From 2ddf4e02fc6e8ee1cb28b1cf78146efe0a8e16ab Mon Sep 17 00:00:00 2001 From: guerler Date: Tue, 17 May 2016 11:24:11 -0400 Subject: [PATCH] Upgrade shared ui libraries, add test cases --- client/galaxy/scripts/mvc/form/form-input.js | 26 ++--- .../scripts/mvc/form/form-parameters.js | 3 +- client/galaxy/scripts/mvc/form/form-view.js | 17 +--- .../galaxy/scripts/mvc/tool/tool-form-base.js | 40 +++++--- .../galaxy/scripts/mvc/tool/tool-template.js | 72 -------------- client/galaxy/scripts/mvc/ui/ui-misc.js | 11 ++- .../scripts/mvc/ui/ui-select-content.js | 94 +++++++++++++------ client/galaxy/scripts/utils/utils.js | 11 ++- client/galaxy/style/less/ui.less | 26 ++--- static/maps/mvc/form/form-input.js.map | 2 +- static/maps/mvc/form/form-parameters.js.map | 2 +- static/maps/mvc/form/form-view.js.map | 2 +- static/maps/mvc/tool/tool-form-base.js.map | 2 +- static/maps/mvc/ui/ui-misc.js.map | 2 +- static/maps/mvc/ui/ui-select-content.js.map | 2 +- static/maps/utils/utils.js.map | 2 +- static/scripts/bundled/analysis.bundled.js | 22 ++--- .../scripts/bundled/analysis.bundled.js.map | 2 +- static/scripts/bundled/libs.bundled.js | 12 +-- static/scripts/bundled/libs.bundled.js.map | 2 +- static/scripts/bundled/login.bundled.js | 2 +- static/scripts/bundled/login.bundled.js.map | 2 +- static/scripts/mvc/form/form-input.js | 2 +- static/scripts/mvc/form/form-parameters.js | 2 +- static/scripts/mvc/form/form-view.js | 2 +- static/scripts/mvc/tool/tool-form-base.js | 2 +- static/scripts/mvc/ui/ui-misc.js | 2 +- static/scripts/mvc/ui/ui-select-content.js | 2 +- static/scripts/utils/utils.js | 2 +- static/style/blue/base.css | 2 +- test/qunit/test-app.js | 2 +- test/qunit/test-data/fakeserver.js | 2 +- test/qunit/tests/form_tests.js | 25 ++++- test/qunit/tests/modal_tests.js | 14 +-- test/qunit/tests/ui_tests.js | 13 +-- 35 files changed, 212 insertions(+), 216 deletions(-) delete mode 100644 client/galaxy/scripts/mvc/tool/tool-template.js diff --git a/client/galaxy/scripts/mvc/form/form-input.js b/client/galaxy/scripts/mvc/form/form-input.js index 6bee9c35a39..979ce0ef063 100644 --- a/client/galaxy/scripts/mvc/form/form-input.js +++ b/client/galaxy/scripts/mvc/form/form-input.js @@ -46,10 +46,10 @@ define([], function() { }); }, - /** Disable input element + /** Set backdrop for input element */ - disable: function( silent ) { - this.model.set( 'backdrop', silent ? 'silent' : 'default' ); + backdrop: function() { + this.model.set( 'backdrop', true ); }, /** Set error text @@ -73,21 +73,21 @@ define([], function() { help_text += ' (' + help_argument + ')'; } this.$info.html( help_text ); - // render input field - this.field.collapsed ? this.$field.hide() : this.$field.fadeIn( 'fast' ); // render preview view for collapsed fields - this.$preview[ this.field.collapsed && this.model.get( 'collapsible_preview' ) ? 'show' : 'hide' ]() + this.$preview[ ( this.field.collapsed && this.model.get( 'collapsible_preview' ) || this.model.get( 'disabled' ) ) ? 'show' : 'hide' ]() .html( _.escape( this.model.get( 'text_value' ) ) ); // render error messages var error_text = this.model.get( 'error_text' ); this.$error[ error_text ? 'show' : 'hide' ](); this.$el[ error_text ? 'addClass' : 'removeClass' ]( 'ui-error' ); this.$error_text.html( error_text ); - // render backdrop to disable field - this.$backdrop.removeClass() - .addClass( 'ui-form-backdrop' ) - .addClass( 'ui-form-backdrop-' + this.model.get( 'backdrop' ) ); - // render collapsible state and title + // render backdrop + this.$backdrop[ this.model.get( 'backdrop' ) ? 'show' : 'hide' ](); + // render input field + this.field.collapsed || this.model.get( 'disabled' ) ? this.$field.hide() : this.$field.fadeIn( 'fast' ); + // render input field color and style + this.field.model && this.field.model.set( { 'color': this.model.get( 'color' ), 'style': this.model.get( 'style' ) } ); + // render collapsible options if ( !this.model.get( 'disabled' ) && this.model.get( 'collapsible_value' ) !== undefined ) { var collapsible_state = this.field.collapsed ? 'enable' : 'disable'; this.$title_text.hide(); @@ -118,9 +118,9 @@ define([], function() { ) .append( $( '
' ).addClass( 'ui-form-field' ) .append( $( '' ).addClass( 'ui-form-info' ) ) - .append( $( '' ).addClass( 'ui-form-backdrop' ) ) + .append( $( '
' ).addClass( 'ui-form-backdrop' ) ) ) .append( $( '
' ).addClass( 'ui-form-preview' ) ); } }); -}); +}); \ No newline at end of file diff --git a/client/galaxy/scripts/mvc/form/form-parameters.js b/client/galaxy/scripts/mvc/form/form-parameters.js index 77be8498e1e..ecbb0059e17 100644 --- a/client/galaxy/scripts/mvc/form/form-parameters.js +++ b/client/galaxy/scripts/mvc/form/form-parameters.js @@ -60,6 +60,7 @@ define(['utils/utils', optional : input_def.optional, multiple : input_def.multiple, type : input_def.type, + flavor : input_def.flavor, data : input_def.options, onchange : function() { self.app.trigger( 'change' ); @@ -248,4 +249,4 @@ define(['utils/utils', return { View: View }; -}); +}); \ No newline at end of file diff --git a/client/galaxy/scripts/mvc/form/form-view.js b/client/galaxy/scripts/mvc/form/form-view.js index daee82326b4..e207fafffaf 100644 --- a/client/galaxy/scripts/mvc/form/form-view.js +++ b/client/galaxy/scripts/mvc/form/form-view.js @@ -10,7 +10,6 @@ define(['utils/utils', 'mvc/ui/ui-portlet', 'mvc/ui/ui-misc', 'mvc/form/form-sec cls : 'ui-portlet-limited', icon : null }); - this.modal = ( parent.Galaxy && parent.Galaxy.modal ) || new Ui.Modal.View(); this.setElement('
'); this.render(); }, @@ -69,18 +68,11 @@ define(['utils/utils', 'mvc/ui/ui-portlet', 'mvc/ui/ui-misc', 'mvc/form/form-sec /** Highlight and scroll to input element (currently only used for error notifications) */ highlight: function (input_id, message, silent) { - // get input field var input_element = this.element_list[input_id]; - - // check input element if (input_element) { - // mark error input_element.error(message || 'Please verify this parameter.'); - - // trigger expand event for parent containers + this.portlet.expand(); this.trigger('expand', input_id); - - // scroll to first input element if (!silent) { if (self==top) { var $panel = this.$el.parents().filter(function() { @@ -97,10 +89,7 @@ define(['utils/utils', 'mvc/ui/ui-portlet', 'mvc/ui/ui-misc', 'mvc/form/form-sec /** Highlights errors */ errors: function(options) { - // hide previous error statements this.trigger('reset'); - - // highlight all errors if (options && options.errors) { var error_messages = this.data.matchResponse(options.errors); for (var input_id in this.element_list) { @@ -147,9 +136,9 @@ define(['utils/utils', 'mvc/ui/ui-portlet', 'mvc/ui/ui-misc', 'mvc/form/form-sec // add listener which triggers on checksum change var current_check = this.data.checksum(); - this.on('change', function() { + this.on('change', function( force ) { var new_check = self.data.checksum(); - if (new_check != current_check) { + if (new_check != current_check || force ) { current_check = new_check; self.options.onchange && self.options.onchange(); } diff --git a/client/galaxy/scripts/mvc/tool/tool-form-base.js b/client/galaxy/scripts/mvc/tool/tool-form-base.js index 8f8a146760d..0da76095c4f 100644 --- a/client/galaxy/scripts/mvc/tool/tool-form-base.js +++ b/client/galaxy/scripts/mvc/tool/tool-form-base.js @@ -2,8 +2,8 @@ This is the base class of the tool form plugin. This class is e.g. inherited by the regular and the workflow tool form. */ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view', - 'mvc/tool/tool-template', 'mvc/citation/citation-model', 'mvc/citation/citation-view'], - function(Utils, Deferred, Ui, FormBase, ToolTemplate, CitationModel, CitationView) { + 'mvc/citation/citation-model', 'mvc/citation/citation-view'], + function(Utils, Deferred, Ui, FormBase, CitationModel, CitationView) { return FormBase.extend({ initialize: function(options) { var self = this; @@ -11,9 +11,6 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view', this.deferred = new Deferred(); if (options.inputs) { this._buildForm(options); - options.needs_update && this.deferred.execute( function( process ) { - self._updateModel( process ); - }); } else { this.deferred.execute(function(process) { self._buildModel(process, options, true); @@ -74,8 +71,7 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view', } // get initial model - Utils.request({ - type : 'GET', + Utils.get({ url : build_url, data : build_data, success : function(new_model) { @@ -245,11 +241,12 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view', title : 'Requirements', tooltip : 'Display tool requirements', onclick : function() { - if (!this.visible) { + if (!this.visible || self.portlet.collapsed ) { this.visible = true; + self.portlet.expand(); self.message.update({ persistent : true, - message : ToolTemplate.requirements(options), + message : self._templateRequirements(options), status : 'info' }); } else { @@ -284,7 +281,7 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view', */ _footer: function() { var options = this.options; - var $el = $( '
' ).append( ToolTemplate.help( options ) ); + var $el = $( '
' ).append( this._templateHelp( options ) ); if ( options.citations ) { var $citations = $( '
' ); var citations = new CitationModel.ToolCitationCollection(); @@ -295,6 +292,27 @@ define(['utils/utils', 'utils/deferred', 'mvc/ui/ui-misc', 'mvc/form/form-view', $el.append( $citations ); } return $el; + }, + + /** Templates + */ + _templateHelp: function( options ) { + var $tmpl = $( '
' ).addClass( 'ui-form-help' ).append( options.help ); + $tmpl.find( 'a' ).attr( 'target', '_blank' ); + return $tmpl; + }, + + _templateRequirements: function( options ) { + var nreq = options.requirements.length; + if ( nreq > 0 ) { + var requirements_message = 'This tool requires '; + _.each( options.requirements, function( req, i ) { + requirements_message += req.name + ( req.version ? ' (Version ' + req.version + ')' : '' ) + ( i < nreq - 2 ? ', ' : ( i == nreq - 2 ? ' and ' : '' ) ); + }); + var requirements_link = $( '' ).attr( 'target', '_blank' ).attr( 'href', 'https://wiki.galaxyproject.org/Tools/Requirements' ).text( 'here' ); + return $( '' ).append( requirements_message + '. Click ' ).append( requirements_link ).append( ' for more information.' ); + } + return 'No requirements found.'; } }); -}); +}); \ No newline at end of file diff --git a/client/galaxy/scripts/mvc/tool/tool-template.js b/client/galaxy/scripts/mvc/tool/tool-template.js deleted file mode 100644 index 26171439a69..00000000000 --- a/client/galaxy/scripts/mvc/tool/tool-template.js +++ /dev/null @@ -1,72 +0,0 @@ -// dependencies -define([], function() { - -// tool form templates -return { - help: function( options ) { - var $tmpl = $( '
' ).addClass( 'ui-form-help' ).append( options.help ); - $tmpl.find( 'a' ).attr( 'target', '_blank' ); - return $tmpl; - }, - - success: function(response) { - // check - if (!response.jobs || !response.jobs.length) { - return this.error(response); - } - - // number of jobs - var njobs = response.jobs.length; - - // job count info text - var njobs_text = ''; - if (njobs == 1) { - njobs_text = '1 job has'; - } else { - njobs_text = njobs + ' jobs have'; - } - - // create template string - var tmpl = '
' + - '

' + njobs_text + ' been successfully added to the queue - resulting in the following datasets:

'; - for (var i in response.outputs) { - tmpl += '

' + response.outputs[i].hid + ': ' + response.outputs[i].name + '

'; - } - tmpl += '

You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from \'running\' to \'finished\' if completed successfully or \'error\' if problems were encountered.

