From 6eaa73e37ee5f795d8b96c9abe274403dfa62753 Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Mon, 11 Dec 2017 10:59:19 -0500
Subject: [PATCH 01/15] Swap to vue via node_module; no staging.

---
 client/galaxy/scripts/apps/admin.js              | 2 +-
 client/galaxy/scripts/apps/analysis.js           | 2 +-
 client/galaxy/scripts/mvc/tool/tool-form-base.js | 2 +-
 client/gulpfile.js                               | 3 +--
 client/webpack.config.js                         | 2 +-
 static/scripts/libs/vue.js                       | 1 -
 6 files changed, 5 insertions(+), 7 deletions(-)
 delete mode 100644 static/scripts/libs/vue.js

diff --git a/client/galaxy/scripts/apps/admin.js b/client/galaxy/scripts/apps/admin.js
index 6d6f745e0f4..569dffc330f 100644
--- a/client/galaxy/scripts/apps/admin.js
+++ b/client/galaxy/scripts/apps/admin.js
@@ -10,7 +10,7 @@ import QueryStringParsing from "utils/query-string-parsing";
 import Router from "layout/router";
 import Utils from "utils/utils";
 import Page from "layout/page";
-import Vue from "libs/vue";
+import Vue from "vue";
 import UserAPIKeys from "components/UserAPIKeys.vue";
 
 window.app = function app(options, bootstrapped) {
diff --git a/client/galaxy/scripts/apps/analysis.js b/client/galaxy/scripts/apps/analysis.js
index 08d3d12f16c..2be9e2a39c5 100644
--- a/client/galaxy/scripts/apps/analysis.js
+++ b/client/galaxy/scripts/apps/analysis.js
@@ -22,7 +22,7 @@ import Ui from "mvc/ui/ui-misc";
 import DatasetError from "mvc/dataset/dataset-error";
 import DatasetEditAttributes from "mvc/dataset/dataset-edit-attributes";
 import Citations from "components/Citations.vue";
-import Vue from "libs/vue";
+import Vue from "vue";
 
 /** define the 'Analyze Data'/analysis/main/home page for Galaxy
  *  * has a masthead
diff --git a/client/galaxy/scripts/mvc/tool/tool-form-base.js b/client/galaxy/scripts/mvc/tool/tool-form-base.js
index 1d4a92693f7..058ba302c4e 100644
--- a/client/galaxy/scripts/mvc/tool/tool-form-base.js
+++ b/client/galaxy/scripts/mvc/tool/tool-form-base.js
@@ -7,7 +7,7 @@ import Deferred from "utils/deferred";
 import Ui from "mvc/ui/ui-misc";
 import FormBase from "mvc/form/form-view";
 import Citations from "components/Citations.vue";
-import Vue from "libs/vue";
+import Vue from "vue";
 export default FormBase.extend({
     initialize: function(options) {
         var self = this;
diff --git a/client/gulpfile.js b/client/gulpfile.js
index 06eebf5605a..6dc0d36af96 100644
--- a/client/gulpfile.js
+++ b/client/gulpfile.js
@@ -34,8 +34,7 @@ var paths = {
         'jquery-mousewheel': [ 'jquery.mousewheel.js', 'jquery/jquery.mousewheel.js' ],
         'raven-js': ['dist/raven.js', 'raven.js'],
         'requirejs': [ 'require.js', 'require.js' ],
-        'underscore': [ 'underscore.js', 'underscore.js' ],
-        'vue': [ 'dist/vue.js', 'vue.js' ]
+        'underscore': [ 'underscore.js', 'underscore.js' ]
     },
     libs: ['galaxy/scripts/libs/**/*.js']
 };
diff --git a/client/webpack.config.js b/client/webpack.config.js
index 4d7431bcb03..8b44ab7d12c 100644
--- a/client/webpack.config.js
+++ b/client/webpack.config.js
@@ -25,7 +25,7 @@ var commonLibs = [
     "libs/farbtastic",
     "libs/bootstrap",
     "libs/bootstrap-tour",
-    "libs/vue",
+    "vue",
     // mvc
     "libs/underscore",
     "libs/backbone",
diff --git a/static/scripts/libs/vue.js b/static/scripts/libs/vue.js
deleted file mode 100644
index 77b2ff52d01..00000000000
--- a/static/scripts/libs/vue.js
+++ /dev/null
@@ -1 +0,0 @@
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From 1a6065b0c3ee7178acbf96028672a33ee32bb195 Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Mon, 11 Dec 2017 10:59:45 -0500
Subject: [PATCH 02/15] Remove old bibtex.js cruft.

---
 static/scripts/libs/bibtex.js | 1 -
 1 file changed, 1 deletion(-)
 delete mode 100644 static/scripts/libs/bibtex.js

diff --git a/static/scripts/libs/bibtex.js b/static/scripts/libs/bibtex.js
deleted file mode 100644
index 2e032edd2bc..00000000000
--- a/static/scripts/libs/bibtex.js
+++ /dev/null
@@ -1 +0,0 @@
-function BibtexParser(g){if("string"==typeof g){var r={},e=[],t=BibtexParser.call(r,function(g){e.push(g)});return t.parse(g),{entries:e,errors:t.getErrors()}}if("function"!=typeof g)throw"Invalid parser construction.";return 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r=0;r<g.length;r++)this.processCharacter_(g[r])},this.error_=function(g){this.ERRORS_.push([this.LINE_,this.CHAR_IN_LINE_,this.CHAR_,g])},this.processEntry_=function(){var g=this.DATA_;if(g.Fields)for(var r in g.Fields){for(var e=g.Fields[r],t=0;t<this.CHARCONV_.length;t++){var c=this.CHARCONV_[t][0],i=this.CHARCONV_[t][1];e=e.replace(c,i)}for(var a=(e=e.replace(/[\n\r\t]/g," ").replace(/\s\s+/g," ").replace(/^\s+|\s+$/g,"")).length,h="",t=0;t<a;t++){var s=e[t],n=!1;"\\"==s&&t<a-1?s=e[++t]:"{"!=s&&"}"!=s||(n=!0),n||(h+=s)}g.Fields[r]=h}if("string"==g.ObjectType)for(var r in g.Fields)this.MACROS_[r]=g.Fields[r];else this.CALLBACK_(g)},this.processCharacter_=function(g){if(this.CHAR_++,this.CHAR_IN_LINE_++,"\n"==g&&(this.LINE_++,this.CHAR_IN_LINE_=1),this.SKIPTILLEOL_)"\n"==g&&(this.SKIPTILLEOL_=!1);else if(this.SKIPCOMMENT_&&"%"==g)this.SKIPTILLEOL_=!0;else if(!this.SKIPWS_||!/\s/.test(g)){this.SKIPWS_=!1,this.SKIPCOMMENT_=!1,this.SKIPTILLEOL_=!1;for(var 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/g,"⪕"],[/\\eqslantgtr /g,"⪖"],[/\\Pisymbol\{ppi020\}\{117\}/g,"⪝"],[/\\Pisymbol\{ppi020\}\{105\}/g,"⪞"],[/\\NestedLessLess /g,"⪡"],[/\\NotNestedLessLess /g,"⪡-00338"],[/\\NestedGreaterGreater /g,"⪢"],[/\\NotNestedGreaterGreater /g,"⪢-00338"],[/\\preceq /g,"⪯"],[/\\not\\preceq /g,"⪯-00338"],[/\\succeq /g,"⪰"],[/\\not\\succeq /g,"⪰-00338"],[/\\precneqq /g,"⪵"],[/\\succneqq /g,"⪶"],[/\\precapprox /g,"⪷"],[/\\succapprox /g,"⪸"],[/\\precnapprox /g,"⪹"],[/\\succnapprox /g,"⪺"],[/\\subseteqq /g,"⫅"],[/\\nsubseteqq /g,"⫅-00338"],[/\\supseteqq /g,"⫆"],[/\\nsupseteqq/g,"⫆-00338"],[/\\subsetneqq /g,"⫋"],[/\\supsetneqq /g,"⫌"],[/\\ElsevierGlyph\{E30D\}/g,"⫫"],[/\\Elztdcol /g,"⫶"],[/\\ElsevierGlyph\{300A\}/g,"《"],[/\\ElsevierGlyph\{300B\}/g,"》"],[/\\ElsevierGlyph\{3018\}/g,"〘"],[/\\ElsevierGlyph\{3019\}/g,"〙"],[/\\openbracketleft /g,"〚"],[/\\openbracketright /g,"〛"]],this}"undefined"!=typeof module&&module.exports&&(module.exports=BibtexParser);
\ No newline at end of file

From 662f35df490c66c2d9443f9815820c2041ee7fdd Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Mon, 11 Dec 2017 11:08:06 -0500
Subject: [PATCH 03/15] Upgrade vue.

---
 client/package.json | 2 +-
 client/yarn.lock    | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/client/package.json b/client/package.json
index efac95cbb96..9aa46a638dc 100644
--- a/client/package.json
+++ b/client/package.json
@@ -28,7 +28,7 @@
     "raven-js": "^3.17.0",
     "requirejs": "2",
     "underscore": "^1.8.3",
-    "vue": "^2.5.3"
+    "vue": "^2.5.9"
   },
   "scripts": {
     "watch": "gulp stage-libs && concurrently \"yarn run webpack-watch\" \"yarn run gulp watch\" \"yarn run style-watch\"",
diff --git a/client/yarn.lock b/client/yarn.lock
index f206aa1f837..0a2d0f11772 100644
--- a/client/yarn.lock
+++ b/client/yarn.lock
@@ -7506,9 +7506,9 @@ vue-template-es2015-compiler@^1.6.0:
   version "1.6.0"
   resolved "https://registry.yarnpkg.com/vue-template-es2015-compiler/-/vue-template-es2015-compiler-1.6.0.tgz#dc42697133302ce3017524356a6c61b7b69b4a18"
 
-vue@^2.5.3:
-  version "2.5.3"
-  resolved "https://registry.yarnpkg.com/vue/-/vue-2.5.3.tgz#e1a3b1f49b6e93e574ce040b95cbc873912fecc1"
+vue@^2.5.9:
+  version "2.5.9"
+  resolved "https://registry.yarnpkg.com/vue/-/vue-2.5.9.tgz#b2380cd040915dca69881dafd121d760952e65f7"
 
 walk-sync@0.3.1:
   version "0.3.1"

From 2ca7b90262a6ef5e833df0c65da4c3a5a45a6d9b Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Mon, 11 Dec 2017 11:08:59 -0500
Subject: [PATCH 04/15] Upgrade webpack to 3.10

---
 client/package.json | 2 +-
 client/yarn.lock    | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/client/package.json b/client/package.json
index 9aa46a638dc..5ae13c6046e 100644
--- a/client/package.json
+++ b/client/package.json
@@ -92,6 +92,6 @@
     "sinon": "^4.1.2",
     "vue-loader": "^13.5.0",
     "vue-template-compiler": "^2.5.3",
-    "webpack": "^3.6.0"
+    "webpack": "^3.10.0"
   }
 }
diff --git a/client/yarn.lock b/client/yarn.lock
index 0a2d0f11772..c77bda4ccda 100644
--- a/client/yarn.lock
+++ b/client/yarn.lock
@@ -7577,9 +7577,9 @@ webpack@^1.14.0:
     watchpack "^0.2.1"
     webpack-core "~0.6.9"
 
-webpack@^3.6.0:
-  version "3.7.0"
-  resolved "https://registry.yarnpkg.com/webpack/-/webpack-3.7.0.tgz#9081d0b1ba4950e34ddc54195721eba4bf205e83"
+webpack@^3.10.0:
+  version "3.10.0"
+  resolved "https://registry.yarnpkg.com/webpack/-/webpack-3.10.0.tgz#5291b875078cf2abf42bdd23afe3f8f96c17d725"
   dependencies:
     acorn "^5.0.0"
     acorn-dynamic-import "^2.0.0"

From 0a92f5b80bea2b593a9d37ab9d606e5ac97c2e71 Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Mon, 11 Dec 2017 11:09:35 -0500
Subject: [PATCH 05/15] Update vue-template-compiler

---
 client/package.json | 2 +-
 client/yarn.lock    | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/client/package.json b/client/package.json
index 5ae13c6046e..db42110377d 100644
--- a/client/package.json
+++ b/client/package.json
@@ -91,7 +91,7 @@
     "qunitjs": "^2.4.1",
     "sinon": "^4.1.2",
     "vue-loader": "^13.5.0",
-    "vue-template-compiler": "^2.5.3",
+    "vue-template-compiler": "^2.5.9",
     "webpack": "^3.10.0"
   }
 }
diff --git a/client/yarn.lock b/client/yarn.lock
index c77bda4ccda..59127c3f7ec 100644
--- a/client/yarn.lock
+++ b/client/yarn.lock
@@ -7495,9 +7495,9 @@ vue-style-loader@^3.0.0:
     hash-sum "^1.0.2"
     loader-utils "^1.0.2"
 
-vue-template-compiler@^2.5.3:
-  version "2.5.3"
-  resolved "https://registry.yarnpkg.com/vue-template-compiler/-/vue-template-compiler-2.5.3.tgz#ab631b0694e211a6aaf0d800102b37836aae36a4"
+vue-template-compiler@^2.5.9:
+  version "2.5.9"
+  resolved "https://registry.yarnpkg.com/vue-template-compiler/-/vue-template-compiler-2.5.9.tgz#7fabc73c8d3d12d32340cd86c5fc33e00e86d686"
   dependencies:
     de-indent "^1.0.2"
     he "^1.1.0"

From 8cd62168d8eda3e5480ffcfb25e87c62b44163c6 Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Mon, 11 Dec 2017 11:14:39 -0500
Subject: [PATCH 06/15] Upgrade minor devDependencies.

---
 client/package.json |  6 +++---
 client/yarn.lock    | 18 +++++++++---------
 2 files changed, 12 insertions(+), 12 deletions(-)

diff --git a/client/package.json b/client/package.json
index db42110377d..2e89faf101c 100644
--- a/client/package.json
+++ b/client/package.json
@@ -55,11 +55,11 @@
   "devDependencies": {
     "babel-core": "^6.24.0",
     "babel-loader": "^7.1.1",
-    "babel-preset-env": "^1.3.2",
-    "concurrently": "^3.4.0",
+    "babel-preset-env": "^1.6.1",
+    "concurrently": "^3.5.1",
     "css-loader": "^0.28.7",
     "del": "^3.0.0",
-    "expose-loader": "^0.7.3",
+    "expose-loader": "^0.7.4",
     "grunt": "^0.4.5",
     "grunt-bower-install-simple": "^1.1.0",
     "grunt-cli": "^0.1.13",
diff --git a/client/yarn.lock b/client/yarn.lock
index 59127c3f7ec..d8c0f31d0ef 100644
--- a/client/yarn.lock
+++ b/client/yarn.lock
@@ -887,9 +887,9 @@ babel-plugin-transform-strict-mode@^6.24.1:
     babel-runtime "^6.22.0"
     babel-types "^6.24.1"
 
-babel-preset-env@^1.3.2:
-  version "1.6.0"
-  resolved "https://registry.yarnpkg.com/babel-preset-env/-/babel-preset-env-1.6.0.tgz#2de1c782a780a0a5d605d199c957596da43c44e4"
+babel-preset-env@^1.6.1:
+  version "1.6.1"
+  resolved "https://registry.yarnpkg.com/babel-preset-env/-/babel-preset-env-1.6.1.tgz#a18b564cc9b9afdf4aae57ae3c1b0d99188e6f48"
   dependencies:
     babel-plugin-check-es2015-constants "^6.22.0"
     babel-plugin-syntax-trailing-function-commas "^6.22.0"
@@ -1659,9 +1659,9 @@ concat-stream@~1.4.6:
     readable-stream "~1.1.9"
     typedarray "~0.0.5"
 
-concurrently@^3.4.0:
-  version "3.5.0"
-  resolved "https://registry.yarnpkg.com/concurrently/-/concurrently-3.5.0.tgz#8cf1b7707a6916a78a4ff5b77bb04dec54b379b2"
+concurrently@^3.5.1:
+  version "3.5.1"
+  resolved "https://registry.yarnpkg.com/concurrently/-/concurrently-3.5.1.tgz#ee8b60018bbe86b02df13e5249453c6ececd2521"
   dependencies:
     chalk "0.5.1"
     commander "2.6.0"
@@ -2616,9 +2616,9 @@ expand-tilde@^2.0.2:
   dependencies:
     homedir-polyfill "^1.0.1"
 
-expose-loader@^0.7.3:
-  version "0.7.3"
-  resolved "https://registry.yarnpkg.com/expose-loader/-/expose-loader-0.7.3.tgz#35fbd3659789e4faa81f59de8b7e9fc39e466d51"
+expose-loader@^0.7.4:
+  version "0.7.4"
+  resolved "https://registry.yarnpkg.com/expose-loader/-/expose-loader-0.7.4.tgz#9bcdd3878b5da9107930b55a03f65afe90b3314a"
 
 extend@^3.0.0, extend@~3.0.0, extend@~3.0.1:
   version "3.0.1"

From 4dbe7c420e6f6c1515183bf44838a4f2ed3fa453 Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Mon, 11 Dec 2017 11:16:14 -0500
Subject: [PATCH 07/15] Upgrade prettier 1.7->1.9

---
 client/package.json | 2 +-
 client/yarn.lock    | 6 +++++-
 2 files changed, 6 insertions(+), 2 deletions(-)

diff --git a/client/package.json b/client/package.json
index 2e89faf101c..6c175c0423f 100644
--- a/client/package.json
+++ b/client/package.json
@@ -87,7 +87,7 @@
     "karma-webpack": "^2.0.6",
     "phantomjs-polyfill": "0.0.2",
     "phantomjs-prebuilt": "^2.1.7",
-    "prettier": "^1.7.4",
+    "prettier": "^1.9.1",
     "qunitjs": "^2.4.1",
     "sinon": "^4.1.2",
     "vue-loader": "^13.5.0",
diff --git a/client/yarn.lock b/client/yarn.lock
index d8c0f31d0ef..1550f2e6acc 100644
--- a/client/yarn.lock
+++ b/client/yarn.lock
@@ -5894,10 +5894,14 @@ preserve@^0.2.0:
   version "0.2.0"
   resolved "https://registry.yarnpkg.com/preserve/-/preserve-0.2.0.tgz#815ed1f6ebc65926f865b310c0713bcb3315ce4b"
 
-prettier@^1.7.0, prettier@^1.7.4:
+prettier@^1.7.0:
   version "1.8.2"
   resolved "https://registry.yarnpkg.com/prettier/-/prettier-1.8.2.tgz#bff83e7fd573933c607875e5ba3abbdffb96aeb8"
 
+prettier@^1.9.1:
+  version "1.9.1"
+  resolved "https://registry.yarnpkg.com/prettier/-/prettier-1.9.1.tgz#41638a0d47c1efbd1b7d5a742aaa5548eab86d70"
+
 pretty-bytes@^1.0.0:
   version "1.0.4"
   resolved "https://registry.yarnpkg.com/pretty-bytes/-/pretty-bytes-1.0.4.tgz#0a22e8210609ad35542f8c8d5d2159aff0751c84"

From a363d81b7314bd41fba5ea15b2ff432a9bc83dad Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Mon, 11 Dec 2017 11:17:45 -0500
Subject: [PATCH 08/15] Rerun new version of prettier.

