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[Peter Cock] Filtering tool: Only cast used columns. Fix valid lines and skipped info lines. [Kanwei] Add new testcases to test this behavior. Fixes #537. Fixes #535

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This commit is contained in:
Kanwei Li
2011-05-27 10:47:17 +02:00
parent 5432bb543f
commit 34155271b3
4 changed files with 36 additions and 18 deletions
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test-data/filter1_inbad.bed
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# Should skip this line
chr22 30120223 30120265 CCDS13897.1_cds_0_0_chr22_30120224_f 0 +
chr22 foo foo foo foo foo
chr22 30160419 30160661 CCDS13898.1_cds_0_0_chr22_30160420_r 0 -
chr22 30665273 30665360 CCDS13901.1_cds_0_0_chr22_30665274_f 0 +
chr22 30939054 30939266 CCDS13903.1_cds_0_0_chr22_30939055_r 0 -
test-data/filter1_test4.bed
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chr22 30120223 30120265 CCDS13897.1_cds_0_0_chr22_30120224_f 0 +
chr22 foo foo foo foo foo
chr22 30160419 30160661 CCDS13898.1_cds_0_0_chr22_30160420_r 0 -
chr22 30665273 30665360 CCDS13901.1_cds_0_0_chr22_30665274_f 0 +
chr22 30939054 30939266 CCDS13903.1_cds_0_0_chr22_30939055_r 0 -