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Added new Subtract Whole Query tool. Also some miscellaneous code clean-up.
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@@ -0,0 +1,10 @@
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chr1 4225 19670
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chr10 6 8
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chr1 24417 24420
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chr6_hla_hap2 0 150
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chr2 1 5
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chr10 2 10
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chr1 30 55
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chrY 1 20
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chr1 1225979 42287290
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chr10 7 8
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