' + - '
'; - - // return success message element - return tmpl; - }, - - error: function(response) { - return '
' + - '

' + - 'The server could not complete the request. Please contact the Galaxy Team if this error persists.' + - '

' + - '' + - '
'; - }, - - requirements: function(options) { - var requirements_message = 'This tool requires '; - for (var i in options.requirements) { - var req = options.requirements[i]; - requirements_message += req.name; - if (req.version) { - requirements_message += ' (Version ' + req.version + ')'; - } - if (i < options.requirements.length - 2) { - requirements_message += ', '; - } - if (i == options.requirements.length - 2) { - requirements_message += ' and '; - } - } - return requirements_message + '. Click here for more information.'; - } -}; - -}); \ No newline at end of file diff --git a/client/galaxy/scripts/mvc/ui/ui-misc.js b/client/galaxy/scripts/mvc/ui/ui-misc.js index 7f43109707d..42c2fa5da88 100644 --- a/client/galaxy/scripts/mvc/ui/ui-misc.js +++ b/client/galaxy/scripts/mvc/ui/ui-misc.js @@ -86,7 +86,9 @@ define(['utils/utils', disabled : false, visible : true, cls : '', - area : false + area : false, + color : null, + style : null }).set( options ); this.tagName = this.model.get( 'area' ) ? 'textarea' : 'input'; this.setElement( $( '<' + this.tagName + '/>' ) ); @@ -104,9 +106,12 @@ define(['utils/utils', this.$el.removeClass() .addClass( 'ui-' + this.tagName ) .addClass( this.model.get( 'cls' ) ) + .addClass( this.model.get( 'style' ) ) .attr( 'id', this.model.id ) .attr( 'type', this.model.get( 'type' ) ) - .attr( 'placeholder', this.model.get( 'placeholder' ) ); + .attr( 'placeholder', this.model.get( 'placeholder' ) ) + .css( 'color', this.model.get( 'color' ) || '' ) + .css( 'border-color', this.model.get( 'color' ) || '' ); if ( this.model.get( 'value' ) !== this.$el.val() ) { this.$el.val( this.model.get( 'value' ) ); } @@ -159,4 +164,4 @@ define(['utils/utils', Slider : Slider, Drilldown : Drilldown } -}); +}); \ No newline at end of file diff --git a/client/galaxy/scripts/mvc/ui/ui-select-content.js b/client/galaxy/scripts/mvc/ui/ui-select-content.js index 3bbddba883b..31d136ca734 100644 --- a/client/galaxy/scripts/mvc/ui/ui-select-content.js +++ b/client/galaxy/scripts/mvc/ui/ui-select-content.js @@ -1,22 +1,31 @@ define([ 'utils/utils', 'mvc/ui/ui-misc', 'mvc/ui/ui-select-default' ], function( Utils, Ui, Select ) { +/** Batch mode variations */ +var Batch = { DISABLED: 'disabled', ENABLED: 'enabled', LINKED: 'linked' }; + /** List of available content selectors options */ var Configurations = { - 'data': [ - { src: 'hda', icon: 'fa-file-o', tooltip: 'Single dataset', batchmode: false, multiple: false }, - { src: 'hda', icon: 'fa-files-o', tooltip: 'Multiple datasets', batchmode: true, multiple: true }, - { src: 'hdca', icon: 'fa-folder-o', tooltip: 'Dataset collection', batchmode: true, multiple: false } ], - 'data_multiple': [ - { src: 'hda', icon: 'fa-files-o', tooltip: 'Multiple datasets', batchmode: false, multiple: true }, - { src: 'hdca', icon: 'fa-folder-o', tooltip: 'Dataset collection', batchmode: false, multiple: false } ], - 'data_collection': [ - { src: 'hdca', icon: 'fa-folder-o', tooltip: 'Dataset collection', batchmode: false, multiple: false } ], - 'workflow_data': [ - { src: 'hda', icon: 'fa-file-o', tooltip: 'Single dataset', batchmode: false, multiple: false }, - { src: 'hda', icon: 'fa-files-o', tooltip: 'Multiple datasets', batchmode: true, multiple: true } ], - 'workflow_collection': [ - { src: 'hdca', icon: 'fa-folder-o', tooltip: 'Dataset collection', batchmode: false, multiple: false }, - { src: 'hdca', icon: 'fa-folder', tooltip: 'Multiple collections', batchmode: true, multiple: true } ] + data: [ + { src: 'hda', icon: 'fa-file-o', tooltip: 'Single dataset', multiple: false, batch: Batch.DISABLED }, + { src: 'hda', icon: 'fa-files-o', tooltip: 'Multiple datasets', multiple: true, batch: Batch.LINKED }, + { src: 'hdca', icon: 'fa-folder-o', tooltip: 'Dataset collection', multiple: false, batch: Batch.LINKED } ], + data_multiple: [ + { src: 'hda', icon: 'fa-files-o', tooltip: 'Multiple datasets', multiple: true, batch: Batch.DISABLED }, + { src: 'hdca', icon: 'fa-folder-o', tooltip: 'Dataset collection', multiple: false, batch: Batch.DISABLED } ], + data_collection: [ + { src: 'hdca', icon: 'fa-folder-o', tooltip: 'Dataset collection', multiple: false, batch: Batch.DISABLED } ], + workflow_data: [ + { src: 'hda', icon: 'fa-file-o', tooltip: 'Single dataset', multiple: false, batch: Batch.DISABLED } ], + workflow_data_multiple: [ + { src: 'hda', icon: 'fa-files-o', tooltip: 'Multiple datasets', multiple: true, batch: Batch.DISABLED } ], + workflow_data_collection: [ + { src: 'hdca', icon: 'fa-folder-o', tooltip: 'Dataset collection', multiple: false, batch: Batch.DISABLED } ], + module_data: [ + { src: 'hda', icon: 'fa-file-o', tooltip: 'Single dataset', multiple: false, batch: Batch.DISABLED }, + { src: 'hda', icon: 'fa-files-o', tooltip: 'Multiple datasets', multiple: true, batch: Batch.ENABLED } ], + module_data_collection: [ + { src: 'hdca', icon: 'fa-folder-o', tooltip: 'Dataset collection', multiple: false, batch: Batch.DISABLED }, + { src: 'hdca', icon: 'fa-folder', tooltip: 'Multiple collections', multiple: true, batch: Batch.ENABLED } ] }; /** View for hda and hdca content selector ui elements */ @@ -27,9 +36,22 @@ var View = Backbone.View.extend({ src_labels: { 'hda' : 'dataset', 'hdca': 'dataset collection' } }).set( options ); this.setElement( $( '
' ).addClass( 'ui-select-content' ) ); - this.$batch = $( '
' ).addClass( 'ui-form-info' ) - .append( $( '' ).addClass( 'fa fa-sitemap' ) ) - .append( $( '' ).html( 'This is a batch mode input field. A separate job will be triggered for each dataset.' ) ); + this.button_product = new Ui.RadioButton.View( { + value : 'true', + data : [ { icon: 'fa fa-chain', value: 'true', + tooltip: 'Linked inputs will be run in matched order with other datasets e.g. use this for matching forward and reverse reads.' }, + { icon: 'fa fa-chain-broken', value: 'false', + tooltip: 'Unlinked dataset inputs will be run against *all* other inputs.' } ] } ); + var $batch_div = $( '
' ).addClass( 'ui-form-info' ) + .append( $( '' ).addClass( 'fa fa-sitemap' ) ) + .append( $( '' ).html( 'This is a batch mode input field. Separate jobs will be triggered for each dataset selection.' ) ); + this.$batch = { + linked : $batch_div.clone(), + enabled : $batch_div.clone().append( $( '
' ) + .append( $( '
' ).addClass( 'ui-form-title' ).html( 'Batch options:' ) ) + .append( this.button_product.$el ) ) + .append( $( '
' ).css( 'clear', 'both' ) ) + }; // track current history elements this.history = {}; @@ -76,13 +98,13 @@ var View = Backbone.View.extend({ if (id_list !== null) { id_list = $.isArray( id_list ) ? id_list : [ id_list ]; if ( id_list.length > 0 ) { - var result = { batch: this._batch(), values: [] }; + var result = this._batch( { values: [] } ); for ( var i in id_list ) { var details = this.history[ id_list[ i ] + '_' + this.config[ current ].src ]; if ( details ) { result.values.push( details ); } else { - Galaxy.emit.debug( 'tools-select-content::value()', 'Requested details not found for \'' + id_list[ i ] + '\'.' ); + Galaxy.emit.debug( 'ui-select-content::value()', 'Requested details not found for \'' + id_list[ i ] + '\'.' ); return null; } } @@ -91,7 +113,7 @@ var View = Backbone.View.extend({ } } } else { - Galaxy.emit.debug( 'tools-select-content::value()', 'Invalid value/source \'' + new_value + '\'.' ); + Galaxy.emit.debug( 'ui-select-content::value()', 'Invalid value/source \'' + new_value + '\'.' ); } return null; }, @@ -102,7 +124,9 @@ var View = Backbone.View.extend({ _.each( this.fields, function( field, i ) { if ( self.model.get( 'current' ) == i ) { field.$el.show(); - self.$batch[ self.config[ i ].batchmode && 'show' || 'hide' ](); + _.each( self.$batch, function( $batchfield, batchmode ) { + $batchfield[ self.config[ i ].batch == batchmode ? 'show' : 'hide' ](); + }); self.button_type.value( i ); } else { field.$el.hide(); @@ -114,13 +138,14 @@ var View = Backbone.View.extend({ _changeType: function() { var self = this; - // identify selector type - var config_id = String( this.model.get( 'type' ) ) + ( this.model.get( 'multiple' ) ? '_multiple' : '' ); + // identify selector type identifier i.e. [ flavor ]_[ type ]_[ multiple ] + var config_id = ( this.model.get( 'flavor' ) ? this.model.get( 'flavor' ) + '_' : '' ) + + String( this.model.get( 'type' ) ) + ( this.model.get( 'multiple' ) ? '_multiple' : '' ); if ( Configurations[ config_id ] ) { this.config = Configurations[ config_id ]; } else { this.config = Configurations[ 'data' ]; - Galaxy.emit.debug( 'tools-select-content::_changeType()', 'Invalid configuration/type id \'' + config_id + '\'.' ); + Galaxy.emit.debug( 'ui-select-content::_changeType()', 'Invalid configuration/type id \'' + config_id + '\'.' ); } // prepare extension component of error message @@ -167,7 +192,9 @@ var View = Backbone.View.extend({ _.each( this.fields, function( field ) { self.$el.append( field.$el.css( { 'margin-left': button_width } ) ); }); - this.$el.append( this.$batch.css( { 'margin-left': button_width } ) ); + _.each( this.$batch, function( $batchfield, batchmode ) { + self.$el.append( $batchfield.css( { 'margin-left': button_width } ) ); + }); this.model.set( 'current', 0 ); this._changeCurrent(); this._changeData(); @@ -229,16 +256,23 @@ var View = Backbone.View.extend({ }, /** Assists in identifying the batch mode */ - _batch: function() { + _batch: function( result ) { + result[ 'batch' ] = false; var current = this.model.get( 'current' ); var config = this.config[ current ]; if ( config.src == 'hdca' && !config.multiple ) { var hdca = this.history[ this.fields[ current ].value() + '_hdca' ]; if ( hdca && hdca.map_over_type ) { - return true; + result[ 'batch' ] = true; } } - return config.batchmode; + if ( config.batch == Batch.LINKED || config.batch == Batch.ENABLED ) { + result[ 'batch' ] = true; + if ( config.batch == Batch.ENABLED && this.button_product.value() === 'true' ) { + result[ 'product' ] = true; + } + } + return result; } }); @@ -246,4 +280,4 @@ return { View: View } -}); +}); \ No newline at end of file diff --git a/client/galaxy/scripts/utils/utils.js b/client/galaxy/scripts/utils/utils.js index a17a28d4547..32eae1ccd2b 100644 --- a/client/galaxy/scripts/utils/utils.js +++ b/client/galaxy/scripts/utils/utils.js @@ -88,15 +88,16 @@ function textify( lst ) { */ function get (options) { top.__utils__get__ = top.__utils__get__ || {}; - if (options.cache && top.__utils__get__[options.url]) { - options.success && options.success(top.__utils__get__[options.url]); - console.debug('utils.js::get() - Fetching from cache [' + options.url + '].'); + var cache_key = JSON.stringify( options ); + if (options.cache && top.__utils__get__[cache_key]) { + options.success && options.success(top.__utils__get__[cache_key]); + window.console.debug('utils.js::get() - Fetching from cache [' + options.url + '].'); } else { request({ url : options.url, data : options.data, success : function(response) { - top.__utils__get__[options.url] = response; + top.