From 51943d49623cc808ede1b4f3ca537b3c86ca1d13 Mon Sep 17 00:00:00 2001 From: Carl Eberhard Date: Fri, 20 Mar 2015 12:39:20 -0400 Subject: [PATCH 1/5] UI, Collections: rename badly named paired collection creator, begin moving other creators out to add functionality --- .../mvc/collection/list-collection-creator.js | 27 +++++++++++++++++++ ...js => list-of-pairs-collection-creator.js} | 0 .../scripts/mvc/history/history-panel-edit.js | 20 +++----------- .../mvc/history/history-panel-edit.js.map | 2 +- .../scripts/mvc/history/history-panel-edit.js | 2 +- 5 files changed, 32 insertions(+), 19 deletions(-) create mode 100644 client/galaxy/scripts/mvc/collection/list-collection-creator.js rename client/galaxy/scripts/mvc/collection/{paired-collection-creator.js => list-of-pairs-collection-creator.js} (100%) diff --git a/client/galaxy/scripts/mvc/collection/list-collection-creator.js b/client/galaxy/scripts/mvc/collection/list-collection-creator.js new file mode 100644 index 00000000000..af376947c77 --- /dev/null +++ b/client/galaxy/scripts/mvc/collection/list-collection-creator.js @@ -0,0 +1,27 @@ +define([ + "mvc/collection/collection-model", + "utils/localization" +], function( DC_MODEL, _l ){ +/*============================================================================== +==============================================================================*/ +function createListCollection( collection ){ + //TODO: filter out non-datasets, non-ready + //TODO: fail if no valid elements remain + //return jQuery.Deferred().reject( _l( 'No valid datasets to add' ) ); + var name = 'New Dataset List', + elementIdentifiers = collection.toJSON().map( function( element ){ + // TODO: Handle duplicate names. + return { + id : element.id, + name : element.name, + src : ( element.history_content_type === 'dataset'? 'hda' : 'hdca' ) + } + }); + return collection.createHDCA( elementIdentifiers, 'list', name ); +} + +//============================================================================== + return { + createListCollection : createListCollection + }; +}); diff --git a/client/galaxy/scripts/mvc/collection/paired-collection-creator.js b/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js similarity index 100% rename from client/galaxy/scripts/mvc/collection/paired-collection-creator.js rename to client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js diff --git a/client/galaxy/scripts/mvc/history/history-panel-edit.js b/client/galaxy/scripts/mvc/history/history-panel-edit.js index bf7d1fa23c2..35e15068c61 100644 --- a/client/galaxy/scripts/mvc/history/history-panel-edit.js +++ b/client/galaxy/scripts/mvc/history/history-panel-edit.js @@ -7,6 +7,7 @@ define([ "mvc/history/hdca-li-edit", "mvc/tags", "mvc/annotations", + "mvc/collection/list-collection-creator", "ui/fa-icon-button", "mvc/ui/popup-menu", "utils/localization" @@ -19,6 +20,7 @@ define([ HDCA_LI_EDIT, TAGS, ANNOTATIONS, + LIST_COLLECTION_CREATOR, faIconButton, PopupMenu, _l @@ -27,22 +29,6 @@ define([ TODO: ============================================================================= */ -function createListCollection( history, collection ){ - //TODO: filter out non-datasets, non-ready - //TODO: fail if no valid elements remain - //return jQuery.Deferred().reject( _l( 'No valid datasets to add' ) ); - var name = 'New Dataset List', - elementIdentifiers = collection.toJSON().map( function( element ){ - // TODO: Handle duplicate names. - return { - id : element.id, - name : element.name, - src : ( element.history_content_type === 'dataset'? 'hda' : 'hdca' ) - } - }); - return collection.createHDCA( elementIdentifiers, 'list', name ); -} - function createPairCollection( history, collection ){ //TODO: filter out non-datasets, non-ready //TODO: fail if no valid elements remain @@ -331,7 +317,7 @@ var HistoryPanelEdit = _super.extend( } return actions.concat([ { html: _l( 'Build Dataset List' ), func: function() { - createListCollection( panel.model, panel.getSelectedModels() ) + LIST_COLLECTION_CREATOR.createListCollection( panel.getSelectedModels() ) .done( function(){ panel.model.refresh() }); } }, diff --git a/static/maps/mvc/history/history-panel-edit.js.map b/static/maps/mvc/history/history-panel-edit.js.map index a93cc930e55..3a1ba564ead 100644 --- a/static/maps/mvc/history/history-panel-edit.js.map +++ b/static/maps/mvc/history/history-panel-edit.js.map @@ -1 +1 @@ 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\ No newline at end of file diff --git a/static/scripts/mvc/history/history-panel-edit.js b/static/scripts/mvc/history/history-panel-edit.js index c211a31e135..af11f7fb2b6 100644 --- a/static/scripts/mvc/history/history-panel-edit.js +++ b/static/scripts/mvc/history/history-panel-edit.js @@ -1,2 +1,2 @@ -define(["mvc/history/history-panel","mvc/history/history-contents","mvc/dataset/states","mvc/history/hda-model","mvc/history/hda-li-edit","mvc/history/hdca-li-edit","mvc/tags","mvc/annotations","ui/fa-icon-button","mvc/ui/popup-menu","utils/localization"],function(a,b,c,d,e,f,g,h,i,j,k){function l(a,b){var c="New Dataset List",d=b.toJSON().map(function(a){return{id:a.id,name:a.name,src:"dataset"===a.history_content_type?"hda":"hdca"}});return b.createHDCA(d,"list",c)}function m(a,b){var c=b.toJSON(),d="New Dataset Pair",e=[{name:"forward",src:"hda",id:c[0].id},{name:"reverse",src:"hda",id:c[1].id}];return b.createHDCA(e,"paired",d)}function n(a,b){var d=b.toJSON().filter(function(a){return"dataset"===a.history_content_type&&a.state===c.OK});d.length?require(["mvc/collection/paired-collection-creator"],function(b){window.creator=b.pairedCollectionCreatorModal(d,{historyId:a.id})}):Galaxy.modal.show({title:k("No valid datasets were selected"),body:k(["Use the checkboxes at the left of the dataset names to select them.","Selected datasets should be error-free and should have completed running."].join(" ")),buttons:{Ok:function(){Galaxy.modal.hide()}},closing_events:!0})}var o=a.HistoryPanel,p=o.extend({HDAViewClass:e.HDAListItemEdit,HDCAViewClass:f.HDCAListItemEdit,initialize:function(a){a=a||{},o.prototype.initialize.call(this,a),this.tagsEditor=null,this.annotationEditor=null,this.purgeAllowed=a.purgeAllowed||!1,this.annotationEditorShown=a.annotationEditorShown||!1,this.tagsEditorShown=a.tagsEditorShown||!1},_setUpListeners:function(){var a=this;o.prototype._setUpListeners.call(a),a.on("drop",function(b,c){a.dataDropped(c),a.dropTargetOff()}),a.on("view:attached view:removed",function(){a._renderCounts()},a)},_setUpCollectionListeners:function(){return o.prototype._setUpCollectionListeners.call(this),this.collection.on("change:deleted",this._handleHdaDeletionChange,this),this.collection.on("change:visible",this._handleHdaVisibleChange,this),this.collection.on("change:purged",function(){this.model.fetch()},this),this},_setUpModelListeners:function(){return o.prototype._setUpModelListeners.call(this),this.model.on("change:nice_size",this.updateHistoryDiskSize,this),this},_buildNewRender:function(){var a=o.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")&&(this._renderTags(a),this._renderAnnotation(a)),a):a},renderItems:function(a){var b=o.prototype.renderItems.call(this,a);return this._renderCounts(a),b},_renderCounts:function(a){function b(a,b){return['',b,""].join("")}a=a||this.$el;var c=this.collection.where({deleted:!0}),d=this.collection.where({visible:!1}),e=[];return this.views.length&&e.push([this.views.length,k("shown")].join(" ")),c.length&&e.push(this.showDeleted?b("toggle-deleted-link",k("hide deleted")):[c.length,b("toggle-deleted-link",k("deleted"))].join(" ")),d.length&&e.push(this.showHidden?b("toggle-hidden-link",k("hide hidden")):[d.length,b("toggle-hidden-link",k("hidden"))].join(" ")),a.find("> .controls .subtitle").html(e.join(", "))},_renderTags:function(a){var b=this;this.tagsEditor=new g.TagsEditor({model:this.model,el:a.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDATagEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDATagEditors(!1,b.fxSpeed)},$activator:i({title:k("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(a.find(".controls .actions"))})},_renderAnnotation:function(a){var b=this;this.annotationEditor=new h.AnnotationEditor({model:this.model,el:a.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDAAnnotationEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDAAnnotationEditors(!1,b.fxSpeed)},$activator:i({title:k("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(a.find(".controls .actions"))})},_setUpBehaviors:function(a){if(a=a||this.$el,o.prototype._setUpBehaviors.call(this,a),this.model&&Galaxy.currUser&&!Galaxy.currUser.isAnonymous()&&Galaxy.currUser.id===this.model.get("user_id")){var b=this,c="> .controls .name";a.find(c).attr("title",k("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(a){var d=b.model.get("name");a&&a!==d?(b.$el.find(c).text(a),b.model.save({name:a}).fail(function(){b.$el.find(c).text(b.model.previous("name"))})):b.$el.find(c).text(d)}})}},multiselectActions:function(){var a=this,b=[{html:k("Hide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.hide;a.getSelectedModels().ajaxQueue(b)}},{html:k("Unhide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.unhide;a.getSelectedModels().ajaxQueue(b)}},{html:k("Delete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.delete;a.getSelectedModels().ajaxQueue(b)}},{html:k("Undelete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.undelete;a.getSelectedModels().ajaxQueue(b)}}];return a.purgeAllowed&&b.push({html:k("Permanently delete datasets"),func:function(){if(confirm(k("This will permanently remove the data in your datasets. Are you sure?"))){var b=d.HistoryDatasetAssociation.prototype.purge;a.getSelectedModels().ajaxQueue(b)}}}),b.concat([{html:k("Build Dataset List"),func:function(){l(a.model,a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:k("Build Dataset Pair"),func:function(){m(a.model,a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:k("Build List of Dataset Pairs"),func:function(){n(a.model,a.getSelectedModels())}}])},_attachItems:function(a){return this.$list(a).append(this.views.reverse().map(function(a){return a.$el})),this},_attachView:function(a){var b=this;b.views.unshift(a),b.$list().prepend(a.render(0).$el.hide()),b.trigger("view:attached",a),a.$el.slideDown(b.fxSpeed,function(){b.trigger("view:attached:rendered")})},_getItemViewOptions:function(a){var b=o.prototype._getItemViewOptions.call(this,a);return _.extend(b,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),b},_handleHdaDeletionChange:function(a){a.get("deleted")&&!this.showDeleted&&this.removeItemView(a),this._renderCounts()},_handleHdaVisibleChange:function(a){a.hidden()&&!this.storage.showHidden&&this.removeItemView(a),this._renderCounts()},toggleHDATagEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.tagsEditor&&b.tagsEditor.toggle.apply(b.tagsEditor,a)})},toggleHDAAnnotationEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.annotationEditor&&b.annotationEditor.toggle.apply(b.annotationEditor,a)})},events:_.extend(_.clone(o.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(){this.toggleShowDeleted()},"click .toggle-hidden-link":function(){this.toggleShowHidden()}}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var a={dragenter:_.bind(this.dragenter,this),dragover:_.bind(this.dragover,this),dragleave:_.bind(this.dragleave,this),drop:_.bind(this.drop,this)},b=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),b]);for(var c in a)a.hasOwnProperty(c)&&b.on(c,a[c]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),$("
").addClass("history-drop-target").css({height:"64px",margin:"0px 10px 10px 10px",border:"1px dashed black","border-radius":"3px"})},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),$("