---
 .../galaxy.interactive_environments.js        |  8 +---
 client/galaxy/scripts/galaxy.pages.js         |  6 +--
 client/galaxy/scripts/layout/modal.js         |  6 +--
 .../galaxy/scripts/mvc/grid/grid-template.js  | 46 +++++--------------
 client/galaxy/scripts/mvc/history/hdca-li.js  |  4 +-
 .../mvc/library/library-foldertoolbar-view.js | 20 ++++----
 .../mvc/library/library-library-view.js       |  6 +--
 client/galaxy/scripts/mvc/tool/tool-form.js   |  4 +-
 .../scripts/mvc/workflow/workflow-canvas.js   |  5 +-
 .../scripts/mvc/workflow/workflow-manager.js  |  4 +-
 .../scripts/mvc/workflow/workflow-view.js     |  8 +---
 .../galaxy/scripts/mvc/workflow/workflow.js   |  8 +---
 12 files changed, 38 insertions(+), 87 deletions(-)

diff --git a/client/galaxy/scripts/galaxy.interactive_environments.js b/client/galaxy/scripts/galaxy.interactive_environments.js
index 19f41e02f54..e17b3a62835 100644
--- a/client/galaxy/scripts/galaxy.interactive_environments.js
+++ b/client/galaxy/scripts/galaxy.interactive_environments.js
@@ -6,9 +6,7 @@
 export function append_notebook(url) {
     clear_main_area();
     $("#main").append(
-        `<iframe frameBorder="0" seamless="seamless" style="width: 100%; height: 100%; overflow:hidden;" scrolling="no" src="${
-            url
-        }"></iframe>`
+        `<iframe frameBorder="0" seamless="seamless" style="width: 100%; height: 100%; overflow:hidden;" scrolling="no" src="${url}"></iframe>`
     );
 }
 
@@ -21,9 +19,7 @@ export function clear_main_area() {
 
 export function display_spinner() {
     $("#main").append(
-        `<img id="spinner" src="${
-            galaxy_root
-        }static/style/largespinner.gif" style="position:absolute;margin:auto;top:0;left:0;right:0;bottom:0;">`
+        `<img id="spinner" src="${galaxy_root}static/style/largespinner.gif" style="position:absolute;margin:auto;top:0;left:0;right:0;bottom:0;">`
     );
 }
 
diff --git a/client/galaxy/scripts/galaxy.pages.js b/client/galaxy/scripts/galaxy.pages.js
index 9d16e88e5dd..ed673e70037 100644
--- a/client/galaxy/scripts/galaxy.pages.js
+++ b/client/galaxy/scripts/galaxy.pages.js
@@ -154,11 +154,7 @@ WYMeditor.editor.prototype.dialog = function(dialogType, dialogFeatures, bodyHtm
         }
         show_modal(
             "Create Link",
-            `<div><div><label id='link_attribute_label'>URL <span style='float: right; font-size: 90%'><a href='#' id='set_link_id'>Create in-page anchor</a></span></label><br><input type='text' class='wym_href' value='${
-                curURL
-            }' size='40' /></div><div><label>Title</label><br><input type='text' class='wym_title' value='${
-                curTitle
-            }' size='40' /></div><div>`,
+            `<div><div><label id='link_attribute_label'>URL <span style='float: right; font-size: 90%'><a href='#' id='set_link_id'>Create in-page anchor</a></span></label><br><input type='text' class='wym_href' value='${curURL}' size='40' /></div><div><label>Title</label><br><input type='text' class='wym_title' value='${curTitle}' size='40' /></div><div>`,
             {
                 "Make link": function() {
                     // Get URL, name/title.
diff --git a/client/galaxy/scripts/layout/modal.js b/client/galaxy/scripts/layout/modal.js
index d359f59fef5..4f8120f29a7 100644
--- a/client/galaxy/scripts/layout/modal.js
+++ b/client/galaxy/scripts/layout/modal.js
@@ -154,9 +154,9 @@ function show_in_overlay(options) {
         closeButton: true,
         title: "&nbsp;",
         body: $(
-            `<div style='margin: -5px;'><iframe style='margin: 0; padding: 0;' src='${options.url}' width='${
-                width
-            }' height='${height}' scrolling='${scroll}' frameborder='0'></iframe></div>`
+            `<div style='margin: -5px;'><iframe style='margin: 0; padding: 0;' src='${
+                options.url
+            }' width='${width}' height='${height}' scrolling='${scroll}' frameborder='0'></iframe></div>`
         )
     });
     modal.show({ backdrop: true });
diff --git a/client/galaxy/scripts/mvc/grid/grid-template.js b/client/galaxy/scripts/mvc/grid/grid-template.js
index 5fafae695b1..5299ab1a87f 100644
--- a/client/galaxy/scripts/mvc/grid/grid-template.js
+++ b/client/galaxy/scripts/mvc/grid/grid-template.js
@@ -180,9 +180,7 @@ export default {
                         if (options.operations.length !== 0) {
                             tmpl += `<div id="${id}" class="${cls}" style="float: left;">`;
                         }
-                        tmpl += `<a class="menubutton-label use-target" target="${target}" href="${
-                            link
-                        }" onclick="return false;">${value}</a>`;
+                        tmpl += `<a class="menubutton-label use-target" target="${target}" href="${link}" onclick="return false;">${value}</a>`;
                         if (options.operations.length !== 0) {
                             tmpl += "</div>";
                         }
@@ -262,21 +260,13 @@ export default {
                 if (page_index == options.cur_page_num) {
                     tmpl += `<span class="page-link inactive-link" id="page-link-${page_index}">${page_index}</span>`;
                 } else {
-                    tmpl += `<span class="page-link" id="page-link-${
-                        page_index
-                    }"><a href="javascript:void(0);" onclick="return false;" page_num="${page_index}">${
-                        page_index
-                    }</a></span>`;
+                    tmpl += `<span class="page-link" id="page-link-${page_index}"><a href="javascript:void(0);" onclick="return false;" page_num="${page_index}">${page_index}</a></span>`;
                 }
             }
 
             // show last page
             if (max_page < num_pages) {
-                tmpl += `...<span class="page-link" id="page-link-${
-                    num_pages
-                }"><a href="javascript:void(0);" onclick="return false;" page_num="${num_pages}">${
-                    num_pages
-                }</a></span>`;
+                tmpl += `...<span class="page-link" id="page-link-${num_pages}"><a href="javascript:void(0);" onclick="return false;" page_num="${num_pages}">${num_pages}</a></span>`;
             }
             tmpl += "</span>";
 
@@ -386,9 +376,7 @@ export default {
         //
         // standard search
         //
-        var tmpl = `<div id="standard-search" style="display: ${
-            standard_search_display
-        };"><table><tr><td style="padding: 0;"><table>`;
+        var tmpl = `<div id="standard-search" style="display: ${standard_search_display};"><table><tr><td style="padding: 0;"><table>`;
 
         // add standard filters
         for (let column of options.columns) {
@@ -411,9 +399,7 @@ export default {
         //
         // advanced search
         //
-        tmpl += `<div id="advanced-search" style="display: ${
-            advanced_search_display
-        }; margin-top: 5px; border: 1px solid #ccc;"><table><tr><td style="text-align: left" colspan="100"><a href="" class="advanced-search-toggle">Close Advanced Search</a></td></tr>`;
+        tmpl += `<div id="advanced-search" style="display: ${advanced_search_display}; margin-top: 5px; border: 1px solid #ccc;"><table><tr><td style="text-align: left" colspan="100"><a href="" class="advanced-search-toggle">Close Advanced Search</a></td></tr>`;
 
         // add advanced filters
         for (let column of options.columns) {
@@ -456,9 +442,9 @@ export default {
                         if (column.is_text) {
                             filter_value = JSON.stringify(filter_value);
                         }
-                        tmpl += `<input type="hidden" id="${column.key}" name="f-${column.key}" value="${
-                            filter_value
-                        }"/>`;
+                        tmpl += `<input type="hidden" id="${column.key}" name="f-${
+                            column.key
+                        }" value="${filter_value}"/>`;
                     }
                 }
             }
@@ -510,9 +496,7 @@ export default {
             // print input field for column
             tmpl += `
                 <span class="search-box">
-                    <input class="search-box-input" id="input-${column_key}-filter" name="f-${
-                column_key
-            }" type="text" placeholder="${value}" size="${size}"/>
+                    <input class="search-box-input" id="input-${column_key}-filter" name="f-${column_key}" type="text" placeholder="${value}" size="${size}"/>
                     <button type="submit" style="background: transparent; border: none; padding: 4px; margin: 0px;">
                         <i class="fa fa-search"></i>
                     </button>
@@ -547,11 +531,7 @@ export default {
                 if (filter && cf[column_key] && filter == cf_arg) {
                     tmpl += `<span class="categorical-filter ${column_key}-filter current-filter">${cf_label}</span>`;
                 } else {
-                    tmpl += `<span class="categorical-filter ${
-                        column_key
-                    }-filter"><a href="javascript:void(0);" filter_key="${cf_key}" filter_val="${cf_arg}">${
-                        cf_label
-                    }</a></span>`;
+                    tmpl += `<span class="categorical-filter ${column_key}-filter"><a href="javascript:void(0);" filter_key="${cf_key}" filter_val="${cf_arg}">${cf_label}</a></span>`;
                 }
             }
             tmpl += "</span>";
@@ -565,10 +545,6 @@ export default {
     // template for filter items
     filter_element: function(filter_key, filter_value) {
         filter_value = Utils.sanitize(filter_value);
-        return `<span class="text-filter-val">${filter_value}<a href="javascript:void(0);" filter_key="${
-            filter_key
-        }" filter_val="${
-            filter_value
-        }"><i class="fa fa-times" style="padding-left: 5px; padding-bottom: 6px;"/></a></span>`;
+        return `<span class="text-filter-val">${filter_value}<a href="javascript:void(0);" filter_key="${filter_key}" filter_val="${filter_value}"><i class="fa fa-times" style="padding-left: 5px; padding-bottom: 6px;"/></a></span>`;
     }
 };
diff --git a/client/galaxy/scripts/mvc/history/hdca-li.js b/client/galaxy/scripts/mvc/history/hdca-li.js
index e9b67a49d4b..f7a89692287 100644
--- a/client/galaxy/scripts/mvc/history/hdca-li.js
+++ b/client/galaxy/scripts/mvc/history/hdca-li.js
@@ -75,9 +75,7 @@ var HDCAListItemView = _super.extend(
             } else if (!jobStatesSummary || !jobStatesSummary.hasDetails()) {
                 return `
                     <div class="progress state-progress">
-                        <span class="note">Loading job data for ${
-                            collectionTypeDescription
-                        }.<span class="blinking">..</span></span>
+                        <span class="note">Loading job data for ${collectionTypeDescription}.<span class="blinking">..</span></span>
                         <div class="progress-bar info" style="width:100%">
                     </div>`;
             } else {
diff --git a/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js b/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
index 113523bcbfe..5e0f92a68bb 100644
--- a/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
+++ b/client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
@@ -910,9 +910,9 @@ var FolderToolbarView = Backbone.View.extend({
         }
         var promise = $.when(
             $.post(
-                `${Galaxy.root}api/libraries/datasets?encoded_folder_id=${that.id}&source=${options.source}&path=${
-                    popped_item
-                }&file_type=${options.file_type}&link_data=${options.link_data}&space_to_tab=${
+                `${Galaxy.root}api/libraries/datasets?encoded_folder_id=${that.id}&source=${
+                    options.source
+                }&path=${popped_item}&file_type=${options.file_type}&link_data=${options.link_data}&space_to_tab=${
                     options.space_to_tab
                 }&to_posix_lines=${options.to_posix_lines}&dbkey=${options.dbkey}&tag_using_filenames=${
                     options.tag_using_filenames
@@ -959,13 +959,13 @@ var FolderToolbarView = Backbone.View.extend({
         }
         var promise = $.when(
             $.post(
-                `${Galaxy.root}api/libraries/datasets?encoded_folder_id=${that.id}&source=${options.source}&path=${
-                    popped_item
-                }&preserve_dirs=${options.preserve_dirs}&link_data=${options.link_data}&to_posix_lines=${
-                    options.to_posix_lines
-                }&space_to_tab=${options.space_to_tab}&file_type=${options.file_type}&dbkey=${
-                    options.dbkey
-                }&tag_using_filenames=${options.tag_using_filenames}`
+                `${Galaxy.root}api/libraries/datasets?encoded_folder_id=${that.id}&source=${
+                    options.source
+                }&path=${popped_item}&preserve_dirs=${options.preserve_dirs}&link_data=${
+                    options.link_data
+                }&to_posix_lines=${options.to_posix_lines}&space_to_tab=${options.space_to_tab}&file_type=${
+                    options.file_type
+                }&dbkey=${options.dbkey}&tag_using_filenames=${options.tag_using_filenames}`
             )
         );
         promise
diff --git a/client/galaxy/scripts/mvc/library/library-library-view.js b/client/galaxy/scripts/mvc/library/library-library-view.js
index 483fc83f8fe..79006bab987 100644
--- a/client/galaxy/scripts/mvc/library/library-library-view.js
+++ b/client/galaxy/scripts/mvc/library/library-library-view.js
@@ -124,9 +124,9 @@ var LibraryView = Backbone.View.extend({
             placeholder: "Click to select a role",
             container: self.$el.find(`#${id}`),
             ajax: {
-                url: `${Galaxy.root}api/libraries/${self.id}/permissions?scope=available&is_library_access=${
-                    is_library_access
-                }`,
+                url: `${Galaxy.root}api/libraries/${
+                    self.id
+                }/permissions?scope=available&is_library_access=${is_library_access}`,
                 dataType: "json",
                 quietMillis: 100,
                 data: function(term, page) {
diff --git a/client/galaxy/scripts/mvc/tool/tool-form.js b/client/galaxy/scripts/mvc/tool/tool-form.js
index 17af52ce046..6e0d5132d3d 100644
--- a/client/galaxy/scripts/mvc/tool/tool-form.js
+++ b/client/galaxy/scripts/mvc/tool/tool-form.js
@@ -269,9 +269,7 @@ var View = Backbone.View.extend({
                 } else if (batch_n !== n) {
                     this.form.highlight(
                         input_id,
-                        `Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>${
-                            n
-                        }</b> selection(s) while a previous field contains <b>${batch_n}</b>.`
+                        `Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>${n}</b> selection(s) while a previous field contains <b>${batch_n}</b>.`
                     );
                     return false;
                 }
diff --git a/client/galaxy/scripts/mvc/workflow/workflow-canvas.js b/client/galaxy/scripts/mvc/workflow/workflow-canvas.js
index eed08cbb3db..33e64640541 100644
--- a/client/galaxy/scripts/mvc/workflow/workflow-canvas.js
+++ b/client/galaxy/scripts/mvc/workflow/workflow-canvas.js
@@ -106,10 +106,7 @@ $.extend(CanvasManager.prototype, {
             // If it appears that the user is trying to copy/paste text, we
             // pass that through.
             if (window.getSelection().toString() === "") {
-                if (
-                    this.app.workflow.active_node &&
-                    this.app.workflow.active_node.type !== "subworkflow"
-                ) {
+                if (this.app.workflow.active_node && this.app.workflow.active_node.type !== "subworkflow") {
                     e.clipboardData.setData(
                         "application/json",
                         JSON.stringify({
diff --git a/client/galaxy/scripts/mvc/workflow/workflow-manager.js b/client/galaxy/scripts/mvc/workflow/workflow-manager.js
index 35b8d79890d..8ea13a65345 100644
--- a/client/galaxy/scripts/mvc/workflow/workflow-manager.js
+++ b/client/galaxy/scripts/mvc/workflow/workflow-manager.js
@@ -35,9 +35,7 @@ $.extend(Workflow.prototype, {
         }
         if (!this.canLabelOutputWith(toLabel)) {
             Toastr.warning(
-                `Workflow contains duplicate workflow output labels ${
-                    toLabel
-                }. This must be fixed before it can be saved.`
+                `Workflow contains duplicate workflow output labels ${toLabel}. This must be fixed before it can be saved.`
             );
         }
         if (toLabel) {
diff --git a/client/galaxy/scripts/mvc/workflow/workflow-view.js b/client/galaxy/scripts/mvc/workflow/workflow-view.js
index 5ec76a86262..d352f0f31c2 100644
--- a/client/galaxy/scripts/mvc/workflow/workflow-view.js
+++ b/client/galaxy/scripts/mvc/workflow/workflow-view.js
@@ -277,9 +277,7 @@ export default Backbone.View.extend({
                 if (upgrade_message) {
                     window.show_modal(
                         "Issues loading this workflow",
-                        `Please review the following issues, possibly resulting from tool upgrades or changes.<p><ul>${
-                            upgrade_message
-                        }</ul></p>`,
+                        `Please review the following issues, possibly resulting from tool upgrades or changes.<p><ul>${upgrade_message}</ul></p>`,
                         { Continue: hide_modal }
                     );
                 } else {
@@ -560,9 +558,7 @@ export default Backbone.View.extend({
                 if (upgrade_message) {
                     window.show_modal(
                         "Subworkflow embedded with changes",
-                        `Problems were encountered loading this workflow (possibly a result of tool upgrades). Please review the following parameters and then save.<ul>${
-                            upgrade_message
-                        }</ul>`,
+                        `Problems were encountered loading this workflow (possibly a result of tool upgrades). Please review the following parameters and then save.<ul>${upgrade_message}</ul>`,
                         { Continue: hide_modal }
                     );
                 } else {
diff --git a/client/galaxy/scripts/mvc/workflow/workflow.js b/client/galaxy/scripts/mvc/workflow/workflow.js
index 22e82bdcf86..d12d992f464 100644
--- a/client/galaxy/scripts/mvc/workflow/workflow.js
+++ b/client/galaxy/scripts/mvc/workflow/workflow.js
@@ -103,9 +103,7 @@ var WorkflowItemView = Backbone.View.extend({
         } value="${wfId}">`;
         var trHtml = `<td><div class="dropdown"><button class="menubutton" type="button" data-toggle="dropdown">${_.escape(
             this.model.get("name")
-        )}<span class="caret"></span></button>${this._templateActions()}</div></td><td><span><div class="${
-            wfId
-        } tags-display"></div></td><td>${
+        )}<span class="caret"></span></button>${this._templateActions()}</div></td><td><span><div class="${wfId} tags-display"></div></td><td>${
             this.model.get("owner") === Galaxy.user.attributes.username ? "You" : this.model.get("owner")
         }</span></td><td>${this.model.get("number_of_steps")}</td><td>${
             this.model.get("published") ? "Yes" : "No"
@@ -323,9 +321,7 @@ var WorkflowListView = Backbone.View.extend({
             "<th>Published</th>" +
             "<th>Show in tools panel</th>" +
             "</tr></thead>";
-        return `${
-            tableHtml
-        }<tbody class="workflow-search "><div class="hidden_description_layer"><p>Drop workflow files here to import</p></tbody></table></div>`;
+        return `${tableHtml}<tbody class="workflow-search "><div class="hidden_description_layer"><p>Drop workflow files here to import</p></tbody></table></div>`;
     },
 
     /** Main template */

From c09643d57bac206bc101434f4623c0d63d75ca16 Mon Sep 17 00:00:00 2001
From: Dannon Baker <dannon.baker@gmail.com>
Date: Mon, 11 Dec 2017 11:18:43 -0500
Subject: [PATCH 09/15] Build client.

---
 static/scripts/bundled/admin.bundled.js    |  2 +-
 static/scripts/bundled/analysis.bundled.js |  2 +-
 static/scripts/bundled/libs.bundled.js     | 18 +++++++++---------
 static/scripts/mvc/tool/tool-form-base.js  |  2 +-
 4 files changed, 12 insertions(+), 12 deletions(-)