__utils__get__[cache_key] = response; options.success && options.success(response); }, error : function(response) { @@ -277,4 +278,4 @@ return { isJSON: isJSON }; -}); +}); \ No newline at end of file diff --git a/client/galaxy/style/less/ui.less b/client/galaxy/style/less/ui.less index 38a6132cd24..0042d951165 100644 --- a/client/galaxy/style/less/ui.less +++ b/client/galaxy/style/less/ui.less @@ -264,13 +264,6 @@ width: 100%; height: 100%; background: @white; - } - .ui-form-backdrop-default { - display: block; - opacity: 0.2; - cursor: not-allowed; - } - .ui-form-backdrop-silent { display: block; opacity: 0.0; cursor: default; @@ -283,6 +276,12 @@ box-shadow: none !important; } } +.ui-form-element-disabled { + &:extend(.ui-form-element all); + .ui-form-title { + font-weight: normal; + } +} .ui-form-separator { font-weight: bold; @@ -300,10 +299,11 @@ font-size: 1.2em; padding: 2px 5px; } -} - -.ui-form-footer-info { - line-height: 1.4em; + .ui-form-title { + clear:both; + font-weight: bold; + padding-right: @ui-margin-horizontal; + } } .ui-form-error { @@ -327,6 +327,10 @@ &:extend(.btn-default all); margin-left: @ui-margin-horizontal; } + .ui-message { + margin-top: 0px; + margin-bottom:10px; + } } // portlets diff --git a/static/maps/mvc/form/form-input.js.map 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"))),this.listenTo(this.model,"change",this.render,this),this.render()},value:function(t){return void 0!==t&&this.model.set("value",t),this.model.get("value")},render:function(){return this.$el.attr("id",this.model.id),this.$hidden.val(this.model.get("value")),this.model.get("info")?this.$info.show().html(this.model.get("info")):this.$info.hide(),this}});return{Button:r.ButtonDefault,ButtonIcon:r.ButtonIcon,ButtonCheck:r.ButtonCheck,ButtonMenu:r.ButtonMenu,ButtonLink:r.ButtonLink,Input:h,Label:c,Message:d,Modal:l,RadioButton:n.RadioButton,Checkbox:n.Checkbox,Radio:n.Radio,Select:e,Hidden:u,Slider:i,Drilldown:s}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1))},,function(t,e,i){var n,s;(function(o,a,r){n=[i(4),i(7)],s=function(t,e){var i=o.View.extend({visible:!1,initialize:function(i){var n=this;this.model=i&&i.model||new o.Model({id:t.uid(),cls:"ui-portlet",title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,collapsible:!1,collapsible_button:!1,collapsed:!1}).set(i),this.setElement(this._template()),this.$body=this.$(".portlet-body"),this.$title_text=this.$(".portlet-title-text"),this.$title_icon=this.$(".portlet-title-icon"),this.$header=this.$(".portlet-header"),this.$content=this.$(".portlet-content"),this.$footer=this.$(".portlet-footer"),this.$backdrop=this.$(".portlet-backdrop"),this.$buttons=this.$(".portlet-buttons"),this.$operations=this.$(".portlet-operations"),this.model.get("body")&&this.append(this.model.get("body")),this.collapsible_button=new e.ButtonIcon({icon:"fa-eye",tooltip:"Collapse/Expand",cls:"ui-button-icon-plain",onclick:function(){n[n.collapsed?"expand":"collapse"]()}}),this.render()},render:function(){var t=this,e=this.model.attributes;return this.$el.removeClass().addClass(e.cls).attr("id",e.id),this.$header[e.title?"show":"hide"](),this.$title_text.html(e.title),a.each([this.$content,this.$body],function(t){t[e.nopadding?"addClass":"removeClass"]("no-padding")}),e.icon?this.$title_icon.removeClass().addClass("portlet-title-icon fa").addClass(e.icon).show():this.$title_icon.hide(),this.$title_text[e.collapsible?"addClass":"removeClass"]("no-highlight collapsible").off(),e.collapsible&&(this.$title_text.on("click",function(){t[t.collapsed?"expand":"collapse"]()}),e.collapsed?this.collapse():this.expand()),e.buttons?(this.$buttons.empty().show(),r.each(this.model.get("buttons"),function(e,i){i.$el.prop("id",e),t.$buttons.append(i.$el)})):this.$buttons.hide(),this.$operations.empty,e.collapsible_button&&this.$operations.append(this.collapsible_button.$el),e.operations&&r.each(e.operations,function(e,i){i.$el.prop("id",e),t.$operations.append(i.$el)}),this},append:function(t){this.$body.append(t)},empty:function(){this.$body.empty()},header:function(){return this.$header},body:function(){return this.$body},footer:function(){return this.$footer},show:function(){this.visible=!0,this.$el.fadeIn("fast")},hide:function(){this.visible=!1,this.$el.fadeOut("fast")},enableButton:function(t){this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(t){this.$buttons.find("#"+t).prop("disabled",!0)},hideOperation:function(t){this.$operations.find("#"+t).hide()},showOperation:function(t){this.$operations.find("#"+t).show()},setOperation:function(t,e){this.$operations.find("#"+t).off("click").on("click",e)},title:function(t){return t&&this.$title_text.html(t),this.$title_text.html()},collapse:function(){this.collapsed=!0,this.$content.height("0%"),this.$body.hide(),this.$footer.hide(),this.collapsible_button.setIcon("fa-eye-slash")},expand:function(){this.collapsed=!1,this.$content.height("100%"),this.$body.fadeIn("fast"),this.$footer.fadeIn("fast"),this.collapsible_button.setIcon("fa-eye")},disable:function(){this.$backdrop.show()},enable:function(){this.$backdrop.hide()},_template:function(){return r("
").append(r("
").addClass("portlet-header").append(r("
").addClass("portlet-operations")).append(r("
").addClass("portlet-title").append(r("").addClass("portlet-title-icon")).append(r("").addClass("portlet-title-text")))).append(r("
").addClass("portlet-content").append(r("
").addClass("portlet-body")).append(r("
").addClass("portlet-buttons"))).append(r("
").addClass("portlet-footer")).append(r("
").addClass("portlet-backdrop"))}});return{View:i}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(3),i(1))},function(t,e,i){var n,s;n=[],s=function(){"use strict";var t={UPLOAD:"upload",QUEUED:"queued",RUNNING:"running",SETTING_METADATA:"setting_metadata",NEW:"new",EMPTY:"empty",OK:"ok",PAUSED:"paused",FAILED_METADATA:"failed_metadata",NOT_VIEWABLE:"noPermission",DISCARDED:"discarded",ERROR:"error"};return t.READY_STATES=[t.OK,t.EMPTY,t.PAUSED,t.FAILED_METADATA,t.NOT_VIEWABLE,t.DISCARDED,t.ERROR],t.NOT_READY_STATES=[t.UPLOAD,t.QUEUED,t.RUNNING,t.SETTING_METADATA,t.NEW],t}.apply(e,n),!(void 0!==s&&(t.exports=s))},,function(t,e,i){var n,s;(function(o,a,r){n=[i(8),i(24),i(15)],s=function(t,e,i){var n=o.Model.extend({}),s=o.Model.extend({defaults:{id:"",type:"",name:"",hda_ldda:"hda",metadata:null},initialize:function(){this.get("metadata")||this._set_metadata(),this.on("change",this._set_metadata,this)},_set_metadata:function(){var t=new n;a.each(a.keys(this.attributes),function(e){if(0===e.indexOf("metadata_")){var i=e.split("metadata_")[1];t.set(i,this.attributes[e]),delete this.attributes[e]}},this),this.set("metadata",t,{silent:!0})},get_metadata:function(t){return this.attributes.metadata.get(t)},urlRoot:Galaxy.root+"api/datasets"}),l=s.extend({defaults:a.extend({},s.prototype.defaults,{chunk_url:null,first_data_chunk:null,chunk_index:-1,at_eof:!1}),initialize:function(t){s.prototype.initialize.call(this),this.attributes.chunk_index=this.attributes.first_data_chunk?1:0,this.attributes.chunk_url=Galaxy.root+"dataset/display?dataset_id="+this.id,this.attributes.url_viz=Galaxy.root+"visualization"},get_next_chunk:function(){if(this.attributes.at_eof)return null;var t=this,e=r.Deferred();return r.getJSON(this.attributes.chunk_url,{chunk:t.attributes.chunk_index++}).success(function(i){var n;""!==i.ck_data?n=i:(t.attributes.at_eof=!0,n=null),e.resolve(n)}),e}}),c=o.Collection.extend({model:s}),d=o.View.extend({initialize:function(t){this.row_count=0,this.loading_chunk=!1,new p({model:t.model,$el:this.$el})},expand_to_container:function(){this.$el.height()").attr("id","loading_indicator"),this.$el.append(this.loading_indicator);var t=r("").attr({id:"content_table",cellpadding:0});this.$el.append(t);var e=this.model.get_metadata("column_names"),i=r("").appendTo(t),n=r("").appendTo(i);if(e)n.append("");else for(var s=1;s<=this.model.get_metadata("columns");s++)n.append("");var o=this,a=this.model.get("first_data_chunk");a?this._renderChunk(a):r.when(o.model.get_next_chunk()).then(function(t){o._renderChunk(t)}),this.scroll_elt.scroll(function(){o.attempt_to_fetch()})},scrolled_to_bottom:function(){return!1},_renderCell:function(t,e,i){var n=r("");e.append(t),this.row.append(e)},appendHeader:function(){this.$thead.append(this.row),this.row=a("")},add:function(t,e,i){var n=a("");e&&n.css("width",e),i&&n.css("text-align",i),n.append(t),this.row.append(n)},append:function(t,e){this._commit(t,e,!1)},prepend:function(t,e){this._commit(t,e,!0)},get:function(t){return this.$el.find("#"+t)},del:function(t){var e=this.$tbody.find("#"+t);e.length>0&&(e.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(t){this.before=this.$tbody.find(".current").attr("id"),void 0!==t&&(this.$tbody.find("tr").removeClass("current"),t&&this.$tbody.find("#"+t).addClass("current"));var e=this.$tbody.find(".current").attr("id");return void 0===e?null:(e!=this.before&&this.options.onchange&&this.options.onchange(t),e)},size:function(){return this.$tbody.find("tr").length},_commit:function(t,e,i){this.del(t),this.row.attr("id",t),i?this.$tbody.prepend(this.row):this.$tbody.append(this.row),e&&(this.row.hide(),this.row.fadeIn()),this.row=this._row(),this.row_count++,this._refresh()},_row:function(){return a('')},_onclick:function(t){var e=this.value(),i=a(t.target).closest("tr").attr("id");""!=i&&i&&e!=i&&(this.options.onconfirm?this.options.onconfirm(i):this.value(i))},_ondblclick:function(t){var e=this.value();e&&this.options.ondblclick&&this.options.ondblclick(e)},_refresh:function(){0==this.row_count?this.$tmessage.show():this.$tmessage.hide()},_template:function(t){return'
"+e.join("")+""+s+"").text(t),s=this.model.get_metadata("column_types");return void 0!==i?n.attr("colspan",i).addClass("stringalign"):s&&e"),n=this.model.get_metadata("columns");return this.row_count%2!==0&&i.addClass("dark_row"),e.length===n?a.each(e,function(t,e){i.append(this._renderCell(t,e))},this):e.length>n?(a.each(e.slice(0,n-1),function(t,e){i.append(this._renderCell(t,e))},this),i.append(this._renderCell(e.slice(n-1).join(" "),n-1))):n>5&&e.length===n-1?(a.each(e,function(t,e){i.append(this._renderCell(t,e))},this),i.append(r(""))):i.append(this._renderCell(t,0,n)),this.row_count++,i},_renderChunk:function(t){var e=this.$el.find("table");a.each(t.ck_data.split("\n"),function(t,i){""!==t&&e.append(this._renderRow(t))},this)}}),h=d.extend({initialize:function(t){d.prototype.initialize.call(this,t),scroll_elt=a.find(this.$el.parents(),function(t){return"auto"===r(t).css("overflow")}),scroll_elt||(scroll_elt=window),this.scroll_elt=r(scroll_elt)},scrolled_to_bottom:function(){return this.$el.height()-this.scroll_elt.scrollTop()-this.scroll_elt.height()<=0}}),u=d.extend({initialize:function(t){d.prototype.initialize.call(this,t),this.scroll_elt=this.$el.css({position:"relative",overflow:"scroll",height:t.height||"500px"})},scrolled_to_bottom:function(){return this.$el.scrollTop()+this.$el.innerHeight()>=this.el.scrollHeight}}),p=o.View.extend({col:{chrom:null,start:null,end:null},url_viz:null,dataset_id:null,genome_build:null,file_ext:null,initialize:function(t){function e(t,e){for(var i=0;i';return t.icon&&(e+=' '),e+=''+t.title+""}}),i=e.extend({initialize:function(t){e.prototype.initialize.call(this,t)},_template:function(t){return''}}),n=o.View.extend({initialize:function(e){this.options=t.merge(e,{title:"Select/Unselect all",icons:["fa fa-square-o","fa fa-minus-square-o","fa fa-check-square-o"],value:0}),this.setElement(this._template()),this.$title=this.$(".title"),this.$icon=this.$(".icon"),this.value(this.options.value),this.$title.html(this.options.title);var i=this;this.$el.on("click",function(){i.current=0===i.current&&2||0,i.value(i.current),i.options.onclick&&i.options.onclick()})},value:function(t,e){return void 0!==t&&(e&&0!==t&&(t=t!==e&&1||2),this.current=t,this.$icon.removeClass().addClass("icon").addClass(this.options.icons[t]),this.options.onchange&&this.options.onchange(t)),this.current},_template:function(){return'
