSettingCollection.from_models_and_saved_values(e,t.prefs));var a=this.get("preloaded_data");a=a?a.data:[],this.set("data_manager",new b({dataset:this.get("dataset"),init_data:a}))}},{to_json_keys:["track_type","dataset","prefs","mode","filters","tool_state"],to_json_mappers:{prefs:function(t,e){return 0===_.size(t)&&(t={name:e.get("config").get("name").get("value"),color:e.get("config").get("color").get("value")}),t},dataset:function(t){return{id:t.id,hda_ldda:t.get("hda_ldda")}}}}),E=Backbone.Collection.extend({model:A}),S=Backbone.Model.extend({defaults:{title:"",type:""},urlRoot:Galaxy.root+"api/visualizations",save:function(){return $.ajax({url:this.url(),type:"POST",dataType:"json",data:{vis_json:JSON.stringify(this)}})}}),B=S.extend(v).extend({defaults:_.extend({},S.prototype.defaults,{dbkey:"",drawables:null,bookmarks:null,viewport:null}),initialize:function(t){this.set("drawables",new E(t.tracks));var e=[];this.set("config",g.default.ConfigSettingCollection.from_models_and_saved_values(e,t.prefs)),this.unset("tracks"),this.get("drawables").each(function(t){t.unset("preloaded_data")})},add_tracks:function(t){this.get("drawables").add(t)}},{to_json_keys:["view","viewport","bookmarks"],to_json_mappers:{view:function(t,e){return{obj_type:"View",prefs:{name:e.get("title"),content_visible:!0},drawables:e.get("drawables")}}}}),T=Backbone.Router.extend({initialize:function(t){this.view=t.view,this.route(/([\w]+)$/,"change_location"),this.route(/([\w\+]+\:[\d,]+-[\d,]+)$/,"change_location");var e=this;e.view.on("navigate",function(t){e.navigate(t)})},change_location:function(t){this.view.go_to(t)}});t.default={BackboneTrack:A,BrowserBookmark:O,BrowserBookmarkCollection:z,Cache:y,CanvasManager:p,Genome:w,GenomeDataManager:b,GenomeRegion:x,GenomeRegionCollection:R,GenomeVisualization:B,GenomeReferenceDataManager:k,TrackBrowserRouter:T,Visualization:S,select_datasets:function(t,e){var a=new f.default({url_base:Galaxy.root+"visualization/list_history_datasets",filters:t,dict_format:!0,embedded:!0}),n=new f.default({url_base:Galaxy.root+"visualization/list_library_datasets",dict_format:!0,embedded:!0}),i=new m.default.View;i.add({id:"histories",title:(0,u.default)("Histories"),$el:$("<div/>").append(a.$el)}),i.add({id:"libraries",title:(0,u.default)("Libraries"),$el:$("<div/>").append(n.$el)}),Galaxy.modal.show({title:(0,u.default)("Select datasets for new tracks"),body:i.$el,closing_events:!0,buttons:{Cancel:function(){Galaxy.modal.hide()},Add:function(){var t=[];i.$("input.grid-row-select-checkbox[name=id]:checked").each(function(){window.console.log($(this).val()),t[t.length]=$.ajax({url:Galaxy.root+"api/datasets/"+$(this).val(),dataType:"json",data:{data_type:"track_config",hda_ldda:"histories"==i.current()?"hda":"ldda"}})}),$.when.apply($,t).then(function(){var t=arguments[0]instanceof Array?$.map(arguments,function(t){return t[0]}):[arguments[0]];e(t)}),Galaxy.modal.hide()}}})}}});
\ No newline at end of file