From 2c45f356a942a64fb6506358d793bc2c4b4579f9 Mon Sep 17 00:00:00 2001 From: carlfeberhard Date: Wed, 30 Sep 2015 15:08:32 -0400 Subject: [PATCH] UI, Collections: correct foldout expansion for collections only re-rendering on 'populated' or 'visible' change; correct foldout expansion in published histories by giving dataset collection elements an api endpoint and moving 'rerunnable' and 'creating_job' fetch into li-edit --- .../mvc/collection/collection-model.js | 8 ++++++++ .../scripts/mvc/dataset/dataset-li-edit.js | 19 +++++++++++++++++++ .../galaxy/scripts/mvc/dataset/dataset-li.js | 8 -------- client/galaxy/scripts/mvc/history/hdca-li.js | 4 ++-- .../mvc/collection/collection-model.js.map | 2 +- .../maps/mvc/dataset/dataset-li-edit.js.map | 2 +- static/maps/mvc/dataset/dataset-li.js.map | 2 +- static/maps/mvc/history/hdca-li.js.map | 2 +- .../mvc/collection/collection-model.js | 2 +- static/scripts/mvc/dataset/dataset-li-edit.js | 2 +- static/scripts/mvc/dataset/dataset-li.js | 2 +- static/scripts/mvc/history/hdca-li.js | 2 +- 12 files changed, 37 insertions(+), 18 deletions(-) diff --git a/client/galaxy/scripts/mvc/collection/collection-model.js b/client/galaxy/scripts/mvc/collection/collection-model.js index 49da237372c..3d89aa5b019 100644 --- a/client/galaxy/scripts/mvc/collection/collection-model.js +++ b/client/galaxy/scripts/mvc/collection/collection-model.js @@ -126,6 +126,14 @@ var DatasetDCE = DATASET_MODEL.DatasetAssociation.extend( BASE_MVC.mixin( Datase /** logger used to record this.log messages, commonly set to console */ //logger : console, + /** root api url */ + urlRoot : (( window.galaxy_config && galaxy_config.root )?( galaxy_config.root ):( '/' )) + 'api/datasets', + + /** url fn */ + url : function(){ + return this.urlRoot + '/' + this.id; + }, + defaults : _.extend( {}, DATASET_MODEL.DatasetAssociation.prototype.defaults, DatasetCollectionElementMixin.defaults diff --git a/client/galaxy/scripts/mvc/dataset/dataset-li-edit.js b/client/galaxy/scripts/mvc/dataset/dataset-li-edit.js index 74d8c465913..8938713e187 100644 --- a/client/galaxy/scripts/mvc/dataset/dataset-li-edit.js +++ b/client/galaxy/scripts/mvc/dataset/dataset-li-edit.js @@ -109,6 +109,25 @@ var DatasetListItemEdit = _super.extend( }, // ......................................................................... details + /** In this override, only get details if in the ready state, get rerunnable if in other states. + * Note: fetch with no 'change' event triggering to prevent automatic rendering. + */ + _fetchModelDetails : function(){ + var view = this; + if( view.model.inReadyState() && !view.model.hasDetails() ){ + return view.model.fetch({ silent: true }); + + // special case the need for the rerunnable and creating_job attributes + // needed for rendering re-run button on queued, running datasets + } else if( !view.model.has( 'rerunnable' ) ){ + return view.model.fetch({ silent: true, data: { + // only fetch rerunnable and creating_job to keep overhead down + keys: [ 'rerunnable', 'creating_job' ].join(',') + }}); + } + return jQuery.when(); + }, + /** In this override, add tags and annotations controls, make the ? dbkey a link to editing page */ _renderDetails : function(){ //TODO: generalize to be allow different details for each state diff --git a/client/galaxy/scripts/mvc/dataset/dataset-li.js b/client/galaxy/scripts/mvc/dataset/dataset-li.js index 09c390fe220..d5468ed3f86 100644 --- a/client/galaxy/scripts/mvc/dataset/dataset-li.js +++ b/client/galaxy/scripts/mvc/dataset/dataset-li.js @@ -65,14 +65,6 @@ var DatasetListItemView = _super.extend( var view = this; if( view.model.inReadyState() && !view.model.hasDetails() ){ return view.model.fetch({ silent: true }); - - // special case the need for the rerunnable and creating_job attributes - // needed for rendering re-run button on queued, running datasets - } else if( !view.model.has( 'rerunnable' ) ){ - return view.model.fetch({ silent: true, data: { - // only fetch rerunnable and creating_job to keep overhead down - keys: [ 'rerunnable', 'creating_job' ].join(',') - }}); } return jQuery.when(); }, diff --git a/client/galaxy/scripts/mvc/history/hdca-li.js b/client/galaxy/scripts/mvc/history/hdca-li.js index b2b9977ef4e..969da073fe1 100644 --- a/client/galaxy/scripts/mvc/history/hdca-li.js +++ b/client/galaxy/scripts/mvc/history/hdca-li.js @@ -22,8 +22,8 @@ var HDCAListItemView = _super.extend( _setUpListeners : function(){ _super.prototype._setUpListeners.call( this ); - this.model.on( 'change', function( model, options ){ - this.render(); + this.model.on({ + 'change:populated change:visible' : function( model, options ){ this.render(); }, }, this ); }, diff --git a/static/maps/mvc/collection/collection-model.js.map b/static/maps/mvc/collection/collection-model.js.map index 534ce4c9de0..6cd4bf2ae46 100644 --- a/static/maps/mvc/collection/collection-model.js.map +++ b/static/maps/mvc/collection/collection-model.js.map @@ -1 +1 @@ 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a=[this.get("id"),this.get("name")||this.get("element_identifier")];return"DatasetCollection("+a.join(",")+")"}}),i=h.extend({collectionClass:g,initialize:function(a,b){this.debug(this+"(ListDatasetCollection).initialize:",a,b),h.prototype.initialize.call(this,a,b)},toString:function(){return["ListDatasetCollection(",this.get("name"),")"].join("")}}),j=i.extend({initialize:function(a,b){this.debug(this+"(PairDatasetCollection).initialize:",a,b),i.prototype.initialize.call(this,a,b)},toString:function(){return["PairDatasetCollection(",this.get("name"),")"].join("")}}),k=h.extend(b.mixin(c,{constructor:function(a,b){this.debug(" NestedDCDCE.constructor:",a,b),c.constructor.call(this,a,b)},toString:function(){var a=this.object?""+this.object:this.get("element_identifier");return["NestedDCDCE(",a,")"].join("")}})),l=e.extend({model:k,initialize:function(a,b){this.debug(this+"(NestedDCDCECollection).initialize:",a,b),e.prototype.initialize.call(this,a,b)},toString:function(){return["NestedDCDCECollection(",this.length,")"].join("")}}),m=j.extend(b.mixin(c,{constructor:function(a,b){this.debug(" NestedPairDCDCE.constructor:",a,b),c.constructor.call(this,a,b)},toString:function(){var a=this.object?""+this.object:this.get("element_identifier");return["NestedPairDCDCE(",a,")"].join("")}})),n=l.extend({model:m,initialize:function(a,b){this.debug(this+"(NestedPairDCDCECollection).initialize:",a,b),l.prototype.initialize.call(this,a,b)},toString:function(){return["NestedPairDCDCECollection(",this.length,")"].join("")}}),o=h.extend({collectionClass:n,initialize:function(a,b){this.debug(this+"(ListPairedDatasetCollection).initialize:",a,b),h.prototype.initialize.call(this,a,b)},toString:function(){return["ListPairedDatasetCollection(",this.get("name"),")"].join("")}});return{ListDatasetCollection:i,PairDatasetCollection:j,ListPairedDatasetCollection:o}}); +define(["mvc/dataset/dataset-model","mvc/base-mvc","utils/localization"],function(a,b){var c={defaults:{model_class:"DatasetCollectionElement",element_identifier:null,element_index:null,element_type:null},_mergeObject:function(a){return _.extend(a,a.object,{element_id:a.id}),delete a.object,a},constructor:function(a){a=this._mergeObject(a),this.idAttribute="element_id",Backbone.Model.apply(this,arguments)},parse:function(a){var b=a;return b=this._mergeObject(b)}},d=Backbone.Model.extend(b.LoggableMixin).extend(c),e=Backbone.Collection.extend(b.LoggableMixin).extend({model:d,initialize:function(a,b){this.debug(this+"(DCECollection).initialize:",a,b),b=b||{}},toString:function(){return["DatasetCollectionElementCollection(",this.length,")"].join("")}}),f=a.DatasetAssociation.extend(b.mixin(c,{urlRoot:(window.galaxy_config&&galaxy_config.root?galaxy_config.root:"/")+"api/datasets",url:function(){return this.urlRoot+"/"+this.id},defaults:_.extend({},a.DatasetAssociation.prototype.defaults,c.defaults),constructor:function(a,b){this.debug(" DatasetDCE.constructor:",a,b),c.constructor.call(this,a,b)},initialize:function(b,c){this.debug(this+"(DatasetDCE).initialize:",b,c),a.DatasetAssociation.prototype.initialize.call(this,b,c)},toString:function(){var a=this.get("element_identifier");return["DatasetDCE(",a,")"].join("")}})),g=e.extend({model:f,initialize:function(a,b){this.debug(this+"(DatasetDCECollection).initialize:",a,b),e.prototype.initialize.call(this,a,b)},toString:function(){return["DatasetDCECollection(",this.length,")"].join("")}}),h=Backbone.Model.extend(b.LoggableMixin).extend(b.SearchableModelMixin).extend({defaults:{collection_type:null,deleted:!1},collectionClass:e,initialize:function(a,b){this.debug(this+"(DatasetCollection).initialize:",a,b,this),this.elements=this._createElementsModel(),this.on("change:elements",function(){this.log("change:elements"),this.elements=this._createElementsModel()})},_createElementsModel:function(){this.debug(this+"._createElementsModel",this.collectionClass,this.get("elements"),this.elements);var a=this.get("elements")||[];return this.unset("elements",{silent:!0}),this.elements=new this.collectionClass(a),this.elements},toJSON:function(){var a=Backbone.Model.prototype.toJSON.call(this);return this.elements&&(a.elements=this.elements.toJSON()),a},inReadyState:function(){var a=this.get("populated");return this.isDeletedOrPurged()||a},hasDetails:function(){return this.debug("hasDetails:",this.elements.length),0!