'}}),s=o.View.extend({initialize:function(e){this.options=t.merge(e,{id:t.uid(),title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null}),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var i=this;a(this.el).on("click",function(){a(".tooltip").hide(),e.onclick&&!i.disabled&&e.onclick()}),this.$button.tooltip({title:e.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},setIcon:function(t){this.$("i").removeClass(this.options.icon).addClass(t),this.options.icon=t},_template:function(t){var e="";t.title&&(e="width: auto;");var i='
';return i+=t.title?' '+t.title+"":'',i+="
"}}),r=o.View.extend({$menu:null,initialize:function(e){this.options=t.merge(e,{id:"",title:"",floating:"right",pull:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""}),this.setElement(a(this._template(this.options)));var i=a(this.el).find(".root"),n=this;i.on("click",function(t){a(".tooltip").hide(),t.preventDefault(),n.options.onclick&&n.options.onclick()}),this.options.visible||this.hide(),i.tooltip({title:e.tooltip,placement:"bottom"})},show:function(){a(this.el).show()},hide:function(){a(this.el).hide()},addMenu:function(e){var i={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};i=t.merge(e,i),this.$menu||(a(this.el).append(this._templateMenu()),this.$menu=a(this.el).find(".menu"));var n=a(this._templateMenuItem(i));n.on("click",function(t){i.onclick&&(t.preventDefault(),i.onclick())}),this.$menu.append(n),i.divider&&this.$menu.append(a(this._templateDivider()))},_templateMenuItem:function(t){var e='
  • '),e+=" "+t.title+"
    • "},_templateMenu:function(){return'
    '+t.content+"
    "}});return{View:e}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1))},function(t,e,i){var n,s;(function(i,o,a){n=[],s=function(){var t=i.Model.extend({defaults:{title:"",icon_class:"",on_click:null,menu_options:null,is_menu_button:!0,id:null,href:null,target:null,enabled:!0,visible:!0,tooltip_config:{}}}),e=i.View.extend({initialize:function(){this.model.attributes.tooltip_config={placement:"bottom"},this.model.bind("change",this.render,this)},render:function(){this.$el.tooltip("hide");var t=this.template(this.model.toJSON());return t.tooltip(this.model.get("tooltip_config")),this.$el.replaceWith(t),this.setElement(t),this},events:{click:"click"},click:function(t){return o.isFunction(this.model.get("on_click"))?(this.model.get("on_click")(t),!1):!0},template:function(t){var e='title="'+t.title+'" class="icon-button';return t.is_menu_button&&(e+=" menu-button"),e+=" "+t.icon_class,t.enabled||(e+="_disabled"),e+='"',t.id&&(e+=' id="'+t.id+'"'),e+=' href="'+t.href+'"',t.target&&(e+=' target="'+t.target+'"'),t.visible||(e+=' style="display: none;"'),e=t.enabled?"":"",a(e)}}),n=i.Collection.extend({model:t}),s=i.View.extend({tagName:"div",initialize:function(){this.render()},render:function(){var t=this;return this.collection.each(function(e){var i=a("").attr("href","javascript:void(0)").attr("title",e.attributes.title).addClass("icon-button menu-button").addClass(e.attributes.icon_class).appendTo(t.$el).click(e.attributes.on_click);e.attributes.tooltip_config&&i.tooltip(e.attributes.tooltip_config);var n=e.get("options");n&&make_popupmenu(i,n)}),this}}),r=function(e,i){i||(i={});var a=new n(o.map(e,function(e){return new t(o.extend(e,i))}));return new s({collection:a})};return{IconButton:t,IconButtonView:e,IconButtonCollection:n,IconButtonMenuView:s,create_icon_buttons_menu:r}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(3),i(1))},function(t,e,i){var n,s,o;!function(a){s=[i(1)],n=a,o="function"==typeof n?n.apply(e,s):n,!(void 0!==o&&(t.exports=o))}(function(t){"use_strict";var e=t;e.fn.make_text_editable=function(t){var i="num_cols"in t?t.num_cols:30,n="num_rows"in t?t.num_rows:4,s="use_textarea"in t?t.use_textarea:!1,o="on_finish"in t?t.on_finish:null,a="help_text"in t?t.help_text:null,r=e(this);return r.addClass("editable-text").click(function(a){if(!(e(this).children(":input").length>0)){r.removeClass("editable-text");var l,c,d=function(t){r.find(":input").remove(),""!==t?r.text(t):r.html("
    "),r.addClass("editable-text"),o&&o(t)},h="cur_text"in t?t.cur_text:r.text();s?(l=e("',"
    ","
    "].join("")}});return{CitationView:n,CitationListView:s}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2))},function(t,e,i){var n,s;(function(o,a,r){n=[i(42),i(32),i(6),i(5)],s=function(t,e,i,n){"use strict";var s=t.FoldoutListItemView,l=t.ListItemView,c=s.extend({className:s.prototype.className+" dataset-collection",id:function(){return["dataset_collection",this.model.get("id")].join("-")},initialize:function(t){this.linkTarget=t.linkTarget||"_blank",this.hasUser=t.hasUser,s.prototype.initialize.call(this,t)},_setUpListeners:function(){s.prototype._setUpListeners.call(this),this.listenTo(this.model,"change",function(t,e){o.has(t.changed,"deleted")?this.render():o.has(t.changed,"element_count")&&this.$("> .title-bar .subtitle").replaceWith(this._renderSubtitle())})},_renderSubtitle:function(){return a(this.templates.subtitle(this.model.toJSON(),this))},_getFoldoutPanelOptions:function(){var t=s.prototype._getFoldoutPanelOptions.call(this);return o.extend(t,{linkTarget:this.linkTarget,hasUser:this.hasUser})},$selector:function(){return this.$("> .selector")},toString:function(){var t=this.model?this.model+"":"(no model)";return"DCListItemView("+t+")"}});c.prototype.templates=function(){var t=o.extend({},s.prototype.templates.warnings,{error:i.wrapTemplate(["<% if( model.error ){ %>",'
    ',n("There was an error getting the data for this collection"),": <%- model.error %>","
    ","<% } %>"]),purged:i.wrapTemplate(["<% if( model.purged ){ %>",'
    ',n("This collection has been deleted and removed from disk"),"
    ","<% } %>"]),deleted:i.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'
    ',n("This collection has been deleted"),"
    ","<% } %>"])}),e=i.wrapTemplate(['
    ','
    ','<%- collection.element_identifier || collection.name %>',"
    ",'
    ',"
    "],"collection"),a=i.wrapTemplate(['
    ','<% var countText = collection.element_count? ( collection.element_count + " " ) : ""; %>','<% if( collection.collection_type === "list" ){ %>',n("a list of <%- countText %>datasets"),'<% } else if( collection.collection_type === "paired" ){ %>',n("a pair of datasets"),'<% } else if( collection.collection_type === "list:paired" ){ %>',n("a list of <%- countText %>dataset pairs"),"<% } %>","
    "],"collection");return o.extend({},s.prototype.templates,{warnings:t,titleBar:e,subtitle:a})}();var d=l.extend({className:l.prototype.className+" dataset-collection-element",initialize:function(t){t.logger&&(this.logger=this.model.logger=t.logger),this.log("DCEListItemView.initialize:",t),l.prototype.initialize.call(this,t)},toString:function(){var t=this.model?this.model+"":"(no model)";return"DCEListItemView("+t+")"}});d.prototype.templates=function(){var t=i.wrapTemplate(['
    ','
    ','<%- element.element_identifier %>',"
    ",'
    ',"
    "],"element");return o.extend({},l.prototype.templates,{titleBar:t})}();var h=e.DatasetListItemView.extend({className:e.DatasetListItemView.prototype.className+" dataset-collection-element",initialize:function(t){t.logger&&(this.logger=this.model.logger=t.logger),this.log("DatasetDCEListItemView.initialize:",t),e.DatasetListItemView.prototype.initialize.call(this,t)},_fetchModelDetails:function(){var t=this;return t.model.inReadyState()&&!t.model.hasDetails()?t.model.fetch({silent:!0}):r.when()},toString:function(){var t=this.model?this.model+"":"(no model)";return"DatasetDCEListItemView("+t+")"}});h.prototype.templates=function(){var t=i.wrapTemplate(['
    ','','
    ','<%- element.element_identifier %>',"
    ","
    "],"element");return o.extend({},e.DatasetListItemView.prototype.templates,{titleBar:t})}();var u=c.extend({className:c.prototype.className+" dataset-collection-element",_swapNewRender:function(t){c.prototype._swapNewRender.call(this,t);var e=this.model.get("state")||"ok";return this.$el.addClass("state-"+e),this.$el},toString:function(){var t=this.model?this.model+"":"(no model)";return"NestedDCDCEListItemView("+t+")"}});return{DCListItemView:c,DCEListItemView:d,DatasetDCEListItemView:h,NestedDCDCEListItemView:u}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(3),i(1),i(1))},function(t,e,i){var n,s;(function(o,a,r){n=[i(71),i(6),i(5)],s=function(t,e,i){"use strict";var n="collections",s={defaults:{model_class:"DatasetCollectionElement",element_identifier:null,element_index:null,element_type:null},_mergeObject:function(t){return o.extend(t,t.object,{element_id:t.id}),delete t.object,t},constructor:function(t,e){t=this._mergeObject(t),this.idAttribute="element_id",a.Model.apply(this,arguments)},parse:function(t,e){var i=t;return i=this._mergeObject(i)}},l=a.Model.extend(e.LoggableMixin).extend(s).extend({_logNamespace:n}),c=a.Collection.extend(e.LoggableMixin).extend({_logNamespace:n,model:l,initialize:function(t,e){this.debug(this+"(DCECollection).initialize:",t,e),e=e||{}},toString:function(){return["DatasetCollectionElementCollection(",this.length,")"].join("")}}),d=t.DatasetAssociation.extend(e.mixin(s,{url:function(){return this.has("history_id")?Galaxy.root+"api/histories/"+this.get("history_id")+"/contents/"+this.get("id"):(console.warn("no endpoint for non-hdas within a collection yet"),Galaxy.root+"api/datasets")},defaults:o.extend({},t.DatasetAssociation.prototype.defaults,s.defaults),constructor:function(t,e){this.debug(" DatasetDCE.constructor:",t,e),s.constructor.call(this,t,e)},initialize:function(e,i){this.debug(this+"(DatasetDCE).initialize:",e,i),t.DatasetAssociation.prototype.initialize.call(this,e,i)},hasDetails:function(){return o.has(this.attributes,"annotation")},toString:function(){var t=this.get("element_identifier");return["DatasetDCE(",t,")"].join("")}})),h=c.extend({model:d,initialize:function(t,e){this.debug(this+"(DatasetDCECollection).initialize:",t,e),c.prototype.initialize.call(this,t,e)},toString:function(){return["DatasetDCECollection(",this.length,")"].join("")}}),u=a.Model.extend(e.LoggableMixin).extend(e.SearchableModelMixin).extend({_logNamespace:n,defaults:{collection_type:null,deleted:!1},collectionClass:c,initialize:function(t,e){this.debug(this+"(DatasetCollection).initialize:",t,e,this),this.elements=this._createElementsModel(),this.on("change:elements",function(){this.log("change:elements"),this.elements=this._createElementsModel()})},_createElementsModel:function(){this.debug(this+"._createElementsModel",this.collectionClass,this.get("elements"),this.elements);var t=this.get("elements")||[];return this.unset("elements",{silent:!0}),this.elements=new this.collectionClass(t),this.elements},toJSON:function(){var 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    ","<% } %>"])},c=n.wrapTemplate(["<% _.each( apps, function( app ){ %>",'