").addClass("history-drop-target-help").css({margin:"10px 10px 4px 10px",color:"grey","font-size":"80%","font-style":"italic"}).text(k("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var a=this.$(".history-drop-target").get(0);for(var b in this._dropHandlers)this._dropHandlers.hasOwnProperty(b)&&(console.debug(b,this._dropHandlers[b]),a.off(b,this._dropHandlers[b]));return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(a){a.preventDefault(),a.stopPropagation()},dragleave:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(a){a.preventDefault(),a.dataTransfer.dropEffect="move";var b=this,c=a.dataTransfer.getData("text");try{c=JSON.parse(c)}catch(d){this.warn("error parsing JSON from drop:",c)}return this.trigger("droptarget:drop",a,c,b),!1},dataDropped:function(a){var b=this;return _.isObject(a)&&"HistoryDatasetAssociation"===a.model_class&&a.id?b.model.contents.copy(a.id):jQuery.when()},toString:function(){return"HistoryPanelEdit("+(this.model?this.model.get("name"):"")+")"}});return{HistoryPanelEdit:p}}); +define(["mvc/history/history-panel","mvc/history/history-contents","mvc/dataset/states","mvc/history/hda-model","mvc/history/hda-li-edit","mvc/history/hdca-li-edit","mvc/tags","mvc/annotations","mvc/collection/list-collection-creator","ui/fa-icon-button","mvc/ui/popup-menu","utils/localization"],function(a,b,c,d,e,f,g,h,i,j,k,l){function m(a,b){var c=b.toJSON(),d="New Dataset Pair",e=[{name:"forward",src:"hda",id:c[0].id},{name:"reverse",src:"hda",id:c[1].id}];return b.createHDCA(e,"paired",d)}function n(a,b){var d=b.toJSON().filter(function(a){return"dataset"===a.history_content_type&&a.state===c.OK});d.length?require(["mvc/collection/paired-collection-creator"],function(b){window.creator=b.pairedCollectionCreatorModal(d,{historyId:a.id})}):Galaxy.modal.show({title:l("No valid datasets were selected"),body:l(["Use the checkboxes at the left of the dataset names to select them.","Selected datasets should be error-free and should have completed running."].join(" ")),buttons:{Ok:function(){Galaxy.modal.hide()}},closing_events:!0})}var o=a.HistoryPanel,p=o.extend({HDAViewClass:e.HDAListItemEdit,HDCAViewClass:f.HDCAListItemEdit,initialize:function(a){a=a||{},o.prototype.initialize.call(this,a),this.tagsEditor=null,this.annotationEditor=null,this.purgeAllowed=a.purgeAllowed||!1,this.annotationEditorShown=a.annotationEditorShown||!1,this.tagsEditorShown=a.tagsEditorShown||!1},_setUpListeners:function(){var a=this;o.prototype._setUpListeners.call(a),a.on("drop",function(b,c){a.dataDropped(c),a.dropTargetOff()}),a.on("view:attached view:removed",function(){a._renderCounts()},a)},_setUpCollectionListeners:function(){return o.prototype._setUpCollectionListeners.call(this),this.collection.on("change:deleted",this._handleHdaDeletionChange,this),this.collection.on("change:visible",this._handleHdaVisibleChange,this),this.collection.on("change:purged",function(){this.model.fetch()},this),this},_setUpModelListeners:function(){return o.prototype._setUpModelListeners.call(this),this.model.on("change:nice_size",this.updateHistoryDiskSize,this),this},_buildNewRender:function(){var a=o.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")&&(this._renderTags(a),this._renderAnnotation(a)),a):a},renderItems:function(a){var b=o.prototype.renderItems.call(this,a);return this._renderCounts(a),b},_renderCounts:function(a){function b(a,b){return['',b,""].join("")}a=a||this.$el;var c=this.collection.where({deleted:!0}),d=this.collection.where({visible:!1}),e=[];return this.views.length&&e.push([this.views.length,l("shown")].join(" ")),c.length&&e.push(this.showDeleted?b("toggle-deleted-link",l("hide deleted")):[c.length,b("toggle-deleted-link",l("deleted"))].join(" ")),d.length&&e.push(this.showHidden?b("toggle-hidden-link",l("hide hidden")):[d.length,b("toggle-hidden-link",l("hidden"))].join(" ")),a.find("> .controls .subtitle").html(e.join(", "))},_renderTags:function(a){var b=this;this.tagsEditor=new g.TagsEditor({model:this.model,el:a.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDATagEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDATagEditors(!1,b.fxSpeed)},$activator:j({title:l("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(a.find(".controls .actions"))})},_renderAnnotation:function(a){var b=this;this.annotationEditor=new h.AnnotationEditor({model:this.model,el:a.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDAAnnotationEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDAAnnotationEditors(!1,b.fxSpeed)},$activator:j({title:l("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(a.find(".controls .actions"))})},_setUpBehaviors:function(a){if(a=a||this.$el,o.prototype._setUpBehaviors.call(this,a),this.model&&Galaxy.currUser&&!Galaxy.currUser.isAnonymous()&&Galaxy.currUser.id===this.model.get("user_id")){var b=this,c="> .controls .name";a.find(c).attr("title",l("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(a){var d=b.model.get("name");a&&a!==d?(b.$el.find(c).text(a),b.model.save({name:a}).fail(function(){b.$el.find(c).text(b.model.previous("name"))})):b.$el.find(c).text(d)}})}},multiselectActions:function(){var a=this,b=[{html:l("Hide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.hide;a.getSelectedModels().ajaxQueue(b)}},{html:l("Unhide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.unhide;a.getSelectedModels().ajaxQueue(b)}},{html:l("Delete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.delete;a.getSelectedModels().ajaxQueue(b)}},{html:l("Undelete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.undelete;a.getSelectedModels().ajaxQueue(b)}}];return a.purgeAllowed&&b.push({html:l("Permanently delete datasets"),func:function(){if(confirm(l("This will permanently remove the data in your datasets. Are you sure?"))){var b=d.HistoryDatasetAssociation.prototype.purge;a.getSelectedModels().ajaxQueue(b)}}}),b.concat([{html:l("Build Dataset List"),func:function(){i.createListCollection(a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:l("Build Dataset Pair"),func:function(){m(a.model,a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:l("Build List of Dataset Pairs"),func:function(){n(a.model,a.getSelectedModels())}}])},_attachItems:function(a){return this.$list(a).append(this.views.reverse().map(function(a){return a.$el})),this},_attachView:function(a){var b=this;b.views.unshift(a),b.$list().prepend(a.render(0).$el.hide()),b.trigger("view:attached",a),a.$el.slideDown(b.fxSpeed,function(){b.trigger("view:attached:rendered")})},_getItemViewOptions:function(a){var b=o.prototype._getItemViewOptions.call(this,a);return _.extend(b,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),b},_handleHdaDeletionChange:function(a){a.get("deleted")&&!this.showDeleted&&this.removeItemView(a),this._renderCounts()},_handleHdaVisibleChange:function(a){a.hidden()&&!this.storage.showHidden&&this.removeItemView(a),this._renderCounts()},toggleHDATagEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.tagsEditor&&b.tagsEditor.toggle.apply(b.tagsEditor,a)})},toggleHDAAnnotationEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.annotationEditor&&b.annotationEditor.toggle.apply(b.annotationEditor,a)})},events:_.extend(_.clone(o.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(){this.toggleShowDeleted()},"click .toggle-hidden-link":function(){this.toggleShowHidden()}}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var a={dragenter:_.bind(this.dragenter,this),dragover:_.bind(this.dragover,this),dragleave:_.bind(this.dragleave,this),drop:_.bind(this.drop,this)},b=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),b]);for(var c in a)a.hasOwnProperty(c)&&b.on(c,a[c]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),$("
").addClass("history-drop-target").css({height:"64px",margin:"0px 10px 10px 10px",border:"1px dashed black","border-radius":"3px"})},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),$("
").addClass("history-drop-target-help").css({margin:"10px 10px 4px 10px",color:"grey","font-size":"80%","font-style":"italic"}).text(l("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var a=this.$(".history-drop-target").get(0);for(var b in this._dropHandlers)this._dropHandlers.hasOwnProperty(b)&&(console.debug(b,this._dropHandlers[b]),a.off(b,this._dropHandlers[b]));return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(a){a.preventDefault(),a.stopPropagation()},dragleave:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed 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\ No newline at end of file diff --git a/static/scripts/mvc/collection/list-collection-creator.js b/static/scripts/mvc/collection/list-collection-creator.js new file mode 100644 index 00000000000..9d40e93ec20 --- /dev/null +++ b/static/scripts/mvc/collection/list-collection-creator.js @@ -0,0 +1,2 @@ +define(["mvc/collection/collection-model","utils/localization"],function(){function a(a){var b="New Dataset List",c=a.toJSON().map(function(a){return{id:a.id,name:a.name,src:"dataset"===a.history_content_type?"hda":"hdca"}});return a.createHDCA(c,"list",b)}return{createListCollection:a}}); +//# sourceMappingURL=../../../maps/mvc/collection/list-collection-creator.js.map \ No newline at end of file diff --git a/static/scripts/mvc/collection/list-of-pairs-collection-creator.js b/static/scripts/mvc/collection/list-of-pairs-collection-creator.js new file mode 100644 index 00000000000..3e1587679ec --- /dev/null +++ b/static/scripts/mvc/collection/list-of-pairs-collection-creator.js @@ -0,0 +1,2 @@ +define(["utils/levenshtein","utils/natural-sort","mvc/base-mvc","utils/localization"],function(a,b,c,d){function e(a){function b(){return c.length||(c=[new RegExp(this.filters[0]),new RegExp(this.filters[1])]),c}a=a||{},a.createPair=a.createPair||function(a){return this.debug("creating pair:",a.listA[a.indexA].name,a.listB[a.indexB].name),a=a||{},this._pair(a.listA.splice(a.indexA,1)[0],a.listB.splice(a.indexB,1)[0],{silent:!0})};var c=[];return a.preprocessMatch=a.preprocessMatch||function(a){var c=b.call(this);return _.extend(a,{matchTo:a.matchTo.name.replace(c[0],""),possible:a.possible.name.replace(c[1],"")})},function(b){this.debug("autopair _strategy ---------------------------"),b=b||{};var c,d=b.listA,e=b.listB,f=0,g={score:0,index:null},h=[];for(this.debug("starting list lens:",d.length,e.length),this.debug("bestMatch (starting):",JSON.stringify(g,null," "));f=k?(this.debug("creating 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            "].join(""))},function(){jQuery.fn.extend({hoverhighlight:function(a,b){return a=a||"body",this.size()?($(this).each(function(){var c=$(this),d=c.data("target");d&&c.mouseover(function(){$(d,a).css({background:b})}).mouseout(function(){$(d).css({background:""})})}),this):this}})}();var h=function(a,b){if(b=_.defaults(b||{},{datasets:a,oncancel:function(){Galaxy.modal.hide()},oncreate:function(){Galaxy.modal.hide(),Galaxy.currHistoryPanel.refreshContents()}}),!window.Galaxy||!Galaxy.modal)throw new Error("Galaxy or Galaxy.modal not found");var c=new g(b);return Galaxy.modal.show({title:"Create a collection of paired datasets",body:c.$el,width:"80%",height:"800px",closing_events:!0}),c.render(),window.PCC=c,c};return{PairedCollectionCreator:g,pairedCollectionCreatorModal:h}}); +//# sourceMappingURL=../../../maps/mvc/collection/list-of-pairs-collection-creator.js.map \ No newline at end of file From 0c796800ea788152265e11f250a56f48330a6fa7 Mon Sep 17 00:00:00 2001 From: Carl Eberhard Date: Fri, 20 Mar 2015 14:25:57 -0400 Subject: [PATCH 3/5] UI, Collections: better validity checking of collection inputs (must be datasets in the ok state), refactoring --- .../mvc/collection/list-collection-creator.js | 41 +++++++++--- .../list-of-pairs-collection-creator.js | 52 +++++++++++---- .../mvc/collection/pair-collection-creator.js | 33 ++++++++++ .../scripts/mvc/history/history-panel-edit.js | 63 +++++-------------- client/galaxy/scripts/mvc/ui/error-modal.js | 29 +++++++++ .../collection/list-collection-creator.js.map | 2 +- .../list-of-pairs-collection-creator.js.map | 2 +- .../collection/pair-collection-creator.js.map | 1 + .../mvc/history/history-panel-edit.js.map | 2 +- static/maps/mvc/ui/error-modal.js.map | 1 + .../mvc/collection/list-collection-creator.js | 2 +- .../list-of-pairs-collection-creator.js | 2 +- .../mvc/collection/pair-collection-creator.js | 2 + .../scripts/mvc/history/history-panel-edit.js | 2 +- static/scripts/mvc/ui/error-modal.js | 2 + 15 files changed, 165 insertions(+), 71 deletions(-) create mode 100644 client/galaxy/scripts/mvc/collection/pair-collection-creator.js create mode 100644 client/galaxy/scripts/mvc/ui/error-modal.js create mode 100644 static/maps/mvc/collection/pair-collection-creator.js.map create mode 100644 static/maps/mvc/ui/error-modal.js.map create mode 100644 static/scripts/mvc/collection/pair-collection-creator.js create mode 100644 static/scripts/mvc/ui/error-modal.js diff --git a/client/galaxy/scripts/mvc/collection/list-collection-creator.js b/client/galaxy/scripts/mvc/collection/list-collection-creator.js index af376947c77..af2b795223c 100644 --- a/client/galaxy/scripts/mvc/collection/list-collection-creator.js +++ b/client/galaxy/scripts/mvc/collection/list-collection-creator.js @@ -1,27 +1,52 @@ define([ - "mvc/collection/collection-model", + "mvc/dataset/states", + "mvc/ui/error-modal", "utils/localization" -], function( DC_MODEL, _l ){ +], function( STATES, errorModal, _l ){ /*============================================================================== + ==============================================================================*/ -function createListCollection( collection ){ - //TODO: filter out non-datasets, non-ready - //TODO: fail if no valid elements remain - //return jQuery.Deferred().reject( _l( 'No valid datasets to add' ) ); +function validElements( collection ){ + var elements = collection.toJSON().filter( function( content ){ + return content.history_content_type === 'dataset' + && content.state === STATES.OK; + }); + return elements; +} + +var noValidElementsMessage = 'No valid datasets were selected'; + +function noValidElementsErrorModal(){ + errorModal( + 'Use the checkboxes at the left of the dataset names to select them. ' + + 'Selected datasets should be error-free and should have completed running.', + noValidElementsMessage + ); +} + +function createListHDCA( collection ){ var name = 'New Dataset List', - elementIdentifiers = collection.toJSON().map( function( element ){ + elementIdentifiers = validElements( collection ).map( function( element ){ // TODO: Handle duplicate names. return { id : element.id, name : element.name, + //TODO: this allows for list:list even if the filter above does not - reconcile src : ( element.history_content_type === 'dataset'? 