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Next rev of codingSnps tool.

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This commit is contained in:
Greg Von Kuster
2010-03-24 14:14:58 -04:00
parent 47463daa73
commit 35d0ac21c9
2 changed files with 124 additions and 146 deletions
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tools/evolution/codingSnps.xml
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@@ -1,7 +1,7 @@
<tool id="codingSnps" name="Amino-acid changes">
<description>caused by a set of SNPs</description>
<command interpreter="perl">
codingSnps.pl $input1 $input2 ${GALAXY_DATA_INDEX_DIR}/codingSnps.loc chr=${input1.metadata.chromCol} start=${input1.metadata.startCol} end=${input1.metadata.endCol} snp=$col1 $out_file1
codingSnps.pl $input1 $input2 Galaxy build=${input1.metadata.dbkey} loc=${GALAXY_DATA_INDEX_DIR}/codingSnps.loc chr=${input1.metadata.chromCol} start=${input1.metadata.startCol} end=${input1.metadata.endCol} snp=$col1 > $out_file1
</command>
<inputs>
<param format="interval" name="input1" type="data" label="SNPs"/>