From 28ccd18f7d43d41ba327107b92739b35d499eb16 Mon Sep 17 00:00:00 2001
From: Anton Nekrutenko <anton@bx.psu.edu>
Date: Mon, 14 Sep 2009 15:27:55 -0400
Subject: [PATCH] Modifications for fastq splitted help

---
 tool_conf.xml.sample                     | 1 +
 tools/metag_tools/split_paired_reads.xml | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/tool_conf.xml.sample b/tool_conf.xml.sample
index 7cd9ece8f4b..7050298a72e 100644
--- a/tool_conf.xml.sample
+++ b/tool_conf.xml.sample
@@ -338,6 +338,7 @@
    <tool file="visualization/genetrack.xml" />
   </section>
   <section name="SAM Tools" id="samtools">
+   <tool file="samtools/sam_bitwise_flag_filter.xml" />
    <tool file="samtools/sam_to_bam.xml" />
    <tool file="samtools/sam_merge.xml" />
    <tool file="samtools/sam_pileup.xml" />
diff --git a/tools/metag_tools/split_paired_reads.xml b/tools/metag_tools/split_paired_reads.xml
index f5c944c2bff..50ee2187a06 100644
--- a/tools/metag_tools/split_paired_reads.xml
+++ b/tools/metag_tools/split_paired_reads.xml
@@ -20,7 +20,7 @@
         
 **What it does**
  
-This tool splits a single paired-end file in half and returns two files with each ends.  
+Splits a single fastq datasret representing paired-end run into two datasets (one for each end). This tool works only for datasets where both ends have **the same** length.  
 
 -----