==this.elements.length},getVisibleContents:function(){return this.elements},"delete":function(a){return this.get("deleted")?jQuery.when():this.save({deleted:!0},a)},undelete:function(a){return!this.get("deleted")||this.get("purged")?jQuery.when():this.save({deleted:!1},a)},isDeletedOrPurged:function(){return this.get("deleted")||this.get("purged")},searchAttributes:["name"],toString:function(){var a=[this.get("id"),this.get("name")||this.get("element_identifier")];return"DatasetCollection("+a.join(",")+")"}}),i=h.extend({collectionClass:g,initialize:function(a,b){this.debug(this+"(ListDatasetCollection).initialize:",a,b),h.prototype.initialize.call(this,a,b)},toString:function(){return["ListDatasetCollection(",this.get("name"),")"].join("")}}),j=i.extend({initialize:function(a,b){this.debug(this+"(PairDatasetCollection).initialize:",a,b),i.prototype.initialize.call(this,a,b)},toString:function(){return["PairDatasetCollection(",this.get("name"),")"].join("")}}),k=h.extend(b.mixin(c,{constructor:function(a,b){this.debug(" NestedDCDCE.constructor:",a,b),c.constructor.call(this,a,b)},toString:function(){var a=this.object?""+this.object:this.get("element_identifier");return["NestedDCDCE(",a,")"].join("")}})),l=e.extend({model:k,initialize:function(a,b){this.debug(this+"(NestedDCDCECollection).initialize:",a,b),e.prototype.initialize.call(this,a,b)},toString:function(){return["NestedDCDCECollection(",this.length,")"].join("")}}),m=j.extend(b.mixin(c,{constructor:function(a,b){this.debug(" NestedPairDCDCE.constructor:",a,b),c.constructor.call(this,a,b)},toString:function(){var a=this.object?""+this.object:this.get("element_identifier");return["NestedPairDCDCE(",a,")"].join("")}})),n=l.extend({model:m,initialize:function(a,b){this.debug(this+"(NestedPairDCDCECollection).initialize:",a,b),l.prototype.initialize.call(this,a,b)},toString:function(){return["NestedPairDCDCECollection(",this.length,")"].join("")}}),o=h.extend({collectionClass:n,initialize:function(a,b){this.debug(this+"(ListPairedDatasetCollection).initialize:",a,b),h.prototype.initialize.call(this,a,b)},toString:function(){return["ListPairedDatasetCollection(",this.get("name"),")"].join("")}});return{ListDatasetCollection:i,PairDatasetCollection:j,ListPairedDatasetCollection:o}}); //# sourceMappingURL=../../../maps/mvc/collection/collection-model.js.map \ No newline at end of file diff --git a/static/scripts/mvc/dataset/dataset-li-edit.js b/static/scripts/mvc/dataset/dataset-li-edit.js index 031e28ce9fe..a1272b034d8 100644 --- a/static/scripts/mvc/dataset/dataset-li-edit.js +++ b/static/scripts/mvc/dataset/dataset-li-edit.js @@ -1,2 +1,2 @@ -define(["mvc/dataset/states","mvc/dataset/dataset-li","mvc/tags","mvc/annotations","ui/fa-icon-button","mvc/base-mvc","mvc/tools/tools-form","utils/localization"],function(a,b,c,d,e,f,g,h){var i=b.DatasetListItemView,j=i.extend({initialize:function(a){i.prototype.initialize.call(this,a),this.hasUser=a.hasUser,this.purgeAllowed=a.purgeAllowed||!1,this.tagsEditorShown=a.tagsEditorShown||!1,this.annotationEditorShown=a.annotationEditorShown||!1},_renderPrimaryActions:function(){var b=i.prototype._renderPrimaryActions.call(this);return this.model.get("state")===a.NOT_VIEWABLE?b:i.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){if(this.model.get("state")===a.DISCARDED||!this.model.get("accessible"))return null;var b=this.model.get("purged"),c=this.model.get("deleted"),d={title:h("Edit attributes"),href:this.model.urls.edit,target:this.linkTarget,faIcon:"fa-pencil",classes:"edit-btn"};return c||b?(d.disabled=!0,b?d.title=h("Cannot edit attributes of datasets removed from disk"):c&&(d.title=h("Undelete dataset to edit attributes"))):_.contains([a.UPLOAD,a.NEW],this.model.get("state"))&&(d.disabled=!0,d.title=h("This dataset is not yet editable")),e(d)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var a=this,b=this.model.isDeletedOrPurged();return e({title:h(b?"Dataset is already deleted":"Delete"),disabled:b,faIcon:"fa-times",classes:"delete-btn",onclick:function(){a.$el.find(".icon-btn.delete-btn").trigger("mouseout"),a.model.delete()}})},_renderDetails:function(){var b=i.prototype._renderDetails.call(this),c=this.model.get("state");return!this.model.isDeletedOrPurged()&&_.contains([a.OK,a.FAILED_METADATA],c)&&(this._renderTags(b),this._renderAnnotation(b),this._makeDbkeyEditLink(b)),this._setUpBehaviors(b),b},_renderSecondaryActions:function(){var b=i.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case a.UPLOAD:case a.NEW:case a.NOT_VIEWABLE:return b;case a.ERROR:return b.unshift(this._renderErrButton()),b.concat([this._renderRerunButton()]);case a.OK:case a.FAILED_METADATA:return b.concat([this._renderRerunButton(),this._renderVisualizationsButton()])}return b.concat([this._renderRerunButton()])},_renderErrButton:function(){return e({title:h("View or report this error"),href:this.model.urls.report_error,classes:"report-error-btn",target:this.linkTarget,faIcon:"fa-bug"})},_renderRerunButton:function(){var a=this.model.get("creating_job");return this.model.get("rerunnable")?e({title:h("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(b){b.preventDefault();var c=new g.View({job_id:a});c.deferred.execute(function(){Galaxy.app.display(c.