diff --git a/lib/galaxy/model/custom_types.py b/lib/galaxy/model/custom_types.py index 408eac2442c..f537a93f463 100644 --- a/lib/galaxy/model/custom_types.py +++ b/lib/galaxy/model/custom_types.py @@ -2,6 +2,7 @@ from sqlalchemy.types import * import simplejson import pickle from galaxy.util.bunch import Bunch +from galaxy.util.aliaspickler import AliasPickleModule class JSONType( TypeDecorator ): """ @@ -41,13 +42,17 @@ class JSONType( TypeDecorator ): def is_mutable( self ): return self.mutable +MetadataPickler = AliasPickleModule( { + ( "cookbook.patterns", "Bunch" ) : ( "galaxy.util.bunch" , "Bunch" ) +} ) + class MetadataType( JSONType ): """ Mixture between JSONType and PickleType...can read in either, and writes JSON. """ - def __init__( self, pickler=None, jsonifyer=None, mutable=True ): + def __init__( self, pickler=MetadataPickler, jsonifyer=None, mutable=True ): self.jsonifyer = jsonifyer or simplejson self.pickler = pickler or pickle self.mutable = mutable diff --git a/lib/galaxy/model/mapping.py b/lib/galaxy/model/mapping.py index 5de3ee2c74a..bfbed5553ff 100644 --- a/lib/galaxy/model/mapping.py +++ b/lib/galaxy/model/mapping.py @@ -20,11 +20,6 @@ from sqlalchemy import * from galaxy.model import * from galaxy.model.custom_types import * from galaxy.util.bunch import Bunch -from galaxy.util.aliaspickler import AliasPickleModule - -MetaPickler = AliasPickleModule( { - ("cookbook.patterns","Bunch"):("galaxy.util.bunch","Bunch") - } ) metadata = DynamicMetaData( threadlocal=False ) context = SessionContext( create_session ) @@ -68,7 +63,7 @@ Dataset.table = Table( "dataset", metadata, Column( "extension", TrimmedString( 64 ) ), Column( "dbkey", TrimmedString( 64 ), key="old_dbkey" ), # maps to old_dbkey, see __init__.py Column( "state", TrimmedString( 64 ) ), - Column( "metadata", MetadataType(pickler=MetaPickler), key="_metadata" ), + Column( "metadata", MetadataType(), key="_metadata" ), Column( "parent_id", Integer, nullable=True ), Column( "designation", TrimmedString( 255 ) ), Column( "deleted", Boolean ),