From 2d27004b23c52fdcd14bec0c6c4d69102208d948 Mon Sep 17 00:00:00 2001
From: Nicola Soranzo <nicola.soranzo@earlham.ac.uk>
Date: Mon, 23 Mar 2026 00:32:56 +0000
Subject: [PATCH] Update fastmcp requirement to 3.0.2

and update its dependencies. This is needed to drop the requirement
on redis 7.1.0, which conflicts with our conditional requirement
`redis>=5.3.0,<6` , which is needed for compatibility with celery 5.6.2 .

Fix https://github.com/galaxyproject/galaxy/issues/22201 .
---
 .../dependencies/pinned-requirements.txt      | 22 +++++--------------
 1 file changed, 6 insertions(+), 16 deletions(-)

diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt
index d83edca597f..e3b54823bb4 100644
--- a/lib/galaxy/dependencies/pinned-requirements.txt
+++ b/lib/galaxy/dependencies/pinned-requirements.txt
@@ -4,6 +4,7 @@ a2wsgi==1.10.10
 adal==1.2.7
 ag-ui-protocol==0.1.10
 aiobotocore==3.1.1
+aiofile==3.9.0
 aiofiles==25.1.0
 aiohappyeyeballs==2.6.1
 aiohttp==3.13.3
@@ -19,7 +20,7 @@ apispec==6.9.0
 appdirs==1.4.4
 arcp==0.2.1
 argcomplete==3.6.3
-async-timeout==5.0.1 ; python_full_version < '3.11.3'
+async-timeout==5.0.1 ; python_full_version < '3.11'
 attmap==0.13.2
 attrs==25.4.0
 authlib==1.6.6
@@ -41,6 +42,7 @@ botocore==1.42.30
 bx-python==0.14.0
 cachecontrol==0.14.4
 cachetools==6.2.4
+caio==0.9.25
 celery==5.6.2
 certifi==2026.1.4
 cffi==2.0.0 ; implementation_name == 'pypy' or platform_python_implementation != 'PyPy'
@@ -52,7 +54,6 @@ click-plugins==1.1.1.2
 click-repl==0.3.0
 cloudauthz==0.6.0
 cloudbridge==3.2.0
-cloudpickle==3.1.2
 cohere==5.20.2 ; sys_platform != 'emscripten'
 colorama==0.4.6
 coloredlogs==15.0.1
@@ -67,7 +68,6 @@ defusedxml==0.7.1
 deprecated==1.3.1
 deprecation==2.1.0
 dictobj==0.4
-diskcache==5.6.3
 distro==1.9.0
 dnspython==2.8.0
 docopt==0.6.2
@@ -81,10 +81,9 @@ et-xmlfile==2.0.0
 eval-type-backport==0.3.1
 exceptiongroup==1.3.1
 executing==2.2.1
-fakeredis==2.33.0
 fastapi==0.128.0
 fastavro==1.12.1 ; sys_platform != 'emscripten'
-fastmcp==2.14.4
+fastmcp==3.0.2
 filelock==3.20.3
 fissix==24.4.24
 frozenlist==1.8.0
@@ -140,7 +139,6 @@ legacy-cgi==2.6.4 ; python_full_version >= '3.13'
 limits==5.6.0
 logfire==4.19.0
 logfire-api==4.19.0
-lupa==2.6
 lxml==6.0.2
 mako==1.3.10
 markdown==3.10.1
@@ -173,7 +171,6 @@ openpyxl==3.1.5
 opentelemetry-api==1.39.1
 opentelemetry-exporter-otlp-proto-common==1.39.1
 opentelemetry-exporter-otlp-proto-http==1.39.1
-opentelemetry-exporter-prometheus==0.60b1
 opentelemetry-instrumentation==0.60b1
 opentelemetry-instrumentation-httpx==0.60b1
 opentelemetry-proto==1.39.1
@@ -188,11 +185,9 @@ parsley==1.3
 paste==3.10.1
 pastedeploy==3.1.0
 pathable==0.4.4
-pathvalidate==3.3.1
 pebble==5.1.3
 pillow==12.1.0
 platformdirs==4.5.1
-prometheus-client==0.24.1
 prompt-toolkit==3.0.52
 propcache==0.4.1
 proto-plus==1.27.0
@@ -200,8 +195,7 @@ protobuf==6.33.4
 prov==1.5.1
 psutil==7.2.1
 pulsar-galaxy-lib==0.15.14
-py-key-value-aio==0.3.0
-py-key-value-shared==0.3.0
+py-key-value-aio==0.4.4
 pyasn1==0.6.2
 pyasn1-modules==0.4.2
 pycparser==3.0 ; (implementation_name != 'PyPy' and platform_python_implementation != 'PyPy') or (implementation_name == 'pypy' and platform_python_implementation == 'PyPy')
@@ -215,7 +209,6 @@ pydantic-graph==1.44.0
 pydantic-settings==2.12.0
 pydantic-tes==0.2.0
 pydicom==3.0.1
-pydocket==0.16.6
 pydot==4.0.1
 pyeventsystem==0.1.0
 pyfaidx==0.9.0.3
@@ -231,7 +224,6 @@ pyreadline3==3.5.4 ; sys_platform == 'win32'
 pysam==0.23.3
 python-dateutil==2.9.0.post0
 python-dotenv==1.2.1
-python-json-logger==4.0.0
 python-magic==0.4.27
 python-multipart==0.0.22
 python-slugify==8.0.4
@@ -242,7 +234,6 @@ pywin32-ctypes==0.2.3 ; sys_platform == 'win32'
 pyyaml==6.0.3
 pyzmq==27.1.0
 rdflib==7.5.0
-redis==7.1.0
 referencing==0.36.2
 refgenconf==0.12.2
 regex==2026.1.15
@@ -265,7 +256,6 @@ s3transfer==0.16.0
 schema-salad==8.9.20251102115403
 secretstorage==3.5.0 ; sys_platform == 'linux'
 setuptools==80.10.1
-shellingham==1.5.4
 six==1.17.0
 slowapi==0.1.9
 sniffio==1.3.1
@@ -292,7 +282,6 @@ tornado==6.5.4
 tqdm==4.67.1
 tuspy==1.1.0
 tuspyserver==4.2.3
-typer==0.21.1
 types-protobuf==6.32.1.20251210
 types-requests==2.32.4.20260107 ; sys_platform != 'emscripten'
 typing-extensions==4.15.0
@@ -304,6 +293,7 @@ urllib3==2.6.3
 uvicorn==0.40.0
 uvloop==0.22.1
 vine==5.1.0
+watchfiles==1.1.1
 wcwidth==0.3.2
 webencodings==0.5.1
 webob==1.8.9