$el)})}}):void 0},_renderVisualizationsButton:function(){var a=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||_.isEmpty(a))return null;if(!_.isObject(a[0]))return this.warn("Visualizations have been switched off"),null;var b=$(this.templates.visualizations(a,this));return b.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(b.find(".visualization-link").addBack(".visualization-link")),b},_addScratchBookFn:function(a){a.click(function(a){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:"Visualization",type:"url",content:$(this).attr("href")}),a.preventDefault(),a.stopPropagation())})},_renderTags:function(a){if(this.hasUser){var b=this;this.tagsEditor=new c.TagsEditor({model:this.model,el:a.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.tagsEditorShown=!0},onhide:function(){b.tagsEditorShown=!1},$activator:e({title:h("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(a.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(a){if(this.hasUser){var b=this;this.annotationEditor=new d.AnnotationEditor({model:this.model,el:a.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.annotationEditorShown=!0},onhide:function(){b.annotationEditorShown=!1},$activator:e({title:h("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(a.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(a){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var b=$('?').attr("href",this.model.urls.edit).attr("target",this.linkTarget);a.find(".dbkey .value").replaceWith(b)}},events:_.extend(_.clone(i.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(a){this.trigger("edit",this,a)},"click .delete-btn":function(a){this.trigger("delete",this,a)},"click .rerun-btn":function(a){this.trigger("rerun",this,a)},"click .report-err-btn":function(a){this.trigger("report-err",this,a)},"click .visualization-btn":function(a){this.trigger("visualize",this,a)},"click .dbkey a":function(a){this.trigger("edit",this,a)}}),_clickUndeleteLink:function(){return this.model.undelete(),!1},_clickPurgeLink:function(){return this.model.purge(),!1},toString:function(){var a=this.model?this.model+"":"(no model)";return"HDAEditView("+a+")"}});return j.prototype.templates=function(){var a=_.extend({},i.prototype.templates.warnings,{failed_metadata:f.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','
',h("An error occurred setting the metadata for this dataset"),'
',h("Set it manually or retry auto-detection"),"","
","<% } %>"],"dataset"),deleted:f.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'
',h("This dataset has been deleted"),'
',h("Undelete it"),"","<% if( view.purgeAllowed ){ %>",'
',h("Permanently remove it from disk"),"","<% } %>","
","<% } %>"],"dataset")}),b=f.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'">','',"","<% } else { %>",'
','','',"",'","
","<% } %>"],"visualizations");return _.extend({},i.prototype.templates,{warnings:a,visualizations:b})}(),{DatasetListItemEdit:j}}); +define(["mvc/dataset/states","mvc/dataset/dataset-li","mvc/tags","mvc/annotations","ui/fa-icon-button","mvc/base-mvc","mvc/tools/tools-form","utils/localization"],function(a,b,c,d,e,f,g,h){var i=b.DatasetListItemView,j=i.extend({initialize:function(a){i.prototype.initialize.call(this,a),this.hasUser=a.hasUser,this.purgeAllowed=a.purgeAllowed||!1,this.tagsEditorShown=a.tagsEditorShown||!1,this.annotationEditorShown=a.annotationEditorShown||!1},_renderPrimaryActions:function(){var b=i.prototype._renderPrimaryActions.call(this);return this.model.get("state")===a.NOT_VIEWABLE?b:i.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){if(this.model.get("state")===a.DISCARDED||!this.model.get("accessible"))return null;var b=this.model.get("purged"),c=this.model.get("deleted"),d={title:h("Edit attributes"),href:this.model.urls.edit,target:this.linkTarget,faIcon:"fa-pencil",classes:"edit-btn"};return c||b?(d.disabled=!0,b?d.title=h("Cannot edit attributes of datasets removed from disk"):c&&(d.title=h("Undelete dataset to edit attributes"))):_.contains([a.UPLOAD,a.NEW],this.model.get("state"))&&(d.disabled=!0,d.title=h("This dataset is not yet editable")),e(d)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var a=this,b=this.model.isDeletedOrPurged();return e({title:h(b?"Dataset is already deleted":"Delete"),disabled:b,faIcon:"fa-times",classes:"delete-btn",onclick:function(){a.$el.find(".icon-btn.delete-btn").trigger("mouseout"),a.model.delete()}})},_fetchModelDetails:function(){var a=this;return a.model.inReadyState()&&!a.model.hasDetails()?a.model.fetch({silent:!0}):a.model.has("rerunnable")?jQuery.when():a.model.fetch({silent:!0,data:{keys:["rerunnable","creating_job"].join(",")}})},_renderDetails:function(){var b=i.prototype._renderDetails.call(this),c=this.model.get("state");return!this.model.isDeletedOrPurged()&&_.contains([a.OK,a.FAILED_METADATA],c)&&(this._renderTags(b),this._renderAnnotation(b),this._makeDbkeyEditLink(b)),this._setUpBehaviors(b),b},_renderSecondaryActions:function(){var b=i.