diff --git a/tools/regVariation/best_regression_subsets.xml b/tools/regVariation/best_regression_subsets.xml
index bf382f86cb7..84c3e3ddf3e 100644
--- a/tools/regVariation/best_regression_subsets.xml
+++ b/tools/regVariation/best_regression_subsets.xml
@@ -13,7 +13,9 @@
-
+
+
+
diff --git a/tools/regVariation/getIndels.py b/tools/regVariation/getIndels.py
index 81bbb975038..d18b12e912c 100644
--- a/tools/regVariation/getIndels.py
+++ b/tools/regVariation/getIndels.py
@@ -1,7 +1,7 @@
#!/usr/bin/python
"""
-Estimate INDELs for pait-wise alignments.
+Estimate INDELs for pair-wise alignments.
usage: %prog maf_input out_file1 out_file2
"""
@@ -10,22 +10,10 @@ from __future__ import division
from galaxy import eggs
import pkg_resources
pkg_resources.require( "bx-python" )
-pkg_resources.require( "lrucache" )
-try:
- pkg_resources.require("numpy")
- pkg_resources.require( "python-lzo" )
-except:
- pass
+pkg_resources.require("numpy")
import psyco_full
import sys
-import os, os.path
-from UserDict import DictMixin
-import bx.wiggle
-from bx.binned_array import BinnedArray, FileBinnedArray
-from bx.bitset import *
-from bx.bitset_builders import *
-from fpconst import isNaN
from bx.cookbook import doc_optparse
from galaxy.tools.exception_handling import *
import bx.align.maf
diff --git a/tools/regVariation/linear_regression.xml b/tools/regVariation/linear_regression.xml
index d4fc74a1271..75c0da55556 100644
--- a/tools/regVariation/linear_regression.xml
+++ b/tools/regVariation/linear_regression.xml
@@ -12,7 +12,9 @@
-
+
+
+
diff --git a/tools/regVariation/quality_filter.py b/tools/regVariation/quality_filter.py
index d77a296861d..9e0cb06a25f 100644
--- a/tools/regVariation/quality_filter.py
+++ b/tools/regVariation/quality_filter.py
@@ -12,11 +12,7 @@ from galaxy import eggs
import pkg_resources
pkg_resources.require( "bx-python" )
pkg_resources.require( "lrucache" )
-try:
- pkg_resources.require("numpy")
- pkg_resources.require( "python-lzo" )
-except:
- pass
+pkg_resources.require("numpy")
import psyco_full
import sys
diff --git a/tools/regVariation/rcve.xml b/tools/regVariation/rcve.xml
index 7fe82e92aca..1d1903cc114 100644
--- a/tools/regVariation/rcve.xml
+++ b/tools/regVariation/rcve.xml
@@ -11,7 +11,9 @@
-
+
+
+