diff --git a/static/scripts/bundled/admin.bundled.js b/static/scripts/bundled/admin.bundled.js
index ea683701bb8..536164915bb 100644
--- a/static/scripts/bundled/admin.bundled.js
+++ b/static/scripts/bundled/admin.bundled.js
@@ -1 +1 @@
-webpackJsonp([2],{23:function(e,t,o){"use strict";(function(e){function i(e){return e&&e.__esModule?e:{default:e}}function a(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var o in e)Object.prototype.hasOwnProperty.call(e,o)&&(t[o]=e[o]);return t.default=e,t}function s(e,t){return this._init(e||{},t||{})}Object.defineProperty(t,"__esModule",{value:!0});var n=o(1),r=a(n),l=o(2),u=a(l),d=o(5),c=i(d),p=o(24),g=i(p),f=o(25),_=i(f),h=o(32),m=i(h),y=o(3),v=i(y);(0,m.default)(s,"GalaxyApp");var b="galaxy:debug:namespaces",w=!1;try{w="true"==localStorage.getItem("galaxy:debug")}catch(e){console.log((0,v.default)("localStorage not available for debug flag retrieval"))}s.prototype._init=function(e,t){var o=this;return r.extend(o,u.Events),w&&(o.logger=console,console.debug("debugging galaxy:","options:",e,"bootstrapped:",t)),o._processOptions(e),o.root=e.root||"/",o.params=e.params||{},o.session_csrf_token=e.session_csrf_token||null,o._initConfig(e.config||{}),o._patchGalaxy(window.Galaxy),o._initLogger(o.options.loggerOptions||{}),o.debug("GalaxyApp.options: ",o.options),o.debug("GalaxyApp.config: ",o.config),o.debug("GalaxyApp.logger: ",o.logger),o._initLocale(),o.debug("GalaxyApp.localize: ",o.localize),o.config=e.config||{},o.debug("GalaxyApp.config: ",o.config),o._initUser(e.user||{}),o.debug("GalaxyApp.user: ",o.user),o._setUpListeners(),o.trigger("ready",o),o},s.prototype.defaultOptions={patchExisting:!0,root:"/",session_csrf_token:null},s.prototype._processOptions=function(e){var t=this,o=t.defaultOptions;t.options={};for(var i in o)o.hasOwnProperty(i)&&(t.options[i]=e.hasOwnProperty(i)?e[i]:o[i]);return t},s.prototype._initConfig=function(e){var t=this;return t.config=e,t.config.debug=w||t.config.debug,t},s.prototype._patchGalaxy=function(e){var t=this;if(t.options.patchExisting&&e)for(var o in e)e.hasOwnProperty(o)&&(t[o]=e[o])},s.prototype._initLogger=function(e){var t=this;if(t.config.debug){e.consoleLogger=e.consoleLogger||console,e.consoleLevel=e.consoleLevel||_.default.MetricsLogger.ALL;try{e.consoleNamespaceWhitelist=localStorage.getItem(b).split(",")}catch(e){}try{e.consoleFlattenMessages="true"==localStorage.getItem("galaxy:debug:flatten")}catch(e){}console.log(e.consoleFlattenMessages)}return t.logger=new _.default.MetricsLogger(e),t.emit={},["log","debug","info","warn","error","metric"].map(function(e){t.emit[e]=function(o){t.logger.emit(e,arguments[0],Array.prototype.slice.call(arguments,1))}}),t.config.debug&&(c.default.LoggableMixin.logger=t.logger),t},s.prototype._initLocale=function(e){var t=this;return t.debug("_initLocale:",e),t.localize=v.default,window._l=t.localize,t},s.prototype._initUser=function(e){var t=this;return t.debug("_initUser:",e),t.user=new g.default.User(e),t.user.logger=t.logger,t},s.prototype._setUpListeners=function(){var t=this;return t.lastAjax={},e(document).bind("ajaxSend",function(e,o,i){var a=i.data;try{a=JSON.parse(a)}catch(e){}t.lastAjax={url:location.href.slice(0,-1)+i.url,data:a}}),t},s.prototype.debugging=function(e){var t=this;try{if(void 0===e)return"true"===localStorage.getItem("galaxy:debug");if(e)return localStorage.setItem("galaxy:debug",!0),!0;localStorage.removeItem("galaxy:debug"),t.debuggingNamespaces(null)}catch(e){console.log((0,v.default)("localStorage not available for debug flag retrieval"))}return!1},s.prototype.debuggingNamespaces=function(e){var t=this;try{if(void 0===e){var o=localStorage.getItem(b);return"string"==typeof o?o.split(","):[]}null===e?localStorage.removeItem(b):localStorage.setItem(b,e);var i=t.debuggingNamespaces();return t.logger&&(t.logger.options.consoleNamespaceWhitelist=i),i}catch(e){console.log((0,v.default)("localStorage not available for debug namespace 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diff --git a/static/scripts/bundled/analysis.bundled.js b/static/scripts/bundled/analysis.bundled.js
index 773bf1cc6f3..1a4ef4b03c9 100644
--- a/static/scripts/bundled/analysis.bundled.js
+++ b/static/scripts/bundled/analysis.bundled.js
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s(".select2-hidden-accessible").remove(),this.masthead.render(),this.renderMessageBox(),this.renderInactivityBox(),this.renderPanels(),this._checkCommunicationServerOnline(),this},renderMessageBox:function(){if(this.config.message_box_visible){var e=this.config.message_box_content||"",t=this.config.message_box_class||"info";this.$el.addClass("has-message-box"),this.$messagebox.attr("class","panel-"+t+"-message").html(e).toggle(!!e).show()}else this.$el.removeClass("has-message-box"),this.$messagebox.hide();return this},renderInactivityBox:function(){if(this.config.show_inactivity_warning){var e=this.config.inactivity_box_content||"",t=s("<a/>").attr("href",Galaxy.root+"user/resend_verification").text("Resend verification");this.$el.addClass("has-inactivity-box"),this.$inactivebox.html(e+" ").append(t).toggle(!!e).show()}else this.$el.removeClass("has-inactivity-box"),this.$inactivebox.hide();return this},renderPanels:function(){var e=this;return n.each(this._panelids,function(t){var i=e.panels[t];i?i.render():(e.$("#center").css(t,0),e.$("#"+t).hide())}),this},_template:function(){return['<div id="everything">','<div id="background"/>','<div id="masthead"/>','<div id="messagebox"/>','<div id="inactivebox" class="panel-warning-message" />','<div id="left" />','<div id="center" />','<div id="right" />',"</div>",'<div id="dd-helper" />'].join("")},toString:function(){return"PageLayoutView"},_checkCommunicationServerOnline:function(){var e=window.Galaxy.config.communication_server_host,t=window.Galaxy.config.communication_server_port,i=window.Galaxy.user.attributes.preferences,n=s("#show-chat-online");i&&-1!=["1","true"].indexOf(i.communication_server)?s.ajax({url:e+":"+t}).success(function(e){null!==window.Galaxy.user.id&&"hidden"===n.css("visibility")&&n.css("visibility","visible")}).error(function(e){n.css("visibility","hidden")}):n.css("visibility","hidden")}});t.default={View:p}}).call(t,i(2),i(1),i(0))},,,function(e,t,i){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var i=e.Model.extend({defaults:{extension:"auto",genome:"?",url_paste:"",status:"init",info:null,file_name:"",file_mode:"",file_size:0,file_type:null,file_path:"",file_data:null,percentage:0,space_to_tab:!1,to_posix_lines:!0,enabled:!0},reset:function(e){this.clear().set(this.defaults).set(e)}}),n=e.Collection.extend({model:i});t.default={Model:i,Collection:n}}).call(t,i(2))},,,,,,,,,,function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(5),o=s(a),l=i(3),r=s(l),d=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"tags-display",select_width:"100%",events:{},initialize:function(e){this.show_editor=!1,!1===e.usePrompt?this.label="":this.label='<label class="prompt">'+(0,r.default)("Tags")+"</label>",this.workflow_mode=e.workflow_mode||!1,this.workflow_mode&&(this.events.click="showEditor",this.events.keydown="keydownHandler"),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.workflow_mode?this.$el.html(this._workflowTemplate()):this.$el.html(this._defaultTemplate()),this.$input().select2({placeholder:"Add tags",width:this.workflow_mode?this.width:this.select_width,tags:function(){return e._getTagsUsed()}}),this._setUpBehaviors(),this},_hashToName:function(e){return e.startsWith("#")?"name:"+e.slice(1):e},_nameToHash:function(e){return e.startsWith("name:")&&(e="#"+e.slice(5)),e},_defaultTemplate:function(){return[this.label,this._renderEditor()].join("")},_workflowTemplate:function(){return[this.show_editor?this._renderEditor():this._renderTags()].join(" ")},keydownHandler:function(e){switch(e.which){case 27:this.hideEditor()}},showEditor:function(){this.show_editor=!0,this.render()},hideEditor:function(){this.show_editor=!1,this.render()},_renderEditor:function(){return'<input class="tags-input" value="'+this.tagsToCSV()+'"/>'},_renderTags:function(){var e=this.model.get("tags"),t=Galaxy.root+"static/images/fugue/tag--plus.png",i=[];return n.each(e,function(e){e=0==e.indexOf("name:")?e.slice(5):e;var t='<span class="label label-info">'+e+"</span>";i.push(t)}),0===i.length&&i.push("<img src="+t+' class="add-tag-button" title="Add tags"/>'),i.join(" ")},tagsToCSV:function(){var e=this,t=this.model.get("tags");return!n.isArray(t)||n.isEmpty(t)?"":t.map(function(t){return n.escape(e._nameToHash(t))}).sort().join(",")},$input:function(){return this.$el.find("input.tags-input")},_getTagsUsed:function(){var e=this;return n.map(Galaxy.user.get("tags_used"),e._nameToHash)},_setUpBehaviors:function(){var e=this;this.$input().on("change",function(t){t.val=n.map(t.val,e._hashToName),e.model.save({tags:t.val}),t.added&&e._addNewTagToTagsUsed(""+t.added.text)})},_addNewTagToTagsUsed:function(e){var t=Galaxy.user.get("tags_used");n.contains(t,e)||(t.push(e),t.sort(),Galaxy.user.set("tags_used",t))},remove:function(){this.$input.off(),this.stopListening(this.model),e.View.prototype.remove.call(this)},toString:function(){return["TagsEditor(",""+this.model,")"].join("")}});t.default={TagsEditor:d}}).call(t,i(2),i(1))},,,,,,,,,,,,,,function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(0),a=n(s),o=i(14),l=n(o),r=i(6),d=n(r),c=a.default,u=e.Router.extend({initialize:function(e,t){this.page=e,this.options=t},push:function(e,t){t=t||{},t.__identifer=Math.random().toString(36).substr(2),c.isEmptyObject(t)||(e+=-1==e.indexOf("?")?"?":"&",e+=c.param(t,!0)),Galaxy.params=t,this.navigate(e,{trigger:!0})},execute:function(e,t,i){Galaxy.debug("router execute:",e,t,i);var n=l.default.parse(t.pop());t.push(n),e&&(this.authenticate(t,i)?e.apply(this,t):this.access_denied())},authenticate:function(e,t){return!0},access_denied:function(){this.page.display(new d.default.Message({status:"danger",message:"You must be logged in with proper credentials to make this request.",persistent:!0}))}});t.default=u}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n,s){Object.defineProperty(t,"__esModule",{value:!0});var a=i(4);!function(e){e&&e.__esModule}(a);t.default=e.View.extend({options:{class_check:"fa-check-square-o",class_uncheck:"fa-square-o",parameters:[{id:"space_to_tab",title:"Convert spaces to tabs"},{id:"to_posix_lines",title:"Use POSIX standard"}]},initialize:function(e){this.model=e.model,this.setElement(n("<div/>").addClass("upload-settings")),this.$el.append(n("<div/>").addClass("upload-settings-cover")),this.$el.append(n("<table/>").addClass("upload-settings-table ui-table-striped").append("<tbody/>")),this.$cover=this.$(".upload-settings-cover"),this.$table=this.$(".upload-settings-table > tbody"),this.listenTo(this.model,"change",this.render,this),this.model.trigger("change")},render:function(){var e=this;this.$table.empty(),s.each(this.options.parameters,function(t){var i=n("<div/>").addClass("upload-"+t.id+" upload-icon-button fa").addClass(e.model.get(t.id)&&e.options.class_check||e.options.class_uncheck).on("click",function(){e.model.get("enabled")&&e.model.set(t.id,!e.model.get(t.id))});e.$table.append(n("<tr/>").append(n("<td/>").append(i)).append(n("<td/>").append(t.title)))}),this.$cover[this.model.get("enabled")&&"hide"||"show"]()}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){Object.defineProperty(t,"__esModule",{value:!0});var a=i(4),o=function(e){return e&&e.__esModule?e:{default:e}}(a);t.default=e.View.extend({initialize:function(t){this.model=new e.Model({cls:"upload-ftp",class_add:"upload-icon-button fa fa-square-o",class_remove:"upload-icon-button fa fa-check-square-o",class_partial:"upload-icon-button fa fa-minus-square-o",help_enabled:!0,help_text:"This Galaxy server allows you to upload files via FTP. To upload some files, log in to the FTP server at <strong>"+t.ftp_upload_site+"</strong> using your Galaxy credentials.",collection:null,onchange:function(){},onadd:function(){},onremove:function(){}}).set(t),this.collection=this.model.get("collection"),this.setElement(this._template()),this.$content=this.$(".upload-ftp-content"),this.$wait=this.$(".upload-ftp-wait"),this.$help=this.$(".upload-ftp-help"),this.$number=this.$(".upload-ftp-number"),this.$disk=this.$(".upload-ftp-disk"),this.$body=this.$(".upload-ftp-body"),this.$warning=this.$(".upload-ftp-warning"),this.$select=this.$(".upload-ftp-select-all"),this.render()},render:function(){var e=this;this.$wait.show(),this.$content.hide(),this.$warning.hide(),this.$help.hide(),n.ajax({url:Galaxy.root+"api/remote_files",method:"GET",success:function(t){e.model.set("ftp_files",t),e._index(),e._renderTable()},error:function(){e._renderTable()}})},_renderTable:function(){var e=this,t=this.model.get("ftp_files");if(this.rows=[],t&&t.length>0){this.$body.empty();var i=0;s.each(t,function(t){e.rows.push(e._renderRow(t)),i+=t.size}),this.$number.html(t.length+" files"),this.$disk.html(o.default.bytesToString(i,!0)),this.collection&&(this.$("._has_collection").show(),this.$select.addClass(this.model.get("class_add")).off().on("click",function(){e._all()}),this._refresh()),this.$content.show()}else this.$warning.show();this.model.get("help_enabled")&&this.$help.show(),this.$wait.hide()},_renderRow:function(e){var t=this,i=this.model.attributes,s=n(this._templateRow(e)),a=s.find(".icon");if(this.$body.append(s),this.collection){var o=this.ftp_index[e.path];a.addClass(void 0===o?i.class_add:i.class_remove),s.on("click",function(){t._switch(a,e),t._refresh()})}else s.on("click",function(){i.onchange(e)});return a},_index:function(){var e=this;this.ftp_index={},this.collection&&this.collection.each(function(t){"ftp"==t.get("file_mode")&&(e.ftp_index[t.get("file_path")]=t.id)})},_all:function(){var e=this.model.attributes,t=this.model.get("ftp_files"),i=this.$select.hasClass(e.class_add);for(var n in t){var s=t[n],a=this.ftp_index[s.path];(void 0===a&&i||void 0!==a&&!i)&&this._switch(this.rows[n],s)}this._refresh()},_switch:function(e,t){e.removeClass();var i=this.model.attributes,n=this.ftp_index[t.path];if(void 0===n){var s=i.onadd(t);e.addClass(i.class_remove),this.ftp_index[t.path]=s}else i.onremove(n),e.addClass(i.class_add),this.ftp_index[t.path]=void 0},_refresh:function(){var e=s.reduce(this.ftp_index,function(e,t){return void 0!==t&&e++,e},0);this.$select.removeClass(),0==e?this.$select.addClass(this.model.get("class_add")):this.$select.addClass(e==this.rows.length?this.model.get("class_remove"):this.model.get("class_partial"))},_templateRow:function(e){return'<tr class="upload-ftp-row"><td class="_has_collection" style="display: none;"><div class="icon"/></td><td class="ftp-name">'+s.escape(e.path)+'</td><td class="ftp-size">'+o.default.bytesToString(e.size)+'</td><td class="ftp-time">'+e.ctime+"</td></tr>"},_template:function(){return'<div class="'+this.model.get("cls")+'"><div class="upload-ftp-wait fa fa-spinner fa-spin"/><div class="upload-ftp-help">'+this.model.get("help_text")+'</div><div class="upload-ftp-content"><span style="whitespace: nowrap; float: left;">Available files: </span><span style="whitespace: nowrap; float: right;"><span class="upload-icon fa fa-file-text-o"/><span class="upload-ftp-number"/>&nbsp;&nbsp;<span class="upload-icon fa fa-hdd-o"/><span class="upload-ftp-disk"/></span><table class="grid" style="float: left;"><thead><tr><th class="_has_collection" style="display: none;"><div class="upload-ftp-select-all"></th><th>Name</th><th>Size</th><th>Created</th></tr></thead><tbody class="upload-ftp-body"/></table></div><div class="upload-ftp-warning warningmessage">Your FTP directory does not contain any files.</div>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(4),o=(s(a),i(15)),l=s(o);t.default=e.View.extend({initialize:function(t){this.model=new e.Model(t),this.setElement("<div/>"),this.render()},render:function(){var e=this.model.attributes,t=n.findWhere(e.list,{id:e.extension});this.extension_popup&&this.extension_popup.remove(),this.extension_popup=new l.default.View({placement:e.placement||"bottom",container:e.$el}),this.extension_popup.title(e.title),this.extension_popup.empty(),this.extension_popup.append(this._templateDescription(t)),this.extension_popup.show()},_templateDescription:function(e){if(e.description){var t=e.description;return e.description_url&&(t+='&nbsp;(<a href="'+e.description_url+'" target="_blank">read more</a>)'),t}return"There is no description available for this file extension."}})}).call(t,i(2),i(1))},function(e,t,i){"use strict";(function(e,t){!function(i){e.event.props.push("dataTransfer"),i.uploadpost=function(t){var n=i.extend({},{data:{},success:function(){},error:function(){},progress:function(){},url:null,maxfilesize:2048,error_filesize:"File exceeds 2GB. Please use a FTP client.",error_default:"Please make sure the file is available.",error_server:"Upload request failed.",error_login:"Uploads require you to log in."},t),s=n.data;if(s.error_message)return void n.error(s.error_message);var a=new FormData;for(var o in s.payload)a.append(o,s.payload[o]);var l=0;for(var o in s.files){var r=s.files[o];a.append(r.name,r.file,r.file.name),l+=r.file.size}if(l>1048576*n.maxfilesize)return void n.error(n.error_filesize);var d=new XMLHttpRequest;d.open("POST",n.url,!0),d.setRequestHeader("Accept","application/json"),d.setRequestHeader("Cache-Control","no-cache"),d.setRequestHeader("X-Requested-With","XMLHttpRequest"),d.onreadystatechange=function(){if(d.readyState==d.DONE){var t=null,i="";if(d.responseText)try{t=e.parseJSON(d.responseText),i=t.err_msg}catch(e){t=d.responseText,i=t}if(d.status<200||d.status>299){var s=d.statusText;403==d.status?s=n.error_login:0==d.status?s=n.error_server:s||(s=n.error_default),n.error(s+" ("+d.status+"). 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h=i.extend({},{dragover:function(){},dragleave:function(){},announce:function(e){},initialize:function(e){},progress:function(e,t){},success:function(e,t){},error:function(e,t){alert(t)},complete:function(){}},e),f={},p=0,m=0,g=!1,_=!1,v=i(this).uploadinput({multiple:!0,onchange:function(e){n(e)},ondragover:e.ondragover,ondragleave:e.ondragleave});return{select:o,add:n,remove:s,start:r,stop:d,reset:l,configure:c,compatible:u}}}(e)}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}function l(e,t){var i=e.toJSON();return $(i,{defaultHideSourceItems:t,creationFn:function(t,i,n){return t=t.map(function(e){return{id:e.id,name:e.name,src:"dataset"===e.history_content_type?"hda":"hdca"}}),e.createHDCA(t,"list",i,n)}})}Object.defineProperty(t,"__esModule",{value:!0});var r=i(59),d=o(r),c=i(16),u=o(c),h=i(5),f=o(h),p=i(108),m=o(p),g=i(8),_=o(g),v=i(109),y=(o(v),i(3)),w=o(y);i(110);var b=e.View.extend(f.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"collection-element",initialize:function(e){this.element=e.element||{},this.selected=e.selected||!1},render:function(){this.dragStartHandler=n.bind(this._dragstart,this),this.dragEndHandler=n.bind(this._dragend,this);var e=this.$el.attr("data-element-id",this.element.id).attr("draggable",!0).html(this.template({element:this.element})).get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this.selected&&this.$el.addClass("selected"),this},template:n.template(['<a class="name" title="',(0,w.default)("Click to rename"),'" href="javascript:void(0)">',"<%- element.name %>","</a>",'<button class="discard btn btn-sm" title="',(0,w.default)("Remove this dataset from the list"),'">',(0,w.default)("Discard"),"</button>"].join("")),select:function(e){this.$el.toggleClass("selected",e),this.trigger("select",{source:this,selected:this.$el.hasClass("selected")})},discard:function(){var e=this,t=this.$el.parent().width();this.$el.animate({"margin-right":t},"fast",function(){e.trigger("discard",{source:e}),e.destroy()})},destroy:function(){this.off(),this.$el.remove()},events:{click:"_click","click .name":"_clickName","click .discard":"_clickDiscard",dragover:"_sendToParent",drop:"_sendToParent"},_click:function(e){e.stopPropagation(),this.select(e)},_clickName:function(e){e.stopPropagation(),e.preventDefault();var t=([(0,w.default)("Enter a new name for the element"),":\n(",(0,w.default)("Note that changing the name here will not rename the dataset"),")"].join(""),prompt((0,w.default)("Enter a new name for the element")+":",this.element.name));t&&(this.element.name=t,this.render())},_clickDiscard:function(e){e.stopPropagation(),this.discard()},_dragstart:function(e){e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.element)),this.$el.addClass("dragging"),this.$el.parent().trigger("collection-element.dragstart",[this])},_dragend:function(e){this.$el.removeClass("dragging"),this.$el.parent().trigger("collection-element.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"DatasetCollectionElementView()"}}),x=e.View.extend(f.default.LoggableMixin).extend(m.default.CollectionCreatorMixin).extend({_logNamespace:"collections",elementViewClass:b,collectionClass:d.default.HistoryDatasetCollection,className:"list-collection-creator collection-creator flex-row-container",minElements:1,defaultAttributes:{creationFn:function(){throw new TypeError("no creation fn for creator")},oncreate:function(){},oncancel:function(){},autoscrollDist:24,highlightClr:"rgba( 64, 255, 255, 1.0 )"},footerSettings:{".hide-originals":"hideOriginals"},initialize:function(e){this.metric("ListCollectionCreator.initialize",e);var t=this;n.each(this.defaultAttributes,function(i,n){i=e[n]||i,t[n]=i}),t.initialElements=e.elements||[],this._setUpCommonSettings(e),this._instanceSetUp(),this._elementsSetUp(),this._setUpBehaviors()},_instanceSetUp:function(){this.selectedIds={},this.$dragging=null,this.blocking=!1},_elementsSetUp:function(){this.invalidElements=[],this.workingElements=[],this.elementViews=[],this.workingElements=this.initialElements.slice(0),this._ensureElementIds(),this._validateElements(),this._mangleDuplicateNames(),this._sortElements()},_ensureElementIds:function(){return this.workingElements.forEach(function(e){e.hasOwnProperty("id")||(e.id=n.uniqueId())}),this.workingElements},_validateElements:function(){var e=this;return e.invalidElements=[],this.workingElements=this.workingElements.filter(function(t){var i=e._isElementInvalid(t);return i&&e.invalidElements.push({element:t,text:i}),!i}),this.workingElements},_isElementInvalid:function(e){return"dataset"!==e.history_content_type?(0,w.default)("is not a dataset"):e.state===u.default.OK||n.contains(u.default.NOT_READY_STATES,e.state)?e.deleted||e.purged?(0,w.default)("has been deleted or purged"):null:(0,w.default)("has errored, is paused, or is not accessible")},_mangleDuplicateNames:function(){var e=1,t={};this.workingElements.forEach(function(i){for(var n=i.name;t.hasOwnProperty(n);)if(n=i.name+" ("+e+")",(e+=1)>=900)throw new Error("Safety hit in while loop - thats impressive");i.name=n,t[i.name]=!0})},_sortElements:function(e){},render:function(e,t){return this.workingElements.length<this.minElements?this._renderInvalid(e,t):(this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.$(".collection-name").focus(),this.trigger("rendered",this),this)},_renderInvalid:function(e,t){return this.$el.empty().html(this.templates.invalidInitial({problems:this.invalidElements,elements:this.workingElements})),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var i=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend(s(this.templates.helpContent()));return this.invalidElements.length&&this._invalidElementsAlert(),i},_renderMiddle:function(e,t){var i=this.