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Rename datatype extension 'bam_native' to 'unsorted.bam'.

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We handle other bam types this way and other more specific variants of an extension (e.g. thermo.raw) so this feels like the more consistent thing to do.
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John Chilton
2018-03-12 12:29:57 -04:00
parent c034ab3f0b
commit 2db95b4d1d
11 changed files with 17 additions and 17 deletions
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doc/source/releases/18.01_announce.rst
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@@ -50,7 +50,7 @@ Highlights
- ``qname_sorted.bam``, that ensures that the file is queryname sorted (e.g. ``SO:queryname``);
- ``qname_input_sorted.bam``, that can be used to describe the output of aligners which generally keep mate pairs adjacent
- ``native_bam``, that makes no assumptions about the sort order of the file.
- ``unsorted.bam``, that makes no assumptions about the sort order of the file.
A huge thanks goes out to `@bgruening <https://github.com/bgruening>`__ and `@mvdbeek <https://github.com/mvdbeek>`__ who
implemented these datatypes.