'hda' : 'hdca' ) } }); + if( !elementIdentifiers.length ){ + noValidElementsErrorModal(); + return jQuery.Deferred().reject( noValidElementsMessage ); + } return collection.createHDCA( elementIdentifiers, 'list', name ); } //============================================================================== return { - createListCollection : createListCollection + validElements : validElements, + noValidElementsMessage : noValidElementsMessage, + noValidElementsErrorModal : noValidElementsErrorModal, + createListHDCA : createListHDCA }; }); diff --git a/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js b/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js index f956c1f43a4..b5ac964eb02 100644 --- a/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js +++ b/client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js @@ -1,9 +1,10 @@ define([ "utils/levenshtein", "utils/natural-sort", + "mvc/collection/list-collection-creator", "mvc/base-mvc", "utils/localization" -], function( levenshteinDistance, naturalSort, baseMVC, _l ){ +], function( levenshteinDistance, naturalSort, LIST_COLLECTION_CREATOR, baseMVC, _l ){ /* ============================================================================ TODO: @@ -247,6 +248,9 @@ var PairedCollectionCreator = Backbone.View.extend( baseMVC.LoggableMixin ).exte /** DOM elements currently being dragged */ this.$dragging = null; + /** Used for blocking UI events during ajax/operations (don't post twice) */ + this.blocking = false; + this._setUpBehaviors(); this._dataSetUp(); }, @@ -576,12 +580,16 @@ var PairedCollectionCreator = Backbone.View.extend( baseMVC.LoggableMixin ).exte }; //this.debug( JSON.stringify( ajaxData ) ); + creator.blocking = true; return jQuery.ajax( url, { type : 'POST', contentType : 'application/json', dataType : 'json', data : JSON.stringify( ajaxData ) }) + .always( function(){ + creator.blocking = false; + }) .fail( function( xhr, status, message ){ creator._ajaxErrHandler( xhr, status, message ); }) @@ -855,7 +863,7 @@ var PairedCollectionCreator = Backbone.View.extend( baseMVC.LoggableMixin ).exte what.addClass( VALIDATION_CLASS ); } }, - + // ------------------------------------------------------------------------ events /** set up event handlers on self */ _setUpBehaviors : function(){ @@ -1406,7 +1414,7 @@ var PairedCollectionCreator = Backbone.View.extend( baseMVC.LoggableMixin ).exte /** check for enter key press when in the collection name and submit */ _nameCheckForEnter : function( ev ){ - if( ev.keyCode === 13 ){ + if( ev.keyCode === 13 && !this.blocking ){ this._clickCreate(); } }, @@ -1421,7 +1429,7 @@ var PairedCollectionCreator = Backbone.View.extend( baseMVC.LoggableMixin ).exte var name = this._getName(); if( !name ){ this._validationWarning( 'name' ); - } else { + } else if( !this.blocking ){ this.createList(); } }, @@ -1683,12 +1691,18 @@ PairedCollectionCreator.templates = PairedCollectionCreator.templates || { /** a modal version of the paired collection creator */ var pairedCollectionCreatorModal = function _pairedCollectionCreatorModal( datasets, options ){ + var deferred = jQuery.Deferred(), + creator; + options = _.defaults( options || {}, { datasets : datasets, - oncancel : function(){ Galaxy.modal.hide(); }, - oncreate : function(){ + oncancel : function(){ Galaxy.modal.hide(); - Galaxy.currHistoryPanel.refreshContents(); + deferred.reject( 'cancelled' ); + }, + oncreate : function( creator, response ){ + Galaxy.modal.hide(); + deferred.resolve( response ); } }); @@ -1696,7 +1710,7 @@ var pairedCollectionCreatorModal = function _pairedCollectionCreatorModal( datas throw new Error( 'Galaxy or Galaxy.modal not found' ); } - var creator = new PairedCollectionCreator( options ); + creator = new PairedCollectionCreator( options ); Galaxy.modal.show({ title : 'Create a collection of paired datasets', body : creator.$el, @@ -1705,15 +1719,31 @@ var pairedCollectionCreatorModal = function _pairedCollectionCreatorModal( datas closing_events: true }); creator.render(); + window.creator = creator; + //TODO: remove modal header - window.PCC = creator; - return creator; + return deferred; }; +//============================================================================= +function createListOfPairsCollection( collection ){ + var elements = LIST_COLLECTION_CREATOR.validElements( collection ); + if( !elements.length ){ + LIST_COLLECTION_CREATOR.noValidElementsErrorModal(); + return jQuery.Deferred().reject( LIST_COLLECTION_CREATOR.noValidElementsMessage ); + } + + return pairedCollectionCreatorModal( elements, { + historyId : collection.historyId + }); +} + + //============================================================================= return { PairedCollectionCreator : PairedCollectionCreator, - pairedCollectionCreatorModal : pairedCollectionCreatorModal + pairedCollectionCreatorModal : pairedCollectionCreatorModal, + createListOfPairsCollection : createListOfPairsCollection }; }); diff --git a/client/galaxy/scripts/mvc/collection/pair-collection-creator.js b/client/galaxy/scripts/mvc/collection/pair-collection-creator.js new file mode 100644 index 00000000000..99185221382 --- /dev/null +++ b/client/galaxy/scripts/mvc/collection/pair-collection-creator.js @@ -0,0 +1,33 @@ +define([ + "mvc/collection/list-collection-creator", + "mvc/ui/error-modal", + "utils/localization" +], function( LIST_COLLECTION_CREATOR, errorModal, _l ){ + + function createPairHDCA( collection ){ + // currently: datasets in the ok state + var elementsJSON = LIST_COLLECTION_CREATOR.validElements( collection ); + if( !elementsJSON.length ){ + LIST_COLLECTION_CREATOR.noValidElementsErrorModal(); + return jQuery.Deferred().reject( LIST_COLLECTION_CREATOR.noValidElementsMessage ); + } + if( elementsJSON.length !== 2 ){ + errorModal( + 'When pairing datasets, select only two datasets: one forward and one reverse.', + 'Not a valid pair' + ); + return jQuery.Deferred().reject( LIST_COLLECTION_CREATOR.noValidElementsMessage ); + } + + var name = 'New Dataset Pair', + elementIdentifiers = [ + { name: "forward", src: "hda", id: elementsJSON[0].id }, + { name: "reverse", src: "hda", id: elementsJSON[1].id } + ]; + return collection.createHDCA( elementIdentifiers, 'paired', name ); + } + + return { + createPairHDCA : createPairHDCA + }; +}); diff --git a/client/galaxy/scripts/mvc/history/history-panel-edit.js b/client/galaxy/scripts/mvc/history/history-panel-edit.js index 35e15068c61..ae1de05ef56 100644 --- a/client/galaxy/scripts/mvc/history/history-panel-edit.js +++ b/client/galaxy/scripts/mvc/history/history-panel-edit.js @@ -8,6 +8,8 @@ define([ "mvc/tags", "mvc/annotations", "mvc/collection/list-collection-creator", + "mvc/collection/pair-collection-creator", + "mvc/collection/list-of-pairs-collection-creator", "ui/fa-icon-button", "mvc/ui/popup-menu", "utils/localization" @@ -21,6 +23,8 @@ define([ TAGS, ANNOTATIONS, LIST_COLLECTION_CREATOR, + PAIR_COLLECTION_CREATOR, + LIST_OF_PAIRS_COLLECTION_CREATOR, faIconButton, PopupMenu, _l @@ -29,47 +33,6 @@ define([ TODO: ============================================================================= */ -function createPairCollection( history, collection ){ - //TODO: filter out non-datasets, non-ready - //TODO: fail if no valid elements remain - //return jQuery.Deferred().reject( _l( 'No valid datasets to add' ) ); - var elementsJSON = collection.toJSON(), - name = 'New Dataset Pair', - elementIdentifiers = [ - { name: "forward", src: "hda", id: elementsJSON[0].id }, - { name: "reverse", src: "hda", id: elementsJSON[1].id } - ]; - return collection.createHDCA( elementIdentifiers, 'paired', name ); -} - -function createListOfPairsCollection( history, collection ){ - var datasets = collection.toJSON().filter( function( content ){ - return content.history_content_type === 'dataset' - && content.state === STATES.OK; - }); - - if( datasets.length ){ - require([ 'mvc/collection/paired-collection-creator' ], function( creator ){ - window.creator = creator.pairedCollectionCreatorModal( datasets, { - historyId : history.id - }); - }); - - } else { - Galaxy.modal.show({ - title : _l( 'No valid datasets were selected' ), - body : _l([ - 'Use the checkboxes at the left of the dataset names to select them.', - 'Selected datasets should be error-free and should have completed running.' - ].join(' ')), - buttons : { 'Ok': function(){ Galaxy.modal.hide(); } }, - closing_events: true - }); - } -} - - -// ============================================================================= var _super = HPANEL.HistoryPanel; // base class for current-history-panel and used as-is in history/view.mako /** @class Editable View/Controller for the history model. @@ -315,23 +278,31 @@ var HistoryPanelEdit = _super.extend( } }); } - return actions.concat([ + actions = actions.concat( panel._collectionActions() ); + return actions; + }, + + /** */ + _collectionActions : function(){ + var panel = this; + return [ { html: _l( 'Build Dataset List' ), func: function() { - LIST_COLLECTION_CREATOR.createListCollection( panel.getSelectedModels() ) + LIST_COLLECTION_CREATOR.createListHDCA( panel.getSelectedModels() ) .done( function(){ panel.model.refresh() }); } }, // TODO: Only show quick pair if two things selected. { html: _l( 'Build Dataset Pair' ), func: function() { - createPairCollection( panel.model, panel.getSelectedModels() ) + PAIR_COLLECTION_CREATOR.createPairHDCA( panel.getSelectedModels() ) .done( function(){ panel.model.refresh() }); } }, { html: _l( 'Build List of Dataset Pairs' ), func: function() { - createListOfPairsCollection( panel.model, panel.getSelectedModels() ); + LIST_OF_PAIRS_COLLECTION_CREATOR.createListOfPairsCollection( panel.getSelectedModels() ) + .done( function(){ panel.model.refresh() }); } }, - ]); + ]; }, // ------------------------------------------------------------------------ sub-views diff --git a/client/galaxy/scripts/mvc/ui/error-modal.js b/client/galaxy/scripts/mvc/ui/error-modal.js new file mode 100644 index 00000000000..379b62af9e4 --- /dev/null +++ b/client/galaxy/scripts/mvc/ui/error-modal.js @@ -0,0 +1,29 @@ +define([ + "utils/localization" +], function( _l ){ + + function _errorModal( message, title ){ + Galaxy.modal.show({ + title : _l( title ), + body : _l( message ), + buttons : { 'Ok': function(){ Galaxy.modal.hide(); } }, + closing_events: true + }); + } + + function _errorAlert( message, title ){ + alert( title + '\n\n' + message ); + } + + function errorModal( message, title ){ + if( !message ){ return; } + title = title || 'Error'; + if( window.Galaxy && Galaxy.modal ){ + return _errorModal( message, title ); + } + return _errorAlert( message, title ); + } + + +return errorModal; +}); diff --git a/static/maps/mvc/collection/list-collection-creator.js.map b/static/maps/mvc/collection/list-collection-creator.js.map index 09b984abf97..f4ca81f06d8 100644 --- 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\ No newline at end of file diff --git a/static/maps/mvc/ui/error-modal.js.map b/static/maps/mvc/ui/error-modal.js.map new file mode 100644 index 00000000000..819075abed9 --- /dev/null +++ b/static/maps/mvc/ui/error-modal.js.map @@ -0,0 +1 @@ +{"version":3,"file":"error-modal.js","sources":["../../../src/mvc/ui/error-modal.js"],"names":["define","_l","_errorModal","message","title","Galaxy","modal","show","body","buttons","Ok","hide","closing_events","_errorAlert","alert","errorModal","window"],"mappings":"AAAAA,QACI,sBACD,SAAUC,GAET,QAASC,GAAaC,EAASC,GAC3BC,OAAOC,MAAMC,MACTH,MAAUH,EAAIG,GACdI,KAAUP,EAAIE,GACdM,SAAYC,GAAM,WAAYL,OAAOC,MAAMK,SAC3CC,gBAAgB,IAIxB,QAASC,GAAaV,EAASC,GAC3BU,MAAOV,EAAQ,OAASD,GAG5B,QAASY,GAAYZ,EAASC,GAC1B,MAAKD,IACLC,EAAQA,GAAS,QACbY,OAAOX,QAAUA,OAAOC,MACjBJ,EAAaC,EAASC,GAE1BS,EAAaV,EAASC,IAL7B,OASR,MAAOW"} \ No newline at end of file diff --git a/static/scripts/mvc/collection/list-collection-creator.js b/static/scripts/mvc/collection/list-collection-creator.js index 9d40e93ec20..db14a262eee 100644 --- a/static/scripts/mvc/collection/list-collection-creator.js +++ b/static/scripts/mvc/collection/list-collection-creator.js @@ -1,2 +1,2 @@ -define(["mvc/collection/collection-model","utils/localization"],function(){function a(a){var b="New Dataset List",c=a.toJSON().map(function(a){return{id:a.id,name:a.name,src:"dataset"===a.history_content_type?"hda":"hdca"}});return a.createHDCA(c,"list",b)}return{createListCollection:a}}); +define(["mvc/dataset/states","mvc/ui/error-modal","utils/localization"],function(a,b){function c(b){var c=b.toJSON().filter(function(b){return"dataset"===b.history_content_type&&b.state===a.OK});return c}function d(){b("Use the checkboxes at the left of the dataset names to select them. Selected datasets should be error-free and should have completed running.",f)}function e(a){var b="New Dataset List",e=c(a).map(function(a){return{id:a.id,name:a.name,src:"dataset"===a.history_content_type?"hda":"hdca"}});return e.length?a.createHDCA(e,"list",b):(d(),jQuery.Deferred().reject(f))}var f="No valid datasets were selected";return{validElements:c,noValidElementsMessage:f,noValidElementsErrorModal:d,createListHDCA:e}}); //# sourceMappingURL=../../../maps/mvc/collection/list-collection-creator.js.map \ No newline at end of file diff --git a/static/scripts/mvc/collection/list-of-pairs-collection-creator.js b/static/scripts/mvc/collection/list-of-pairs-collection-creator.js index 3e1587679ec..33f1c0d2907 100644 --- a/static/scripts/mvc/collection/list-of-pairs-collection-creator.js +++ b/static/scripts/mvc/collection/list-of-pairs-collection-creator.js @@ -1,2 +1,2 @@ -define(["utils/levenshtein","utils/natural-sort","mvc/base-mvc","utils/localization"],function(a,b,c,d){function e(a){function b(){return c.length||(c=[new RegExp(this.filters[0]),new RegExp(this.filters[1])]),c}a=a||{},a.createPair=a.createPair||function(a){return this.debug("creating pair:",a.listA[a.indexA].name,a.listB[a.indexB].name),a=a||{},this._pair(a.listA.splice(a.indexA,1)[0],a.listB.splice(a.indexB,1)[0],{silent:!0})};var c=[];return a.preprocessMatch=a.preprocessMatch||function(a){var c=b.call(this);return _.extend(a,{matchTo:a.matchTo.name.replace(c[0],""),possible:a.possible.name.replace(c[1],"")})},function(b){this.debug("autopair _strategy ---------------------------"),b=b||{};var c,d=b.listA,e=b.listB,f=0,g={score:0,index:null},h=[];for(this.debug("starting list lens:",d.length,e.length),this.debug("bestMatch (starting):",JSON.stringify(g,null," "));f=k?(this.debug("creating 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                    "].join(""))},function(){jQuery.fn.extend({hoverhighlight:function(a,b){return a=a||"body",this.size()?($(this).each(function(){var c=$(this),d=c.data("target");d&&c.mouseover(function(){$(d,a).css({background:b})}).mouseout(function(){$(d).css({background:""})})}),this):this}})}();var h=function(a,b){if(b=_.defaults(b||{},{datasets:a,oncancel:function(){Galaxy.modal.hide()},oncreate:function(){Galaxy.modal.hide(),Galaxy.currHistoryPanel.refreshContents()}}),!window.Galaxy||!Galaxy.modal)throw new Error("Galaxy or Galaxy.modal not found");var c=new g(b);return Galaxy.modal.show({title:"Create a collection of paired datasets",body:c.$el,width:"80%",height:"800px",closing_events:!0}),c.render(),window.PCC=c,c};return{PairedCollectionCreator:g,pairedCollectionCreatorModal:h}}); +define(["utils/levenshtein","utils/natural-sort","mvc/collection/list-collection-creator","mvc/base-mvc","utils/localization"],function(a,b,c,d,e){function f(a){function b(){return c.length||(c=[new RegExp(this.filters[0]),new RegExp(this.filters[1])]),c}a=a||{},a.createPair=a.createPair||function(a){return this.debug("creating pair:",a.listA[a.indexA].name,a.listB[a.indexB].name),a=a||{},this._pair(a.listA.splice(a.indexA,1)[0],a.listB.splice(a.indexB,1)[0],{silent:!0})};var c=[];return a.preprocessMatch=a.preprocessMatch||function(a){var c=b.call(this);return _.extend(a,{matchTo:a.matchTo.name.replace(c[0],""),possible:a.possible.name.replace(c[1],"")})},function(b){this.debug("autopair _strategy ---------------------------"),b=b||{};var c,d=b.listA,e=b.listB,f=0,g={score:0,index:null},h=[];for(this.debug("starting list lens:",d.length,e.length),this.debug("bestMatch (starting):",JSON.stringify(g,null," "));f=k?(this.debug("creating pair"),h.push(a.createPair.call(this,{listA:d,indexA:f,listB:e,indexB:g.index})),this.debug("list lens now:",d.length,e.length)):f+=1,!d.length||!e.length)return h}return this.debug("paired:",JSON.stringify(h,null," ")),this.debug("autopair _strategy ---------------------------"),h}}function g(a){var b=c.validElements(a);return b.length?j(b,{historyId:a.historyId}):(c.noValidElementsErrorModal(),jQuery.Deferred().reject(c.noValidElementsMessage))}var h=Backbone.View.extend(d.LoggableMixin).extend({tagName:"li",className:"dataset paired",initialize:function(a){this.pair=a.pair||{}},template:_.template(['<%= pair.forward.name %>','','<%= pair.name %>',"",'<%= pair.reverse.name %>'].join("")),render:function(){return this.$el.attr("draggable",!0).data("pair",this.pair).html(this.template({pair:this.pair})).addClass("flex-column-container"),this},events:{dragstart:"_dragstart",dragend:"_dragend",dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(a){a.currentTarget.style.opacity="0.4",a.originalEvent&&(a=a.originalEvent),a.dataTransfer.effectAllowed="move",a.dataTransfer.setData("text/plain",JSON.stringify(this.pair)),this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(a){a.currentTarget.style.opacity="1.0",this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(a){this.$el.parent().trigger(a)},toString:function(){return"PairView("+this.pair.name+")"}}),i=Backbone.View.extend(d.LoggableMixin).extend({className:"collection-creator flex-row-container",initialize:function(a){this.metric("PairedCollectionCreator.initialize",a),a=_.defaults(a,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:!0,strategy:"lcs",matchPercentage:.9,twoPassAutopairing:!0}),this.initialList=a.datasets,this.historyId=a.historyId,this.filters=this.commonFilters[a.filters]||this.commonFilters[this.DEFAULT_FILTERS],_.isArray(a.filters)&&(this.filters=a.filters),this.automaticallyPair=a.automaticallyPair,this.strategy=this.strategies[a.strategy]||this.strategies[this.DEFAULT_STRATEGY],_.isFunction(a.strategy)&&(this.strategy=a.strategy),this.matchPercentage=a.matchPercentage,this.twoPassAutopairing=a.twoPassAutopairing,this.removeExtensions=!0,this.oncancel=a.oncancel,this.oncreate=a.oncreate,this.autoscrollDist=a.autoscrollDist||24,this.unpairedPanelHidden=!1,this.pairedPanelHidden=!1,this.$dragging=null,this.blocking=!1,this._setUpBehaviors(),this._dataSetUp()},commonFilters:{illumina:["_1","_2"],Rs:["_R1","_R2"]},DEFAULT_FILTERS:"illumina",strategies:{simple:"autopairSimple",lcs:"autopairLCS",levenshtein:"autopairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[],this.unpaired=[],this.selectedIds=[],this._sortInitialList(),this._ensureIds(),this.unpaired=this.initialList.slice(0),this.automaticallyPair&&(this.autoPair(),this.once("rendered:initial",function(){this.trigger("autopair")}))},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(a){return a.sort(function(a,c){return b(a.name,c.name)}),a},_ensureIds:function(){return this.initialList.forEach(function(a){a.hasOwnProperty("id")||(a.id=_.uniqueId())}),this.initialList},_splitByFilters:function(){function a(a,b){return b.test(a.name)}var b=this.filters.map(function(a){return new RegExp(a)}),c=[[],[]];return this.unpaired.forEach(function(d){b.forEach(function(b,e){a(d,b)&&c[e].push(d)})}),c},_addToUnpaired:function(a){var c=function(d,e){if(d===e)return d;var f=Math.floor((e-d)/2)+d,g=b(a.name,this.unpaired[f].name);if(0>g)return c(d,f);if(g>0)return c(f+1,e);for(;this.unpaired[f]&&this.unpaired[f].name===a.name;)f++;return f}.bind(this);this.unpaired.splice(c(0,this.unpaired.length),0,a)},autoPair:function(a){var b=this._splitByFilters(),c=[];return this.twoPassAutopairing&&(c=this.autopairSimple({listA:b[0],listB:b[1]}),b=this._splitByFilters()),a=a||this.strategy,b=this._splitByFilters(),c=c.concat(this[a].call(this,{listA:b[0],listB:b[1]}))},autopairSimple:f({scoreThreshold:function(){return 1},match:function(a){return a=a||{},a.matchTo===a.possible?{index:a.index,score:1}:a.bestMatch}}),autopairLevenshtein:f({scoreThreshold:function(){return this.matchPercentage},match:function(b){b=b||{};var c=a(b.matchTo,b.possible),d=1-c/Math.max(b.matchTo.length,b.possible.length);return d>b.bestMatch.score?{index:b.index,score:d}:b.bestMatch}}),autopairLCS:f({scoreThreshold:function(){return this.matchPercentage},match:function(a){a=a||{};var b=this._naiveStartingAndEndingLCS(a.matchTo,a.possible).length,c=b/Math.max(a.matchTo.length,a.possible.length);return c>a.bestMatch.score?{index:a.index,score:c}:a.bestMatch}}),_naiveStartingAndEndingLCS:function(a,b){for(var c="",d="",e=0,f=0;e=0&&f>=0&&a[e]===b[f];)d=[a[e],d].join(""),e-=1,f-=1;return c+d},_pair:function(a,b,c){c=c||{};var d=this._createPair(a,b,c.name);return this.paired.push(d),this.unpaired=_.without(this.unpaired,a,b),c.silent||this.trigger("pair:new",d),d},_createPair:function(a,b,c){if(!a||!b||a===b)throw new Error("Bad pairing: "+[JSON.stringify(a),JSON.stringify(b)]);return c=c||this._guessNameForPair(a,b),{forward:a,name:c,reverse:b}},_guessNameForPair:function(a,b,c){c=void 0!==c?c:this.removeExtensions;var d=a.name,e=b.name,f=this._naiveStartingAndEndingLCS(d.replace(this.filters[0],""),e.replace(this.filters[1],""));if(c){var g=f.lastIndexOf(".");if(g>0){var h=f.slice(g,f.length);f=f.replace(h,""),d=d.replace(h,""),e=e.replace(h,"")}}return f||d+" & "+e},_unpair:function(a,b){if(b=b||{},!a)throw new Error("Bad pair: "+JSON.stringify(a));return this.paired=_.without(this.paired,a),this._addToUnpaired(a.forward),this._addToUnpaired(a.reverse),b.silent||this.trigger("pair:unpair",[a]),a},unpairAll:function(){for(var a=[];this.paired.length;)a.push(this._unpair(this.paired[0],{silent:!0}));this.trigger("pair:unpair",a)},_pairToJSON:function(a,b){return b=b||"hda",{collection_type:"paired",src:"new_collection",name:a.name,element_identifiers:[{name:"forward",id:a.forward.id,src:b},{name:"reverse",id:a.reverse.id,src:b}]}},createList:function(a){var b=this,c="/api/histories/"+this.historyId+"/contents/dataset_collections",d={type:"dataset_collection",collection_type:"list:paired",name:_.escape(a||b.$(".collection-name").val()),element_identifiers:b.paired.map(function(a){return b._pairToJSON(a)})};return b.blocking=!0,jQuery.ajax(c,{type:"POST",contentType:"application/json",dataType:"json",data:JSON.stringify(d)}).always(function(){b.blocking=!1}).fail(function(a,c,d){b._ajaxErrHandler(a,c,d)}).done(function(a,c,d){b.trigger("collection:created",a,c,d),b.metric("collection:created",a),"function"==typeof b.oncreate&&b.oncreate.call(this,a,c,d)})},_ajaxErrHandler:function(a,b,c){this.error(a,b,c);var d=e("An error occurred while creating this collection");a&&(d+=0===a.readyState&&0===a.status?": "+e("Galaxy could not be reached and may be updating.")+e(" Try again in a few minutes."):a.responseJSON?"