    ','<%- app.label %> ','',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>","","
    ","<% }); %>"],"apps");return l.extend({},d.prototype.templates,{warnings:t,details:i,noAccess:o,summaries:a,detailMessages:r,displayApplications:c})}(),{DatasetListItemView:h}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(1),i(2),i(1),i(3))},function(t,e,i){var n,s;(function(o,a,r){n=[i(4)],s=function(t){var e=o.Model.extend({initialize:function(t){this.app=t},checksum:function(){var t="",e=this;return this.app.section.$el.find(".section-row").each(function(){var i=a(this).attr("id"),n=e.app.field_list[i];n&&(t+=i+":"+JSON.stringify(n.value&&n.value())+":"+n.collapsed+";")}),t},create:function(){function t(t,e,i){n.flat_dict[t]=e,o[t]=i,n.app.element_list[e]&&n.app.element_list[e].$el.attr("tour_id",t)}function e(s,o){for(var a in o){var r=o[a];if(r.input){var l=r.input,c=s;switch(""!=s&&(c+="|"),c+=l.name,l.type){case"repeat":var d="section-",h=[],u=null;for(var p in r){var g=p.indexOf(d);-1!=g&&(g+=d.length,h.push(parseInt(p.substr(g))),u||(u=p.substr(0,g)))}h.sort(function(t,e){return t-e});var a=0;for(var f in h)e(c+"_"+a++,r[u+h[f]]);break;case"conditional":var m=n.app.field_list[l.id].value();t(c+"|"+l.test_param.name,l.id,m);var v=i(l,m);-1!=v&&e(c,o[l.id+"-section-"+v]);break;case"section":e(!l.flat&&c||"",r);break;default:var _=n.app.field_list[l.id];if(_&&_.value){var m=_.value();if((void 0===l.ignore||l.ignore!=m)&&(_.collapsed&&l.collapsible_value&&(m=l.collapsible_value),t(c,l.id,m),l.payload))for(var y in l.payload)t(y,l.id,l.payload[y])}}}}}var n=this,s={};this._iterate(this.app.section.$el,s);var o={};return this.flat_dict={},e("",s),o},match:function(t){return this.flat_dict&&this.flat_dict[t]},matchCase:function(t,e){return i(t,e)},matchModel:function(t,e){var i=this;n(t.inputs,function(t,n){i.flat_dict[n]&&e(t,i.flat_dict[n])})},matchResponse:function(t){function e(t,s){if("string"==typeof s){var o=n.flat_dict[t];o&&(i[o]=s)}else for(var a in s){var r=a;if(""!==t){var l="|";s instanceof Array&&(l="_"),r=t+l+r}e(r,s[a])}}var i={},n=this;return e("",t),i},_iterate:function(t,e){var i=this,n=a(t).children();n.each(function(){var t=this,n=a(t).attr("id");if(a(t).hasClass("section-row")){var s=i.app.input_list[n];e[n]=s&&{input:s}||{},i._iterate(t,e[n])}else i._iterate(t,e)})}}),i=function(t,e){"boolean"==t.test_param.type&&(e="true"==e?t.test_param.truevalue||"true":t.test_param.falsevalue||"false");for(var i in t.cases)if(t.cases[i].value==e)return i;return-1},n=function(t,e,s,o){o=a.extend(!0,{},o),r.each(t,function(t){t&&t.type&&t.name&&(o[t.name]=t)});for(var l in t){var c=t[l],d=s?s+"|"+c.name:c.name;switch(c.type){case"repeat":r.each(c.cache,function(t,i){n(t,e,d+"_"+i,o)});break;case"conditional":if(c.test_param){e(c.test_param,d+"|"+c.test_param.name,o);var h=i(c,c.test_param.value);-1!=h?n(c.cases[h].inputs,e,d,o):Galaxy.emit.debug("form-data::visitInputs() - Invalid case for "+d+".")}else Galaxy.emit.debug("form-data::visitInputs() - Conditional test parameter missing for "+d+".");break;case"section":n(c.inputs,e,d,o);break;default:e(c,d,o)}}};return{Manager:e,visitInputs:n}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3))},function(t,e,i){var n,s;(function(i,o,a){n=[],s=function(){return i.View.extend({initialize:function(t,e){this.app=t,this.app_options=t.options||{},this.field=e&&e.field||new i.View,this.model=e&&e.model||new i.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up"}).set(e),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var n=this.model.get("collapsible_value");this.field.collapsed=void 0!==n&&JSON.stringify(this.model.get("value"))==JSON.stringify(n),this.listenTo(this.model,"change",this.render,this),this.render();var s=this;this.$collapsible.on("click",function(){s.field.collapsed=!s.field.collapsed,t.trigger&&t.trigger("change"),s.render()})},disable:function(t){this.model.set("backdrop",t?"silent":"default")},error:function(t){this.model.set("error_text",t)},reset:function(){this.model.set("error_text",null)},render:function(){o(".tooltip").hide();var t=this.model.get("help",""),e=this.model.get("argument");e&&-1==t.indexOf("("+e+")")&&(t+=" ("+e+")"),this.$info.html(t),this.field.collapsed?this.$field.hide():this.$field.fadeIn("fast"),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")?"show":"hide"]().html(a.escape(this.model.get("text_value")));var i=this.model.get("error_text");if(this.$error[i?"show":"hide"](),this.$el[i?"addClass":"removeClass"]("ui-error"),this.$error_text.html(i),this.$backdrop.removeClass().addClass("ui-form-backdrop").addClass("ui-form-backdrop-"+this.model.get("backdrop")),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var n=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+n)).attr("data-original-title",this.model.get("text_"+n)).tooltip({placement:"bottom"})}},_template:function(){return o("
    ").addClass("ui-form-element").append(o("
    ").addClass("ui-form-error ui-error").append(o("").addClass("fa fa-arrow-down")).append(o("").addClass("ui-form-error-text"))).append(o("
    ").addClass("ui-form-title").append(o("
    ").addClass("ui-form-collapsible").append(o("").addClass("ui-form-collapsible-icon")).append(o("").addClass("ui-form-collapsible-text"))).append(o("").addClass("ui-form-title-text"))).append(o("
    ").addClass("ui-form-field").append(o("").addClass("ui-form-info")).append(o("").addClass("ui-form-backdrop"))).append(o("
    ").addClass("ui-form-preview"))}})}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3))},function(t,e,i){var n,s;(function(o,a,r){n=[i(4),i(7),i(50),i(52),i(51),i(48)],s=function(t,e,i,n,s,l){return o.Model.extend({types:{text:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider","float":"_fieldSlider","boolean":"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp"},initialize:function(t,e){this.app=t},create:function(t){var e=this.types[t.type],i="function"==typeof this[e]?this[e].call(this,t):null;return i||(this.app.incompatible=!0,i=t.options?this._fieldSelect(t):this._fieldText(t),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+t.type+").")),void 0===t.value&&(t.value=null),i.value(t.value),i},_fieldData:function(t){var e=this;return new i.View({id:"field-"+t.id,extensions:t.extensions,optional:t.optional,multiple:t.multiple,type:t.type,data:t.options,onchange:function(){e.app.trigger("change")}})},_fieldSelect:function(t){if(t.is_workflow)return this._fieldText(t);"data_column"==t.type&&(t.error_text="Missing columns in referenced dataset.");var i=[];a.each(t.options,function(t){i.push({label:t[0],value:t[1]})});var n=e.Select;switch(t.display){case"checkboxes":n=e.Checkbox;break;case"radio":n=e.Radio}var s=this;return new n.View({id:"field-"+t.id,data:i,error_text:t.error_text||"No options available",multiple:t.multiple,optional:t.optional,onchange:function(){s.app.trigger("change")}})},_fieldDrilldown:function(t){if(t.is_workflow)return this._fieldText(t);var i=this;return new e.Drilldown.View({id:"field-"+t.id,data:t.options,display:t.display,optional:t.optional,onchange:function(){i.app.trigger("change")}})},_fieldText:function(i){if(i.options)if(i.area=i.multiple,t.isEmpty(i.value))i.value=null;else if(r.isArray(i.value)){var n="";for(var s in i.value){if(n+=String(i.value[s]),!i.multiple)break;n+="\n"}i.value=n}var o=this;return new e.Input({id:"field-"+i.id,area:i.area,onchange:function(t){i.onchange?i.onchange(t):o.app.trigger("change")}})},_fieldSlider:function(t){var i=this;return new e.Slider.View({id:"field-"+t.id,precise:"float"==t.type,is_workflow:t.is_workflow,min:t.min,max:t.max,onchange:function(){i.app.trigger("change")}})},_fieldHidden:function(t){return new e.Hidden({id:"field-"+t.id,info:t.info})},_fieldBoolean:function(t){var i=this;return new e.RadioButton.View({id:"field-"+t.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:function(){i.app.trigger("change")}})},_fieldColor:function(t){var e=this;return new l({id:"field-"+t.id,onchange:function(){e.app.trigger("change")}})},_fieldLibrary:function(t){var e=this;return new n.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:function(){e.app.trigger("change")}})},_fieldFtp:function(t){var e=this;return new s.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:function(){e.app.trigger("change")}})}})}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(3),i(1))},function(t,e,i){var n,s;(function(o,a,r){n=[i(4),i(14),i(9),i(7)],s=function(t,e,i,n){var s=o.View.extend({initialize:function(i){this.options=t.merge(i,{title:"Section",empty_text:"Not available.",max:null,min:null}),this.setElement("
    "),this.button_new=new n.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title_new,tooltip:"Add new "+this.options.title_new+" block",floating:"clear",onclick:function(){i.onnew&&i.onnew()}}),this.table=new e.View({cls:"ui-table-plain",content:""}),this.$el.append(this.table.$el),this.$el.append(a("
    ").append(this.button_new.$el)),this.list={},this.n=0},size:function(){return this.n},add:function(t){if(!t.id||this.list[t.id])return void Galaxy.emit.debug("form-repeat::add()","Duplicate repeat block id.");this.n++;var e=new n.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain",onclick:function(){t.ondel&&t.ondel()}}),s=new i.View({id:t.id,title:"placeholder",cls:"ui-portlet-repeat",operations:{button_delete:e}});s.append(t.$el),s.$el.addClass("section-row"),this.list[t.id]=s,this.table.add(s.$el),this.table.append("row_"+t.id,!0),this.options.max>0&&this.n>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(t){if(!this.list[t])return void Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.");this.n--;var e=this.table.get("row_"+t);e.remove(),delete this.list[t],this.button_new.enable(),this._refresh()},hideOptions:function(){this.button_new.$el.hide(),r.each(this.list,function(t){t.hideOperation("button_delete")}),r.isEmpty(this.list)&&this.$el.append(a("
    ").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),this.n>this.options.min?i.showOperation("button_delete"):i.hideOperation("button_delete")}}});return{View:s}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3))},function(t,e,i){var n,s;(function(o,a,r,l){n=[i(4),i(14),i(7),i(9),i(36),i(34),i(35)],s=function(t,e,i,n,s,c,d){var h=o.View.extend({initialize:function(t,i){this.app=t,this.inputs=i.inputs,i.cls="ui-table-plain",i.cls_tr="section-row",this.table=new e.View(i),this.parameters=new d(t,i),this.setElement(this.table.$el),this.render()},render:function(){this.table.delAll();for(var t in this.inputs)this.add(this.inputs[t])},add:function(e){var i=a.extend(!0,{},e);i.id=e.id=t.uid(),this.app.input_list[i.id]=i;var n=i.type;switch(n){case"conditional":this._addConditional(i);break;case"repeat":this._addRepeat(i);break;case"section":this._addSection(i);break;default:this._addRow(i)}},_addConditional:function(t){var e=this;t.test_param.id=t.id,this.app.options.sustain_conditionals&&(t.test_param.disabled=!0);var i=this._addRow(t.test_param);i.model&&i.model.set("onchange",function(i){var n=e.app.data.matchCase(t,i);for(var s in t.cases){var o=t.cases[s],a=t.id+"-section-"+s,r=e.table.get(a),l=!1;for(var c in o.inputs)if(!o.inputs[c].hidden){l=!0;break}s==n&&l?r.fadeIn("fast"):r.hide()}e.app.trigger("change")});for(var n in t.cases){var s=t.id+"-section-"+n,o=new h(this.app,{inputs:t.cases[n].inputs});o.$el.addClass("ui-table-section"),this.table.add(o.$el),this.table.append(s)}i.trigger("change")},_addRepeat:function(t){function e(e){var s=t.id+"-section-"+n++,a=new h(i.app,{inputs:e});o.add({id:s,$el:a.$el,ondel:function(){o.del(s),i.app.trigger("change")}})}for(var i=this,n=0,o=new s.View({title:t.title||"Repeat",title_new:t.title||"",min:t.min,max:t.max,onnew:function(){e(t.inputs),i.app.trigger("change")}}),a=r.size(t.cache),l=0;ll?t.cache[l]:t.inputs);this.app.options.sustain_repeats&&o.hideOptions();var d=new c(this.app,{label:t.title||t.name,help:t.help,field:o});this.table.add(d.$el),this.table.append(t.id)},_addSection:function(t){var e=new n.View({title:t.title||t.name,cls:"ui-portlet-section",collapsible:!0,collapsible_button:!0,collapsed:!t.expanded});e.append(new h(this.app,{inputs:t.inputs}).$el),e.append(l("