$(".middle").empty().html(this.templates.middle());return this._renderList(e),i},_addPluginComponents:function(){this.$(".help-content 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t=e.source.element;this.removeElementView(e.source),this.workingElements=n.without(this.workingElements,t),this.workingElements.length||this._renderNoElementsLeft()}),this},_errorHandler:function(e){this.error(e);var t=this,i=e.message||(0,w.default)("An error occurred");if(e.xhr){var n=e.xhr,s=e.message;0===n.readyState&&0===n.status?i+=": "+(0,w.default)("Galaxy could not be reached and may be updating.")+(0,w.default)(" Try again in a few minutes."):n.responseJSON?i+=":<br /><pre>"+JSON.stringify(n.responseJSON)+"</pre>":i+=": "+s}t._showAlert(i,"alert-danger")},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .reset":"reset","click .clear-selected":"clearSelectedElements","click .collection-elements":"clearSelectedElements","dragover .collection-elements":"_dragoverElements","drop .collection-elements":"_dropElements","collection-element.dragstart 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i=e.offset(),n=e.scrollTop(),s=t-i.top,a=i.top+e.outerHeight()-t;s>=0&&s<this.autoscrollDist?e.scrollTop(n-2):a>=0&&a<this.autoscrollDist&&e.scrollTop(n+2)},_getNearestElement:function(e){for(var t=this.$(".collection-elements li.collection-element").toArray(),i=0;i<t.length;i++){var n=s(t[i]),a=n.offset().top,o=Math.floor(n.outerHeight()/2)+4;if(a+o>e&&a-o<e)return n}return s()},_dropElements:function(e){e.originalEvent&&(e=e.originalEvent),e.preventDefault(),e.dataTransfer.dropEffect="move";var t=this._getNearestElement(e.clientY);return t.length?this.$dragging.insertBefore(t):this.$dragging.insertAfter(this.$(".collection-elements .collection-element").last()),this._syncOrderToDom(),!1},_syncOrderToDom:function(){var e=this,t=[];this.$(".collection-elements .collection-element").each(function(){var i=s(this).attr("data-element-id"),a=n.findWhere(e.workingElements,{id:i});a?t.push(a):console.error("missing element: 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",(0,w.default)("You may need to "),'<a class="cancel-create" href="javascript:void(0)">',(0,w.default)("cancel"),"</a> ",(0,w.default)("and reselect new elements"),".","</span>","</div>","</div>",'<div class="footer flex-row no-flex">','<div class="actions clear vertically-spaced">','<div class="other-options pull-left">','<button class="cancel-create btn" tabindex="-1">',(0,w.default)("Cancel"),"</button>","</div>","</div>","</div>"].join(""))}),toString:function(){return"ListCollectionCreator"}}),C=function(e,t,i){var s,o=a.Deferred(),l=Galaxy.modal||new _.default.View;return t=n.defaults(t||{},{elements:e,oncancel:function(){l.hide(),o.reject("cancelled")},oncreate:function(e,t){l.hide(),o.resolve(t)}}),s=new i(t),l.show({title:t.title||(0,w.default)("Create a collection"),body:s.$el,width:"80%",height:"100%",closing_events:!0}),s.render(),window._collectionCreator=s,o},$=function(e,t){return t=t||{},t.title=(0,w.default)("Create a collection from a list of 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this.attributes.collection_type.indexOf(":")>0?v:m},initialize:function(e,t){this.debug(this+"(DatasetCollection).initialize:",e,t,this),this.elements=this._createElementsModel(),this.on("change:elements",function(){this.log("change:elements"),this.elements=this._createElementsModel()})},_createElementsModel:function(){var t=this.collectionClass();this.debug(this+"._createElementsModel",t,this.get("elements"),this.elements);var i=this.get("elements")||[];this.unset("elements",{silent:!0});var n=this;return e.each(i,function(t,i){e.extend(t,{parent_hdca_id:n.get("id")})}),this.elements=new t(i),this.elements},toJSON:function(){var e=n.Model.prototype.toJSON.call(this);return this.elements&&(e.elements=this.elements.toJSON()),e},inReadyState:function(){var e=this.get("populated");return this.isDeletedOrPurged()||e},hasDetails:function(){return 0!==this.elements.length},getVisibleContents:function(e){return this.elements},parse:function(e,t){var i=n.Model.prototype.parse.call(this,e,t);return i.create_time&&(i.create_time=new Date(i.create_time)),i.update_time&&(i.update_time=new Date(i.update_time)),i},delete:function(e){return this.get("deleted")?s.when():this.save({deleted:!0},e)},undelete:function(e){return!this.get("deleted")||this.get("purged")?s.when():this.save({deleted:!1},e)},isDeletedOrPurged:function(){return this.get("deleted")||this.get("purged")},searchAttributes:["name","tags"],toString:function(){return"DatasetCollection("+[this.get("id"),this.get("name")||this.get("element_identifier")].join(",")+")"}}),_=g.extend(d.default.mixin(u,{constructor:function(e,t){this.debug("\t 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this.contents.allFetched=!1,(0!==this.contents.currentPage?function(){return t.contents.fetchPage(t.contents.currentPage)}:function(){return t.contents.fetchUpdated(i)})().done(function(i,n,s){var a;try{a=new Date(s.getResponseHeader("Date"))}catch(e){}t.lastUpdateTime=a||new Date,t.checkForUpdates(e)})},checkForUpdates:function(e){var t=this;e=e||{};var i=this.UPDATE_DELAY;if(this.id){var n=function(){t.clearUpdateTimeout(),t.updateTimeoutId=setTimeout(function(){t.refresh(e)},i)};this.numOfUnfinishedShownContents()>0?n():this._fetchContentRelatedAttributes().done(function(e){t.numOfUnfinishedJobs()>0?n():t.trigger("ready")})}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},stopPolling:function(){this.clearUpdateTimeout(),this.contents&&this.contents.stopPolling()},parse:function(t,i){var n=e.Model.prototype.parse.call(this,t,i);return n.create_time&&(n.create_time=new 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this.on({"change:deleted":function(e){this.debug("change:deleted",this.includeDeleted,e.get("deleted")),!this.includeDeleted&&e.get("deleted")&&this.remove(e)},copied:function(e,t){this.setCurrent(new v(t,[]))},"set-as-current":function(e){var t=this.currentHistoryId;this.trigger("no-longer-current",t),this.currentHistoryId=e.id}})},_buildFetchData:function(e){return s.extend(y.prototype._buildFetchData.call(this,e),{view:"dev-detailed"})},_buildFetchFilters:function(e){var t=y.prototype._buildFetchFilters.call(this,e)||{},i={};return this.includeDeleted?i.deleted=null:(i.deleted=!1,i.purged=!1),s.defaults(t,i)},fetchFirst:function(e){var t=this,i=a.when();return this.currentHistoryId&&(i=y.prototype.fetchFirst.call(t,{silent:!0,limit:1,filters:{purged:"",deleted:"","encoded_id-in":this.currentHistoryId}})),i.then(function(){return 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t=t||{},this.unshift(e,t),this.currentHistoryId=e.get("id"),t.silent||this.trigger("new-current",e,this),this},toString:function(){return"HistoryCollection("+this.length+",current:"+this.currentHistoryId+")"}});t.default={History:v,HistoryCollection:w}}).call(t,i(2),i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(114),l=a(o),r=i(115),d=a(r),c=i(59),u=a(c),h=i(64),f=a(h),p=i(253),m=a(p),g=i(5),_=a(g),v=i(116),y=a(v),w=500;try{w=localStorage.getItem("historyContentsLimitPerPageDefault")||w}catch(e){}var b=l.default.PaginatedCollection,x=b.extend(_.default.LoggableMixin).extend({_logNamespace:"history",limitPerPage:w,limitPerProgressiveFetch:w,order:"hid",urlRoot:Galaxy.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},initialize:function(e,t){this.on({"sync 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f.default.HistoryPrefs({id:f.default.HistoryPrefs.historyStorageKey(this.historyId)}),this.trigger("new-storage",this.storage,this),this.on({"include-deleted":function(e){this.storage.includeDeleted(e)},"include-hidden":function(e){this.storage.includeHidden(e)}}),this.includeDeleted=this.storage.includeDeleted()||!1,this.includeHidden=this.storage.includeHidden()||!1,this},comparators:e.extend(e.clone(b.prototype.comparators),{name:_.default.buildComparator("name",{ascending:!0}),"name-dsc":_.default.buildComparator("name",{ascending:!1}),hid:_.default.buildComparator("hid",{ascending:!1}),"hid-asc":_.default.buildComparator("hid",{ascending:!0})}),running:function(){return this.filter(function(e){return!e.inReadyState()})},runningAndActive:function(){return this.filter(function(e){return!e.inReadyState()&&e.get("visible")&&!e.get("deleted")})},getByHid:function(e){return this.findWhere({hid:e})},haveDetails:function(){return this.all(function(e){return e.hasDetails()})},hidden:function(){return this.filter(function(e){return e.hidden()})},deleted:function(){return this.filter(function(e){return e.get("deleted")})},visibleAndUndeleted:function(){return this.filter(function(e){return e.get("visible")&&!e.get("deleted")})},setIncludeDeleted:function(t,i){if(e.isBoolean(t)&&t!==this.includeDeleted){if(this.includeDeleted=t,e.result(i,"silent"))return;this.trigger("include-deleted",t,this)}},setIncludeHidden:function(t,i){if(e.isBoolean(t)&&t!==this.includeHidden){if(this.includeHidden=t,i=i||{},e.result(i,"silent"))return;this.trigger("include-hidden",t,this)}},fetch:function(t){if(t=t||{},this.historyId&&!t.details){var i=f.default.HistoryPrefs.get(this.historyId).toJSON();e.isEmpty(i.expandedIds)||(t.details=e.values(i.expandedIds).join(","))}return b.prototype.fetch.call(this,t)},_buildFetchData:function(t){return e.extend(b.prototype._buildFetchData.call(this,t),{v:"dev"})},_fetchParams:b.prototype._fetchParams.concat(["v","details"]),_buildFetchFilters:function(t){var i=b.prototype._buildFetchFilters.call(this,t)||{},n={};return this.includeDeleted||(n.deleted=!1,n.purged=!1),this.includeHidden||(n.visible=!0),e.defaults(i,n)},getTotalItemCount:function(){return this.history.contentsShown()},fetchUpdated:function(e,t){return e&&(t=t||{filters:{}},t.remove=!1,t.filters={"update_time-ge":e.toISOString(),visible:""}),this.fetch(t)},fetchDeleted:function(t){var i=this;return t=t||{},t.filters=e.extend(t.filters,{deleted:!0,purged:void 0}),t.remove=!1,this.trigger("fetching-deleted",this),this.fetch(t).always(function(){i.trigger("fetching-deleted-done",i)})},fetchHidden:function(t){t=t||{};var i=this;return t.filters=e.extend(t.filters,{visible:!1}),t.remove=!1,i.trigger("fetching-hidden",i),i.fetch(t).always(function(){i.trigger("fetching-hidden-done",i)})},fetchAllDetails:function(t){t=t||{};var i={details:"all"};return t.data=e.extend(t.data||{},i),this.fetch(t)},_filterAndUpdate:function(e,t){var i=this,n=i.model.prototype.idAttribute,s=[t];return i.fetch({filters:e,remove:!1}).then(function(e){return e=e.reduce(function(e,t,s){var a=i.get(t[n]);return a?e.concat(a):e},[]),i.ajaxQueue("save",s,e)})},ajaxQueue:function(t,i,n){return n=n||this.models,new y.default.AjaxQueue(n.slice().reverse().map(function(n,s){var a=e.isString(t)?n[t]:t;return function(){return a.apply(n,i)}})).deferred},progressivelyFetchDetails:function(t){function i(n){n=n||0;var l=e.extend(e.clone(t),{view:"summary",keys:r,limit:o,offset:n,reset:0===n,remove:!1});e.defer(function(){a.fetch.call(a,l).fail(s.reject).done(function(e){s.notify(e,o,n),e.length!==o?(a.allFetched=!0,s.resolve(e,o,n)):i(n+o)})})}t=t||{};var s=n.Deferred(),a=this,o=t.limitPerCall||a.limitPerProgressiveFetch,l=d.default.HistoryDatasetAssociation.prototype.searchAttributes,r=l.join(",");return i(),s},isCopyable:function(t){var i=["HistoryDatasetAssociation","HistoryDatasetCollectionAssociation"];return e.isObject(t)&&t.id&&e.contains(i,t.model_class)},copy:function(t){var i,s,a;e.isString(t)?(i=t,a="hda",s="dataset"):(i=t.id,a={HistoryDatasetAssociation:"hda",LibraryDatasetDatasetAssociation:"ldda",HistoryDatasetCollectionAssociation:"hdca"}[t.model_class]||"hda",s="hdca"===a?"dataset_collection":"dataset");var o=this,l=n.ajax(this.url(),{method:"POST",contentType:"application/json",data:JSON.stringify({content:i,source:a,type:s})}).done(function(e){o.add([e],{parse:!0})}).fail(function(e,t,n){o.trigger("error",o,l,{},"Error copying contents",{type:s,id:i,source:a})});return l},createHDCA:function(e,t,i,n,s){return this.model({history_content_type:"dataset_collection",collection_type:t,history_id:this.historyId,name:i,hide_source_items:n||!1,element_identifiers:e}).save(s)},haveSearchDetails:function(){return this.allFetched&&this.all(function(t){return e.has(t.attributes,"annotation")})},matches:function(e){return this.filter(function(t){return t.matches(e)})},clone:function(){var e=s.Collection.prototype.clone.call(this);return e.historyId=this.historyId,e},toString:function(){return["HistoryContents(",[this.historyId,this.length].join(),")"].join("")}});t.default={HistoryContents:x}}).call(t,i(1),i(0),i(2))},function(e,t,i){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var n=i(5),s=function(e){return e&&e.__esModule?e:{default:e}}(n),a=s.default.SessionStorageModel.extend({defaults:{expandedIds:{},show_deleted:!1,show_hidden:!1},addExpanded:function(e){var t=this.get("expandedIds");t[e.id]=e.get("id"),this.save("expandedIds",t)},removeExpanded:function(e){var t=this.get("expandedIds");delete t[e.id],this.save("expandedIds",t)},isExpanded:function(t){return e.result(this.get("expandedIds"),t,!1)},allExpanded:function(){return e.values(this.get("expandedIds"))},clearExpanded:function(){this.set("expandedIds",{})},includeDeleted:function(t){return e.isUndefined(t)||this.set("show_deleted",t),this.get("show_deleted")},includeHidden:function(t){return e.isUndefined(t)||this.set("show_hidden",t),this.get("show_hidden")},toString:function(){return"HistoryPrefs("+this.id+")"}},{storageKeyPrefix:"history:",historyStorageKey:function(e){if(!e)throw new Error("HistoryPrefs.historyStorageKey needs valid id: "+e);return a.storageKeyPrefix+e},get:function(e){return new a({id:a.historyStorageKey(e)})},clearAll:function(e){for(var t in sessionStorage)0===t.indexOf(a.storageKeyPrefix)&&sessionStorage.removeItem(t)}});t.default={HistoryPrefs:a}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var l=i(5),r=o(l),d=i(3),c=(o(d),e.View.extend(r.default.LoggableMixin).extend({_logNamespace:"list",initialize:function(e){this.expanded=e.expanded||!1,this.log("\t expanded:",this.expanded),this.fxSpeed=void 0!==e.fxSpeed?e.fxSpeed:this.fxSpeed},fxSpeed:"fast",render:function(e){var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){var e=n(this.templates.el(this.model.toJSON(),this));return this.expanded&&this.$details(e).replaceWith(this._renderDetails().show()),e},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;0===t?(i._swapNewRender(e),i.trigger("rendered",i)):n(i).queue("fx",[function(e){i.$el.fadeOut(t,e)},function(t){i._swapNewRender(e),t()},function(e){i.$el.fadeIn(t,e)},function(e){i.trigger("rendered",i),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",s.isFunction(this.className)?this.className():this.className).append(e.children())},_setUpBehaviors:function(e){e=e||this.$el,e.find("[title]").tooltip({placement:"bottom"})},$details:function(e){return e=e||this.$el,e.find("> .details")},_renderDetails:function(){var e=n(this.templates.details(this.model.toJSON(),this));return this._setUpBehaviors(e),e},toggleExpanded:function(e){return e=void 0===e?!this.expanded:e,e?this.expand():this.collapse(),this},expand:function(){var e=this;return e._fetchModelDetails().always(function(){e._expand()})},_fetchModelDetails:function(){return this.model.hasDetails()?a.when():this.model.fetch()},_expand:function(){var e=this,t=e._renderDetails();e.$details().replaceWith(t),e.expanded=!0,e.$details().slideDown(e.fxSpeed,function(){e.trigger("expanded",e)})},collapse:function(){this.debug(this+"(ExpandableView).collapse");var e=this;e.expanded=!1,this.$details().slideUp(e.fxSpeed,function(){e.trigger("collapsed",e)})}})),u=c.extend(r.default.mixin(r.default.SelectableViewMixin,r.default.DraggableViewMixin,{tagName:"div",className:"list-item",initialize:function(e){c.prototype.initialize.call(this,e),r.default.SelectableViewMixin.initialize.call(this,e),r.default.DraggableViewMixin.initialize.call(this,e),this._setUpListeners()},_setUpListeners:function(){return this.on("selectable",function(e){e?this.$(".primary-actions").hide():this.$(".primary-actions").show()},this),this},_buildNewRender:function(){var e=c.prototype._buildNewRender.call(this);return e.children(".warnings").replaceWith(this._renderWarnings()),e.children(".title-bar").replaceWith(this._renderTitleBar()),e.children(".primary-actions").append(this._renderPrimaryActions()),e.find("> .title-bar .subtitle").replaceWith(this._renderSubtitle()),e},_swapNewRender:function(e){return c.prototype._swapNewRender.call(this,e),this.selectable&&this.showSelector(0),this.draggable&&this.draggableOn(),this.$el},_renderWarnings:function(){var e=this,t=n('<div class="warnings"></div>'),i=e.model.toJSON();return s.each(e.templates.warnings,function(s){t.append(n(s(i,e)))}),t},_renderTitleBar:function(){return n(this.templates.titleBar(this.model.toJSON(),this))},_renderPrimaryActions:function(){return[]},_renderSubtitle:function(){return n(this.templates.subtitle(this.model.toJSON(),this))},events:{"click .title-bar":"_clickTitleBar","keydown .title-bar":"_keyDownTitleBar","click .selector":"toggleSelect"},_clickTitleBar:function(e){e.stopPropagation(),e.altKey?(this.toggleSelect(e),this.selectable||this.showSelector()):this.toggleExpanded()},_keyDownTitleBar:function(e){return!e||"keydown"!==e.type||32!==e.keyCode&&13!==e.keyCode||(this.toggleExpanded(),e.stopPropagation(),!1)},toString:function(){return"ListItemView("+(this.model?""+this.model:"(no model)")+")"}}));u.prototype.templates=function(){return{el:r.default.wrapTemplate(['<div class="list-element">','<div class="warnings"></div>','<div class="selector">','<span class="fa fa-2x fa-square-o"></span>',"</div>",'<div class="primary-actions"></div>','<div class="title-bar"></div>','<div class="details"></div>',"</div>"]),warnings:{},titleBar:r.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.name %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element"),subtitle:r.default.wrapTemplate(['<div class="subtitle"></div>']),details:r.default.wrapTemplate(['<div class="details"></div>'])}}();var h=u.extend({foldoutStyle:"foldout",foldoutPanelClass:null,initialize:function(e){"drilldown"===this.foldoutStyle&&(this.expanded=!1),this.foldoutStyle=e.foldoutStyle||this.foldoutStyle,this.foldoutPanelClass=e.foldoutPanelClass||this.foldoutPanelClass,u.prototype.initialize.call(this,e),this.foldout=this._createFoldoutPanel()},_renderDetails:function(){if("drilldown"===this.foldoutStyle)return n();var e=u.prototype._renderDetails.call(this);return this._attachFoldout(this.foldout,e)},_createFoldoutPanel:function(){var e=this.model,t=this._getFoldoutPanelClass(e),i=this._getFoldoutPanelOptions(e);return new t(s.extend(i,{model:e}))},_getFoldoutPanelClass:function(){return this.foldoutPanelClass},_getFoldoutPanelOptions:function(){return{foldoutStyle:this.foldoutStyle,fxSpeed:this.fxSpeed}},_attachFoldout:function(e,t){return t=t||this.$("> .details"),this.foldout=e.render(0),e.$("> .controls").hide(),t.append(e.$el)},expand:function(){var e=this;return e._fetchModelDetails().always(function(){"foldout"===e.foldoutStyle?e._expand():"drilldown"===e.foldoutStyle&&e._expandByDrilldown()})},_expandByDrilldown:function(){var e=this;e.listenTo(e.foldout,"close",function(){e.trigger("collapsed:drilldown",e,e.foldout)}),e.trigger("expanded:drilldown",e,e.foldout)}});h.prototype.templates=function(){var e=r.default.wrapTemplate(['<div class="details">',"</div>"],"collection");return s.extend({},u.prototype.templates,{details:e})}(),t.default={ExpandableView:c,ListItemView:u,FoldoutListItemView:h}}).call(t,i(2),i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s,a){function o(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var l=i(65),r=o(l),d=i(16),c=o(d),u=i(21),h=o(u),f=i(5),p=o(f),m=i(3),g=o(m),_=r.default.ListItemView,v=_.extend({_logNamespace:"dataset",className:_.prototype.className+" dataset",id:function(){return["dataset",this.model.get("id")].join("-")},initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log(this+".initialize:",e),_.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_setUpListeners:function(){_.prototype._setUpListeners.call(this);var t=this;return t.listenTo(t.model,{change:function(i){t.model.changedAttributes().state&&t.model.inReadyState()&&t.expanded&&!t.model.hasDetails()?t.model.fetch({silent:!0}).done(function(){t.render()}):e.has(i.changed,"tags")&&1===e.keys(i.changed).length?t.$(".nametags").html(t._renderNametags()):t.render()}})},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):n.when()},remove:function(e,t){var i=this;e=e||this.fxSpeed,this.$el.fadeOut(e,function(){s.View.prototype.remove.call(i),t&&t.call(i)})},_swapNewRender:function(e){return _.prototype._swapNewRender.call(this,e),this.model.has("state")&&this.$el.addClass("state-"+this.model.get("state")),this.$el},_renderPrimaryActions:function(){return[this._renderDisplayButton()]},_renderDisplayButton:function(){var e=this.model.get("state");if(e===c.default.NOT_VIEWABLE||e===c.default.DISCARDED||!this.model.get("accessible"))return null;var t={target:this.linkTarget,classes:"display-btn"};if(this.model.get("purged"))t.disabled=!0,t.title=(0,g.default)("Cannot display datasets removed from disk");else if(e===c.default.UPLOAD)t.disabled=!0,t.title=(0,g.default)("This dataset must finish uploading before it can be viewed");else if(e===c.default.NEW)t.disabled=!0,t.title=(0,g.default)("This dataset is not yet viewable");else{t.title=(0,g.default)("View data"),t.href=this.model.urls.display;var i=this;t.onclick=function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.addDataset(i.model.get("id")),e.preventDefault())}}return t.faIcon="fa-eye",(0,h.default)(t)},_renderDetails:function(){if(this.model.get("state")===c.default.NOT_VIEWABLE)return a(this.templates.noAccess(this.model.toJSON(),this));var e=_.prototype._renderDetails.call(this);return e.find(".actions .left").empty().append(this._renderSecondaryActions()),e.find(".summary").html(this._renderSummary()).prepend(this._renderDetailMessages()),e.find(".display-applications").html(this._renderDisplayApplications()),this._setUpBehaviors(e),e},_renderSummary:function(){var e=this.model.toJSON(),t=this.templates.summaries[e.state];return(t=t||this.templates.summaries.unknown)(e,this)},_renderDetailMessages:function(){var t=this,i=a('<div class="detail-messages"></div>'),n=t.model.toJSON();return e.each(t.templates.detailMessages,function(e){i.append(a(e(n,t)))}),i},_renderDisplayApplications:function(){return this.model.isDeletedOrPurged()?"":[this.templates.displayApplications(this.model.get("display_apps"),this),this.templates.displayApplications(this.model.get("display_types"),this)].join("")},_renderSecondaryActions:function(){switch(this.debug("_renderSecondaryActions"),this.model.get("state")){case c.default.NOT_VIEWABLE:return[];case c.default.OK:case c.default.FAILED_METADATA:case c.default.ERROR:return[this._renderDownloadButton(),this._renderShowParamsButton()]}return[this._renderShowParamsButton()]},_renderShowParamsButton:function(){return(0,h.default)({title:(0,g.default)("View details"),classes:"params-btn",href:this.model.