From 3b70b41f7d2f0d6819fa9ddf5e321c96fcee096a Mon Sep 17 00:00:00 2001
From: Daniel Blankenberg <dan@bx.psu.edu>
Date: Mon, 28 Jun 2010 11:50:25 -0400
Subject: [PATCH] Update UCSC table browser datasource tools to treat data
 marked as 'gff' as 'gtf'.

---
 tools/data_source/ucsc_tablebrowser.xml         | 1 +
 tools/data_source/ucsc_tablebrowser_archaea.xml | 1 +
 tools/data_source/ucsc_tablebrowser_test.xml    | 1 +
 3 files changed, 3 insertions(+)

diff --git a/tools/data_source/ucsc_tablebrowser.xml b/tools/data_source/ucsc_tablebrowser.xml
index 5ede22d3052..4548ce3899e 100644
--- a/tools/data_source/ucsc_tablebrowser.xml
+++ b/tools/data_source/ucsc_tablebrowser.xml
@@ -30,6 +30,7 @@
                 <value galaxy_value="interval" remote_value="tab" />
                 <value galaxy_value="html" remote_value="hyperlinks" />
                 <value galaxy_value="fasta" remote_value="sequence" />
+                <value galaxy_value="gtf" remote_value="gff" />
             </value_translation>
         </request_param>
 	</request_param_translation>
diff --git a/tools/data_source/ucsc_tablebrowser_archaea.xml b/tools/data_source/ucsc_tablebrowser_archaea.xml
index 9bc35bb7a4d..579ef634f0c 100644
--- a/tools/data_source/ucsc_tablebrowser_archaea.xml
+++ b/tools/data_source/ucsc_tablebrowser_archaea.xml
@@ -30,6 +30,7 @@
                 <value galaxy_value="interval" remote_value="tab" />
                 <value galaxy_value="html" remote_value="hyperlinks" />
                 <value galaxy_value="fasta" remote_value="sequence" />
+                <value galaxy_value="gtf" remote_value="gff" />
             </value_translation>
         </request_param>
     </request_param_translation>
diff --git a/tools/data_source/ucsc_tablebrowser_test.xml b/tools/data_source/ucsc_tablebrowser_test.xml
index 00df5f80281..c6e6794a39a 100644
--- a/tools/data_source/ucsc_tablebrowser_test.xml
+++ b/tools/data_source/ucsc_tablebrowser_test.xml
@@ -30,6 +30,7 @@
                 <value galaxy_value="interval" remote_value="tab" />
                 <value galaxy_value="html" remote_value="hyperlinks" />
                 <value galaxy_value="fasta" remote_value="sequence" />
+                <value galaxy_value="gtf" remote_value="gff" />
             </value_translation>
         </request_param>
     </request_param_translation>