    ").addClass("ui-form-info").html(t.help)),this.app.on("expand",function(t){e.$("#"+t).length>0&&e.expand()}),this.table.add(e.$el),this.table.append(t.id)},_addRow:function(t){var e=t.id,i=this.parameters.create(t);this.app.field_list[e]=i;var n=new c(this.app,{name:t.name,label:t.label||t.name,value:t.value,text_value:t.text_value,collapsible_value:t.collapsible_value,collapsible_preview:t.collapsible_preview,help:t.help,argument:t.argument,disabled:t.disabled,color:t.color,style:t.style,backdrop:t.backdrop,field:i});return this.app.element_list[e]=n,this.table.add(n.$el),this.table.append(e),t.hidden&&this.table.get(e).hide(),i}});return{View:h}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3),i(1))},function(t,e,i){var n,s;(function(o,a,r){n=[i(4),i(9),i(7),i(37),i(33)],s=function(t,e,i,n,s){return o.View.extend({initialize:function(e){this.options=t.merge(e,{initial_errors:!1,cls:"ui-portlet-limited",icon:null}),this.modal=parent.Galaxy&&parent.Galaxy.modal||new i.Modal.View,this.setElement("
    "),this.render()},update:function(t){var e=this;this.data.matchModel(t,function(t,i){var n=e.input_list[i];if(n&&n.options&&!a.isEqual(n.options,t.options)){n.options=t.options;var s=e.field_list[i];if(s.update){var o=[];if(-1!=["data","data_collection","drill_down"].indexOf(n.type))o=n.options;else for(var r in t.options){var l=t.options[r];l.length>2&&o.push({label:l[0],value:l[1]})}s.update(o),s.trigger("change"),Galaxy.emit.debug("form-view::update()","Updating options for "+i)}}})},wait:function(t){for(var e in this.input_list){var i=this.field_list[e],n=this.input_list[e];n.is_dynamic&&i.wait&&i.unwait&&(t?i.wait():i.unwait())}},highlight:function(t,e,i){var n=this.element_list[t];if(n&&(n.error(e||"Please verify this parameter."),this.trigger("expand",t),!i))if(self==top){var s=this.$el.parents().filter(function(){return"auto"==r(this).css("overflow")}).first();s.animate({scrollTop:s.scrollTop()+n.$el.offset().top-50},500)}else r("html, body").animate({scrollTop:n.$el.offset().top-20},500)},errors:function(t){if(this.trigger("reset"),t&&t.errors){var e=this.data.matchResponse(t.errors);for(var i in this.element_list){this.element_list[i];e[i]&&this.highlight(i,e[i],!0)}}},render:function(){var t=this;this.off("change"),this.off("reset"),this.field_list={},this.input_list={},this.element_list={},this.data=new s.Manager(this),this._renderForm(),this.data.create(),this.options.initial_errors&&this.errors(this.options);var e=this.data.checksum();return this.on("change",function(){var i=t.data.checksum();i!=e&&(e=i,t.options.onchange&&t.options.onchange())}),this.on("reset",function(){for(var t in this.element_list)this.element_list[t].reset()}),this},_renderForm:function(){this.message=new i.Message,this.section=new n.View(this,{inputs:this.options.inputs}),r(".tooltip").remove(),this.portlet=new e.View({icon:this.options.icon,title:this.options.title,cls:this.options.cls,operations:this.options.operations,buttons:this.options.buttons,collapsible:this.options.collapsible,collapsed:this.options.collapsed}),this.portlet.append(this.message.$el),this.portlet.append(this.section.$el),this.$el.empty(),this.$el.append(this.portlet.$el),this.options.message&&this.message.update({persistent:!0,status:"warning",message:this.options.message}),Galaxy.emit.debug("form-view::initialize()","Completed")}})}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(3),i(1))},function(t,e,i){var n,s;(function(o){n=[i(30),i(40),i(5)],s=function(t,e,i){"use strict";function n(t){return function(e,i){return this.isNew()&&(i=i||{},i.url=this.urlRoot+this.get("history_id")+"/contents",e=e||{},e.type="dataset_collection"),t.call(this,e,i)}}var s=e.HistoryContentMixin,a=t.ListDatasetCollection,r=t.PairDatasetCollection,l=t.ListPairedDatasetCollection,c=a.extend(s).extend({defaults:o.extend(o.clone(a.prototype.defaults),{history_content_type:"dataset_collection",collection_type:"list",model_class:"HistoryDatasetCollectionAssociation"}),initialize:function(t,e){a.prototype.initialize.call(this,t,e),s.initialize.call(this,t,e)},save:n(a.prototype.save),toString:function(){return["HistoryListDatasetCollection(",this.get("name"),")"].join("")}}),d=r.extend(s).extend({defaults:o.extend(o.clone(r.prototype.defaults),{history_content_type:"dataset_collection",collection_type:"paired",model_class:"HistoryDatasetCollectionAssociation"}),initialize:function(t,e){r.prototype.initialize.call(this,t,e),s.initialize.call(this,t,e)},save:n(r.prototype.save),toString:function(){return["HistoryPairDatasetCollection(",this.get("name"),")"].join("")}}),h=l.extend(s).extend({defaults:o.extend(o.clone(l.prototype.defaults),{history_content_type:"dataset_collection",collection_type:"list:paired",model_class:"HistoryDatasetCollectionAssociation"}),initialize:function(t,e){l.prototype.initialize.call(this,t,e),s.initialize.call(this,t,e)},save:n(l.prototype.save),toString:function(){return["HistoryListPairedDatasetCollection(",this.get("name"),")"].join("")}});return{HistoryListDatasetCollection:c,HistoryPairDatasetCollection:d,HistoryListPairedDatasetCollection:h}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(3))},function(t,e,i){var n,s;(function(o,a){n=[i(10),i(6),i(5)],s=function(t,e,i){"use strict";var n="history",s=function(t,e){return[t,e].join("-")},r={defaults:{history_id:null,history_content_type:null,hid:null,visible:!0},idAttribute:"type_id",constructor:function(t,e){t.type_id=s(t.history_content_type,t.id),this.debug("HistoryContentMixin.constructor:",t.type_id),o.Model.apply(this,arguments)},_typeIdStr:function(){return s(this.get("history_content_type"),this.get("id"))},initialize:function(t,e){this.on("change:id",this._createTypeId)},_createTypeId:function(){this.set("type_id",this._typeIdStr())},isNew:function(){return!this.get("id")},hidden:function(){return!this.get("visible")},isVisible:function(t,e){var i=!0;return t||!this.get("deleted")&&!this.get("purged")||(i=!1),e||this.get("visible")||(i=!1),i},urlRoot:Galaxy.root+"api/histories/",url:function(){var t=this.urlRoot+this.get("history_id")+"/contents/"+this.get("history_content_type")+"s/"+this.get("id");return t},hide:function(t){return this.get("visible")?this.save({visible:!1},t):a.when()},unhide:function(t){return this.get("visible")?a.when():this.save({visible:!0},t)},toString:function(){var t=this.get("id")||"";return this.get("name")&&(t=this.get("hid")+' :"'+this.get("name")+'",'+t),"HistoryContent("+t+")"}},l=o.Model.extend(e.LoggableMixin).extend(r).extend({_logNamespace:n});return{typeIdStr:s,HistoryContentMixin:r,HistoryContent:l}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1))},function(t,e,i){var n,s;(function(o,a,r){n=[i(40),i(73),i(39),i(10),i(6),i(5)],s=function(t,e,i,n,s,l){"use strict";var c="history",d=o.Collection.extend(s.LoggableMixin).extend({_logNamespace:c,model:function(t,n){if("dataset"===t.history_content_type)return new e.HistoryDatasetAssociation(t,n);if("dataset_collection"===t.history_content_type){switch(t.collection_type){case"list":return new i.HistoryListDatasetCollection(t,n);case"paired":return new i.HistoryPairDatasetCollection(t,n);case"list:paired":return new i.HistoryListPairedDatasetCollection(t,n)}return{validationError:"Unknown collection_type: "+t.history_content_type}}return{validationError:"Unknown history_content_type: "+t.history_content_type}},initialize:function(t,e){e=e||{},this.historyId=e.historyId,this.model.prototype.idAttribute="type_id",this.on("all",function(){this.debug(this+".event:",arguments)})},urlRoot:Galaxy.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},ids:function(){return this.map(function(t){return t.get("id")})},notReady:function(){return this.filter(function(t){return!t.inReadyState()})},running:function(){function t(t){return!t.inReadyState()}return new d(this.filter(t))},getByHid:function(t){return a.first(this.filter(function(e){return e.get("hid")===t}))},getVisible:function(t,e,i){i=i||[],this.debug("checking isVisible");var n=new d(this.filter(function(i){return i.isVisible(t,e)}));return a.each(i,function(t){a.isFunction(t)&&(n=new d(n.filter(t)))}),n},hidden:function(){function t(t){return t.hidden()}return new d(this.filter(t))},deleted:function(){function t(t){return t.get("deleted")}return new d(this.filter(t))},visibleAndUndeleted:function(){function t(t){return t.get("visible")&&!t.get("deleted")}return new d(this.filter(t))},haveDetails:function(){return this.all(function(t){return t.hasDetails()})},fetch:function(t){return t=t||{},t.data=a.defaults(t.data||{},{v:"dev"}),o.Collection.prototype.fetch.call(this,t)},fetchUpdated:function(t,e){return e=e||{},e.traditional=!0,e.data=[{name:"v",value:"dev"}],t&&(e.data=e.data.concat(this._filtersFromMap({"update_time-ge":t.toISOString()}))),e.merge=!0,e.remove=!1,this.fetch(e)},_filtersFromMap:function(t){var e=[];return a.each(t,function(t,i){e.push({name:"q",value:i}),e.push({name:"qv",value:t})}),e},fetchAllDetails:function(t){t=t||{};var e={details:"all"};return t.data=t.data?a.extend(t.data,e):e,this.fetch(t)},fetchCollectionCounts:function(t){return t=t||{},t.data=a.defaults({keys:["type_id","element_count"].join(","),q:"history_content_type",qv:"dataset_collection"},t.data||{}),t.merge=!0,t.remove=!1,this.fetch(t)},ajaxQueue:function(t,e){var i=r.Deferred(),n=this.length,s=[];if(!n)return i.resolve([]),i;var o=this.chain().reverse().map(function(a,r){return function(){var l=t.call(a,e);l.done(function(t){i.notify({curr:r,total:n,response:t,model:a})}),l.always(function(t){s.push(t),o.length?o.shift()():i.resolve(s); -})}}).value();return o.shift()(),i},isCopyable:function(t){var e=["HistoryDatasetAssociation","HistoryDatasetCollectionAssociation"];return a.isObject(t)&&t.id&&a.contains(e,t.model_class)},copy:function(t){var e,i,n;a.isString(t)?