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Add Functional Testing support for locally and ToolShed installed Data Managers.

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This commit is contained in:
Daniel Blankenberg
2013-12-10 12:59:29 -05:00
parent c058232f05
commit 3db7688a56
7 changed files with 202 additions and 8 deletions
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scripts/functional_tests.py
+24 -7
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@@ -335,6 +335,11 @@ def main():
except OSError:
pass
#Data Manager testing temp path
#For storing Data Manager outputs and .loc files so that real ones don't get clobbered
data_manager_test_tmp_path = tempfile.mkdtemp( prefix='data_manager_test_tmp', dir=galaxy_test_tmp_dir )
galaxy_data_manager_data_path = tempfile.mkdtemp( prefix='data_manager_tool-data', dir=data_manager_test_tmp_path )
# ---- Build Application --------------------------------------------------
master_api_key = os.environ.get( "GALAXY_TEST_MASTER_API_KEY", default_galaxy_master_key )
app = None
@@ -360,6 +365,7 @@ def main():
tool_config_file=tool_config_file,
tool_data_table_config_path=tool_data_table_config_path,
tool_path=tool_path,
galaxy_data_manager_data_path=galaxy_data_manager_data_path,
tool_parse_help=False,
update_integrated_tool_panel=False,
use_heartbeat=False,
@@ -469,13 +475,24 @@ def main():
functional.test_workflow.WorkflowTestCase.workflow_test_file = workflow_test
functional.test_workflow.WorkflowTestCase.master_api_key = master_api_key
functional.test_workflow.WorkflowTestCase.user_api_key = os.environ.get( "GALAXY_TEST_USER_API_KEY", default_galaxy_user_key )
import functional.test_toolbox
functional.test_toolbox.toolbox = app.toolbox
functional.test_toolbox.build_tests(
testing_shed_tools=testing_shed_tools,
master_api_key=master_api_key,
user_api_key=os.environ.get( "GALAXY_TEST_USER_API_KEY", default_galaxy_user_key ),
)
data_manager_test = __check_arg( '-data_managers', param=False )
if data_manager_test:
import functional.test_data_managers
functional.test_data_managers.data_managers = app.data_managers #seems like a hack...
functional.test_data_managers.build_tests(
tmp_dir=data_manager_test_tmp_path,
testing_shed_tools=testing_shed_tools,
master_api_key=master_api_key,
user_api_key=os.environ.get( "GALAXY_TEST_USER_API_KEY", default_galaxy_user_key ),
)
else: #when testing data managers, do not test toolbox
import functional.test_toolbox
functional.test_toolbox.toolbox = app.toolbox
functional.test_toolbox.build_tests(
testing_shed_tools=testing_shed_tools,
master_api_key=master_api_key,
user_api_key=os.environ.get( "GALAXY_TEST_USER_API_KEY", default_galaxy_user_key ),
)
test_config = nose.config.Config( env=os.environ, ignoreFiles=ignore_files, plugins=nose.plugins.manager.DefaultPluginManager() )
test_config.configure( sys.argv )
result = run_tests( test_config )