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                    ","
                    "].join("")),middle:_.template(['
                    ','
                    ','
                      ',"
                      ",'
                      ','
                        ',"
                        ",'
                        ','
                          ',"
                          ","
                          ",'
                          ','
                          ','
                          ','
                          ','',"
                          ",'',e("Unpair all"),"","
                          ","
                          ",'
                          ','
                            ',"
                            "].join("")),footer:_.template(['
                            ','
                            ','","
                            ",'
                            ','','
                            ',e("Name"),":
                            ","
                            ","
                            ",'
                            ','
                            ','",'
                            ','",'","
                            ","
                            ",'
                            ','","
                            ","
                            "].join("")),helpContent:_.template(["

                            ",e(["Collections of paired datasets are ordered lists of dataset pairs (often forward and reverse reads). ","These collections can be passed to tools and workflows in order to have analyses done on each member of ","the entire group. This interface allows you to create a collection, choose which datasets are paired, ","and re-order the final collection."].join("")),"

                            ","

                            ",e(['Unpaired datasets are shown in the unpaired section ',"(hover over the underlined words to highlight below). ",'Paired datasets are shown in the paired section.',"

                              To pair datasets, you can:","
                            • Click a dataset in the ",'forward column ',"to select it then click a dataset in the ",'reverse column.',"
                              • ",'
                            • Click one of the "Pair these datasets" buttons in the ','middle column ',"to pair the datasets in a particular row.","
                              • ",'
                            • Click "Auto-pair" ',"to have your datasets automatically paired based on name.","
                              • ","
                            "].join("")),"

                            ","

                            ",e(["

                              You can filter what is shown in the unpaired sections by:","
                            • Entering partial dataset names in either the ",'forward filter or ','reverse filter.',"
                              • ","
                            • Choosing from a list of preset filters by clicking the ",'"Choose filters" link.',"
                              • ","
                            • Entering regular expressions to match dataset names. See: ",'MDN\'s JavaScript Regular Expression Tutorial. ',"Note: forward slashes (\\) are not needed.","
                              • ","
                            • Clearing the filters by clicking the ",'"Clear filters" link.',"
                              • ","
                            "].join("")),"

                            ","

                            ",e(["To unpair individual dataset pairs, click the ",'unpair buttons ( ). ','Click the "Unpair all" link to unpair all pairs.'].join("")),"

                            ","

                            ",e(['You can include or remove the file extensions (e.g. ".fastq") from your pair names by toggling the ','"Remove file extensions from pair names?" control.'].join("")),"

                            ","

                            ",e(['Once your collection is complete, enter a name and ','click "Create list". ',"(Note: you do not have to pair all unpaired datasets to finish.)"].join("")),"

                            "].join(""))},function(){jQuery.fn.extend({hoverhighlight:function(a,b){return a=a||"body",this.size()?($(this).each(function(){var c=$(this),d=c.data("target");d&&c.mouseover(function(){$(d,a).css({background:b})}).mouseout(function(){$(d).css({background:""})})}),this):this}})}();var j=function(a,b){var c,d=jQuery.Deferred();if(b=_.defaults(b||{},{datasets:a,oncancel:function(){Galaxy.modal.hide(),d.reject("cancelled")},oncreate:function(a,b){Galaxy.modal.hide(),d.resolve(b)}}),!window.Galaxy||!Galaxy.modal)throw new Error("Galaxy or Galaxy.modal not found");return c=new i(b),Galaxy.modal.show({title:"Create a collection of paired datasets",body:c.$el,width:"80%",height:"800px",closing_events:!0}),c.render(),window.creator=c,d};return{PairedCollectionCreator:i,pairedCollectionCreatorModal:j,createListOfPairsCollection:g}}); //# sourceMappingURL=../../../maps/mvc/collection/list-of-pairs-collection-creator.js.map \ No newline at end of file diff --git a/static/scripts/mvc/collection/pair-collection-creator.js b/static/scripts/mvc/collection/pair-collection-creator.js new file mode 100644 index 00000000000..92e1c8c8952 --- /dev/null +++ b/static/scripts/mvc/collection/pair-collection-creator.js @@ -0,0 +1,2 @@ +define(["mvc/collection/list-collection-creator","mvc/ui/error-modal","utils/localization"],function(a,b){function c(c){var d=a.validElements(c);if(!d.length)return a.noValidElementsErrorModal(),jQuery.Deferred().reject(a.noValidElementsMessage);if(2!==d.length)return b("When pairing datasets, select only two datasets: one forward and one reverse.","Not a valid pair"),jQuery.Deferred().reject(a.noValidElementsMessage);var e="New Dataset Pair",f=[{name:"forward",src:"hda",id:d[0].id},{name:"reverse",src:"hda",id:d[1].id}];return c.createHDCA(f,"paired",e)}return{createPairHDCA:c}}); +//# sourceMappingURL=../../../maps/mvc/collection/pair-collection-creator.js.map \ No newline at end of file diff --git a/static/scripts/mvc/history/history-panel-edit.js b/static/scripts/mvc/history/history-panel-edit.js index af11f7fb2b6..c7149d46e26 100644 --- a/static/scripts/mvc/history/history-panel-edit.js +++ b/static/scripts/mvc/history/history-panel-edit.js @@ -1,2 +1,2 @@ -define(["mvc/history/history-panel","mvc/history/history-contents","mvc/dataset/states","mvc/history/hda-model","mvc/history/hda-li-edit","mvc/history/hdca-li-edit","mvc/tags","mvc/annotations","mvc/collection/list-collection-creator","ui/fa-icon-button","mvc/ui/popup-menu","utils/localization"],function(a,b,c,d,e,f,g,h,i,j,k,l){function m(a,b){var c=b.toJSON(),d="New Dataset Pair",e=[{name:"forward",src:"hda",id:c[0].id},{name:"reverse",src:"hda",id:c[1].id}];return b.createHDCA(e,"paired",d)}function n(a,b){var d=b.toJSON().filter(function(a){return"dataset"===a.history_content_type&&a.state===c.OK});d.length?require(["mvc/collection/paired-collection-creator"],function(b){window.creator=b.pairedCollectionCreatorModal(d,{historyId:a.id})}):Galaxy.modal.show({title:l("No valid datasets were selected"),body:l(["Use the checkboxes at the left of the dataset names to select them.","Selected datasets should be error-free and should have completed running."].join(" ")),buttons:{Ok:function(){Galaxy.modal.hide()}},closing_events:!0})}var o=a.HistoryPanel,p=o.extend({HDAViewClass:e.HDAListItemEdit,HDCAViewClass:f.HDCAListItemEdit,initialize:function(a){a=a||{},o.prototype.initialize.call(this,a),this.tagsEditor=null,this.annotationEditor=null,this.purgeAllowed=a.purgeAllowed||!1,this.annotationEditorShown=a.annotationEditorShown||!1,this.tagsEditorShown=a.tagsEditorShown||!1},_setUpListeners:function(){var a=this;o.prototype._setUpListeners.call(a),a.on("drop",function(b,c){a.dataDropped(c),a.dropTargetOff()}),a.on("view:attached view:removed",function(){a._renderCounts()},a)},_setUpCollectionListeners:function(){return o.prototype._setUpCollectionListeners.call(this),this.collection.on("change:deleted",this._handleHdaDeletionChange,this),this.collection.on("change:visible",this._handleHdaVisibleChange,this),this.collection.on("change:purged",function(){this.model.fetch()},this),this},_setUpModelListeners:function(){return o.prototype._setUpModelListeners.call(this),this.model.on("change:nice_size",this.updateHistoryDiskSize,this),this},_buildNewRender:function(){var a=o.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")&&(this._renderTags(a),this._renderAnnotation(a)),a):a},renderItems:function(a){var b=o.prototype.renderItems.call(this,a);return this._renderCounts(a),b},_renderCounts:function(a){function b(a,b){return['',b,""].join("")}a=a||this.$el;var c=this.collection.where({deleted:!0}),d=this.collection.where({visible:!1}),e=[];return this.views.length&&e.push([this.views.length,l("shown")].join(" ")),c.length&&e.push(this.showDeleted?b("toggle-deleted-link",l("hide deleted")):[c.length,b("toggle-deleted-link",l("deleted"))].join(" ")),d.length&&e.push(this.showHidden?b("toggle-hidden-link",l("hide hidden")):[d.length,b("toggle-hidden-link",l("hidden"))].join(" ")),a.find("> .controls .subtitle").html(e.join(", "))},_renderTags:function(a){var b=this;this.tagsEditor=new g.TagsEditor({model:this.model,el:a.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDATagEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDATagEditors(!1,b.fxSpeed)},$activator:j({title:l("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(a.find(".controls .actions"))})},_renderAnnotation:function(a){var b=this;this.annotationEditor=new h.AnnotationEditor({model:this.model,el:a.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDAAnnotationEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDAAnnotationEditors(!1,b.fxSpeed)},$activator:j({title:l("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(a.find(".controls .actions"))})},_setUpBehaviors:function(a){if(a=a||this.$el,o.prototype._setUpBehaviors.call(this,a),this.model&&Galaxy.currUser&&!Galaxy.currUser.isAnonymous()&&Galaxy.currUser.id===this.model.get("user_id")){var b=this,c="> .controls .name";a.find(c).attr("title",l("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(a){var d=b.model.get("name");a&&a!==d?(b.$el.find(c).text(a),b.model.save({name:a}).fail(function(){b.$el.find(c).text(b.model.previous("name"))})):b.$el.find(c).text(d)}})}},multiselectActions:function(){var a=this,b=[{html:l("Hide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.hide;a.getSelectedModels().ajaxQueue(b)}},{html:l("Unhide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.unhide;a.getSelectedModels().ajaxQueue(b)}},{html:l("Delete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.delete;a.getSelectedModels().ajaxQueue(b)}},{html:l("Undelete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.undelete;a.getSelectedModels().ajaxQueue(b)}}];return a.purgeAllowed&&b.push({html:l("Permanently delete datasets"),func:function(){if(confirm(l("This will permanently remove the data in your datasets. Are you sure?"))){var b=d.HistoryDatasetAssociation.prototype.purge;a.getSelectedModels().ajaxQueue(b)}}}),b.concat([{html:l("Build Dataset List"),func:function(){i.createListCollection(a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:l("Build Dataset Pair"),func:function(){m(a.model,a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:l("Build List of Dataset Pairs"),func:function(){n(a.model,a.getSelectedModels())}}])},_attachItems:function(a){return this.$list(a).append(this.views.reverse().map(function(a){return a.$el})),this},_attachView:function(a){var b=this;b.views.unshift(a),b.$list().prepend(a.render(0).$el.hide()),b.trigger("view:attached",a),a.$el.slideDown(b.fxSpeed,function(){b.trigger("view:attached:rendered")})},_getItemViewOptions:function(a){var b=o.prototype._getItemViewOptions.call(this,a);return _.extend(b,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),b},_handleHdaDeletionChange:function(a){a.get("deleted")&&!this.showDeleted&&this.removeItemView(a),this._renderCounts()},_handleHdaVisibleChange:function(a){a.hidden()&&!this.storage.showHidden&&this.removeItemView(a),this._renderCounts()},toggleHDATagEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.tagsEditor&&b.tagsEditor.toggle.apply(b.tagsEditor,a)})},toggleHDAAnnotationEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.annotationEditor&&b.annotationEditor.toggle.apply(b.annotationEditor,a)})},events:_.extend(_.clone(o.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(){this.toggleShowDeleted()},"click .toggle-hidden-link":function(){this.toggleShowHidden()}}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var a={dragenter:_.bind(this.dragenter,this),dragover:_.bind(this.dragover,this),dragleave:_.bind(this.dragleave,this),drop:_.bind(this.drop,this)},b=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),b]);for(var c in a)a.hasOwnProperty(c)&&b.on(c,a[c]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),$("
                            ").addClass("history-drop-target").css({height:"64px",margin:"0px 10px 10px 10px",border:"1px dashed black","border-radius":"3px"})},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),$("