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle",onclick:function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,g.default)("Dataset details"),url:this.href}),e.preventDefault(),e.stopPropagation())}})},_renderDownloadButton:function(){return this.model.get("purged")||!this.model.hasData()?null:e.isEmpty(this.model.get("meta_files"))?a(['<a class="download-btn icon-btn" ','href="',this.model.urls.download,'" title="'+(0,g.default)("Download")+'" download>','<span class="fa fa-floppy-o"></span>',"</a>"].join("")):this._renderMetaFileDownloadButton()},_renderMetaFileDownloadButton:function(){var t=this.model.urls;return a(['<div class="metafile-dropdown dropdown">','<a class="download-btn icon-btn" href="javascript:void(0)" data-toggle="dropdown"',' title="'+(0,g.default)("Download")+'">','<span class="fa fa-floppy-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu" aria-labelledby="dLabel">','<li><a href="'+t.download+'" download>',(0,g.default)("Download dataset"),"</a></li>",e.map(this.model.get("meta_files"),function(e){return['<li><a href="',t.meta_download+e.file_type,'">',(0,g.default)("Download")," ",e.file_type,"</a></li>"].join("")}).join("\n"),"</ul>","</div>"].join("\n"))},_renderNametags:function(){return e.template(["<% _.each(_.sortBy(_.uniq(tags), function(x) { return x }), function(tag){ %>",'<% if (tag.indexOf("name:") == 0){ %>','<span class="label label-info"><%- tag.slice(5) %></span>',"<% } %>","<% }); %>"].join(""))({tags:this.model.get("tags")})},events:e.extend(e.clone(_.prototype.events),{"click .display-btn":function(e){this.trigger("display",this,e)},"click .params-btn":function(e){this.trigger("params",this,e)},"click .download-btn":function(e){this.trigger("download",this,e)}}),toString:function(){return"DatasetListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=e.extend({},_.prototype.templates.warnings,{failed_metadata:p.default.wrapTemplate(['<% if( model.state === "failed_metadata" ){ %>','<div class="warningmessagesmall">',(0,g.default)("An error occurred setting the metadata for this dataset"),"</div>","<% } %>"]),error:p.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,g.default)("There was an error getting the data for this dataset"),": <%- model.error %>","</div>","<% } %>"]),purged:p.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,g.default)("This dataset has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:p.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,g.default)("This dataset has been deleted"),"</div>","<% } %>"])}),i=p.default.wrapTemplate(['<div class="details">','<div class="summary"></div>','<div class="actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !dataset.deleted && !dataset.purged ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="display-applications"></div>',"<% if( dataset.peek ){ %>",'<pre class="dataset-peek"><%= dataset.peek %></pre>',"<% } %>","<% } %>","</div>"],"dataset"),n=p.default.wrapTemplate(['<div class="details">','<div class="summary">',(0,g.default)("You do not have permission to view this dataset"),"</div>","</div>"],"dataset"),s={};s[c.default.OK]=s[c.default.FAILED_METADATA]=p.default.wrapTemplate(["<% if( dataset.misc_blurb ){ %>",'<div class="blurb">','<span class="value"><%- dataset.misc_blurb %></span>',"</div>","<% } %>","<% if( dataset.file_ext ){ %>",'<div class="datatype">','<label class="prompt">',(0,g.default)("format"),"</label>",'<span class="value"><%- dataset.file_ext %></span>',"</div>","<% } %>","<% if( dataset.metadata_dbkey ){ %>",'<div class="dbkey">','<label class="prompt">',(0,g.default)("database"),"</label>",'<span class="value">',"<%- dataset.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( dataset.misc_info ){ %>",'<div class="info">','<span class="value"><%- dataset.misc_info %></span>',"</div>","<% } %>"],"dataset"),s[c.default.NEW]=p.default.wrapTemplate(["<div>",(0,g.default)("This is a new dataset and not all of its data are available yet"),"</div>"],"dataset"),s[c.default.NOT_VIEWABLE]=p.default.wrapTemplate(["<div>",(0,g.default)("You do not have permission to view this dataset"),"</div>"],"dataset"),s[c.default.DISCARDED]=p.default.wrapTemplate(["<div>",(0,g.default)("The job creating this dataset was cancelled before completion"),"</div>"],"dataset"),s[c.default.QUEUED]=p.default.wrapTemplate(["<div>",(0,g.default)("This job is waiting to run"),"</div>"],"dataset"),s[c.default.RUNNING]=p.default.wrapTemplate(["<div>",(0,g.default)("This job is currently running"),"</div>"],"dataset"),s[c.default.UPLOAD]=p.default.wrapTemplate(["<div>",(0,g.default)("This dataset is currently uploading"),"</div>"],"dataset"),s[c.default.SETTING_METADATA]=p.default.wrapTemplate(["<div>",(0,g.default)("Metadata is being auto-detected"),"</div>"],"dataset"),s[c.default.PAUSED]=p.default.wrapTemplate(["<div>",(0,g.default)('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume'),"</div>"],"dataset"),s[c.default.ERROR]=p.default.wrapTemplate(["<% if( !dataset.purged ){ %>","<div><%- dataset.misc_blurb %></div>","<% } %>",'<span class="help-text">',(0,g.default)("An error occurred with this dataset"),":</span>",'<div class="job-error-text"><%- dataset.misc_info %></div>'],"dataset"),s[c.default.EMPTY]=p.default.wrapTemplate(["<div>",(0,g.default)("No data"),": <i><%- dataset.misc_blurb %></i></div>"],"dataset"),s.unknown=p.default.wrapTemplate(['<div>Error: unknown dataset state: "<%- dataset.state %>"</div>'],"dataset");var a={resubmitted:p.default.wrapTemplate(["<% if( model.resubmitted ){ %>",'<div class="resubmitted-msg infomessagesmall">',(0,g.default)("The job creating this dataset has been resubmitted"),"</div>","<% } %>"])},o=p.default.wrapTemplate(["<% _.each( apps, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%- link.target %>" href="<%- link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>"],"apps");return e.extend({},_.prototype.templates,{warnings:t,details:i,noAccess:n,summaries:s,detailMessages:a,displayApplications:o})}(),t.default={DatasetListItemView:v}}).call(t,i(1),i(0),i(2),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(65),l=a(o),r=i(66),d=a(r),c=i(5),u=a(c),h=i(3),f=a(h),p=l.default.FoldoutListItemView,m=l.default.ListItemView,g=p.extend({className:p.prototype.className+" dataset-collection",id:function(){return["dataset_collection",this.model.get("id")].join("-")},initialize:function(e){this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,p.prototype.initialize.call(this,e)},_setUpListeners:function(){p.prototype._setUpListeners.call(this),this.listenTo(this.model,"change",function(t,i){e.has(t.changed,"deleted")?this.render():e.has(t.changed,"element_count")&&this.$("> .title-bar .subtitle").replaceWith(this._renderSubtitle())})},_renderSubtitle:function(){return n(this.templates.subtitle(this.model.toJSON(),this))},_getFoldoutPanelOptions:function(){var t=p.prototype._getFoldoutPanelOptions.call(this);return e.extend(t,{linkTarget:this.linkTarget,hasUser:this.hasUser})},$selector:function(){return this.$("> .selector")},toString:function(){return"DCListItemView("+(this.model?""+this.model:"(no model)")+")"}});g.prototype.templates=function(){var t=e.extend({},p.prototype.templates.warnings,{error:u.default.wrapTemplate(["<% if( model.error ){ %>",'<div class="errormessagesmall">',(0,f.default)("There was an error getting the data for this collection"),": <%- model.error %>","</div>","<% } %>"]),purged:u.default.wrapTemplate(["<% if( model.purged ){ %>",'<div class="purged-msg warningmessagesmall">',(0,f.default)("This collection has been deleted and removed from disk"),"</div>","<% } %>"]),deleted:u.default.wrapTemplate(["<% if( model.deleted && !model.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,f.default)("This collection has been deleted"),"</div>","<% } %>"])}),i=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<div class="title">','<span class="name"><%- collection.element_identifier || collection.name %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"collection"),n=u.default.wrapTemplate(['<div class="subtitle">','<% var countText = collection.element_count? ( collection.element_count + " " ) : ""; %>','<%        if( collection.collection_type === "list" ){ %>',(0,f.default)("a list of <%- countText %>datasets"),'<% } else if( collection.collection_type === "paired" ){ %>',(0,f.default)("a pair of datasets"),'<% } else if( collection.collection_type === "list:paired" ){ %>',(0,f.default)("a list of <%- countText %>dataset pairs"),'<% } else if( collection.collection_type === "list:list" ){ %>',(0,f.default)("a list of <%- countText %>dataset lists"),"<% } %>","</div>"],"collection");return e.extend({},p.prototype.templates,{warnings:t,titleBar:i,subtitle:n})}();var _=m.extend({className:m.prototype.className+" dataset-collection-element",initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log("DCEListItemView.initialize:",e),m.prototype.initialize.call(this,e)},toString:function(){return"DCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});_.prototype.templates=function(){var t=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<div class="title">','<span class="name"><%- element.element_identifier %></span>',"</div>",'<div class="subtitle"></div>',"</div>"],"element");return e.extend({},m.prototype.templates,{titleBar:t})}();var v=d.default.DatasetListItemView.extend({className:d.default.DatasetListItemView.prototype.className+" dataset-collection-element",initialize:function(e){e.logger&&(this.logger=this.model.logger=e.logger),this.log("DatasetDCEListItemView.initialize:",e),d.default.DatasetListItemView.prototype.initialize.call(this,e)},_fetchModelDetails:function(){var e=this;return e.model.inReadyState()&&!e.model.hasDetails()?e.model.fetch({silent:!0}):s.when()},toString:function(){return"DatasetDCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});v.prototype.templates=function(){var t=u.default.wrapTemplate(['<div class="title-bar clear" tabindex="0">','<span class="state-icon"></span>','<div class="title">','<span class="name"><%- element.element_identifier %></span>',"</div>","</div>"],"element");return e.extend({},d.default.DatasetListItemView.prototype.templates,{titleBar:t})}();var y=g.extend({className:g.prototype.className+" dataset-collection-element",_swapNewRender:function(e){g.prototype._swapNewRender.call(this,e);var t=this.model.get("state")||"ok";return this.$el.addClass("state-"+t),this.$el},toString:function(){return"NestedDCDCEListItemView("+(this.model?""+this.model:"(no model)")+")"}});t.default={DCListItemView:g,DCEListItemView:_,DatasetDCEListItemView:v,NestedDCDCEListItemView:y}}).call(t,i(1),i(0),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(11),o=s(a),l=i(6),r=s(l),d=e.View.extend({initialize:function(t){this.model=new e.Model(t),this.url=this.model.get("url"),this.redirect=this.model.get("redirect"),this.setElement("<div/>"),this.render()},render:function(){var e=this;n.ajax({url:Galaxy.root+this.url,type:"GET"}).done(function(t){var i=n.extend({},e.model.attributes,t),s=new o.default({title:i.title,message:i.message,status:i.status||"warning",icon:i.icon,initial_errors:!0,errors:i.errors,inputs:i.inputs,buttons:{submit:new r.default.Button({tooltip:i.submit_tooltip,title:i.submit_title||"Save",icon:i.submit_icon||"fa-save",cls:"btn btn-primary ui-clear-float",onclick:function(){e._submit(s)}})}});e.$el.empty().append(s.$el)}).fail(function(t){e.$el.empty().append(new r.default.Message({message:"Failed to load resource "+e.url+".",status:"danger",persistent:!0}).$el)})},_submit:function(e){var t=this;n.ajax({url:Galaxy.root+t.url,data:JSON.stringify(e.data.create()),type:"PUT",contentType:"application/json"}).done(function(i){var s={};i.id?s.id=i.id:s={message:i.message,status:"success",persistent:!1},t.redirect?window.location=Galaxy.root+t.redirect+"?"+n.param(s):(e.data.matchModel(i,function(t,i){e.field_list[i].value(t.value)}),t._showMessage(e,success_message))}).fail(function(i){t._showMessage(e,{message:i.responseJSON.err_msg,status:"danger",persistent:!1})})},_showMessage:function(e,t){e.$el.parents().filter(function(){return-1!=["auto","scroll"].indexOf(n(this).css("overflow"))}).first().animate({scrollTop:0},500),e.message.update(t)}});t.default={View:d}}).call(t,i(2),i(0))},,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(16),l=a(o),r=i(5),d=a(r),c=i(3),u=a(c),h=d.default.SearchableModelMixin,f=e.Model.extend(d.default.LoggableMixin).extend(d.default.mixin(h,{_logNamespace:"dataset",defaults:{state:l.default.NEW,deleted:!1,purged:!1,name:"(unnamed dataset)",accessible:!0,data_type:"",file_ext:"",file_size:0,meta_files:[],misc_blurb:"",misc_info:"",tags:[]},initialize:function(e,t){this.debug(this+"(Dataset).initialize",e,t),
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t=e.Model.prototype.toJSON.call(this);return n.extend(t,{urls:this.urls})},isDeletedOrPurged:function(){return this.get("deleted")||this.get("purged")},inReadyState:function(){var e=n.contains(l.default.READY_STATES,this.get("state"));return this.isDeletedOrPurged()||e},hasDetails:function(){return!this.get("accessible")||this.has("annotation")},hasData:function(){return this.get("file_size")>0},fetch:function(t){var i=this;return e.Model.prototype.fetch.call(this,t).always(function(){i._generateUrls()})},parse:function(t,i){var n=e.Model.prototype.parse.call(this,t,i);return n.create_time&&(n.create_time=new Date(n.create_time)),n.update_time&&(n.update_time=new Date(n.update_time)),n},save:function(t,i){return i=i||{},i.wait=!!n.isUndefined(i.wait)||i.wait,e.Model.prototype.save.call(this,t,i)},delete:function(e){return this.get("deleted")?s.when():this.save({deleted:!0},e)},undelete:function(e){return!this.get("deleted")||this.get("purged")?s.when():this.save({deleted:!1},e)},purge:function(e){if(this.get("purged"))return s.when();e=e||{},e.url=this.urls.purge;var t=this,i=s.ajax(e);return i.done(function(e,i,n){t.set({deleted:!0,purged:!0})}),i.fail(function(i,n,s){var a=(0,u.default)("Unable to purge dataset");i.responseJSON&&i.responseJSON.error?a=i.responseJSON.error:-1!==i.responseText.indexOf("Removal of datasets by users is not allowed in this Galaxy instance")&&(a="Removal of datasets by users is not allowed in this Galaxy instance"),i.responseText=a,t.trigger("error",t,i,e,(0,u.default)(a),{error:a})}),i},searchAttributes:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],searchAliases:{title:"name",format:"file_ext",database:"genome_build",blurb:"misc_blurb",description:"misc_blurb",info:"misc_info",tag:"tags"},toString:function(){var e=this.get("id")||"";return this.get("name")&&(e='"'+this.get("name")+'",'+e),"Dataset("+e+")"}})),p=e.Collection.extend(d.default.LoggableMixin).extend({_logNamespace:"dataset",model:f,urlRoot:Galaxy.root+"api/datasets",url:function(){return this.urlRoot},ids:function(){return this.map(function(e){return e.get("id")})},notReady:function(){return this.filter(function(e){return!e.inReadyState()})},haveDetails:function(){return this.all(function(e){return e.hasDetails()})},ajaxQueue:function(e,t){var i=s.Deferred(),n=this.length,a=[];if(!n)return i.resolve([]),i;var o=this.chain().reverse().map(function(s,l){return function(){var r=e.call(s,t);r.done(function(e){i.notify({curr:l,total:n,response:e,model:s})}),r.always(function(e){a.push(e),o.length?o.shift()():i.resolve(a)})}}).value();return o.shift()(),i},matches:function(e){return this.filter(function(t){return t.matches(e)})},toString:function(){return["DatasetAssociationCollection(",this.length,")"].join("")}});t.default={DatasetAssociation:f,DatasetAssociationCollection:p}}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(16),a=(n(s),i(5)),o=(n(a),i(3)),l=(n(o),1e3);try{l=localStorage.getItem("collectionFuzzyCountDefault")||l}catch(e){}var r={defaults:{history_id:null,history_content_type:null,hid:null,visible:!0},idAttribute:"type_id",hidden:function(){return!this.get("visible")},isVisible:function(e,t){var i=!0;return e||!this.get("deleted")&&!this.get("purged")||(i=!1),t||this.get("visible")||(i=!1),i},urlRoot:Galaxy.root+"api/histories/",url:function(){var e=this.get("history_content_type"),t=this.get("history_id"),i=this.get("id"),n=""+this.urlRoot+t+"/contents/"+e+"s/"+i;return"dataset_collection"==e&&(n=n+"?view=element-reference&fuzzy_count="+l),n},hide:function(t){return this.get("visible")?this.save({visible:!1},t):e.when()},unhide:function(t){return this.get("visible")?e.when():this.save({visible:!0},t)},toString:function(){return[this.get("type_id"),this.get("hid"),this.get("name")].join(":")}};t.default={HistoryContentMixin:r}}).call(t,i(0))},function(e,t,i){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var 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Please try again in a few minutes.")+" "+h,(0,u.default)("Cannot connect to Galaxy"))}function r(e,t,i,n,s){return n=n||f,n+=" "+h,s=s||(0,u.default)("An error occurred"),a(n,s,d(e,t,i))}function d(e,t,i){return{raven:n.result(window.Raven,"lastEventId"),userAgent:navigator.userAgent,onLine:navigator.onLine,version:n.result(Galaxy.config,"version_major"),xhr:n.omit(t,n.functions(t)),options:n.omit(i,"xhr"),url:n.result(Galaxy.lastAjax,"url"),data:n.result(Galaxy.lastAjax,"data"),model:n.result(e,"toJSON",""+e),user:n.omit(n.result(Galaxy.user,"toJSON"),"email")}}Object.defineProperty(t,"__esModule",{value:!0});var c=i(3),u=function(e){return e&&e.__esModule?e:{default:e}}(c),h=(0,u.default)("Please contact a Galaxy administrator if the problem persists."),f=(0,u.default)("An error occurred while updating information with the server."),p=(0,u.default)("The following information can assist the developers in finding the source of the error:");t.default={errorModal:a,offlineErrorModal:o,badGatewayErrorModal:l,ajaxErrorModal:r}}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e){function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(t[i]=e[i]);return t.default=e,t}Object.defineProperty(t,"__esModule",{value:!0});var s=i(1),a=n(s),o=i(2),l=n(o),r=i(5),d=function(e){return e&&e.__esModule?e:{default:e}}(r),c=l.Collection.extend({initialize:function(e,t){l.Collection.prototype.initialize.call(this,e,t),this.setOrder(t.order||this.order,{silent:!0})},_setUpListeners:function(){return this.on({"changed-order":this.sort})},fetch:function(e){return e=this._buildFetchOptions(e),Galaxy.debug("fetch options:",e),l.Collection.prototype.fetch.call(this,e)},_buildFetchOptions:function(e){e=a.clone(e)||{};var t=this;e.traditional=!0,e.data=e.data||t._buildFetchData(e),Galaxy.debug("data:",e.data);var i=this._buildFetchFilters(e);return Galaxy.debug("filters:",i),a.isEmpty(i)||a.extend(e.data,this._fetchFiltersToAjaxData(i)),Galaxy.debug("data:",e.data),e},_buildFetchData:function(e){var t={};return this.order&&(t.order=this.order),a.defaults(a.pick(e,this._fetchParams),t)},_fetchParams:["order","limit","offset","view","keys"],_buildFetchFilters:function(e){return a.clone(e.filters||{})},_fetchFiltersToAjaxData:function(e){var t={q:[],qv:[]};return a.each(e,function(e,i){void 0!==e&&""!==e&&(!0===e&&(e="True"),!1===e&&(e="False"),null===e&&(e="None"),t.q.push(i),t.qv.push(e))}),t},reset:function(e,t){return this.allFetched=!1,l.Collection.prototype.reset.call(this,e,t)},order:null,comparators:{update_time:d.default.buildComparator("update_time",{ascending:!1}),"update_time-asc":d.default.buildComparator("update_time",{ascending:!0}),create_time:d.default.buildComparator("create_time",{ascending:!1}),"create_time-asc":d.default.buildComparator("create_time",{ascending:!0})},setOrder:function(e,t){t=t||{};var i=this,n=i.comparators[e];if(a.isUndefined(n))throw new Error("unknown order: "+e);if(n!==i.comparator)return i.order=e,i.comparator=n,t.silent||i.trigger("changed-order",t),i}}),u=c.extend({limitPerPage:500,initialize:function(e,t){c.prototype.initialize.call(this,e,t),this.currentPage=t.currentPage||0},getTotalItemCount:function(){return this.length},shouldPaginate:function(){return this.getTotalItemCount()>=this.limitPerPage},getLastPage:function(){return Math.floor(this.getTotalItemCount()/this.limitPerPage)},getPageCount:function(){return this.getLastPage()+1},getPageLimitOffset:function(e){return e=this.constrainPageNum(e),{limit:this.limitPerPage,offset:e*this.limitPerPage}},constrainPageNum:function(e){return Math.max(0,Math.min(e,this.getLastPage()))},fetchPage:function(e,t){var i=this;return e=i.constrainPageNum(e),i.currentPage=e,t=a.defaults(t||{},i.getPageLimitOffset(e)),i.trigger("fetching-more"),i.fetch(t).always(function(){i.trigger("fetching-more-done")})},fetchCurrentPage:function(e){return this.fetchPage(this.currentPage,e)},fetchPrevPage:function(e){return this.fetchPage(this.currentPage-1,e)},fetchNextPage:function(e){return this.fetchPage(this.currentPage+1,e)}}),h=c.extend({limitOnFirstFetch:null,limitPerFetch:100,initialize:function(e,t){c.prototype.initialize.call(this,e,t),this.limitOnFirstFetch=t.limitOnFirstFetch||this.limitOnFirstFetch,this.limitPerFetch=t.limitPerFetch||this.limitPerFetch,this.allFetched=!1,this.lastFetched=t.lastFetched||0},_buildFetchOptions:function(e){return e.remove=e.remove||!1,c.prototype._buildFetchOptions.call(this,e)},fetchFirst:function(e){return Galaxy.debug("ControlledFetchCollection.fetchFirst:",e),e=e?a.clone(e):{},this.allFetched=!1,this.lastFetched=0,this.fetchMore(a.defaults(e,{reset:!0,limit:this.limitOnFirstFetch}))},fetchMore:function(t){Galaxy.debug("ControlledFetchCollection.fetchMore:",t),t=a.clone(t||{});var i=this;if(Galaxy.debug("fetchMore, options.reset:",t.reset),!t.reset&&i.allFetched)return e.when();t.reset?t.offset=0:void 0===t.offset&&(t.offset=i.lastFetched);var n=t.limit=t.limit||i.limitPerFetch||null;return Galaxy.debug("fetchMore, limit:",n,"offset:",t.offset),i.trigger("fetching-more"),i.fetch(t).always(function(){i.trigger("fetching-more-done")}).done(function(e){var t=a.isArray(e)?e.length:0;i.lastFetched+=t,Galaxy.debug("fetchMore, lastFetched:",i.lastFetched),(!n||t<n)&&(i.allFetched=!0,i.trigger("all-fetched",this))})},fetchAll:function(e){e=e||{};var t=this;return e=a.pick(e,"silent"),e.filters={},t.fetch(e).done(function(){t.allFetched=!0,t.trigger("all-fetched",t)})}});t.default={ControlledFetchCollection:c,PaginatedCollection:u,InfinitelyScrollingCollection:h}}).call(t,i(0))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(106),a=n(s),o=i(107),l=n(o),r=i(5),d=n(r),c=i(3),u=(n(c),a.default.DatasetAssociation),h=l.default.HistoryContentMixin,f=u.extend(d.default.mixin(h,{defaults:e.extend({},u.prototype.defaults,h.defaults,{history_content_type:"dataset",model_class:"HistoryDatasetAssociation"})}));t.default={HistoryDatasetAssociation:f}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function i(e,t){if(!e)throw new ReferenceError("this hasn't been initialised - super() hasn't been called");return!t||"object"!=typeof t&&"function"!=typeof t?e:t}function n(e,t){if("function"!=typeof t&&null!==t)throw new TypeError("Super expression 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this.deferred.always(e)}},{key:"progress",value:function(e){return this.deferred.progress(e)}}],[{key:"create",value:function(e){return new t(e).deferred}}]),t}(),r=function(e){function t(e){s(this,t);var n=i(this,(t.__proto__||Object.getPrototypeOf(t)).call(this,e));return n.names={},n}return n(t,e),o(t,[{key:"add",value:function(e){if(!e.hasOwnProperty("name")||!e.hasOwnProperty("fn"))throw new Error('NamedAjaxQueue.add requires an object with both "name" and "fn": '+JSON.stringify(e));if(!this.names.hasOwnProperty(e.name))return this.names[e.name]=!0,a(t.prototype.