From 3ab46acf40e04d3b24e672cbbf5c47670ffb3ba2 Mon Sep 17 00:00:00 2001
From: Anup Kumar <anup.rulez@gmail.com>
Date: Fri, 5 Feb 2021 15:52:41 +0100
Subject: [PATCH] Add tool and default ipynb file

---
 tools/interactive/default_notebook_ml.ipynb   | 49 +++++++++++++++++++
 .../interactivetool_ml_jupyter_notebook.xml   |  6 +--
 2 files changed, 52 insertions(+), 3 deletions(-)
 create mode 100644 tools/interactive/default_notebook_ml.ipynb

diff --git a/tools/interactive/default_notebook_ml.ipynb b/tools/interactive/default_notebook_ml.ipynb
new file mode 100644
index 00000000000..7729f6e2e7a
--- /dev/null
+++ b/tools/interactive/default_notebook_ml.ipynb
@@ -0,0 +1,49 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "uniform-equivalent",
+   "metadata": {},
+   "source": [
+    "# Welcome to the interactive Galaxy IPython Notebook for Machine Learning."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "attended-evolution",
+   "metadata": {},
+   "source": [
+    "More help and informations can be found on the project [website](https://github.com/anuprulez/ml-jupyter-notebook)."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "excited-composer",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.8.6"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tools/interactive/interactivetool_ml_jupyter_notebook.xml b/tools/interactive/interactivetool_ml_jupyter_notebook.xml
index 6e609f0f2c1..4b80f54b407 100644
--- a/tools/interactive/interactivetool_ml_jupyter_notebook.xml
+++ b/tools/interactive/interactivetool_ml_jupyter_notebook.xml
@@ -1,6 +1,6 @@
 <tool id="interactive_ml_tool_jupyter_notebook" tool_type="interactive" name="Interactive Machine Learning Jupyter Notebook" version="0.1">
     <requirements>
-        <container type="docker">docker.io/anupkumar/sample-docker-ml-jupyter</container>
+        <container type="docker">docker.io/anupkumar/sample-docker-ml-jupyter:latest</container>
     </requirements>
     <entry_points>
         <entry_point name="Jupyter Interactive Tool" requires_domain="True">
@@ -30,8 +30,8 @@
         export PATH=/home/jovyan/.local/bin:\$PATH &&
 
         #if $mode.mode_select == 'scratch':
-            ## copy default notebook
-            cp '$__tool_directory__/default_notebook.ipynb' ./ipython_galaxy_notebook.ipynb &&
+            ## copy default notebook ml
+            cp '$__tool_directory__/default_notebook_ml.ipynb' ./ipython_galaxy_notebook.ipynb &&
             jupyter trust ./ipython_galaxy_notebook.ipynb &&
             jupyter lab --allow-root --no-browser --NotebookApp.shutdown_button=True &&
             cp ./ipython_galaxy_notebook.ipynb '$jupyter_notebook'