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case a.UPLOAD:case a.NEW:case a.NOT_VIEWABLE:return b;case a.ERROR:return b.unshift(this._renderErrButton()),b.concat([this._renderRerunButton()]);case a.OK:case a.FAILED_METADATA:return b.concat([this._renderRerunButton(),this._renderVisualizationsButton()])}return b.concat([this._renderRerunButton()])},_renderErrButton:function(){return e({title:h("View or report this error"),href:this.model.urls.report_error,classes:"report-error-btn",target:this.linkTarget,faIcon:"fa-bug"})},_renderRerunButton:function(){var a=this.model.get("creating_job");return this.model.get("rerunnable")?e({title:h("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(b){b.preventDefault();var c=new g.View({job_id:a});c.deferred.execute(function(){Galaxy.app.display(c.$el)})}}):void 0},_renderVisualizationsButton:function(){var a=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||_.isEmpty(a))return null;if(!_.isObject(a[0]))return this.warn("Visualizations have been switched off"),null;var b=$(this.templates.visualizations(a,this));return b.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(b.find(".visualization-link").addBack(".visualization-link")),b},_addScratchBookFn:function(a){a.click(function(a){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:"Visualization",type:"url",content:$(this).attr("href")}),a.preventDefault(),a.stopPropagation())})},_renderTags:function(a){if(this.hasUser){var b=this;this.tagsEditor=new c.TagsEditor({model:this.model,el:a.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.tagsEditorShown=!0},onhide:function(){b.tagsEditorShown=!1},$activator:e({title:h("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(a.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(a){if(this.hasUser){var b=this;this.annotationEditor=new d.AnnotationEditor({model:this.model,el:a.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){b.annotationEditorShown=!0},onhide:function(){b.annotationEditorShown=!1},$activator:e({title:h("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(a.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(a){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var b=$('?').attr("href",this.model.urls.edit).attr("target",this.linkTarget);a.find(".dbkey .value").replaceWith(b)}},events:_.extend(_.clone(i.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(a){this.trigger("edit",this,a)},"click .delete-btn":function(a){this.trigger("delete",this,a)},"click .rerun-btn":function(a){this.trigger("rerun",this,a)},"click .report-err-btn":function(a){this.trigger("report-err",this,a)},"click .visualization-btn":function(a){this.trigger("visualize",this,a)},"click .dbkey a":function(a){this.trigger("edit",this,a)}}),_clickUndeleteLink:function(){return this.model.undelete(),!1},_clickPurgeLink:function(){return this.model.purge(),!1},toString:function(){var a=this.model?this.model+"":"(no model)";return"HDAEditView("+a+")"}});return j.prototype.templates=function(){var a=_.extend({},i.prototype.templates.warnings,{failed_metadata:f.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','
',h("An error occurred setting the metadata for this dataset"),'
',h("Set it manually or retry auto-detection"),"","
","<% } %>"],"dataset"),deleted:f.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'
',h("This dataset has been deleted"),'
',h("Undelete it"),"","<% if( view.purgeAllowed ){ %>",'
',h("Permanently remove it from disk"),"","<% } %>","
","<% } %>"],"dataset")}),b=f.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'">','',"","<% } else { %>",'
','','',"",'","
","<% } %>"],"visualizations");return _.extend({},i.prototype.templates,{warnings:a,visualizations:b})}(),{DatasetListItemEdit:j}}); //# sourceMappingURL=../../../maps/mvc/dataset/dataset-li-edit.js.map \ No newline at end of file diff --git a/static/scripts/mvc/dataset/dataset-li.js b/static/scripts/mvc/dataset/dataset-li.js index 8ad909e596e..8f263e4b075 100644 --- a/static/scripts/mvc/dataset/dataset-li.js +++ b/static/scripts/mvc/dataset/dataset-li.js @@ -1,2 +1,2 @@ -define(["mvc/list/list-item","mvc/dataset/states","ui/fa-icon-button","mvc/base-mvc","utils/localization"],function(a,b,c,d,e){var f=a.ListItemView,g=f.extend({className:f.prototype.className+" dataset",id:function(){return["dataset",this.model.get("id")].join("-")},initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log(this+".initialize:",a),f.prototype.initialize.call(this,a),this.linkTarget=a.linkTarget||"_blank"},_setUpListeners:function(){f.prototype._setUpListeners.call(this),this.model.on("change",function(){this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()?this.model.fetch():this.render()},this)},_fetchModelDetails:function(){var a=this;return a.model.inReadyState()&&!a.model.hasDetails()?a.model.fetch({silent:!0}):a.model.has("rerunnable")?jQuery.when():a.model.fetch({silent:!0,data:{keys:["rerunnable","creating_job"].join(",")}})},remove:function(a,b){var c=this;a=a||this.fxSpeed,this.