                            ").addClass("history-drop-target-help").css({margin:"10px 10px 4px 10px",color:"grey","font-size":"80%","font-style":"italic"}).text(l("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var a=this.$(".history-drop-target").get(0);for(var b in this._dropHandlers)this._dropHandlers.hasOwnProperty(b)&&(console.debug(b,this._dropHandlers[b]),a.off(b,this._dropHandlers[b]));return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(a){a.preventDefault(),a.stopPropagation()},dragleave:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(a){a.preventDefault(),a.dataTransfer.dropEffect="move";var b=this,c=a.dataTransfer.getData("text");try{c=JSON.parse(c)}catch(d){this.warn("error parsing JSON from drop:",c)}return this.trigger("droptarget:drop",a,c,b),!1},dataDropped:function(a){var b=this;return _.isObject(a)&&"HistoryDatasetAssociation"===a.model_class&&a.id?b.model.contents.copy(a.id):jQuery.when()},toString:function(){return"HistoryPanelEdit("+(this.model?this.model.get("name"):"")+")"}});return{HistoryPanelEdit:p}}); +define(["mvc/history/history-panel","mvc/history/history-contents","mvc/dataset/states","mvc/history/hda-model","mvc/history/hda-li-edit","mvc/history/hdca-li-edit","mvc/tags","mvc/annotations","mvc/collection/list-collection-creator","mvc/collection/pair-collection-creator","mvc/collection/list-of-pairs-collection-creator","ui/fa-icon-button","mvc/ui/popup-menu","utils/localization"],function(a,b,c,d,e,f,g,h,i,j,k,l,m,n){var o=a.HistoryPanel,p=o.extend({HDAViewClass:e.HDAListItemEdit,HDCAViewClass:f.HDCAListItemEdit,initialize:function(a){a=a||{},o.prototype.initialize.call(this,a),this.tagsEditor=null,this.annotationEditor=null,this.purgeAllowed=a.purgeAllowed||!1,this.annotationEditorShown=a.annotationEditorShown||!1,this.tagsEditorShown=a.tagsEditorShown||!1},_setUpListeners:function(){var a=this;o.prototype._setUpListeners.call(a),a.on("drop",function(b,c){a.dataDropped(c),a.dropTargetOff()}),a.on("view:attached view:removed",function(){a._renderCounts()},a)},_setUpCollectionListeners:function(){return o.prototype._setUpCollectionListeners.call(this),this.collection.on("change:deleted",this._handleHdaDeletionChange,this),this.collection.on("change:visible",this._handleHdaVisibleChange,this),this.collection.on("change:purged",function(){this.model.fetch()},this),this},_setUpModelListeners:function(){return o.prototype._setUpModelListeners.call(this),this.model.on("change:nice_size",this.updateHistoryDiskSize,this),this},_buildNewRender:function(){var a=o.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")&&(this._renderTags(a),this._renderAnnotation(a)),a):a},renderItems:function(a){var b=o.prototype.renderItems.call(this,a);return this._renderCounts(a),b},_renderCounts:function(a){function b(a,b){return['',b,""].join("")}a=a||this.$el;var c=this.collection.where({deleted:!0}),d=this.collection.where({visible:!1}),e=[];return this.views.length&&e.push([this.views.length,n("shown")].join(" ")),c.length&&e.push(this.showDeleted?b("toggle-deleted-link",n("hide deleted")):[c.length,b("toggle-deleted-link",n("deleted"))].join(" ")),d.length&&e.push(this.showHidden?b("toggle-hidden-link",n("hide hidden")):[d.length,b("toggle-hidden-link",n("hidden"))].join(" ")),a.find("> .controls .subtitle").html(e.join(", "))},_renderTags:function(a){var b=this;this.tagsEditor=new g.TagsEditor({model:this.model,el:a.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDATagEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDATagEditors(!1,b.fxSpeed)},$activator:l({title:n("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(a.find(".controls .actions"))})},_renderAnnotation:function(a){var b=this;this.annotationEditor=new h.AnnotationEditor({model:this.model,el:a.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.toggleHDAAnnotationEditors(!0,b.fxSpeed)},onhide:function(){b.toggleHDAAnnotationEditors(!1,b.fxSpeed)},$activator:l({title:n("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(a.find(".controls .actions"))})},_setUpBehaviors:function(a){if(a=a||this.$el,o.prototype._setUpBehaviors.call(this,a),this.model&&Galaxy.currUser&&!Galaxy.currUser.isAnonymous()&&Galaxy.currUser.id===this.model.get("user_id")){var b=this,c="> .controls .name";a.find(c).attr("title",n("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(a){var d=b.model.get("name");a&&a!==d?(b.$el.find(c).text(a),b.model.save({name:a}).fail(function(){b.$el.find(c).text(b.model.previous("name"))})):b.$el.find(c).text(d)}})}},multiselectActions:function(){var a=this,b=[{html:n("Hide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.hide;a.getSelectedModels().ajaxQueue(b)}},{html:n("Unhide datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.unhide;a.getSelectedModels().ajaxQueue(b)}},{html:n("Delete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.delete;a.getSelectedModels().ajaxQueue(b)}},{html:n("Undelete datasets"),func:function(){var b=d.HistoryDatasetAssociation.prototype.undelete;a.getSelectedModels().ajaxQueue(b)}}];return a.purgeAllowed&&b.push({html:n("Permanently delete datasets"),func:function(){if(confirm(n("This will permanently remove the data in your datasets. Are you sure?"))){var b=d.HistoryDatasetAssociation.prototype.purge;a.getSelectedModels().ajaxQueue(b)}}}),b=b.concat(a._collectionActions())},_collectionActions:function(){var a=this;return[{html:n("Build Dataset List"),func:function(){i.createListHDCA(a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:n("Build Dataset Pair"),func:function(){j.createPairHDCA(a.getSelectedModels()).done(function(){a.model.refresh()})}},{html:n("Build List of Dataset Pairs"),func:function(){k.createListOfPairsCollection(a.getSelectedModels()).done(function(){a.model.refresh()})}}]},_attachItems:function(a){return this.$list(a).append(this.views.reverse().map(function(a){return a.$el})),this},_attachView:function(a){var b=this;b.views.unshift(a),b.$list().prepend(a.render(0).$el.hide()),b.trigger("view:attached",a),a.$el.slideDown(b.fxSpeed,function(){b.trigger("view:attached:rendered")})},_getItemViewOptions:function(a){var b=o.prototype._getItemViewOptions.call(this,a);return _.extend(b,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),b},_handleHdaDeletionChange:function(a){a.get("deleted")&&!this.showDeleted&&this.removeItemView(a),this._renderCounts()},_handleHdaVisibleChange:function(a){a.hidden()&&!this.storage.showHidden&&this.removeItemView(a),this._renderCounts()},toggleHDATagEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.tagsEditor&&b.tagsEditor.toggle.apply(b.tagsEditor,a)})},toggleHDAAnnotationEditors:function(){var a=Array.prototype.slice.call(arguments,1);_.each(this.views,function(b){b.annotationEditor&&b.annotationEditor.toggle.apply(b.annotationEditor,a)})},events:_.extend(_.clone(o.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(){this.toggleShowDeleted()},"click .toggle-hidden-link":function(){this.toggleShowHidden()}}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var a={dragenter:_.bind(this.dragenter,this),dragover:_.bind(this.dragover,this),dragleave:_.bind(this.dragleave,this),drop:_.bind(this.drop,this)},b=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),b]);for(var c in a)a.hasOwnProperty(c)&&b.on(c,a[c]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),$("
                            ").addClass("history-drop-target").css({height:"64px",margin:"0px 10px 10px 10px",border:"1px dashed black","border-radius":"3px"})},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),$("
                            ").addClass("history-drop-target-help").css({margin:"10px 10px 4px 10px",color:"grey","font-size":"80%","font-style":"italic"}).text(n("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var a=this.$(".history-drop-target").get(0);for(var b in this._dropHandlers)this._dropHandlers.hasOwnProperty(b)&&(console.debug(b,this._dropHandlers[b]),a.off(b,this._dropHandlers[b]));return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(a){a.preventDefault(),a.stopPropagation()},dragleave:function(a){a.preventDefault(),a.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(a){a.preventDefault(),a.dataTransfer.dropEffect="move";var b=this,c=a.dataTransfer.getData("text");try{c=JSON.parse(c)}catch(d){this.warn("error parsing JSON from drop:",c)}return this.trigger("droptarget:drop",a,c,b),!1},dataDropped:function(a){var b=this;return _.isObject(a)&&"HistoryDatasetAssociation"===a.model_class&&a.id?b.model.contents.copy(a.id):jQuery.when()},toString:function(){return"HistoryPanelEdit("+(this.model?this.model.get("name"):"")+")"}});return{HistoryPanelEdit:p}}); //# sourceMappingURL=../../../maps/mvc/history/history-panel-edit.js.map \ No newline at end of file diff --git a/static/scripts/mvc/ui/error-modal.js b/static/scripts/mvc/ui/error-modal.js new file mode 100644 index 00000000000..359a5432cb6 --- /dev/null +++ b/static/scripts/mvc/ui/error-modal.js @@ -0,0 +1,2 @@ +define(["utils/localization"],function(a){function b(b,c){Galaxy.modal.show({title:a(c),body:a(b),buttons:{Ok:function(){Galaxy.modal.hide()}},closing_events:!0})}function c(a,b){alert(b+"\n\n"+a)}function d(a,d){return a?(d=d||"Error",window.Galaxy&&Galaxy.modal?b(a,d):c(a,d)):void 0}return d}); +//# sourceMappingURL=../../../maps/mvc/ui/error-modal.js.map \ No newline at end of file From 1e552066961ccef21d9ea30b1e6e85849b68934b Mon Sep 17 00:00:00 2001 From: Carl Eberhard Date: Fri, 20 Mar 2015 14:49:57 -0400 Subject: [PATCH 4/5] UI, Collections: show deleted and hidden warnings on collection list items --- .../scripts/mvc/collection/collection-li.js | 27 +++++++++++++++++++ client/galaxy/scripts/mvc/history/hdca-li.js | 12 +++++++++ .../maps/mvc/collection/collection-li.js.map | 2 +- static/maps/mvc/history/hdca-li.js.map | 2 +- .../scripts/mvc/collection/collection-li.js | 2 +- static/scripts/mvc/history/hdca-li.js | 2 +- 6 files changed, 43 insertions(+), 4 deletions(-) diff --git a/client/galaxy/scripts/mvc/collection/collection-li.js b/client/galaxy/scripts/mvc/collection/collection-li.js index ef236323b26..bd5c96075d1 100644 --- a/client/galaxy/scripts/mvc/collection/collection-li.js +++ b/client/galaxy/scripts/mvc/collection/collection-li.js @@ -74,6 +74,32 @@ var DCListItemView = FoldoutListItemView.extend( /** underscore templates */ DCListItemView.prototype.templates = (function(){ + var warnings = _.extend( {}, FoldoutListItemView.prototype.templates.warnings, { + error : BASE_MVC.wrapTemplate([ + // error during index fetch - show error on dataset + '<% if( model.error ){ %>', + '
                            ', + _l( 'There was an error getting the data for this collection' ), ': <%- model.error %>', + '
                            ', + '<% } %>' + ]), + purged : BASE_MVC.wrapTemplate([ + '<% if( model.purged ){ %>', + '
                            ', + _l( 'This collection has been deleted and removed from disk' ), + '
                            ', + '<% } %>' + ]), + deleted : BASE_MVC.wrapTemplate([ + // deleted not purged + '<% if( model.deleted && !model.purged ){ %>', + '
                            ', + _l( 'This collection has been deleted' ), + '
                            ', + '<% } %>' + ]) + }); + // use element identifier var titleBarTemplate = BASE_MVC.wrapTemplate([ '
                            ', @@ -85,6 +111,7 @@ DCListItemView.prototype.templates = (function(){ ], 'collection' ); return _.extend( {}, FoldoutListItemView.prototype.templates, { + warnings : warnings, titleBar : titleBarTemplate }); }()); diff --git a/client/galaxy/scripts/mvc/history/hdca-li.js b/client/galaxy/scripts/mvc/history/hdca-li.js index e8c744f359c..6c38e6922d2 100644 --- a/client/galaxy/scripts/mvc/history/hdca-li.js +++ b/client/galaxy/scripts/mvc/history/hdca-li.js @@ -53,6 +53,17 @@ var HDCAListItemView = _super.extend( /** underscore templates */ HDCAListItemView.prototype.templates = (function(){ + var warnings = _.extend( {}, _super.prototype.templates.warnings, { + hidden : BASE_MVC.wrapTemplate([ + // add a warning when hidden + '<% if( !collection.visible ){ %>', + '
                            ', + _l( 'This collection has been hidden' ), + '
                            ', + '<% } %>' + ], 'collection' ) + }); + // could steal this from hda-base (or use mixed content) var titleBarTemplate = BASE_MVC.wrapTemplate([ // adding the hid display to the title @@ -68,6 +79,7 @@ HDCAListItemView.prototype.templates = (function(){ ], 'collection' ); return _.extend( {}, _super.prototype.templates, { + warnings : warnings, titleBar : titleBarTemplate }); }()); diff --git a/static/maps/mvc/collection/collection-li.js.map b/static/maps/mvc/collection/collection-li.js.map index f3d1dac2123..4b1466a94bc 100644 --- a/static/maps/mvc/collection/collection-li.js.map +++ b/static/maps/mvc/collection/collection-li.js.map @@ -1 +1 @@ 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\ No newline at end of file diff --git a/static/scripts/mvc/collection/collection-li.js b/static/scripts/mvc/collection/collection-li.js index 9f43c44b307..0529ee2460c 100644 --- a/static/scripts/mvc/collection/collection-li.js +++ b/static/scripts/mvc/collection/collection-li.js @@ -1,2 +1,2 @@ -define(["mvc/list/list-item","mvc/dataset/dataset-li","mvc/base-mvc","utils/localization"],function(a,b,c,d){var e=a.FoldoutListItemView,f=a.ListItemView,g=e.extend({className:e.prototype.className+" dataset-collection",id:function(){return["dataset_collection",this.model.get("id")].join("-")},initialize:function(a){this.linkTarget=a.linkTarget||"_blank",this.hasUser=a.hasUser,e.prototype.initialize.call(this,a)},_renderSubtitle:function(){var a=$('