__proto__||Object.getPrototypeOf(t.prototype),"add",this).call(this,e.fn)}},{key:"clear",value:function(){return this.names={},this}}],[{key:"create",value:function(e){return new t(e).deferred}}]),t}(l);t.default={AjaxQueue:l,NamedAjaxQueue:r}}).call(t,i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(65),l=a(o),r=i(256),d=a(r),c=i(5),u=a(c),h=i(3),f=a(h);i(118);var p=e.View.extend(u.default.LoggableMixin).extend({_logNamespace:"list",viewClass:l.default.ListItemView,collectionClass:e.Collection,tagName:"div",className:"list-panel",fxSpeed:"fast",emptyMsg:(0,f.default)("This list is empty"),noneFoundMsg:(0,f.default)("No matching items found"),searchPlaceholder:(0,f.default)("search"),initialize:function(e,t){e=e||{},e.logger&&(this.logger=e.logger),this.log(this+".initialize:",e),this.fxSpeed=n.has(e,"fxSpeed")?e.fxSpeed:this.fxSpeed,this.filters=[],this.searchFor=e.searchFor||"",this.selecting=void 0===e.selecting||e.selecting,this.selected=e.selected||[],this.lastSelected=null,this.dragItems=e.dragItems||!1,this.viewClass=e.viewClass||this.viewClass,this.views=[],this.collection=e.collection||this._createDefaultCollection(),this.filters=e.filters||[],this.$scrollContainer=e.$scrollContainer||this.$scrollContainer,this.title=e.title||"",this.subtitle=e.subtitle||"",this._setUpListeners()},_setUpListeners:function(){return this.off(),this.on({error:function(e,t,i,n,s){console.error(e,t,i,n,s)},loading:function(){this._showLoadingIndicator("loading...",40)},"loading-done":function(){this._hideLoadingIndicator(40)}}),this.once("rendered",function(){this.trigger("rendered:initial",this)}),this._setUpCollectionListeners(),this._setUpViewListeners(),this},_createDefaultCollection:function(){return new this.collectionClass([])},_setUpCollectionListeners:function(){return this.log(this+"._setUpCollectionListeners",this.collection),this.stopListening(this.collection),this.listenTo(this.collection,{error:function(e,t,i,n,s){this.trigger("error",e,t,i,n,s)},update:function(e,t){var i=t.changes;return t.renderAll||i.added.length+i.removed.length>1?this.renderItems():1===i.added.length?this.addItemView(n.first(i.added),e,t):1===i.removed.length?this.removeItemView(n.first(i.removed),e,t):void 0}}),this},_setUpViewListeners:function(){this.log(this+"._setUpViewListeners"),this.on({"view:selected":function(e,t){if(t&&t.shiftKey&&this.lastSelected){var i=this.viewFromModelId(this.lastSelected);i&&this.selectRange(e,i)}else t&&t.altKey&&!this.selecting&&this.showSelectors();this.selected.push(e.model.id),this.lastSelected=e.model.id},"view:de-selected":function(e,t){this.selected=n.without(this.selected,e.model.id)}})},render:function(e){this.log(this+".render",e);var t=this._buildNewRender();return this._setUpBehaviors(t),this._queueNewRender(t,e),this},_buildNewRender:function(){this.debug(this+"(ListPanel)._buildNewRender");var e=s(this.templates.el({},this));return this._renderControls(e),this._renderTitle(e),this._renderSubtitle(e),this._renderSearch(e),this.renderItems(e),e},_renderControls:function(e){this.debug(this+"(ListPanel)._renderControls");var t=s(this.templates.controls({},this));return e.find(".controls").replaceWith(t),t},_renderTitle:function(e){},_renderSubtitle:function(e){},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;i.log("_queueNewRender:",e,t),s(i).queue("fx",[function(e){i.$el.fadeOut(t,e)},function(t){i._swapNewRender(e),t()},function(e){i.$el.fadeIn(t,e)},function(e){i.trigger("rendered",i),e()}])},_swapNewRender:function(e){return this.$el.empty().attr("class",this.className).append(e.children()),this.selecting&&this.showSelectors(0),this},_setUpBehaviors:function(e){return e=e||this.$el,this.$controls(e).find("[title]").tooltip(),this._renderMultiselectActionMenu(e),this},_renderMultiselectActionMenu:function(e){e=e||this.$el;var t=e.find(".list-action-menu"),i=this.multiselectActions();if(!i.length)return t.empty();var n=s(['<div class="list-action-menu btn-group">','<button class="list-action-menu-btn btn btn-default dropdown-toggle" data-toggle="dropdown">',(0,f.default)("For all selected"),"...","</button>",'<ul class="dropdown-menu pull-right" role="menu">',"</ul>","</div>"].join("")),a=i.map(function(e){var t=['<li><a href="javascript:void(0);">',e.html,"</a></li>"].join("");return s(t).click(function(t){return t.preventDefault(),e.func(t)})});return n.find("ul").append(a),t.replaceWith(n),n},multiselectActions:function(){return[]},$scrollContainer:function(e){return(e||this.$el).parent().parent()},$controls:function(e){return(e||this.$el).find("> .controls")},$list:function(e){return(e||this.$el).find("> .list-items")},$messages:function(e){return(e||this.$el).find("> .controls .messages")},$emptyMessage:function(e){return(e||this.$el).find("> .empty-message")},renderItems:function(e){e=e||this.$el;var t=this;t.log(this+".renderItems",e);var i=t.$list(e);t.freeViews();var n=t._filterCollection();return t.views=n.map(function(e){return t._createItemView(e)}),i.empty(),t.views.length&&t._attachItems(e),t._renderEmptyMessage(e).toggle(!t.views.length),t.trigger("views:ready",t.views),t.views},_filterCollection:function(){var e=this;return e.collection.filter(n.bind(e._filterItem,e))},_filterItem:function(e){var t=this;return n.every(t.filters.map(function(t){return t.call(e)}))&&(!t.searchFor||e.matchesAll(t.searchFor))},_createItemView:function(e){var t=this._getItemViewClass(e),i=n.extend(this._getItemViewOptions(e),{model:e}),s=new t(i);return this._setUpItemViewListeners(s),s},_destroyItemView:function(e){this.stopListening(e),this.views=n.without(this.views,e)},_destroyItemViews:function(e){var t=this;return t.views.forEach(function(e){t.stopListening(e)}),t.views=[],t},freeViews:function(){return this._destroyItemViews()},_getItemViewClass:function(e){return this.viewClass},_getItemViewOptions:function(e){return{fxSpeed:this.fxSpeed,expanded:!1,selectable:this.selecting,selected:n.contains(this.selected,e.id),draggable:this.dragItems}},_setUpItemViewListeners:function(e){var t=this;return this.listenTo(e,"all",function(){var e=Array.prototype.slice.call(arguments,0);e[0]="view:"+e[0],t.trigger.apply(t,e)}),this.listenTo(e,"draggable:dragstart",function(e,t){var i={},n=this.getSelectedModels();i=n.length?n.toJSON():[t.model.toJSON()],e.dataTransfer.setData("text",JSON.stringify(i))},this),t},_attachItems:function(e){var t=this;return this.$list(e).append(this.views.map(function(e){return t._renderItemView$el(e)})),this},_renderItemView$el:function(e){return e.render(0).$el},_renderEmptyMessage:function(e){this.debug("_renderEmptyMessage",e,this.searchFor);var t=this.searchFor?this.noneFoundMsg:this.emptyMsg;return this.$emptyMessage(e).text(t)},expandAll:function(){n.each(this.views,function(e){e.expand()})},collapseAll:function(){n.each(this.views,function(e){e.collapse()})},addItemView:function(e,t,i){var n=this,a=n._filterCollection().indexOf(e);if(-1!==a){var o=n._createItemView(e);return s(o).queue("fx",[function(e){n.$emptyMessage().is(":visible")?n.$emptyMessage().fadeOut(n.fxSpeed,e):e()},function(e){n._attachView(o,a),e()}]),o}},_attachView:function(e,t,i){i=!!n.isUndefined(i)||i,t=t||0;var s=this;return s.views.splice(t,0,e),s._insertIntoListAt(t,s._renderItemView$el(e).hide()),s.trigger("view:attached",e),i?e.$el.slideDown(s.fxSpeed,function(){s.trigger("view:attached:rendered")}):(e.$el.show(),s.trigger("view:attached:rendered")),e},_insertIntoListAt:function(e,t){var i=this.$list();return 0===e?i.prepend(t):i.children().eq(e-1).after(t),t},removeItemView:function(e,t,i){var a=this,o=n.find(a.views,function(t){return t.model===e});if(o)return a.views=n.without(a.views,o),a.trigger("view:removed",o),s({}).queue("fx",[function(e){o.$el.fadeOut(a.fxSpeed,e)},function(e){o.remove(),a.trigger("view:removed:rendered"),a.views.length?e():a._renderEmptyMessage().fadeIn(a.fxSpeed,e)}]),o},viewFromModelId:function(e){return n.find(this.views,function(t){return t.model.id===e})},viewFromModel:function(e){return e?this.viewFromModelId(e.id):void 0},viewsWhereModel:function(e){return this.views.filter(function(t){return n.isMatch(t.model.attributes,e)})},viewRange:function(e,t){if(e===t)return e?[e]:[];var i=this.views.indexOf(e),n=this.views.indexOf(t);return-1===i||-1===n?i===n?[]:-1===i?[t]:[e]:i<n?this.views.slice(i,n+1):this.views.slice(n,i+1)},_renderSearch:function(e){return e.find(".controls .search-input").searchInput({placeholder:this.searchPlaceholder,initialVal:this.searchFor,onfirstsearch:n.bind(this._firstSearch,this),onsearch:n.bind(this.searchItems,this),onclear:n.bind(this.clearSearch,this)}),e},_firstSearch:function(e){return this.log("onFirstSearch",e),this.searchItems(e)},searchItems:function(e,t){if(this.log("searchItems",e,this.searchFor,t),!t&&this.searchFor===e)return this;this.searchFor=e,this.renderItems(),this.trigger("search:searching",e,this);var i=this.$("> .controls .search-query");return i.val()!==e&&i.val(e),this},clearSearch:function(e){return this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.renderItems(),this},THROTTLE_SELECTOR_FX_AT:20,showSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!0,this.$(".list-actions").slideDown(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.showSelector(e)})},hideSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!1,this.$(".list-actions").slideUp(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.hideSelector(e)}),this.selected=[],this.lastSelected=null},toggleSelectors:function(){this.selecting?this.hideSelectors():this.showSelectors()},selectAll:function(e){n.each(this.views,function(t){t.select(e)})},deselectAll:function(e){this.lastSelected=null,n.each(this.views,function(t){t.deselect(e)})},selectRange:function(e,t){var i=this.viewRange(e,t);return n.each(i,function(e){e.select()}),i},getSelectedViews:function(){return n.filter(this.views,function(e){return e.selected})},getSelectedModels:function(){return new this.collection.constructor(n.map(this.getSelectedViews(),function(e){return e.model}))},_showLoadingIndicator:function(e,t,i){this.debug("_showLoadingIndicator",this.indicator,e,t,i),t=void 0!==t?t:this.fxSpeed,this.indicator||(this.indicator=new d.default(this.$el),this.debug("\t created",this.indicator)),this.$el.is(":visible")?(this.$el.fadeOut(t),this.indicator.show(e,t,i)):this.indicator.show(0,i)},_hideLoadingIndicator:function(e,t){this.debug("_hideLoadingIndicator",this.indicator,e,t),e=void 0!==e?e:this.fxSpeed,this.indicator&&this.indicator.hide(e,t)},scrollPosition:function(){return this.$scrollContainer().scrollTop()},scrollTo:function(e,t){return t=t||0,this.$scrollContainer().animate({scrollTop:e},t),this},scrollToTop:function(e){return this.scrollTo(0,e)},scrollToItem:function(e,t){return this},scrollToId:function(e,t){return this.scrollToItem(this.viewFromModelId(e),t)},events:{"click .select-all":"selectAll","click .deselect-all":"deselectAll"},toString:function(){return"ListPanel("+this.collection+")"}});p.prototype.templates=function(){return{el:u.default.wrapTemplate(["<div>",'<div class="controls"></div>','<div class="list-items"></div>','<div class="empty-message infomessagesmall"></div>',"</div>"]),controls:u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- view.title %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"])}}();var m=p.extend({modelCollectionKey:"contents",initialize:function(e){p.prototype.initialize.call(this,e),this.selecting=void 0!==e.selecting&&e.selecting,this.setModel(this.model,e)},setModel:function(e,t){if(t=t||{},this.debug(this+".setModel:",e,t),this.freeModel(),this.freeViews(),e){var i=this.model?this.model.get("id"):null;this.model=e,this.logger&&(this.model.logger=this.logger),this._setUpModelListeners(),this.stopListening(this.collection),this.collection=this.model[this.modelCollectionKey]||t.collection||this._createDefaultCollection(),this._setUpCollectionListeners(),i&&e.get("id")!==i&&this.trigger("new-model",this)}return this},freeModel:function(){return this.model&&this.stopListening(this.model),this},_setUpModelListeners:function(){return this.log(this+"._setUpModelListeners",this.model),this.listenTo(this.model,"error",function(){var e=Array.prototype.slice.call(arguments,0);e.unshift("error"),this.trigger.apply(this,e)},this),this.logger&&this.listenTo(this.model,"all",function(e){this.info(this+"(model)",e,arguments)}),this},_renderControls:function(e){this.debug(this+"(ModelListPanel)._renderControls");var t=this.model?this.model.toJSON():{},i=s(this.templates.controls(t,this));return e.find(".controls").replaceWith(i),i},toString:function(){return"ModelListPanel("+this.model+")"}});m.prototype.templates=function(){var e=u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- model.name %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"]);return n.extend(n.clone(p.prototype.templates),{controls:e})}(),t.default={ListPanel:p,ModelListPanel:m}}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";function n(e,t){function i(e){o(this).parent().children("input").val("").trigger("searchInput.clear").blur(),t.onclear()}function n(e,n){if(!n)return i();o(this).trigger("search.search",n),"function"==typeof t.onfirstsearch&&u?(u=!1,t.onfirstsearch(n)):t.onsearch(n)}function s(){return['<input type="text" name="',t.name,'" placeholder="',t.placeholder,'" ','class="search-query ',t.classes,'" ',"/>"].join("")}var r=27,d=13,c=o(e),u=!0,h={initialVal:"",name:"search",placeholder:"search",classes:"",onclear:function(){},onfirstsearch:null,onsearch:function(e){},minSearchLen:0,escWillClear:!0,oninit:function(){}};return"string"===a.default.type(t)?("toggle-loading"===t&&function(){c.find(".search-loading").toggle(),c.find(".search-clear").toggle()}(),c):("object"===a.default.type(t)&&(t=a.default.extend(!0,{},h,t)),c.addClass("search-input").prepend([function(){return o(s()).focus(function(e){o(this).select()}).keyup(function(e){if(e.preventDefault(),e.stopPropagation(),e.which===r&&t.escWillClear)i.call(this,e);else{var s=o(this).val();(e.which===d||t.minSearchLen&&s.length>=t.minSearchLen)&&n.call(this,e,s)}}).val(t.initialVal)}(),function(){return o(['<span class="search-clear fa fa-times-circle" ','title="',l("clear search (esc)"),'"></span>'].join("")).tooltip({placement:"bottom"}).click(function(e){i.call(this,e)})}(),function(){return o(['<span class="search-loading fa fa-spinner fa-spin" ','title="',l("loading..."),'"></span>'].join("")).hide().tooltip({placement:"bottom"})}()]))}var s=i(0),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=a.default,l=window._l||function(e){return e};a.default.fn.extend({searchInput:function(e){return this.each(function(){return n(this,e)})}})},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(66),a=n(s),o=i(5),l=n(o),r=i(120),d=n(r),c=i(3),u=n(c),h=a.default.DatasetListItemView,f=h.extend({className:h.prototype.className+" history-content",initialize:function(e,t){h.prototype.initialize.call(this,e,t)},toString:function(){return"HDAListItemView("+(this.model?""+this.model:"(no model)")+")"}});f.prototype.templates=function(){var t=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+"</span>\n            </div>\n            </br>\n            "+d.default.nametagTemplate(t)+"\n        </div>\n    "},i=e.extend({},h.prototype.templates.warnings,{hidden:l.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,u.default)("This dataset has been hidden"),"</div>","<% } %>"],"dataset")});return e.extend({},h.prototype.templates,{titleBar:t,warnings:i})}(),t.default={HDAListItemView:f}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function i(t){return 0==t.indexOf("name:")?'<span class="label label-info">'+e.escape(t.slice(5))+"</span>":""}function n(t){return'<span class="nametags">'+e.sortBy(e.uniq(t.tags)).map(i).join("")+"</span>"}Object.defineProperty(t,"__esModule",{value:!0}),t.default={nametagTemplate:n}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(16),a=n(s),o=i(67),l=n(o),r=i(122),d=n(r),c=i(5),u=(n(c),i(120)),h=n(u),f=i(3),p=n(f),m=l.default.DCListItemView,g=m.extend({className:m.prototype.className+" history-content",_setUpListeners:function(){var e=this;m.prototype._setUpListeners.call(this);var t=function(t,i){e.render()};this.model.jobStatesSummary&&this.listenTo(this.model.jobStatesSummary,"change",t),this.listenTo(this.model,{"change:tags change:visible change:state":t})},_getFoldoutPanelClass:function(){return d.default.CollectionView},_swapNewRender:function(e){m.prototype._swapNewRender.call(this,e);var t,i=this.model.jobStatesSummary;t=i?i.new()?"loading":i.errored()?"error":i.terminal()?"ok":i.running()?"running":"queued":this.model.get("job_source_id")?"loading":this.model.get("populated_state")?a.default.OK:a.default.RUNNING,this.$el.addClass("state-"+t);var n=this.stateDescription();return this.$(".state-description").html(n),this.$el},stateDescription:function(){var e=this.model,t=(e.get("element_count"),e.get("job_source_type")),i=(this.model.get("collection_type"),d.default.collectionTypeDescription(e)),n=d.default.collectionDescription(e),s=e.jobStatesSummary;if(t&&"Job"!=t){if(s&&s.hasDetails()){var a=s.new(),o=a?null:s.jobCount();if(a)return'\n                        <div class="progress state-progress">\n                            <span class="note">Creating jobs.<span class="blinking">..</span></span>\n                            <div class="progress-bar info" style="width:100%">\n                        </div>';if(s.errored()){return"a "+i+" with "+s.numInError()+" / "+o+" jobs in error"}if(s.terminal())return n;var l=s.states().running||0,r=s.states().ok||0,c=r/(1*o),u=l/(1*o),h=1-c-u;return'\n                        <div class="progress state-progress">\n                            <span class="note">'+(o&&o>1?o+" jobs":"a job")+" generating a "+i+'</span>\n                            <div class="progress-bar ok" style="width:'+100*c+'%"></div>\n                            <div class="progress-bar running" style="width:'+100*u+'%"></div>\n                            <div class="progress-bar new" style="width:'+100*h+'%">\n                        </div>'}return'\n                    <div class="progress state-progress">\n                        <span class="note">Loading job data for '+i+'.<span class="blinking">..</span></span>\n                        <div class="progress-bar info" style="width:100%">\n                    </div>'}return n},toString:function(){return"HDCAListItemView("+(this.model?""+this.model:"(no model)")+")"}});g.prototype.templates=function(){var t=e.extend({},m.prototype.templates.warnings,{hidden:function(e){e.visible||(0,p.default)("This collection has been hidden")}}),i=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+'</span>\n            </div>\n            <div class="state-description">\n            </div>\n            '+h.default.nametagTemplate(t)+"\n        </div>\n    "};return e.extend({},m.prototype.templates,{warnings:t,titleBar:i})}(),t.default={HDCAListItemView:g}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}function s(e){var t=e.get("collection_type");return"list"==t?(0,f.default)("list"):"paired"==t?(0,f.default)("dataset pair"):"list:paired"==t?(0,f.default)("list of pairs"):(0,f.default)("nested list")}function a(e){var t=e.get("element_count"),i="a "+s(e);if(t){var n;1==t?n="with 1 item":t&&(n="with "+t+" items"),i=i+" "+(0,f.default)(n)}return i}Object.defineProperty(t,"__esModule",{value:!0});var o=i(117),l=n(o),r=i(60),d=(n(r),i(67)),c=n(d),u=i(5),h=(n(u),i(3)),f=n(h),p=l.default.ModelListPanel,m=p.extend({_logNamespace:"collections",className:p.prototype.className+" dataset-collection-panel",DatasetDCEViewClass:c.default.DatasetDCEListItemView,modelCollectionKey:"elements",initialize:function(e){p.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,this.panelStack=[],this.parentName=e.parentName,this.foldoutStyle=e.foldoutStyle||"foldout",this.downloadUrl=Galaxy.root+"api/dataset_collections/"+this.model.attributes.id+"/download"},getNestedDCDCEViewClass:function(){return c.default.NestedDCDCEListItemView.extend({foldoutPanelClass:m})},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;this.handleWarning(e),i.log("_queueNewRender:",e,t),i._swapNewRender(e),i.trigger("rendered",i)},handleWarning:function(e){var t=this.views.length,i=this.model.get("element_count");if(i&&i!==t){var n=(0,f.default)("displaying only "+t+" of "+i+" items");e.find(".elements-warning").html('<div class="warningmessagesmall">'+n+"</div>")}},_filterCollection:function(){return this.model.getVisibleContents()},_getItemViewClass:function(e){switch(e.get("element_type")){case"hda":return this.DatasetDCEViewClass;case"dataset_collection":return this.getNestedDCDCEViewClass()}throw new TypeError("Unknown element type:",e.get("element_type"))},_getItemViewOptions:function(t){var i=p.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,hasUser:this.hasUser,foldoutStyle:this.foldoutStyle})},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}}),this},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$("> .controls").add(this.$list()).hide(),e.parentName=this.model.get("name"),this.$el.append(e.render().$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.render()},events:{"click .navigation .back":"close"},close:function(e){this.remove(),this.trigger("close")},toString:function(){return"CollectionView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=function(t,i){var n=a(i.model);return'\n        <div class="controls">\n            <div class="navigation">\n            <a class="back" href="javascript:void(0)">\n                <span class="fa fa-icon fa-angle-left"></span>\n                '+(0,f.default)("Back to ")+"\n                "+e.escape(i.parentName)+'\n            </a>\n            </div>\n            <div class="title">\n                <div class="name">'+(e.escape(t.name)||e.escape(t.element_identifier))+'</div>\n                <div class="subtitle">\n                    '+n+'\n                </div>\n            </div>\n            <div class="elements-warning">\n            </div>\n            <div class="tags-display"></div>\n            <div class="actions">\n                <a class="download-btn icon-btn" href="'+i.downloadUrl+'"\n                   title="" download="" data-original-title="Download Collection">\n                   <span class="fa fa-floppy-o"></span>\n                </a>\n            </div>\n        </div>'};return e.extend(e.clone(p.prototype.templates),{controls:t})}(),t.default={collectionTypeDescription:s,collectionDescription:a,CollectionView:m}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(16),o=s(a),l=i(66),r=s(l),d=i(39),c=s(d),u=i(124),h=s(u),f=i(21),p=s(f),m=i(5),g=s(m),_=i(3),v=s(_),y=r.default.DatasetListItemView,w=y.extend({initialize:function(e){y.prototype.initialize.call(this,e),this.hasUser=e.hasUser,this.purgeAllowed=e.purgeAllowed||!1,this.tagsEditorShown=e.tagsEditorShown||!1,this.annotationEditorShown=e.annotationEditorShown||!1},_renderPrimaryActions:function(){var e=y.prototype._renderPrimaryActions.call(this);return this.model.get("state")===o.default.NOT_VIEWABLE?e:y.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){var t=this;if(this.model.get("state")===o.default.DISCARDED||!this.model.get("accessible"))return null;var i=this.model.get("purged"),n=this.model.get("deleted"),s={title:(0,v.default)("Edit attributes"),href:Galaxy.root+"datasets/edit?dataset_id="+this.model.attributes.id,faIcon:"fa-pencil",classes:"edit-btn",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/edit",{dataset_id:t.model.attributes.id}))}};return n||i?