$el.fadeOut(a,function(){Backbone.View.prototype.remove.call(c),b&&b.call(c)})},render:function(a){return f.prototype.render.call(this,a)},_swapNewRender:function(a){return f.prototype._swapNewRender.call(this,a),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var a=this.model.get("state");if(a===b.NOT_VIEWABLE||a===b.DISCARDED||!this.model.get("accessible"))return null;var d={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))d.disabled=!0,d.title=e("Cannot display datasets removed from disk");else if(a===b.UPLOAD)d.disabled=!0,d.title=e("This dataset must finish uploading before it can be viewed");else if(a===b.NEW)d.disabled=!0,d.title=e("This dataset is not yet viewable");else{d.title=e("View data"),d.href=this.model.urls.display;var f=this;d.onclick=function(a){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add_dataset(f.model.get("id")),a.preventDefault())}}return d.faIcon="fa-eye",c(d)},_renderDetails:function(){if(this.model.get("state")===b.NOT_VIEWABLE)return $(this.templates.noAccess(this.model.toJSON(),this));var a=f.prototype._renderDetails.call(this);return a.find(".actions .left").empty().append(this._renderSecondaryActions()),a.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),a.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(a),a},_renderSummary:function(){var a=this.model.toJSON(),b=this.templates.summaries[a.state];return(b=b||this.templates.summaries.unknown)(a,this)},_renderDetailMessages:function(){var a=this,b=$('
'),c=a.model.toJSON();return _.each(a.templates.detailMessages,function(d){b.append($(d(c,a)))}),b},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case b.NOT_VIEWABLE:return[];case b.OK:case b.FAILED_METADATA:case b.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return c({title:e("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle"})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:_.isEmpty(this.model.get("meta_files"))?$(['','',""].join("")):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var a=this.model.urls;return $(['
','','',"",'","
"].join("\n"))},events:_.extend(_.clone(f.prototype.events),{"click .display-btn":function(a){this.trigger("display",this,a)},"click .params-btn":function(a){this.trigger("params",this,a)},"click .download-btn":function(a){this.trigger("download",this,a)}}),toString:function(){var a=this.model?this.model+"":"(no model)";return"DatasetListItemView("+a+")"}});return g.prototype.templates=function(){var a=_.extend({},f.prototype.templates.warnings,{failed_metadata:d.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','
',e("An error occurred setting the metadata for this dataset"),"
","<% } %>"]),error:d.wrapTemplate(["<% if( model.error ){ %>",'
',e("There was an error getting the data for this dataset"),": <%- model.error %>","
","<% } %>"]),purged:d.wrapTemplate(["<% if( model.purged ){ %>",'
',e("This dataset has been deleted and removed from disk"),"
","<% } %>"]),deleted:d.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'
',e("This dataset has been deleted"),"
","<% } %>"])}),c=d.wrapTemplate(['
','
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','
','
',"
","<% if( !dataset.deleted && !dataset.purged ){ %>",'
','
','
',"<% if( dataset.peek ){ %>",'
<%= dataset.peek %>
',"<% } %>","<% } %>","
"],"dataset"),g=d.wrapTemplate(['
','
',e("You do not have permission to view this dataset"),"
","
"],"dataset"),h={};h[b.OK]=h[b.FAILED_METADATA]=d.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'
','<%- dataset.misc_blurb %>',"
","<% } %>","<% if( dataset.file_ext ){ %>",'
','",'<%- dataset.file_ext %>',"
","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'
','",'',"<%- dataset.metadata_dbkey %>","","
","<% } %>","<% if( dataset.misc_info ){ %>",'
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","<% } %>"],"dataset"),h[b.NEW]=d.wrapTemplate(["
",e("This is a new dataset and not all of its data are available yet"),"
"],"dataset"),h[b.NOT_VIEWABLE]=d.wrapTemplate(["
",e("You do not have permission to view this dataset"),"
"],"dataset"),h[b.DISCARDED]=d.wrapTemplate(["
",e("The job creating this dataset was cancelled before completion"),"
"],"dataset"),h[b.QUEUED]=d.wrapTemplate(["
",e("This job is waiting to run"),"
"],"dataset"),h[b.RUNNING]=d.wrapTemplate(["
",e("This job is currently running"),"
"],"dataset"),h[b.UPLOAD]=d.wrapTemplate(["
",e("This dataset is currently uploading"),"
"],"dataset"),h[b.SETTING_METADATA]=d.wrapTemplate(["
",e("Metadata is being auto-detected"),"
"],"dataset"),h[b.PAUSED]=d.wrapTemplate(["
",e('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"
"],"dataset"),h[b.ERROR]=d.wrapTemplate(["<% if( !dataset.purged ){ %>","