                            ');switch(this.model.get("collection_type")){case"list":return a.text(d("a list of datasets"));case"paired":return a.text(d("a pair of datasets"));case"list:paired":return a.text(d("a list of paired datasets"))}return a},_getFoldoutPanelOptions:function(){var a=e.prototype._getFoldoutPanelOptions.call(this);return _.extend(a,{linkTarget:this.linkTarget,hasUser:this.hasUser})},$selector:function(){return this.$("> .selector")},toString:function(){var a=this.model?this.model+"":"(no model)";return"DCListItemView("+a+")"}});g.prototype.templates=function(){var a=c.wrapTemplate(['
                            ','
                            ','<%- collection.element_identifier || collection.name %>',"
                            ",'
                            ',"
                            "],"collection");return _.extend({},e.prototype.templates,{titleBar:a})}();var h=f.extend({className:f.prototype.className+" dataset-collection-element",initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log("DCEListItemView.initialize:",a),f.prototype.initialize.call(this,a)},toString:function(){var a=this.model?this.model+"":"(no model)";return"DCEListItemView("+a+")"}});h.prototype.templates=function(){var a=c.wrapTemplate(['
                            ','
                            ','<%- element.element_identifier %>',"
                            ",'
                            ',"
                            "],"element");return _.extend({},f.prototype.templates,{titleBar:a})}();var i=b.DatasetListItemView.extend({className:b.DatasetListItemView.prototype.className+" dataset-collection-element",initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log("DatasetDCEListItemView.initialize:",a),b.DatasetListItemView.prototype.initialize.call(this,a)},toString:function(){var a=this.model?this.model+"":"(no model)";return"DatasetDCEListItemView("+a+")"}});i.prototype.templates=function(){var a=c.wrapTemplate(['
                            ','','
                            ','<%- element.element_identifier %>',"
                            ","
                            "],"element");return _.extend({},b.DatasetListItemView.prototype.templates,{titleBar:a})}();var j=g.extend({className:g.prototype.className+" dataset-collection-element",_swapNewRender:function(a){g.prototype._swapNewRender.call(this,a);var b=this.model.get("state")||"ok";return this.$el.addClass("state-"+b),this.$el},toString:function(){var a=this.model?this.model+"":"(no model)";return"NestedDCDCEListItemView("+a+")"}});return{DCListItemView:g,DCEListItemView:h,DatasetDCEListItemView:i,NestedDCDCEListItemView:j}}); +define(["mvc/list/list-item","mvc/dataset/dataset-li","mvc/base-mvc","utils/localization"],function(a,b,c,d){var e=a.FoldoutListItemView,f=a.ListItemView,g=e.extend({className:e.prototype.className+" dataset-collection",id:function(){return["dataset_collection",this.model.get("id")].join("-")},initialize:function(a){this.linkTarget=a.linkTarget||"_blank",this.hasUser=a.hasUser,e.prototype.initialize.call(this,a)},_renderSubtitle:function(){var a=$('
                            ');switch(this.model.get("collection_type")){case"list":return a.text(d("a list of datasets"));case"paired":return a.text(d("a pair of datasets"));case"list:paired":return a.text(d("a list of paired datasets"))}return a},_getFoldoutPanelOptions:function(){var a=e.prototype._getFoldoutPanelOptions.call(this);return _.extend(a,{linkTarget:this.linkTarget,hasUser:this.hasUser})},$selector:function(){return this.$("> .selector")},toString:function(){var a=this.model?this.model+"":"(no model)";return"DCListItemView("+a+")"}});g.prototype.templates=function(){var a=_.extend({},e.prototype.templates.warnings,{error:c.wrapTemplate(["<% if( model.error ){ %>",'
                            ',d("There was an error getting the data for this collection"),": <%- model.error %>","
                            ","<% } %>"]),purged:c.wrapTemplate(["<% if( model.purged ){ %>",'
                            ',d("This collection has been deleted and removed from disk"),"
                            ","<% } %>"]),deleted:c.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'
                            ',d("This collection has been deleted"),"
                            ","<% } %>"])}),b=c.wrapTemplate(['
                            ','
                            ','<%- collection.element_identifier || collection.name %>',"
                            ",'
                            ',"
                            "],"collection");return _.extend({},e.prototype.templates,{warnings:a,titleBar:b})}();var h=f.extend({className:f.prototype.className+" dataset-collection-element",initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log("DCEListItemView.initialize:",a),f.prototype.initialize.call(this,a)},toString:function(){var a=this.model?this.model+"":"(no model)";return"DCEListItemView("+a+")"}});h.prototype.templates=function(){var a=c.wrapTemplate(['
                            ','
                            ','<%- element.element_identifier %>',"
                            ",'
                            ',"
                            "],"element");return _.extend({},f.prototype.templates,{titleBar:a})}();var i=b.DatasetListItemView.extend({className:b.DatasetListItemView.prototype.className+" dataset-collection-element",initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log("DatasetDCEListItemView.initialize:",a),b.DatasetListItemView.prototype.initialize.call(this,a)},toString:function(){var a=this.model?this.model+"":"(no model)";return"DatasetDCEListItemView("+a+")"}});i.prototype.templates=function(){var a=c.wrapTemplate(['
                            ','','
                            ','<%- element.element_identifier %>',"
                            ","
                            "],"element");return _.extend({},b.DatasetListItemView.prototype.templates,{titleBar:a})}();var j=g.extend({className:g.prototype.className+" dataset-collection-element",_swapNewRender:function(a){g.prototype._swapNewRender.call(this,a);var b=this.model.get("state")||"ok";return this.$el.addClass("state-"+b),this.$el},toString:function(){var a=this.model?this.model+"":"(no model)";return"NestedDCDCEListItemView("+a+")"}});return{DCListItemView:g,DCEListItemView:h,DatasetDCEListItemView:i,NestedDCDCEListItemView:j}}); //# sourceMappingURL=../../../maps/mvc/collection/collection-li.js.map \ No newline at end of file diff --git a/static/scripts/mvc/history/hdca-li.js b/static/scripts/mvc/history/hdca-li.js index 7ea4d0700ac..b9dee5035f9 100644 --- a/static/scripts/mvc/history/hdca-li.js +++ b/static/scripts/mvc/history/hdca-li.js @@ -1,2 +1,2 @@ -define(["mvc/dataset/states","mvc/collection/collection-li","mvc/collection/collection-panel","mvc/base-mvc","utils/localization"],function(a,b,c,d){var e=b.DCListItemView,f=e.extend({className:e.prototype.className+" history-content",_getFoldoutPanelClass:function(){switch(this.model.get("collection_type")){case"list":return c.ListCollectionPanel;case"paired":return c.PairCollectionPanel;case"list:paired":return c.ListOfPairsCollectionPanel}throw new TypeError("Uknown collection_type: "+this.model.get("collection_type"))},_swapNewRender:function(b){e.prototype._swapNewRender.call(this,b);var c=this.model.get("state")||a.OK;return this.$el.addClass("state-"+c),this.$el},toString:function(){var a=this.model?this.model+"":"(no model)";return"HDCAListItemView("+a+")"}});return f.prototype.templates=function(){var a=d.wrapTemplate(['
                            ','','
                            ','<%- collection.hid %> ','<%- collection.name %>',"
                            ",'
                            ',"
                            "],"collection");return _.extend({},e.prototype.templates,{titleBar:a})}(),{HDCAListItemView:f}}); +define(["mvc/dataset/states","mvc/collection/collection-li","mvc/collection/collection-panel","mvc/base-mvc","utils/localization"],function(a,b,c,d,e){var f=b.DCListItemView,g=f.extend({className:f.prototype.className+" history-content",_getFoldoutPanelClass:function(){switch(this.model.get("collection_type")){case"list":return c.ListCollectionPanel;case"paired":return c.PairCollectionPanel;case"list:paired":return c.ListOfPairsCollectionPanel}throw new TypeError("Uknown collection_type: "+this.model.get("collection_type"))},_swapNewRender:function(b){f.prototype._swapNewRender.call(this,b);var c=this.model.get("state")||a.OK;return this.$el.addClass("state-"+c),this.$el},toString:function(){var a=this.model?this.model+"":"(no model)";return"HDCAListItemView("+a+")"}});return g.prototype.templates=function(){var a=_.extend({},f.prototype.templates.warnings,{hidden:d.wrapTemplate(["<% if( !collection.visible ){ %>",'
                            ',e("This collection has been hidden"),"
                            ","<% } %>"],"collection")}),b=d.wrapTemplate(['
                            ','','
                            ','<%- collection.hid %> ','<%- collection.name %>',"
                            ",'
                            ',"
                            "],"collection");return _.extend({},f.prototype.templates,{warnings:a,titleBar:b})}(),{HDCAListItemView:g}}); //# sourceMappingURL=../../../maps/mvc/history/hdca-li.js.map \ No newline at end of file From e36e51eeb128afd020f0ccfd9a936833c54b56c9 Mon Sep 17 00:00:00 2001 From: Carl Eberhard Date: Fri, 20 Mar 2015 15:59:52 -0400 Subject: [PATCH 5/5] Serializers, History: account for dataset collections when serializing 'empty'; UI, Collections: show deleted and hidden warnings in the list item views --- .../scripts/mvc/collection/collection-li.js | 11 +++++++ client/galaxy/scripts/mvc/history/hdca-li.js | 11 +++++++ .../scripts/mvc/history/history-contents.js | 6 ++-- lib/galaxy/managers/histories.py | 31 ++++++++++--------- .../maps/mvc/collection/collection-li.js.map | 2 +- static/maps/mvc/history/hdca-li.js.map | 2 +- .../maps/mvc/history/history-contents.js.map | 2 +- .../scripts/mvc/collection/collection-li.js | 2 +- static/scripts/mvc/history/hdca-li.js | 2 +- 9 files changed, 46 insertions(+), 23 deletions(-) diff --git a/client/galaxy/scripts/mvc/collection/collection-li.js b/client/galaxy/scripts/mvc/collection/collection-li.js index bd5c96075d1..b336db61a63 100644 --- a/client/galaxy/scripts/mvc/collection/collection-li.js +++ b/client/galaxy/scripts/mvc/collection/collection-li.js @@ -29,6 +29,17 @@ var DCListItemView = FoldoutListItemView.extend( FoldoutListItemView.prototype.initialize.call( this, attributes ); }, + /** event listeners */ + _setUpListeners : function(){ + FoldoutListItemView.prototype._setUpListeners.call( this ); + // re-rendering on deletion + this.model.on( 'change', function( model, options ){ + if( _.isEqual( _.keys( model.changed ), [ 'deleted' ] ) ){ + this.render(); + } + }, this ); + }, + // ......................................................................... rendering //TODO:?? possibly move to listItem /** render a subtitle to show the user what sort of collection this is */ diff --git a/client/galaxy/scripts/mvc/history/hdca-li.js b/client/galaxy/scripts/mvc/history/hdca-li.js index 6c38e6922d2..ee633d82e87 100644 --- a/client/galaxy/scripts/mvc/history/hdca-li.js +++ b/client/galaxy/scripts/mvc/history/hdca-li.js @@ -18,6 +18,17 @@ var HDCAListItemView = _super.extend( className : _super.prototype.className + " history-content", + /** event listeners */ + _setUpListeners : function(){ + _super.prototype._setUpListeners.call( this ); + // re-rendering on deletion + this.model.on( 'change', function( model, options ){ + if( _.isEqual( _.keys( model.changed ), [ 'visible' ] ) ){ + this.render(); + } + }, this ); + }, + /** Override to provide the proper collections panels as the foldout */ _getFoldoutPanelClass : function(){ switch( this.model.get( 'collection_type' ) ){ diff --git a/client/galaxy/scripts/mvc/history/history-contents.js b/client/galaxy/scripts/mvc/history/history-contents.js index acdbaa6f48e..165f5ff41a6 100644 --- a/client/galaxy/scripts/mvc/history/history-contents.js +++ b/client/galaxy/scripts/mvc/history/history-contents.js @@ -220,12 +220,12 @@ var HistoryContents = Backbone.Collection.extend( BASE_MVC.LoggableMixin ).exten source : contentType, type : type }) - .done( function( json ){ - collection.add([ json ]); + .done( function( response ){ + collection.add([ response ]); }) .fail( function( error, status, message ){ collection.trigger( 