diff --git a/tools/rgenetics/rgCaCo.xml b/tools/rgenetics/rgCaCo.xml index 78355f572dc..4a0aac2a784 100644 --- a/tools/rgenetics/rgCaCo.xml +++ b/tools/rgenetics/rgCaCo.xml @@ -1,4 +1,5 @@ + plink for unrelated subjects rgCaCo.py '$i.extra_files_path/$i.metadata.base_name' "$title" '$out_file1' '$logf' '$logf.files_path' '$gffout' diff --git a/tools/rgenetics/rgClean.xml b/tools/rgenetics/rgClean.xml index 855c397fd6c..98566157c8a 100644 --- a/tools/rgenetics/rgClean.xml +++ b/tools/rgenetics/rgClean.xml @@ -1,4 +1,5 @@ + plink filter markers, subjects diff --git a/tools/rgenetics/rgGLM.xml b/tools/rgenetics/rgGLM.xml index 46931655837..ab72f486d40 100644 --- a/tools/rgenetics/rgGLM.xml +++ b/tools/rgenetics/rgGLM.xml @@ -1,4 +1,5 @@ + plink for genotype data diff --git a/tools/rgenetics/rgLDIndep.xml b/tools/rgenetics/rgLDIndep.xml index abf9f225a1d..144edfad544 100644 --- a/tools/rgenetics/rgLDIndep.xml +++ b/tools/rgenetics/rgLDIndep.xml @@ -1,4 +1,5 @@ + plink filter high LD pairs - decrease redundancy diff --git a/tools/rgenetics/rgQC.xml b/tools/rgenetics/rgQC.xml index 4d20c9d2423..19b243db57f 100644 --- a/tools/rgenetics/rgQC.xml +++ b/tools/rgenetics/rgQC.xml @@ -1,5 +1,6 @@ - + plink + Marker and Subject measures diff --git a/tools/rgenetics/rgTDT.xml b/tools/rgenetics/rgTDT.xml index 4abb5d83958..18d36c6f5bd 100644 --- a/tools/rgenetics/rgTDT.xml +++ b/tools/rgenetics/rgTDT.xml @@ -1,4 +1,6 @@ + plink + for family data