(s.disabled=!0,i?s.title=(0,v.default)("Cannot edit attributes of datasets removed from disk"):n&&(s.title=(0,v.default)("Undelete dataset to edit attributes"))):e.contains([o.default.UPLOAD,o.default.NEW],this.model.get("state"))&&(s.disabled=!0,s.title=(0,v.default)("This dataset is not yet editable")),(0,p.default)(s)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var e=this,t=this.model.isDeletedOrPurged();return(0,p.default)({title:t?(0,v.default)("Dataset is already deleted"):(0,v.default)("Delete"),disabled:t,faIcon:"fa-times",classes:"delete-btn",onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},_renderDetails:function(){var t=y.prototype._renderDetails.call(this),i=this.model.get("state");return!this.model.isDeletedOrPurged()&&e.contains([o.default.OK,o.default.FAILED_METADATA],i)&&(this._renderTags(t),this._renderAnnotation(t),this._makeDbkeyEditLink(t)),this._setUpBehaviors(t),t},_renderToolHelpButton:function(){var e=this.model.attributes.dataset_id,t=this.model.attributes.creating_job,i=this,s=function(t){var s='<div id="thdiv-'+e+'" class="toolhelp">';t.name&&t.help?(s+="<strong>Tool help for "+t.name+"</strong><hr/>",s+=t.help):s+="<strong>Tool help is unavailable for this dataset.</strong><hr/>",s+="</div>",i.$el.find(".details").append(n.parseHTML(s))},a=function(e){n.ajax({url:Galaxy.root+"api/tools/"+e.tool_id+"/build"}).done(function(e){s(e)}).fail(function(){s({})})};return null===Galaxy.user.id?null:(0,p.default)({title:(0,v.default)("Tool Help"),classes:"icon-btn",href:"#",faIcon:"fa-question",onclick:function(){i.$el.find(".toolhelp").length>0?i.$el.find(".toolhelp").toggle():n.ajax({url:Galaxy.root+"api/jobs/"+t}).done(function(e){a(e)}).fail(function(){console.log('Failed at recovering job information from the  Galaxy API for job id "'+t+'".')})}})},_renderSecondaryActions:function(){var e=y.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case o.default.UPLOAD:case o.default.NOT_VIEWABLE:return e;case o.default.ERROR:return e.unshift(this._renderErrButton()),e.concat([this._renderRerunButton(),this._renderToolHelpButton()]);case o.default.OK:case o.default.FAILED_METADATA:return e.concat([this._renderRerunButton(),this._renderVisualizationsButton(),this._renderToolHelpButton()])}return e.concat([this._renderRerunButton(),this._renderToolHelpButton()])},_renderErrButton:function(){var e=this;return(0,p.default)({title:(0,v.default)("View or report this error"),href:Galaxy.root+"datasets/error?dataset_id="+this.model.attributes.id,classes:"report-error-btn",faIcon:"fa-bug",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("datasets/error",{dataset_id:e.model.attributes.id}))}})},_renderRerunButton:function(){var e=this.model.get("creating_job");if(this.model.get("rerunnable"))return(0,p.default)({title:(0,v.default)("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("/",{job_id:e}))}})},_renderVisualizationsButton:function(){var t=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||e.isEmpty(t))return null;if(!e.isObject(t[0]))return this.warn("Visualizations have been switched off"),null;var i=n(this.templates.visualizations(t,this));return i.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(i.find(".visualization-link").addBack(".visualization-link")),i},_addScratchBookFn:function(e){e.click(function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,v.default)("Visualization"),url:n(this).attr("href")}),e.preventDefault(),e.stopPropagation())})},_renderTags:function(e){if(this.hasUser){var t=this;this.tagsEditor=new c.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.tagsEditorShown=!0},onhide:function(){t.tagsEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(e){if(this.hasUser){var t=this;this.annotationEditor=new h.default.AnnotationEditor({model:this.model,el:e.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.annotationEditorShown=!0},onhide:function(){t.annotationEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(e){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var t=n('<a class="value">?</a>').attr("href",this.model.urls.edit).attr("target","_top");e.find(".dbkey .value").replaceWith(t)}},events:e.extend(e.clone(y.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(e){this.trigger("edit",this,e)},"click .delete-btn":function(e){this.trigger("delete",this,e)},"click .rerun-btn":function(e){this.trigger("rerun",this,e)},"click .report-err-btn":function(e){this.trigger("report-err",this,e)},"click .visualization-btn":function(e){this.trigger("visualize",this,e)},"click .dbkey a":function(e){this.trigger("edit",this,e)}}),_clickUndeleteLink:function(e){return this.model.undelete(),!1},_clickPurgeLink:function(e){return confirm((0,v.default)("This will permanently remove the data in your dataset. Are you sure?"))&&this.model.purge(),!1},toString:function(){return"HDAEditView("+(this.model?""+this.model:"(no model)")+")"}});w.prototype.templates=function(){var t=e.extend({},y.prototype.templates.warnings,{failed_metadata:g.default.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','<div class="failed_metadata-warning warningmessagesmall">',(0,v.default)("An error occurred setting the metadata for this dataset"),'<br /><a href="<%- dataset.urls.edit %>" target="_top">',(0,v.default)("Set it manually or retry auto-detection"),"</a>","</div>","<% } %>"],"dataset"),deleted:g.default.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,v.default)("This dataset has been deleted"),'<br /><a class="undelete-link" href="javascript:void(0);">',(0,v.default)("Undelete it"),"</a>","<% if( view.purgeAllowed ){ %>",'<br /><a class="purge-link" href="javascript:void(0);">',(0,v.default)("Permanently remove it from disk"),"</a>","<% } %>","</div>","<% } %>"],"dataset")}),i=g.default.wrapTemplate(["<% if( visualizations.length === 1 ){ %>",'<a class="visualization-link icon-btn" href="<%- visualizations[0].href %>"',' target="<%- visualizations[0].target %>" title="',(0,v.default)("Visualize in"),' <%- visualizations[0].html %>">','<span class="fa fa-bar-chart-o"></span>',"</a>","<% } else { %>",'<div class="visualizations-dropdown dropdown icon-btn">','<a data-toggle="dropdown" title="',(0,v.default)("Visualize"),'">','<span class="fa fa-bar-chart-o"></span>',"</a>",'<ul class="dropdown-menu" role="menu">',"<% _.each( visualizations, function( visualization ){ %>",'<li><a class="visualization-link" href="<%- visualization.href %>"',' target="<%- visualization.target %>">',"<%- visualization.html %>","</a></li>","<% }); %>","</ul>","</div>","<% } %>"],"visualizations");return e.extend({},y.prototype.templates,{warnings:t,visualizations:i})}(),t.default={DatasetListItemEdit:w}}).call(t,i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(5),o=s(a),l=i(3),r=s(l);i(20);var d=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(e){e=e||{},this.tooltipConfig=e.tooltipConfig||{placement:"bottom"},this.listenTo(this.model,"change:annotation",function(){this.render()}),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.$el.html(this._template()),this.$annotation().make_text_editable({use_textarea:!0,on_finish:function(t){e.$annotation().text(t),e.model.save({annotation:t},{silent:!0}).fail(function(){e.$annotation().text(e.model.previous("annotation"))})}}),this},_template:function(){var 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system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be.  You can also upload compressed files, which will automatically be decompressed."}},list_extensions:[],list_genomes:[],initialize:function(e){var t=this;this.options=l.default.merge(e,this.options),this.ui_button=new f.default.View({onclick:function(e){e.preventDefault(),t.show()},onunload:function(){var e=t.ui_button.model.get("percentage",0);if(e>0&&e<100)return"Several uploads are queued."}}),this.setElement(this.ui_button.$el);var t=this;l.default.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(e){for(var i in e)t.list_extensions.push({id:e[i].extension,text:e[i].extension,description:e[i].description,description_url:e[i].description_url,composite_files:e[i].composite_files});t.list_extensions.sort(function(e,t){var i=e.text&&e.text.toLowerCase(),n=t.text&&t.text.toLowerCase();return i>n?1:i<n?-1:0}),t.options.datatypes_disable_auto||t.list_extensions.unshift(t.options.auto)}}),l.default.get({url:Galaxy.root+"api/genomes",success:function(e){for(var i in e)t.list_genomes.push({id:e[i][1],text:e[i][0]});t.list_genomes.sort(function(e,i){return e.id==t.options.default_genome?-1:i.id==t.options.default_genome?1:e.text>i.text?1:e.text<i.text?-1:0})}})},show:function(){var e=this;if(!Galaxy.currHistoryPanel||!Galaxy.currHistoryPanel.model)return void window.setTimeout(function(){e.show()},500);this.current_user=Galaxy.user.id,this.modal||(this.tabs=new u.default.View,this.default_view=new m.default(this),this.tabs.add({id:"regular",title:(0,a.default)("Regular"),$el:this.default_view.$el}),this.composite_view=new _.default(this),this.tabs.add({id:"composite",title:(0,a.default)("Composite"),$el:this.composite_view.$el}),this.collection_view=new y.default(this),this.tabs.add({id:"collection",title:(0,a.default)("Collection"),$el:this.collection_view.$el}),this.modal=new d.default.View({title:(0,a.default)("Download from web or upload from 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t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$uploadbox.addClass("highlight")},ondragleave:function(){t.$uploadbox.removeClass("highlight")}}),this.ftp=new v.default.View({title:(0,l.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new w.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t._changeExtension(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new g.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new w.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t._changeGenome(e)}}),this.loader=new $.default({$container:this.$uploadbox,collection:this.collection,new_content:function(e){var i=new h.default(t,{model:e});return t.$uploadtable.find("> tbody:first").append(i.$el),i.render(),i}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this.render()},render:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running,s=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[n?"enable":"disable"](),this.btnFtp[n?"enable":"disable"](),this.btnCreate[n?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[s?"show":"hide"](),this.$(".upload-helper")[s?"hide":"show"]()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new c.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t});this.render(),this.collection.add(i)},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"success"}),this.ui_button.model.set("percentage",this._uploadPercentage(100,i.get("file_size"))),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.success++,this.render(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this.render()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this.render()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this.render()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(0!=this.counter.announce&&0==this.counter.running){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this._uploadFtp(),this.uploadbox.start(),this.render()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){if(0==this.counter.running){this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this.render()}},_changeExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},_changeGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_uploadFtp:function(){var e=this,t=[];this.collection.each(function(i){"queued"==i.get("status")&&"ftp"==i.get("file_mode")&&(e.uploadbox.remove(i.id),t.push(i))}),t.length>0&&s.uploadpost({data:this.app.toData(t),url:this.app.options.nginx_upload_path,success:function(i){n.each(t,function(t){e._eventSuccess(t.id)})},error:function(i){n.each(t,function(t){e._eventError(t.id,i)})}})},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Type</th><th>Genome</th><th>Settings</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Type (set all):</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=a(r),c=i(29),u=(a(c),i(54)),h=a(u),f=i(15),p=a(f),m=i(10),g=a(m);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$settings=this.$(".upload-settings"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new p.default.View({title:(0,l.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});var s=this.app.select_genome.value(),a=this.app.select_extension.value();this.select_genome=new g.default.View({css:"upload-genome",data:i.app.list_genomes,container:this.$(".upload-genome"),value:s,onchange:function(e){i.model.set("genome",e)}}),this.select_extension=new g.default.View({css:"upload-extension",data:i.app.list_extensions,container:this.$(".upload-extension"),value:a,onchange:function(e){i.model.set("extension",e)}}),this.model.set({genome:s,extension:a}),this.$symbol.on("click",function(){i._removeRow()}),this.$(".upload-extension-info").on("click",function(e){i.app.showExtensionInfo({$el:n(e.target),title:i.select_extension.text(),extension:i.select_extension.value()})}).on("mousedown",function(e){e.preventDefault()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:genome",function(){i._refreshGenome()}),this.listenTo(this.model,"change:extension",function(){i._refreshExtension()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()})},render:function(){this._refreshType(),this._refreshPercentage(),this._refreshStatus(),this._refreshInfo(),this._refreshGenome(),this._refreshExtension(),this._refreshFileSize()},remove:function(){this.select_genome.remove(),this.select_extension.remove(),e.View.prototype.remove.apply(this)},_refreshType:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(d.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshExtension:function(){this.select_extension.value(this.model.get("extension"))},_refreshGenome:function(){this.select_genome.value(this.model.get("genome"))},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),t?(this.select_genome.enable(),this.select_extension.enable()):(this.select_genome.disable(),this.select_extension.disable()),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(d.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-extension" style="float: left;"/>&nbsp;&nbsp<div class="upload-extension-info upload-icon-button fa fa-search"/></td><td><div class="upload-genome"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,i,n){Object.defineProperty(t,"__esModule",{value:!0}),t.default=e.View.extend({initialize:function(e){this.$container=e.$container,this.collection=e.collection,this.new_content=e.new_content,this.max=e.max||50,this.content_list={},this.$message=i("<div/>").addClass("ui-limitloader").append("...only the first "+this.max+" entries are visible."),this.$container.append(this.$message),this.listenTo(this.collection,"reset",this._reset,this),this.listenTo(this.collection,"add",this._refresh,this),this.listenTo(this.collection,"remove",this._remove,this)},_done:function(){var e=n.size(this.content_list)>this.max;return this.$message[e?"show":"hide"](),e},_reset:function(){n.each(this.content_list,function(e){e.remove()}),this.content_list={},this.$message.hide()},_remove:function(e){var t=e.id,i=this.content_list[t];i&&(i.remove(),delete this.content_list[t]),this._refresh()},_refresh:function(){if(!this._done())for(var e in this.collection.models){var t=this.collection.models[e];this.content_list[t.id];if(!this.content_list[t.id]){var i=this.new_content(t);if(this.content_list[t.id]=i,this._done())break}}}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=(a(r),i(29)),c=a(d),u=i(247),h=a(u),f=i(56),p=a(f),m=i(15),g=(a(m),i(10)),_=a(g),v=i(6),y=a(v);t.default=e.View.extend({collection:new c.default.Collection,initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnStart=new y.default.Button({title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnClose=new y.default.Button({title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.select_extension=new _.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return e.composite_files}),onchange:function(e){t.collection.reset();var i=n.findWhere(t.list_extensions,{id:e});i&&i.composite_files&&n.each(i.composite_files,function(e){t.collection.add({id:t.collection.size(),file_desc:e.description||e.name})})}}),this.$(".upload-footer-extension-info").on("click",function(e){new p.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new _.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome}),this.listenTo(this.collection,"add",function(e){t._eventAnnounce(e)}),this.listenTo(this.collection,"change add",function(){t.render()}),this.select_extension.options.onchange(this.select_extension.value()),this.render()},render:function(){var e=this.collection.first();e&&"running"==e.get("status")?(this.select_genome.disable(),this.select_extension.disable()):(this.select_genome.enable(),this.select_extension.enable()),this.collection.where({status:"ready"}).length==this.collection.length&&this.collection.length>0?(this.btnStart.enable(),this.btnStart.$el.addClass("btn-primary")):(this.btnStart.disable(),this.btnStart.$el.removeClass("btn-primary")),this.$(".upload-table")[this.collection.length>0?"show":"hide"]()},_eventAnnounce:function(e){var t=new h.default(this,{model:e});this.$(".upload-table > tbody:first").append(t.$el),this.$(".upload-table")[this.collection.length>0?"show":"hide"](),t.render()},_eventStart:function(){var e=this;this.collection.each(function(t){t.set({genome:e.select_genome.value(),extension:e.select_extension.value()})}),s.uploadpost({url:this.app.options.nginx_upload_path,data:this.app.toData(this.collection.filter()),success:function(t){e._eventSuccess(t)},error:function(t){e._eventError(t)},progress:function(t){e._eventProgress(t)}})},_eventProgress:function(e){this.collection.each(function(t){t.set("percentage",e)})},_eventSuccess:function(e){this.collection.each(function(e){e.set("status","success")}),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e){this.collection.each(function(t){t.set({status:"error",info:e})})},_template:function(){return'<div class="upload-view-composite"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th/><th/><th>Description</th><th>Name</th><th>Size</th><th>Settings</th><th>Status</th></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Composite Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome/Build:</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=a(r),c=i(54),u=a(c),h=i(55),f=a(h),p=i(15),m=a(p),g=i(6),_=a(g),v=i(10);a(v);i(57),t.default=e.View.extend({status_classes:{init:"upload-mode fa fa-exclamation text-primary",ready:"upload-mode fa fa-check text-success",running:"upload-mode fa fa-spinner fa-spin",success:"upload-mode fa fa-check",error:"upload-mode fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template()),this.$source=this.$(".upload-source"),this.$settings=this.$(".upload-settings"),this.$status=this.$(".upload-status"),this.$text=this.$(".upload-text"),this.$text_content=this.$(".upload-text-content"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$file_name=this.$(".upload-file-name"),this.$file_desc=this.$(".upload-file-desc"),this.$file_size=this.$(".upload-file-size"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.uploadinput=this.$el.uploadinput({ondragover:function(){i.model.get("enabled")&&i.$el.addClass("warning")},ondragleave:function(){i.$el.removeClass("warning")},onchange:function(e){"running"!=i.model.get("status")&&e&&e.length>0&&(i.model.reset({file_data:e[0],file_name:e[0].name,file_size:e[0].size,file_mode:e[0].mode||"local"}),i._refreshReady())}}),this.button_menu=new _.default.ButtonMenu({icon:"fa-caret-down",title:(0,l.default)("Select"),pull:"left"}),this.$source.append(this.button_menu.$el),this.button_menu.addMenu({icon:"fa-laptop",title:(0,l.default)("Choose local file"),onclick:function(){i.uploadinput.dialog()}}),this.app.ftp_upload_site&&this.button_menu.addMenu({icon:"fa-folder-open-o",title:(0,l.default)("Choose FTP file"),onclick:function(){i._showFtp()}}),this.button_menu.addMenu({icon:"fa-edit",title:"Paste/Fetch data",onclick:function(){i.model.reset({file_mode:"new",file_name:"New File"})}}),this.ftp=new m.default.View({title:"Choose FTP file:",container:this.$source.find(".ui-button-menu"),placement:"right"}),this.settings=new m.default.View({title:(0,l.default)("Upload configuration"),container:this.$settings,placement:"bottom"}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length}),i._refreshReady()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_name",function(){i._refreshFileName()}),this.listenTo(this.model,"change:file_mode",function(){i._refreshMode()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){this.$el.attr("id","upload-row-"+this.model.id),this.$file_name.html(s.escape(this.model.get("file_name")||"-")),this.$file_desc.html(this.model.get("file_desc")||"Unavailable"),this.$file_size.html(d.default.bytesToString(this.model.get("file_size"))),this.$status.removeClass().addClass(this.status_classes.init)},remove:function(){e.View.prototype.remove.apply(this)},_refreshReady:function(){this.app.collection.each(function(e){e.set("status",e.get("file_size")>0&&"ready"||"init")})},_refreshMode:function(){"new"==this.model.get("file_mode")?(this.height=this.$el.height(),this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$text_content.val("").trigger("keyup")):(this.$el.height(this.height),this.$text.hide())},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));0!=e?this.$progress_bar.css({width:e+"%"}):(this.$progress_bar.addClass("no-transition"),this.$progress_bar.css({width:"0%"}),this.$progress_bar[0].offsetHeight,this.$progress_bar.removeClass("no-transition")),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$status.removeClass().addClass(this.status_classes[e]),this.model.set("enabled","running"!=e),this.$text_content.attr("disabled",!this.model.get("enabled")),this.$el.removeClass("success danger warning"),"running"!=e&&"ready"!=e||this.model.set("percentage",0),this.$source.find(".button")["running"==e?"addClass":"removeClass"]("disabled"),"success"==e&&(this.$el.addClass("success"),this.model.set("percentage",100),this.$percentage.html("100%")),"error"==e?(this.$el.addClass("danger"),this.model.set("percentage",0),this.$info_progress.hide(),this.$info_text.show()):(this.$info_progress.show(),this.$info_text.hide())},_refreshFileName:function(){this.$file_name.html(this.model.get("file_name")||"-")},_refreshFileSize:function(){this.$file_size.html(d.default.bytesToString(this.model.get("file_size")))},_showFtp:function(){if(this.ftp.visible)this.ftp.hide();else{var e=this;this.ftp.empty(),this.ftp.append(new f.default({ftp_upload_site:this.app.ftp_upload_site,onchange:function(t){e.ftp.hide(),"running"!=e.model.get("status")&&t&&(e.model.reset({file_mode:"ftp",file_name:t.path,file_size:t.size,file_path:t.path}),e._refreshReady())}}).$el),this.ftp.show()}},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new u.default(this).$el),this.settings.show())},_template:function(){return'<tr class="upload-row"><td><div class="upload-source"/><div class="upload-text-column"><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-status"/></td><td><div class="upload-file-desc upload-title"/></td><td><div class="upload-file-name upload-title"/></td><td><div class="upload-file-size upload-size"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=(a(r),i(29)),c=a(d),u=i(249),h=a(u),f=i(55),p=a(f),m=i(56),g=a(m),_=i(15),v=a(_),y=i(10),w=a(y),b=i(6),x=a(b),C=i(58);a(C);i(57),t.default=e.View.extend({upload_size:0,collection:new c.