(e=t,n="hda",i="dataset"):(e=t.id,n={HistoryDatasetAssociation:"hda",LibraryDatasetDatasetAssociation:"ldda",HistoryDatasetCollectionAssociation:"hdca"}[t.model_class]||"hda",i="hdca"===n?"dataset_collection":"dataset");var s=this,o=r.post(this.url(),{content:e,source:n,type:i}).done(function(t){s.add([t])}).fail(function(t,a,r){s.trigger("error",s,o,{},"Error copying contents",{type:i,id:e,source:n})});return o},matches:function(t){return this.filter(function(e){return e.matches(t)})},createHDCA:function(t,e,n,s){var o=this,a={list:i.HistoryListDatasetCollection,paired:i.HistoryPairDatasetCollection},r=new a[e]({history_id:this.historyId,name:n,element_identifiers:t});return r.save().done(function(t){o.add(r)}).fail(function(t,e,i){o.trigger("error",t,e,i)})},clone:function(){var t=o.Collection.prototype.clone.call(this);return t.historyId=this.historyId,t},print:function(){var t=this;t.each(function(e){t.debug(e),e.elements&&t.debug(" elements:",e.elements)})},toString:function(){return["HistoryContents(",[this.historyId,this.length].join(),")"].join("")}});return{HistoryContents:d}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(3),i(1))},function(t,e,i){var n,s;(function(o,a,r,l){n=[i(6),i(5)],s=function(t,e){"use strict";var i="list",n=o.View.extend(t.LoggableMixin).extend({_logNamespace:i,initialize:function(t){this.expanded=t.expanded||!1,this.log(" expanded:",this.expanded),this.fxSpeed=void 0!==t.fxSpeed?t.fxSpeed:this.fxSpeed},fxSpeed:"fast",render:function(t){var e=this._buildNewRender();return this._setUpBehaviors(e),this._queueNewRender(e,t),this},_buildNewRender:function(){var t=a(this.templates.el(this.model.toJSON(),this));return this.expanded&&this.$details(t).replaceWith(this._renderDetails().show()),t},_queueNewRender:function(t,e){e=void 0===e?this.fxSpeed:e;var i=this;a(i).queue("fx",[function(t){this.$el.fadeOut(e,t)},function(e){i._swapNewRender(t),e()},function(t){this.$el.fadeIn(e,t)},function(t){this.trigger("rendered",i),t()}])},_swapNewRender:function(t){return this.$el.empty().attr("class",r.isFunction(this.className)?this.className():this.className).append(t.children())},_setUpBehaviors:function(t){t=t||this.$el,t.find("[title]").tooltip({placement:"bottom"})},$details:function(t){return t=t||this.$el,t.find("> .details")},_renderDetails:function(){var t=a(this.templates.details(this.model.toJSON(),this));return this._setUpBehaviors(t),t},toggleExpanded:function(t){return t=void 0===t?!this.expanded:t,t?this.expand():this.collapse(),this},expand:function(){var t=this;return t._fetchModelDetails().always(function(){t._expand()})},_fetchModelDetails:function(){return this.model.hasDetails()?l.when():this.model.fetch()},_expand:function(){var t=this,e=t._renderDetails();t.$details().replaceWith(e),t.expanded=!0,t.$details().slideDown({duration:t.fxSpeed,step:function(){t.trigger("expanding",t)},complete:function(){t.trigger("expanded",t)}})},collapse:function(){this.debug(this+"(ExpandableView).collapse");var t=this;t.expanded=!1,this.$details().slideUp({duration:t.fxSpeed,step:function(){t.trigger("collapsing",t)},complete:function(){t.trigger("collapsed",t)}})}}),s=n.extend(t.mixin(t.SelectableViewMixin,t.DraggableViewMixin,{tagName:"div",className:"list-item",initialize:function(e){n.prototype.initialize.call(this,e),t.SelectableViewMixin.initialize.call(this,e),t.DraggableViewMixin.initialize.call(this,e),this._setUpListeners()},_setUpListeners:function(){return this.on("selectable",function(t){t?this.$(".primary-actions").hide():this.$(".primary-actions").show()},this),this},_buildNewRender:function(){var t=n.prototype._buildNewRender.call(this);return t.children(".warnings").replaceWith(this._renderWarnings()),t.children(".title-bar").replaceWith(this._renderTitleBar()),t.children(".primary-actions").append(this._renderPrimaryActions()),t.find("> .title-bar .subtitle").replaceWith(this._renderSubtitle()),t},_swapNewRender:function(t){return n.prototype._swapNewRender.call(this,t),this.selectable&&this.showSelector(0),this.draggable&&this.draggableOn(),this.$el},_renderWarnings:function(){var t=this,e=a('
    '),i=t.model.toJSON();return r.each(t.templates.warnings,function(n){e.append(a(n(i,t)))}),e},_renderTitleBar:function(){return a(this.templates.titleBar(this.model.toJSON(),this))},_renderPrimaryActions:function(){return[]},_renderSubtitle:function(){return a(this.templates.subtitle(this.model.toJSON(),this))},events:{"click .title-bar":"_clickTitleBar","keydown .title-bar":"_keyDownTitleBar","click .selector":"toggleSelect"},_clickTitleBar:function(t){t.stopPropagation(),t.altKey?(this.toggleSelect(t),this.selectable||this.showSelector()):this.toggleExpanded()},_keyDownTitleBar:function(t){var e=32,i=13;return!t||"keydown"!==t.type||t.keyCode!==e&&t.keyCode!==i?!0:(this.toggleExpanded(),t.stopPropagation(),!1)},toString:function(){var t=this.model?this.model+"":"(no model)";return"ListItemView("+t+")"}}));s.prototype.templates=function(){var e=t.wrapTemplate(['
    ','
    ','
    ','',"
    ",'
    ','
    ','
    ',"
    "]),i={},n=t.wrapTemplate(['
    ','','
    ','<%- element.name %>',"
    ",'
    ',"
    "],"element"),s=t.wrapTemplate(['
    ']),o=t.wrapTemplate(['
    ']);return{el:e,warnings:i,titleBar:n,subtitle:s,details:o}}();var c=s.extend({foldoutStyle:"foldout",foldoutPanelClass:null,initialize:function(t){"drilldown"===this.foldoutStyle&&(this.expanded=!1),this.foldoutStyle=t.foldoutStyle||this.foldoutStyle,this.foldoutPanelClass=t.foldoutPanelClass||this.foldoutPanelClass,s.prototype.initialize.call(this,t),this.foldout=this._createFoldoutPanel()},_renderDetails:function(){if("drilldown"===this.foldoutStyle)return a();var t=s.prototype._renderDetails.call(this);return this._attachFoldout(this.foldout,t)},_createFoldoutPanel:function(){var t=this.model,e=this._getFoldoutPanelClass(t),i=this._getFoldoutPanelOptions(t),n=new e(r.extend(i,{model:t}));return n},_getFoldoutPanelClass:function(){return this.foldoutPanelClass},_getFoldoutPanelOptions:function(){return{foldoutStyle:this.foldoutStyle,fxSpeed:this.fxSpeed}},_attachFoldout:function(t,e){return e=e||this.$("> .details"),this.foldout=t.render(0),t.$("> .controls").hide(),e.append(t.$el)},expand:function(){var t=this;return t._fetchModelDetails().always(function(){"foldout"===t.foldoutStyle?t._expand():"drilldown"===t.foldoutStyle&&t._expandByDrilldown()})},_expandByDrilldown:function(){var t=this;t.listenTo(t.foldout,"close",function(){t.trigger("collapsed:drilldown",t,t.foldout)}),t.trigger("expanded:drilldown",t,t.foldout)}});return c.prototype.templates=function(){var e=t.wrapTemplate(['
    ',"
    "],"collection");return r.extend({},s.prototype.templates,{details:e})}(),{ExpandableView:n,ListItemView:s,FoldoutListItemView:c}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(2),i(1),i(3),i(1))},function(t,e,i){var n,s;(function(o){n=[i(4),i(56),i(7),i(38),i(44),i(18),i(28)],s=function(t,e,i,n,s,a,r){return n.extend({initialize:function(t){var i=this;n.prototype.initialize.call(this,t),this.deferred=new e,t.inputs?(this._buildForm(t),t.needs_update&&this.deferred.execute(function(t){i._updateModel(t)})):this.deferred.execute(function(e){i._buildModel(e,t,!0)})},remove:function(){var t=this;this.$el.hide(),this.deferred.execute(function(){n.prototype.remove.call(t),Galaxy.emit.debug("tool-form-base::remove()","Destroy view.")})},_buildForm:function(e){var i=this;this.options=t.merge(e,this.options),this.options=t.merge({icon:e.icon,title:""+e.name+" "+e.description+" (Galaxy Version "+e.version+")",operations:this._operations(),onchange:function(){i.deferred.reset(),i.deferred.execute(function(t){i._updateModel(t)})}},this.options),this.options.customize&&this.options.customize(this.options),this.render(),this.options.collapsible||this.$el.append(o("
    ").addClass("ui-margin-top-large").append(this._footer()))},_buildModel:function(e,n,s){var a=this;this.options.id=n.id,this.options.version=n.version;var r="",l={};n.job_id?r=Galaxy.root+"api/jobs/"+n.job_id+"/build_for_rerun":(r=Galaxy.root+"api/tools/"+n.id+"/build",Galaxy.params&&Galaxy.params.tool_id==n.id&&(l=o.extend({},Galaxy.params),n.version&&(l.tool_version=n.version))),t.request({type:"GET",url:r,data:l,success:function(t){return t=t.tool_model||t,t.display?(a._buildForm(t),!s&&a.message.update({status:"success",message:"Now you are using '"+a.options.name+"' version "+a.options.version+", id '"+a.options.id+"'.",persistent:!1}),Galaxy.emit.debug("tool-form-base::initialize()","Initial tool model ready.",t),void e.resolve()):void(window.location=Galaxy.root)},error:function(t,n){var s=t&&t.err_msg||"Uncaught error.";401==n.status?window.location=Galaxy.root+"user/login?"+o.param({redirect:Galaxy.root+"?tool_id="+a.options.id}):a.$el.is(":empty")?a.$el.prepend(new i.Message({message:s,status:"danger",persistent:!0,large:!0}).$el):Galaxy.modal&&Galaxy.modal.show({title:"Tool request failed",body:s,buttons:{Close:function(){Galaxy.modal.hide()}}}),Galaxy.emit.debug("tool-form::initialize()","Initial tool model request failed.",t),e.reject()}})},_updateModel:function(e){var i=this,n=this.options.update_url||Galaxy.root+"api/tools/"+this.options.id+"/build",s={tool_id:this.options.id,tool_version:this.options.version,inputs:o.extend(!0,{},i.data.create())};this.wait(!0),Galaxy.emit.debug("tool-form-base::_updateModel()","Sending current state.",s),t.request({type:"POST",url:n,data:s,success:function(t){i.update(t.tool_model||t),i.options.update&&i.options.update(t),i.wait(!1),Galaxy.emit.debug("tool-form-base::_updateModel()","Received new model.",t),e.resolve()},error:function(t){Galaxy.emit.debug("tool-form-base::_updateModel()","Refresh request failed.",t),e.reject()}})},_operations:function(){var t=this,e=this.options,n=new i.ButtonMenu({icon:"fa-cubes",title:!e.narrow&&"Versions"||null,tooltip:"Select another tool version"});if(!e.sustain_version&&e.versions&&e.versions.length>1)for(var o in e.versions){var a=e.versions[o];a!=e.version&&n.addMenu({title:"Switch to "+a,version:a,icon:"fa-cube",onclick:function(){var i=e.id.replace(e.version,this.version),n=this.version;t.deferred.reset(),t.deferred.execute(function(e){t._buildModel(e,{id:i,version:n})})}})}else n.$el.hide();var r=new i.ButtonMenu({icon:"fa-caret-down",title:!e.narrow&&"Options"||null,tooltip:"View available options"});return e.biostar_url&&(r.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(e.biostar_url+"/p/new/post/")}}),r.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(e.biostar_url+"/local/search/page/?q="+e.name)}})),r.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+Galaxy.root+"root?tool_id="+e.id)}}),Galaxy.user&&Galaxy.user.get("is_admin")&&r.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=Galaxy.root+"api/tools/"+e.id+"/download"}}),e.requirements&&e.requirements.length>0&&r.addMenu({icon:"fa-info-circle",title:"Requirements",tooltip:"Display tool requirements",onclick:function(){this.visible?(this.visible=!1,t.message.update({message:""})):(this.visible=!0,t.message.update({persistent:!0,message:s.requirements(e),status:"info"}))}}),e.sharable_url&&r.addMenu({icon:"fa-external-link",title:"See in Tool Shed",tooltip:"Access the repository",onclick:function(){window.open(e.sharable_url)}}),{menu:r,versions:n}},_footer:function(){var t=this.options,e=o("
    ").append(s.help(t));if(t.citations){var i=o("
    "),n=new a.ToolCitationCollection;n.tool_id=t.id;var l=new r.CitationListView({el:i,collection:n});l.render(),n.fetch(),e.append(i)}return e}})}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(1))},function(t,e,i){var n,s;(function(i){n=[],s=function(){return{help:function(t){var e=i("
    ").addClass("ui-form-help").append(t.help);return e.find("a").attr("target","_blank"),e},success:function(t){if(!t.jobs||!t.jobs.length)return this.error(t);var e=t.jobs.length,i="";i=1==e?"1 job has":e+" jobs have";var n='