'error', collection, xhr, {}, - 'Error copying contents', { type: type, id: id, source: contentType }); + 'Error copying contents', { type: type, id: id, source: contentType }); }); return xhr; }, diff --git a/lib/galaxy/managers/histories.py b/lib/galaxy/managers/histories.py index fb12faf78aa..c50f69d5827 100644 --- a/lib/galaxy/managers/histories.py +++ b/lib/galaxy/managers/histories.py @@ -283,23 +283,24 @@ class HistorySerializer( sharable.SharableModelSerializer, deletable.PurgableSer deletable.PurgableSerializerMixin.add_serializers( self ) self.serializers.update({ - 'model_class': lambda *a: 'History', - 'id': self.serialize_id, - 'create_time': self.serialize_date, - 'update_time': self.serialize_date, - 'size': lambda t, i, k: int( i.get_disk_size() ), - 'nice_size': lambda t, i, k: i.get_disk_size( nice_size=True ), - 'state': lambda t, i, k: self.history_manager.get_history_state( t, i ), + 'model_class' : lambda *a: 'History', + 'id' : self.serialize_id, + 'create_time' : self.serialize_date, + 'update_time' : self.serialize_date, + 'size' : lambda t, i, k: int( i.get_disk_size() ), + 'nice_size' : lambda t, i, k: i.get_disk_size( nice_size=True ), + 'state' : lambda t, i, k: self.history_manager.get_history_state( t, i ), - 'url': lambda t, i, k: self.url_for( 'history', id=t.security.encode_id( i.id ) ), - 'contents_url': lambda t, i, k: self.url_for( 'history_contents', history_id=t.security.encode_id( i.id ) ), + 'url' : lambda t, i, k: self.url_for( 'history', id=t.security.encode_id( i.id ) ), + 'contents_url' : lambda t, i, k: self.url_for( 'history_contents', + history_id=t.security.encode_id( i.id ) ), - 'empty': lambda t, i, k: len( i.datasets ) <= 0, - 'count': lambda trans, item, key: len( item.datasets ), - 'hdas': lambda t, i, k: [ t.security.encode_id( hda.id ) for hda in i.datasets ], - 'state_details': lambda t, i, k: self.history_manager.get_state_counts( t, i ), - 'state_ids': lambda t, i, k: self.history_manager.get_state_ids( t, i ), - 'contents': self.serialize_contents + 'empty' : lambda t, i, k: ( len( i.datasets ) + len( i.dataset_collections ) ) <= 0, + 'count' : lambda trans, item, key: len( item.datasets ), + 'hdas' : lambda t, i, k: [ t.security.encode_id( hda.id ) for hda in i.datasets ], + 'state_details' : lambda t, i, k: self.history_manager.get_state_counts( t, i ), + 'state_ids' : lambda t, i, k: self.history_manager.get_state_ids( t, i ), + 'contents' : self.serialize_contents }) def serialize_contents( self, trans, history, *args ): diff --git 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                            ');switch(this.model.get("collection_type")){case"list":return a.text(d("a list of datasets"));case"paired":return a.text(d("a pair of datasets"));case"list:paired":return a.text(d("a list of paired datasets"))}return a},_getFoldoutPanelOptions:function(){var a=e.prototype._getFoldoutPanelOptions.call(this);return _.extend(a,{linkTarget:this.linkTarget,hasUser:this.hasUser})},$selector:function(){return this.$("> .selector")},toString:function(){var a=this.model?this.model+"":"(no model)";return"DCListItemView("+a+")"}});g.prototype.templates=function(){var a=_.extend({},e.prototype.templates.warnings,{error:c.wrapTemplate(["<% if( model.error ){ %>",'
                            ',d("There was an error getting the data for this collection"),": <%- model.error %>","
                            ","<% } %>"]),purged:c.wrapTemplate(["<% if( model.purged ){ %>",'
                            ',d("This collection has been deleted and removed from disk"),"
                            ","<% } %>"]),deleted:c.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'
                            ',d("This collection has been deleted"),"
                            ","<% } %>"])}),b=c.wrapTemplate(['
                            ','
                            ','<%- collection.element_identifier || collection.name %>',"
                            ",'
                            ',"
                            "],"collection");return _.extend({},e.prototype.templates,{warnings:a,titleBar:b})}();var h=f.extend({className:f.prototype.className+" dataset-collection-element",initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log("DCEListItemView.initialize:",a),f.prototype.initialize.call(this,a)},toString:function(){var a=this.model?this.model+"":"(no model)";return"DCEListItemView("+a+")"}});h.prototype.templates=function(){var a=c.wrapTemplate(['
                            ','
                            ','<%- element.element_identifier %>',"
                            ",'
                            ',"
                            "],"element");return _.extend({},f.prototype.templates,{titleBar:a})}();var i=b.DatasetListItemView.extend({className:b.DatasetListItemView.prototype.className+" dataset-collection-element",initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log("DatasetDCEListItemView.initialize:",a),b.DatasetListItemView.prototype.initialize.call(this,a)},toString:function(){var a=this.model?this.model+"":"(no model)";return"DatasetDCEListItemView("+a+")"}});i.prototype.templates=function(){var a=c.wrapTemplate(['
                            ','','
                            ','<%- element.element_identifier %>',"
                            ","
                            "],"element");return _.extend({},b.DatasetListItemView.prototype.templates,{titleBar:a})}();var j=g.extend({className:g.prototype.className+" dataset-collection-element",_swapNewRender:function(a){g.prototype._swapNewRender.call(this,a);var b=this.model.get("state")||"ok";return this.$el.addClass("state-"+b),this.$el},toString:function(){var a=this.model?this.model+"":"(no model)";return"NestedDCDCEListItemView("+a+")"}});return{DCListItemView:g,DCEListItemView:h,DatasetDCEListItemView:i,NestedDCDCEListItemView:j}}); +define(["mvc/list/list-item","mvc/dataset/dataset-li","mvc/base-mvc","utils/localization"],function(a,b,c,d){var e=a.FoldoutListItemView,f=a.ListItemView,g=e.extend({className:e.prototype.className+" dataset-collection",id:function(){return["dataset_collection",this.model.get("id")].join("-")},initialize:function(a){this.linkTarget=a.linkTarget||"_blank",this.hasUser=a.hasUser,e.prototype.initialize.call(this,a)},_setUpListeners:function(){e.prototype._setUpListeners.call(this),this.model.on("change",function(a){_.isEqual(_.keys(a.changed),["deleted"])&&this.render()},this)},_renderSubtitle:function(){var a=$('
                            ');switch(this.model.get("collection_type")){case"list":return a.text(d("a list of datasets"));case"paired":return a.text(d("a pair of datasets"));case"list:paired":return a.text(d("a list of paired datasets"))}return a},_getFoldoutPanelOptions:function(){var a=e.prototype._getFoldoutPanelOptions.call(this);return _.extend(a,{linkTarget:this.linkTarget,hasUser:this.hasUser})},$selector:function(){return this.$("> .selector")},toString:function(){var a=this.model?this.model+"":"(no model)";return"DCListItemView("+a+")"}});g.prototype.templates=function(){var a=_.extend({},e.prototype.templates.warnings,{error:c.wrapTemplate(["<% if( model.error ){ %>",'
                            ',d("There was an error getting the data for this collection"),": <%- model.error %>","
                            ","<% } %>"]),purged:c.wrapTemplate(["<% if( model.purged ){ %>",'
                            ',d("This collection has been deleted and removed from disk"),"
                            ","<% } %>"]),deleted:c.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'
                            ',d("This collection has been deleted"),"
                            ","<% } %>"])}),b=c.wrapTemplate(['
                            ','
                            ','<%- collection.element_identifier || collection.name %>',"
                            ",'
                            ',"
                            "],"collection");return _.extend({},e.prototype.templates,{warnings:a,titleBar:b})}();var h=f.extend({className:f.prototype.className+" dataset-collection-element",initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log("DCEListItemView.initialize:",a),f.prototype.initialize.call(this,a)},toString:function(){var a=this.model?this.model+"":"(no model)";return"DCEListItemView("+a+")"}});h.prototype.templates=function(){var a=c.wrapTemplate(['
                            ','
                            ','<%- element.element_identifier %>',"
                            ",'
                            ',"
                            "],"element");return _.extend({},f.prototype.templates,{titleBar:a})}();var i=b.DatasetListItemView.extend({className:b.DatasetListItemView.prototype.className+" dataset-collection-element",initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log("DatasetDCEListItemView.initialize:",a),b.DatasetListItemView.prototype.initialize.call(this,a)},toString:function(){var a=this.model?this.model+"":"(no model)";return"DatasetDCEListItemView("+a+")"}});i.prototype.templates=function(){var a=c.wrapTemplate(['
                            ','','
                            ','<%- element.element_identifier %>',"
                            ","
                            "],"element");return _.extend({},b.DatasetListItemView.prototype.templates,{titleBar:a})}();var j=g.extend({className:g.prototype.className+" dataset-collection-element",_swapNewRender:function(a){g.prototype._swapNewRender.call(this,a);var b=this.model.get("state")||"ok";return this.$el.addClass("state-"+b),this.$el},toString:function(){var a=this.model?this.model+"":"(no model)";return"NestedDCDCEListItemView("+a+")"}});return{DCListItemView:g,DCEListItemView:h,DatasetDCEListItemView:i,NestedDCDCEListItemView:j}}); //# sourceMappingURL=../../../maps/mvc/collection/collection-li.js.map \ No newline at end of file diff --git a/static/scripts/mvc/history/hdca-li.js b/static/scripts/mvc/history/hdca-li.js index b9dee5035f9..aa10e9096d2 100644 --- a/static/scripts/mvc/history/hdca-li.js +++ b/static/scripts/mvc/history/hdca-li.js @@ -1,2 +1,2 @@ -define(["mvc/dataset/states","mvc/collection/collection-li","mvc/collection/collection-panel","mvc/base-mvc","utils/localization"],function(a,b,c,d,e){var f=b.DCListItemView,g=f.extend({className:f.prototype.className+" history-content",_getFoldoutPanelClass:function(){switch(this.model.get("collection_type")){case"list":return c.ListCollectionPanel;case"paired":return c.PairCollectionPanel;case"list:paired":return c.ListOfPairsCollectionPanel}throw new TypeError("Uknown collection_type: "+this.model.get("collection_type"))},_swapNewRender:function(b){f.prototype._swapNewRender.call(this,b);var c=this.model.get("state")||a.OK;return this.$el.addClass("state-"+c),this.$el},toString:function(){var a=this.model?this.model+"":"(no model)";return"HDCAListItemView("+a+")"}});return g.prototype.templates=function(){var a=_.extend({},f.prototype.templates.warnings,{hidden:d.wrapTemplate(["<% if( !collection.visible ){ %>",'
                            ',e("This collection has been hidden"),"
                            ","<% } %>"],"collection")}),b=d.wrapTemplate(['
                            ','','
                            ','<%- collection.hid %> ','<%- collection.name %>',"
                            ",'
                            ',"
                            "],"collection");return _.extend({},f.prototype.templates,{warnings:a,titleBar:b})}(),{HDCAListItemView:g}}); +define(["mvc/dataset/states","mvc/collection/collection-li","mvc/collection/collection-panel","mvc/base-mvc","utils/localization"],function(a,b,c,d,e){var f=b.DCListItemView,g=f.extend({className:f.prototype.className+" history-content",_setUpListeners:function(){f.prototype._setUpListeners.call(this),this.model.on("change",function(a){_.isEqual(_.keys(a.changed),["visible"])&&this.render()},this)},_getFoldoutPanelClass:function(){switch(this.model.get("collection_type")){case"list":return c.ListCollectionPanel;case"paired":return c.PairCollectionPanel;case"list:paired":return c.ListOfPairsCollectionPanel}throw new TypeError("Uknown collection_type: "+this.model.get("collection_type"))},_swapNewRender:function(b){f.prototype._swapNewRender.call(this,b);var c=this.model.get("state")||a.OK;return this.$el.addClass("state-"+c),this.$el},toString:function(){var a=this.model?this.model+"":"(no model)";return"HDCAListItemView("+a+")"}});return g.prototype.templates=function(){var a=_.extend({},f.prototype.templates.warnings,{hidden:d.wrapTemplate(["<% if( !collection.visible ){ %>",'
                            ',e("This collection has been hidden"),"
                            ","<% } %>"],"collection")}),b=d.wrapTemplate(['
                            ','','
                            ','<%- collection.hid %> ','<%- collection.name %>',"
                            ",'
                            ',"
                            "],"collection");return _.extend({},f.prototype.templates,{warnings:a,titleBar:b})}(),{HDCAListItemView:g}}); //# sourceMappingURL=../../../maps/mvc/history/hdca-li.js.map \ No newline at end of file