<%- dataset.misc_blurb %>
","<% } %>",'',e("An error occurred with this dataset"),":",'
<%- dataset.misc_info %>
'],"dataset"),h[b.EMPTY]=d.wrapTemplate(["
",e("No data"),": <%- dataset.misc_blurb %>
"],"dataset"),h.unknown=d.wrapTemplate(['
Error: unknown dataset state: "<%- dataset.state %>"
'],"dataset");var i={resubmitted:d.wrapTemplate(["<% if( model.resubmitted ){ %>",'
',e("The job creating this dataset has been resubmitted"),"
","<% } %>"])},j=d.wrapTemplate(["<% _.each( apps, function( app ){ %>",'
','<%- app.label %> ','',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>","","
","<% }); %>"],"apps");return _.extend({},f.prototype.templates,{warnings:a,details:c,noAccess:g,summaries:h,detailMessages:i,displayApplications:j})}(),{DatasetListItemView:g}}); +define(["mvc/list/list-item","mvc/dataset/states","ui/fa-icon-button","mvc/base-mvc","utils/localization"],function(a,b,c,d,e){var f=a.ListItemView,g=f.extend({className:f.prototype.className+" dataset",id:function(){return["dataset",this.model.get("id")].join("-")},initialize:function(a){a.logger&&(this.logger=this.model.logger=a.logger),this.log(this+".initialize:",a),f.prototype.initialize.call(this,a),this.linkTarget=a.linkTarget||"_blank"},_setUpListeners:function(){f.prototype._setUpListeners.call(this),this.model.on("change",function(){this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()?this.model.fetch():this.render()},this)},_fetchModelDetails:function(){var a=this;return a.model.inReadyState()&&!a.model.hasDetails()?a.model.fetch({silent:!0}):jQuery.when()},remove:function(a,b){var c=this;a=a||this.fxSpeed,this.$el.fadeOut(a,function(){Backbone.View.prototype.remove.call(c),b&&b.call(c)})},render:function(a){return f.prototype.render.call(this,a)},_swapNewRender:function(a){return f.prototype._swapNewRender.call(this,a),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var a=this.model.get("state");if(a===b.NOT_VIEWABLE||a===b.DISCARDED||!this.model.get("accessible"))return null;var d={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))d.disabled=!0,d.title=e("Cannot display datasets removed from disk");else if(a===b.UPLOAD)d.disabled=!0,d.title=e("This dataset must finish uploading before it can be viewed");else if(a===b.NEW)d.disabled=!0,d.title=e("This dataset is not yet viewable");else{d.title=e("View data"),d.href=this.model.urls.display;var f=this;d.onclick=function(a){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add_dataset(f.model.get("id")),a.preventDefault())}}return d.faIcon="fa-eye",c(d)},_renderDetails:function(){if(this.model.get("state")===b.NOT_VIEWABLE)return $(this.templates.noAccess(this.model.toJSON(),this));var a=f.prototype._renderDetails.call(this);return a.find(".actions .left").empty().append(this._renderSecondaryActions()),a.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),a.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(a),a},_renderSummary:function(){var a=this.model.toJSON(),b=this.templates.summaries[a.state];return(b=b||this.templates.summaries.unknown)(a,this)},_renderDetailMessages:function(){var a=this,b=$('
'),c=a.model.toJSON();return _.each(a.templates.detailMessages,function(d){b.append($(d(c,a)))}),b},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case b.NOT_VIEWABLE:return[];case b.OK:case b.FAILED_METADATA:case b.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return c({title:e("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle"})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:_.isEmpty(this.model.get("meta_files"))?$(['','',""].join("")):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var a=this.model.urls;return $(['
','','',"",'","
"].join("\n"))},events:_.extend(_.clone(f.prototype.events),{"click .display-btn":function(a){this.trigger("display",this,a)},"click .params-btn":function(a){this.trigger("params",this,a)},"click .download-btn":function(a){this.trigger("download",this,a)}}),toString:function(){var a=this.model?this.model+"":"(no model)";return"DatasetListItemView("+a+")"}});return g.prototype.templates=function(){var a=_.extend({},f.prototype.templates.warnings,{failed_metadata:d.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','
',e("An error occurred setting the metadata for this dataset"),"
","<% } %>"]),error:d.wrapTemplate(["<% if( model.error ){ %>",'
',e("There was an error getting the data for this dataset"),": <%- model.error %>","
","<% } %>"]),purged:d.wrapTemplate(["<% if( model.purged ){ %>",'
',e("This dataset has been deleted and removed from disk"),"
","<% } %>"]),deleted:d.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'
',e("This dataset has been deleted"),"
","<% } %>"])}),c=d.wrapTemplate(['
','
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','
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',"
","<% if( !dataset.deleted && !dataset.purged ){ %>",'
','