    '+i+" been successfully added to the queue - resulting in the following datasets:

    ";for(var s in t.outputs)n+='

    '+t.outputs[s].hid+": "+t.outputs[s].name+"

    ";return n+="

    You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.

    "},error:function(t){return'

    The server could not complete the request. Please contact the Galaxy Team if this error persists.

    "},requirements:function(t){var e="This tool requires ";for(var i in t.requirements){var n=t.requirements[i];e+=n.name,n.version&&(e+=" (Version "+n.version+")"),ihere for more information.'}}}.apply(e,n),!(void 0!==s&&(t.exports=s))}).call(e,i(1))},function(t,e,i){var n,s;(function(o,a){n=[i(3),i(17),i(12),i(19)],s=function(t,e,i,n){"use strict";var s={hidden:!1,show:function(){this.set("hidden",!1)},hide:function(){this.set("hidden",!0)},toggle:function(){this.set("hidden",!this.get("hidden"))},is_visible:function(){return!this.attributes.hidden}},r=o.Model.extend({defaults:{name:null,label:null,type:null,value:null,html:null,num_samples:5},initialize:function(t){this.attributes.html=unescape(this.attributes.html)},copy:function(){return new r(this.toJSON())},set_value:function(t){this.set("value",t||"")}}),l=o.Collection.extend({model:r}),c=r.extend({}),d=r.extend({set_value:function(t){this.set("value",parseInt(t,10))},get_samples:function(){return d3.scale.linear().domain([this.get("min"),this.get("max")]).ticks(this.get("num_samples"))}}),h=d.extend({set_value:function(t){this.set("value",parseFloat(t))}}),u=r.extend({get_samples:function(){return t.map(this.get("options"),function(t){return t[0]})}});r.subModelTypes={integer:d,"float":h,data:c,select:u};var p=o.Model.extend({defaults:{id:null,name:null,description:null,target:null,inputs:[],outputs:[]},urlRoot:Galaxy.root+"api/tools",initialize:function(e){this.set("inputs",new l(t.map(e.inputs,function(t){var e=r.subModelTypes[t.type]||r;return new e(t)})))},toJSON:function(){var t=o.Model.prototype.toJSON.call(this);return t.inputs=this.get("inputs").map(function(t){return t.toJSON()}),t},remove_inputs:function(t){var e=this,i=e.get("inputs").filter(function(e){return-1!==t.indexOf(e.get("type"))});e.get("inputs").remove(i)},copy:function(t){var e=new p(this.toJSON());if(t){var i=new o.Collection;e.get("inputs").each(function(t){t.get_samples()&&i.push(t)}),e.set("inputs",i)}return e},apply_search_results:function(e){return-1!==t.indexOf(e,this.attributes.id)?this.show():this.hide(),this.is_visible()},set_input_value:function(t,e){this.get("inputs").find(function(e){return e.get("name")===t}).set("value",e)},set_input_values:function(e){var i=this;t.each(t.keys(e),function(t){i.set_input_value(t,e[t])})},run:function(){return this._run()},rerun:function(t,e){return this._run({action:"rerun",target_dataset_id:t.id,regions:e})},get_inputs_dict:function(){var t={};return this.get("inputs").each(function(e){t[e.get("name")]=e.get("value")}),t},_run:function(n){var s=t.extend({tool_id:this.id,inputs:this.get_inputs_dict()},n),o=a.Deferred(),r=new e.ServerStateDeferred({ajax_settings:{url:this.urlRoot,data:JSON.stringify(s),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});return a.when(r.go()).then(function(t){o.resolve(new i.DatasetCollection(t))}),o}});t.extend(p.prototype,s);var g=(o.View.extend({}),o.Collection.extend({model:p})),f=o.Model.extend(s),m=o.Model.extend({defaults:{elems:[],open:!1},clear_search_results:function(){t.each(this.attributes.elems,function(t){t.show()}),this.show(),this.set("open",!1)},apply_search_results:function(e){var i,n=!0;t.each(this.attributes.elems,function(t){t instanceof f?(i=t,i.hide()):t instanceof p&&t.apply_search_results(e)&&(n=!1,i&&i.show())}),n?this.hide():(this.show(),this.set("open",!0))}});t.extend(m.prototype,s);var v=o.Model.extend({defaults:{search_hint_string:"search tools",min_chars_for_search:3,clear_btn_url:"",search_url:"",visible:!0,query:"",results:null,clear_key:27},urlRoot:Galaxy.root+"api/tools",initialize:function(){this.on("change:query",this.do_search)},do_search:function(){var t=this.attributes.query;if(t.length");if(t.append(S.tool_link(this.model.toJSON())),"upload1"===this.model.id)t.find("a").on("click",function(t){t.preventDefault(),Galaxy.upload.show()});else if("Tool"===this.model.get("model_class")){var e=this;t.find("a").on("click",function(t){t.preventDefault();var i=new n.View({id:e.model.id,version:e.model.get("version")});i.deferred.execute(function(){Galaxy.app.display(i)})})}return this.$el.append(t),this}}),w=y.extend({tagName:"div",className:"toolPanelLabel",render:function(){return this.$el.append(a("").text(this.model.attributes.text)),this}}),x=y.extend({tagName:"div",className:"toolSectionWrapper",initialize:function(){y.prototype.initialize.call(this),this.model.on("change:open",this.update_open,this)},render:function(){this.$el.append(S.panel_section(this.model.toJSON()));var e=this.$el.find(".toolSectionBody");return t.each(this.model.attributes.elems,function(t){if(t instanceof p){var i=new b({model:t,className:"toolTitle"});i.render(),e.append(i.$el)}else if(t instanceof f){var n=new w({model:t});n.render(),e.append(n.$el)}}),this},events:{"click .toolSectionTitle > a":"toggle"},toggle:function(){this.model.set("open",!this.model.attributes.open)},update_open:function(){this.model.attributes.open?this.$el.children(".toolSectionBody").slideDown("fast"):this.$el.children(".toolSectionBody").slideUp("fast")}}),C=o.View.extend({tagName:"div",id:"tool-search",className:"bar",events:{click:"focus_and_select","keyup :input":"query_changed","click #search-clear-btn":"clear"},render:function(){return this.$el.append(S.tool_search(this.model.toJSON())),this.model.is_visible()||this.$el.hide(),this.$el.find("[title]").tooltip(),this},focus_and_select:function(){this.$el.find(":input").focus().select()},clear:function(){return this.model.clear_search(),this.$el.find(":input").val(""),this.focus_and_select(),!1},query_changed:function(t){return this.model.attributes.clear_key&&this.model.attributes.clear_key===t.which?(this.clear(),!1):void this.model.set("query",this.$el.find(":input").val())}}),$=o.View.extend({tagName:"div",className:"toolMenu",initialize:function(){this.model.get("tool_search").on("change:results",this.handle_search_results,this)},render:function(){var t=this,e=new C({model:this.model.get("tool_search")});return e.render(),t.$el.append(e.$el),this.model.get("layout").each(function(e){if(e instanceof m){var i=new x({model:e});i.render(),t.$el.append(i.$el)}else if(e instanceof p){var n=new b({model:e,className:"toolTitleNoSection"});n.render(),t.$el.append(n.$el)}else if(e instanceof f){var s=new w({model:e});s.render(),t.$el.append(s.$el)}}),t.$el.find("a.tool-link").click(function(e){var i=a(this).attr("class").split(/\s+/)[0],n=t.model.get("tools").get(i);t.trigger("tool_link_click",e,n)}),this},handle_search_results:function(){var t=this.model.get("tool_search").get("results");t&&0===t.length?a("#search-no-results").show():a("#search-no-results").hide()}}),E=o.View.extend({className:"toolForm",render:function(){this.$el.children().remove(),this.$el.append(S.tool_form(this.model.toJSON()))}}),S=(o.View.extend({className:"toolMenuAndView",initialize:function(){this.tool_panel_view=new $({collection:this.collection}),this.tool_form_view=new E},render:function(){this.tool_panel_view.render(),this.tool_panel_view.$el.css("float","left"),this.$el.append(this.tool_panel_view.$el),this.tool_form_view.$el.hide(),this.$el.append(this.tool_form_view.$el);var t=this;this.tool_panel_view.on("tool_link_click",function(e,i){e.preventDefault(),t.show_tool(i)})},show_tool:function(t){var e=this;t.fetch().done(function(){e.tool_form_view.model=t,e.tool_form_view.render(),e.tool_form_view.$el.show(),a("#left").width("650px")})}}),{tool_search:t.template(['',' ',''].join("")),panel_section:t.template(['
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    ",'