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',"<% if( dataset.peek ){ %>",'
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',"<% } %>","<% } %>","
"],"dataset"),g=d.wrapTemplate(['
','
',e("You do not have permission to view this dataset"),"
","
"],"dataset"),h={};h[b.OK]=h[b.FAILED_METADATA]=d.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'
','<%- dataset.misc_blurb %>',"
","<% } %>","<% if( dataset.file_ext ){ %>",'
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","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'
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",e("This job is currently running"),"
"],"dataset"),h[b.UPLOAD]=d.wrapTemplate(["
",e("This dataset is currently uploading"),"
"],"dataset"),h[b.SETTING_METADATA]=d.wrapTemplate(["
",e("Metadata is being auto-detected"),"
"],"dataset"),h[b.PAUSED]=d.wrapTemplate(["
",e('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"
"],"dataset"),h[b.ERROR]=d.wrapTemplate(["<% if( !dataset.purged ){ %>","
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'],"dataset"),h[b.EMPTY]=d.wrapTemplate(["
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"],"dataset"),h.unknown=d.wrapTemplate(['
Error: unknown dataset state: "<%- dataset.state %>"
'],"dataset");var i={resubmitted:d.wrapTemplate(["<% if( model.resubmitted ){ %>",'
',e("The job creating this dataset has been resubmitted"),"
","<% } %>"])},j=d.wrapTemplate(["<% _.each( apps, function( app ){ %>",'
','<%- app.label %> ','',"<% _.each( app.links, function( link ){ %>",'',"<% print( _l( link.text ) ); %>"," ","<% }); %>","","
","<% }); %>"],"apps");return _.extend({},f.prototype.templates,{warnings:a,details:c,noAccess:g,summaries:h,detailMessages:i,displayApplications:j})}(),{DatasetListItemView:g}}); //# sourceMappingURL=../../../maps/mvc/dataset/dataset-li.js.map \ No newline at end of file diff --git a/static/scripts/mvc/history/hdca-li.js b/static/scripts/mvc/history/hdca-li.js index 05eb43b6674..3c332062eb7 100644 --- a/static/scripts/mvc/history/hdca-li.js +++ b/static/scripts/mvc/history/hdca-li.js @@ -1,2 +1,2 @@ -define(["mvc/dataset/states","mvc/collection/collection-li","mvc/collection/collection-panel","mvc/base-mvc","utils/localization"],function(a,b,c,d,e){var f=b.DCListItemView,g=f.extend({className:f.prototype.className+" history-content",_setUpListeners:function(){f.prototype._setUpListeners.call(this),this.model.on("change",function(){this.render()},this)},_getFoldoutPanelClass:function(){switch(this.model.get("collection_type")){case"list":return c.ListCollectionPanel;case"paired":return c.PairCollectionPanel;case"list:paired":return c.ListOfPairsCollectionPanel}throw new TypeError("Uknown collection_type: "+this.model.get("collection_type"))},_swapNewRender:function(b){f.prototype._swapNewRender.call(this,b);var c=this.model.get("populated")?a.OK:a.RUNNING;return this.$el.addClass("state-"+c),this.$el},toString:function(){var a=this.model?this.model+"":"(no model)";return"HDCAListItemView("+a+")"}});return g.prototype.templates=function(){var a=_.extend({},f.prototype.templates.warnings,{hidden:d.wrapTemplate(["<% if( !collection.visible ){ %>",'
',e("This collection has been hidden"),"
","<% } %>"],"collection")}),b=d.wrapTemplate(['
','','
','<%- collection.hid %> ','<%- collection.name %>',"
",'
',"
"],"collection");return _.extend({},f.prototype.templates,{warnings:a,titleBar:b})}(),{HDCAListItemView:g}}); +define(["mvc/dataset/states","mvc/collection/collection-li","mvc/collection/collection-panel","mvc/base-mvc","utils/localization"],function(a,b,c,d,e){var f=b.DCListItemView,g=f.extend({className:f.prototype.className+" history-content",_setUpListeners:function(){f.prototype._setUpListeners.call(this),this.model.on({"change:populated change:visible":function(){this.render()}},this)},_getFoldoutPanelClass:function(){switch(this.model.get("collection_type")){case"list":return c.ListCollectionPanel;case"paired":return c.PairCollectionPanel;case"list:paired":return c.ListOfPairsCollectionPanel}throw new TypeError("Uknown collection_type: "+this.model.get("collection_type"))},_swapNewRender:function(b){f.prototype._swapNewRender.call(this,b);var c=this.model.get("populated")?a.OK:a.RUNNING;return this.$el.addClass("state-"+c),this.$el},toString:function(){var a=this.model?this.model+"":"(no model)";return"HDCAListItemView("+a+")"}});return g.prototype.templates=function(){var a=_.extend({},f.prototype.templates.warnings,{hidden:d.wrapTemplate(["<% if( !collection.visible ){ %>",'
',e("This collection has been hidden"),"
","<% } %>"],"collection")}),b=d.wrapTemplate(['
','','
','<%- collection.hid %> ','<%- collection.name %>',"
",'
',"
"],"collection");return _.extend({},f.prototype.templates,{warnings:a,titleBar:b})}(),{HDCAListItemView:g}}); //# sourceMappingURL=../../../maps/mvc/history/hdca-li.js.map \ No newline at end of file