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ui_button=e.ui_button,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnLocal=new x.default.Button({id:"btn-local",title:(0,l.default)("Choose local files"),onclick:function(){t.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new x.default.Button({id:"btn-ftp",title:(0,l.default)("Choose FTP files"),onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnBuild=new x.default.Button({id:"btn-build",title:(0,l.default)("Build"),onclick:function(){t._eventBuild()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,l.default)("Pause"),onclick:function(){t._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,l.default)("Reset"),onclick:function(){t._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnBuild,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$(".upload-box").uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$(".upload-box").addClass("highlight")},ondragleave:function(){t.$(".upload-box").removeClass("highlight")}}),this.ftp=new v.default.View({title:(0,l.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new w.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t.updateExtension(e)}}),this.collectionType="list",this.select_collection=new w.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-collection-type"),data:[{id:"list",text:"List"},{id:"paired",text:"Paired"},{id:"list:paired",text:"List of Pairs"}],value:"list",onchange:function(e){t.updateCollectionType(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new g.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new w.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t.updateGenome(e)}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this._updateScreen()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new c.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t,extension:this.select_extension.value(),genome:this.select_genome.value()});this.collection.add(i);var n=new h.default(this,{model:i});this.$(".upload-table > tbody:first").append(n.$el),this._updateScreen(),n.render()},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=n.pluck(t.outputs,"hid"),s=this.collection.get(e);s.set({percentage:100,status:"success",hids:i}),this.ui_button.model.set("percentage",this._uploadPercentage(100,s.get("file_size"))),this.upload_completed+=100*s.get("file_size"),this.counter.announce--,this.counter.success++,this._updateScreen(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this._updateScreen()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this._updateScreen()},_eventBuild:function(){var e=[];n.forEach(this.collection.models,function(t){e.push.apply(e,t.get("hids"))});var t=n.map(e,function(e){return Galaxy.currHistoryPanel.collection.getByHid(e)}),i=new Galaxy.currHistoryPanel.collection.constructor(t);i.historyId=Galaxy.currHistoryPanel.collection.historyId,Galaxy.currHistoryPanel.buildCollection(this.collectionType,i,!0),this.counter.running=0,this._updateScreen(),this._eventReset(),this.app.modal.hide()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this._updateScreen()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(!(0==this.counter.announce||this.counter.running>0)){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this.uploadbox.start(),this._updateScreen()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){0==this.counter.running&&(this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this._updateScreen())},updateExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},updateCollectionType:function(e){this.collectionType=e},updateGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_updateScreen:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running&&0==this.counter.announce&&this.counter.success>0&&0==this.counter.error,s=0==this.counter.running,a=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnBuild[n?"enable":"disable"](),this.btnBuild.$el[n?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[s?"enable":"disable"](),this.btnFtp[s?"enable":"disable"](),this.btnCreate[s?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[a?"show":"hide"](),this.$(".upload-helper")[a?"hide":"show"]()},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title-compressed">Collection Type:</span><span class="upload-footer-collection-type"/><span class="upload-footer-title-compressed">File Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title-compressed">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=a(r),c=i(29),u=(a(c),i(54)),h=a(u),f=i(15),p=a(f),m=i(10);a(m);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title-extended"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new p.default.View({title:(0,l.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});this.app.select_genome.value(),this.app.select_extension.value();this.$symbol.on("click",function(){i._removeRow()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(d.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(d.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title-extended"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(6),a=n(s),o=i(251),l=n(o),r=i(252),d=n(r),c=i(3),u=n(c),h=e.View.extend({initialize:function(t,i){var n=this;this.userIsAnonymous=Galaxy.user.isAnonymous(),this.allow_user_dataset_purge=i.config.allow_user_dataset_purge,this.root=i.root,this.historyView=new d.default.CurrentHistoryView({className:d.default.CurrentHistoryView.prototype.className+" middle",purgeAllowed:this.allow_user_dataset_purge,linkTarget:"galaxy_main"}),Galaxy.currHistoryPanel=this.historyView,Galaxy.currHistoryPanel.listenToGalaxy(Galaxy),this.buttonRefresh=new a.default.ButtonLink({id:"history-refresh-button",title:(0,u.default)("Refresh history"),cls:"panel-header-button",icon:"fa fa-refresh",onclick:function(){n.historyView.loadCurrentHistory()}}),this.buttonOptions=new a.default.ButtonLink({id:"history-options-button",title:(0,u.default)("History options"),cls:"panel-header-button",target:"galaxy_main",icon:"fa fa-cog",href:this.root+"root/history_options"}),this.buttonViewMulti=new a.default.ButtonLink({id:"history-view-multi-button",title:(0,u.default)("View all histories"),cls:"panel-header-button",icon:"fa fa-columns",href:this.root+"history/view_multiple"}),this.model=new e.Model({cls:"history-right-panel",title:(0,u.default)("History"),buttons:[this.buttonRefresh,this.buttonOptions,this.buttonViewMulti]}),this.setElement(this._template()),this.historyView.setElement(this.$el),this.historyView.connectToQuotaMeter(Galaxy.quotaMeter),this.historyView.loadCurrentHistory(),Galaxy.listenTo(this.historyView,"history-size-change",function(){Galaxy.user.fetch({url:Galaxy.user.urlRoot()+"/"+(Galaxy.user.id||"current")})})},render:function(){this.optionsMenu=(0,l.default)(this.buttonOptions.$el,{anonymous:this.userIsAnonymous,purgeAllowed:this.allow_user_dataset_purge,root:this.root}),this.buttonViewMulti.$el[this.userIsAnonymous?"hide":"show"]()},_template:function(e){return['<div id="current-history-panel" class="history-panel middle"/>'].join("")},toString:function(){return"historyPanel"}});t.default=h}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}function a(e,t,i){return n.clone(m).filter(function(n){return!(e&&!n.anon)&&(!(!t&&n.purge)&&(n.href&&(n.href=i+n.href,n.target=n.target||"galaxy_main"),n.confirm&&(n.func=function(){confirm(n.confirm)&&(galaxy_main.location=n.href)}),!0))})}Object.defineProperty(t,"__esModule",{value:!0});var o=i(42),l=s(o),r=i(112),d=s(r),c=i(5),u=(s(c),i(3)),h=s(u),f=i(34),p=s(f),m=[{html:(0,h.default)("History Lists"),header:!0},{html:(0,h.default)("Saved Histories"),href:"histories/list",target:"_top"},{html:(0,h.default)("Histories Shared with Me"),href:"histories/list_shared",target:"_top"},{html:(0,h.default)("Current History"),header:!0,anon:!0},{html:(0,h.default)("Create New"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.createNewHistory()}},{html:(0,h.default)("Copy History"),func:function(){(0,d.default)(Galaxy.currHistoryPanel.model).done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Share or Publish"),href:"history/sharing"},{html:(0,h.default)("Show Structure"),href:"history/display_structured",anon:!0},{html:(0,h.default)("Extract Workflow"),href:"workflow/build_from_current_history"},{html:(0,h.default)("Delete"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history?"))&&Galaxy.currHistoryPanel.model._delete().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Permanently"),purge:!0,anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history permanently? This cannot be undone."))&&Galaxy.currHistoryPanel.model.purge().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Dataset Actions"),header:!0,anon:!0},{html:(0,h.default)("Copy Datasets"),href:"dataset/copy_datasets"},{html:(0,h.default)("Dataset Security"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/permissions?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Resume Paused Jobs"),href:"history/resume_paused_jobs?current=True",anon:!0},{html:(0,h.default)("Collapse Expanded Datasets"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.collapseAll()}},{html:(0,h.default)("Unhide Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really unhide all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"unhide"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"delete"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Purge Deleted Datasets"),confirm:(0,h.default)("Really delete all deleted datasets permanently? This cannot be undone."),href:"history/purge_deleted_datasets",purge:!0,anon:!0},{html:(0,h.default)("Downloads"),header:!0},{html:(0,h.default)("Export Tool Citations"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/citations?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Export History to File"),href:"history/export_archive?preview=True",anon:!0},{html:(0,h.default)("Other Actions"),header:!0},{html:(0,h.default)("Import from File"),href:"histories/import",target:"_top"}];p.default.add({url:"api/webhooks/history-menu/all",async:!1,callback:function(t){var i=[];e.each(t.models,function(e,t){var n=t.toJSON();n.activate&&i.push({html:(0,h.default)(n.config.title),anon:!0})}),i.length>0&&(i.unshift({html:(0,h.default)("Webhooks"),header:!0}),e.merge(m,i))}});var g=function(e,t){t=t||{};var i=void 0===t.anonymous||t.anonymous,n=t.purgeAllowed||!1,s=a(i,n,Galaxy.root);return new l.default(e,s)};t.default=g}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(62),l=(a(o),i(254)),r=a(l),d=i(5),c=a(d),u=i(3),h=a(u),f=c.default.SessionStorageModel.extend({defaults:{tagsEditorShown:!1,annotationEditorShown:!1,scrollPosition:0},toString:function(){return"HistoryViewPrefs("+JSON.stringify(this.toJSON())+")"}});f.storageKey=function(){return"history-panel"};var p=r.default.HistoryViewEdit,m=p.extend({className:p.prototype.className+" current-history-panel",HDCAViewClass:p.prototype.HDCAViewClass.extend({foldoutStyle:"drilldown"}),emptyMsg:[(0,h.default)("This history is empty"),". ",(0,h.default)("You can "),'<a class="uploader-link" href="javascript:void(0)">',(0,h.default)("load your own data"),"</a>",(0,h.default)(" or "),'<a class="get-data-link" href="javascript:void(0)">',(0,h.default)("get data from an external source"),"</a>"].join(""),initialize:function(t){t=t||{},this.preferences=new f(e.extend({id:f.storageKey()},e.pick(t,e.keys(f.prototype.defaults)))),p.prototype.initialize.call(this,t),this.panelStack=[],this.currentContentId=t.currentContentId||null},_setUpListeners:function(){p.prototype._setUpListeners.call(this);var e=this;this.on("new-model",function(){e.preferences.set("scrollPosition",0)})},loadCurrentHistory:function(){return this.loadHistory(null,{url:Galaxy.root+"history/current_history_json"})},switchToHistory:function(e,t){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to switch histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(e,{url:Galaxy.root+"history/set_as_current?id="+e})},createNewHistory:function(e){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to create histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(null,{url:Galaxy.root+"history/create_new_current"})},setModel:function(e,t,i){return p.prototype.setModel.call(this,e,t,i),this.model&&this.model.id&&(this.log("checking for updates"),this.model.checkForUpdates()),this},_setUpModelListeners:function(){return p.prototype._setUpModelListeners.call(this),this.listenTo(this.model,{"change:nice_size change:size":function(){this.trigger("history-size-change",this,this.model,arguments)},"change:id":function(){this.once("loading-done",function(){this.model.checkForUpdates()})}})},_setUpCollectionListeners:function(){p.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,"state:ready",function(e,t,i){e.get("visible")||this.collection.storage.includeHidden()||this.removeItemView(e)})},_setUpBehaviors:function(t){t=t||this.$el;var i=this;return p.prototype._setUpBehaviors.call(i,t),this._debouncedScrollCaptureHandler||(this._debouncedScrollCaptureHandler=e.debounce(function(){i.$el.is(":visible")&&i.preferences.set("scrollPosition",n(this).scrollTop())},40)),i.$scrollContainer(t).off("scroll",this._debouncedScrollCaptureHandler).on("scroll",this._debouncedScrollCaptureHandler),i},_buildNewRender:function(){if(!this.model)return n();var e=p.prototype._buildNewRender.call(this);return e.find(".search").prependTo(e.find("> .controls")),this._renderQuotaMessage(e),e},_renderQuotaMessage:function(e){return e=e||this.$el,n(this.templates.quotaMsg({},this)).prependTo(e.find(".messages"))},_renderTags:function(e){var t=this;p.prototype._renderTags.call(t,e),t.preferences.get("tagsEditorShown")&&t.tagsEditor.toggle(!0),t.listenTo(t.tagsEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("tagsEditorShown",e.hidden)})},_renderAnnotation:function(e){var t=this;p.prototype._renderAnnotation.call(t,e),t.preferences.get("annotationEditorShown")&&t.annotationEditor.toggle(!0),t.listenTo(t.annotationEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("annotationEditorShown",e.hidden)})},_swapNewRender:function(t){p.prototype._swapNewRender.call(this,t);var i=this;return e.delay(function(){var e=i.preferences.get("scrollPosition");e&&i.scrollTo(e,0)},10),this},_attachItems:function(e){p.prototype._attachItems.call(this,e);var t=this;return t.currentContentId&&t._setCurrentContentById(t.currentContentId),this},addItemView:function(e,t,i){var n=p.prototype.addItemView.call(this,e,t,i);return n&&this.panelStack.length?this._collapseDrilldownPanel():n},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}})},setCurrentContent:function(e){this.$(".history-content.current-content").removeClass("current-content"),e?(e.$el.addClass("current-content"),this.currentContentId=e.model.id):this.currentContentId=null},_setCurrentContentById:function(e){var t=this.viewFromModelId(e)||null;this.setCurrentContent(t)},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$controls().add(this.$list()).hide(),e.parentName=this.model.get("name"),e.delegateEvents().render().$el.appendTo(this.$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.$controls().add(this.$list()).show()},events:e.extend(e.clone(p.prototype.events),{"click .uploader-link":function(e){Galaxy.upload.show(e)},"click .get-data-link":function(e){var t=n(".toolMenuContainer");t.parent().scrollTop(0),t.find('span:contains("Get Data")').click()}}),listenToGalaxy:function(t){this.listenTo(t,{"center-frame:load":function(t){var i=t.fullpath,n=null,s={display:/datasets\/([a-f0-9]+)\/display/,edit:/datasets\/([a-f0-9]+)\/edit/,report_error:/dataset\/errors\?id=([a-f0-9]+)/,rerun:/tool_runner\/rerun\?id=([a-f0-9]+)/,show_params:/datasets\/([a-f0-9]+)\/show_params/};e.find(s,function(t,s){return n=e.result(i.match(t),1)}),this._setCurrentContentById(n?"dataset-"+n:null)},"center-panel:load":function(e){this._setCurrentContentById()}})},connectToQuotaMeter:function(e){return e?(this.listenTo(e,"quota:over",this.showQuotaMessage),this.listenTo(e,"quota:under",this.hideQuotaMessage),this.on("rendered rendered:initial",function(){e&&e.isOverQuota()&&this.showQuotaMessage()}),this):this},clearMessages:function(t){var i=e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget);return i=i.not(".quota-message"),i.fadeOut(this.fxSpeed,function(){n(this).remove()}),this},showQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")&&e.slideDown(this.fxSpeed)},hideQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")||e.slideUp(this.fxSpeed)},unhideHidden:function(){var e=this;return confirm((0,h.default)("Really unhide all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{visible:!0}).done(function(){e.model.contents.includeHidden||e.renderItems()}):s.when()},deleteHidden:function(){var e=this;return confirm((0,h.default)("Really delete all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{deleted:!0,visible:!0}):s.when()},toString:function(){return"CurrentHistoryView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=c.default.wrapTemplate(['<div class="quota-message errormessage">',(0,h.default)("You are over your disk quota"),". ",(0,h.default)("Tool execution is on hold until your disk usage drops below your allocated quota"),".","</div>"],"history");return e.extend(e.clone(p.prototype.templates),{quotaMsg:t})}(),t.default={CurrentHistoryView:m}}).call(t,i(1),i(0),i(0))},function(e,t,i){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=i(2),s=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(t[i]=e[i]);return t.default=e,t}(n),a=i(116),o=function(e){return e&&e.__esModule?e:{default:e}}(a),l=["new","queued","running"],r=["error","deleted"],d=s.Model.extend({url:function(){return Galaxy.root+"api/histories/"+this.attributes.history_id+"/contents/dataset_collections/"+this.attributes.collection_id+"/jobs_summary"},hasDetails:function(){return this.has("populated_state")},new:function(){return!this.hasDetails()||"new"==this.get("populated_state")},errored:function(){return"error"===this.get("populated_state")||this.anyWithStates(r)},states:function(){return this.get("states")||{}},anyWithState:function(e){return(this.states()[e]||0)>0},anyWithStates:function(e){var t=this.states();for(var i in e)if((t[e[i]]||0)>0)return!0;return!1},numWithStates:function(e){var t=this.states(),i=0;for(var n in e)i+=t[e[n]]||0;return i},numInError:function(){return this.numWithStates(r)},running:function(){return this.anyWithState("running")},terminal:function(){return!this.new()&&!this.anyWithStates(l)},jobCount:function(){var e=this.states(),t=0;for(var i in e)t+=e[i];return t},toString:function(){return"JobStatesSummary(id="+this.get("id")+")"}}),c=s.Collection.extend({model:d,initialize:function(){this.updateTimeoutId=null,this.active=!0},url:function(){var e=this.models.filter(function(e){return!e.terminal()}),t=e.map(function(e){return e.get("id")}).join(","),i=e.map(function(e){return e.get("model")}).join(",");return Galaxy.root+"api/histories/"+this.historyId+"/jobs_summary?ids="+t+"&types="+i},monitor:function(){var e=this;if(this.clearUpdateTimeout(),this.active){var t=function(){e.updateTimeoutId=setTimeout(function(){e.monitor()},2e3)},i=this.models.filter(function(e){return!e.terminal()});if(i.length,!1){var n=i.map(function(e){return function(){return e.fetch()}});return new o.default.AjaxQueue(n).done(t)}i.length>0?this.fetch({remove:!1}).done(t):t()}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},toString:function(){return"JobStatesSummaryCollection()"}});t.default={JobStatesSummary:d,JobStatesSummaryCollection:c,FETCH_STATE_ON_ADD:!1}},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(255),l=a(o),r=i(63),d=(a(r),i(16)),c=(a(d),i(115)),u=a(c),h=i(257),f=a(h),p=i(258),m=a(p),g=i(39),_=a(g),v=i(124),y=a(v),w=i(58),b=a(w),x=i(261),C=a(x),$=i(262),k=a($),S=i(21),T=a(S),P=i(42),E=(a(P),i(5)),D=a(E),A=i(3),M=a(A);i(20);var I=l.default.HistoryView,L=I.extend({HDAViewClass:f.default.HDAListItemEdit,HDCAViewClass:m.default.HDCAListItemEdit,initialize:function(e){e=e||{},I.prototype.initialize.call(this,e),this.tagsEditor=null,this.dragItems=!0,this.annotationEditor=null,this.purgeAllowed=e.purgeAllowed||!1,this.annotationEditorShown=e.annotationEditorShown||!1,this.tagsEditorShown=e.tagsEditorShown||!1},_setUpListeners:function(){return I.prototype._setUpListeners.call(this),this.on({"droptarget:drop":function(e,t){this.dataDropped(t),this.dropTargetOff()},"view:attached view:removed":function(){this._renderCounts()},"search:loading-progress":this._renderSearchProgress,"search:searching":this._renderSearchFindings})},_setUpModelListeners:function(){return I.prototype._setUpModelListeners.call(this),this.listenTo(this.model,"change:size",this.updateHistoryDiskSize),this},_setUpCollectionListeners:function(){return I.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"change:deleted":this._handleItemDeletedChange,"change:visible":this._handleItemVisibleChange,"change:purged":function(e){this.model.fetch()},"fetching-deleted":function(e){this.$("> .controls .deleted-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-hidden":function(e){this.$("> .controls .hidden-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-deleted-done fetching-hidden-done":this._renderCounts}),this},_buildNewRender:function(){var e=I.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.user&&Galaxy.user.id&&Galaxy.user.id===this.model.get("user_id")&&(this._renderTags(e),this._renderAnnotation(e)),e):e},updateHistoryDiskSize:function(){this.$(".history-size").text(this.model.get("nice_size"))},renderItems:function(e){var t=I.prototype.renderItems.call(this,e);return this.searchFor?this._renderSearchFindings(e):this._renderCounts(e),t},_renderCounts:function(t){t=t instanceof e?t:this.$el;var i=this.templates.counts(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i)},_renderTags:function(e){var t=this;this.tagsEditor=new _.default.TagsEditor({model:this.model,el:e.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDATagEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDATagEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".controls .actions"))})},_renderAnnotation:function(e){var t=this;this.annotationEditor=new y.default.AnnotationEditor({model:this.model,el:e.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDAAnnotationEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDAAnnotationEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".controls .actions"))})},_setUpBehaviors:function(e){if(e=e||this.$el,I.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.model.get("user_id")){var t=this;e.find("> .controls .name").attr("title",(0,M.default)("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var i=t.model.get("name");e&&e!==i?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(i)}})}},multiselectActions:function(){var e=this,t=[{html:(0,M.default)("Hide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.hide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Unhide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.unhide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Delete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.delete;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Undelete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.undelete;e.getSelectedModels().ajaxQueue(t)}}];return e.purgeAllowed&&t.push({html:(0,M.default)("Permanently delete datasets"),func:function(){if(confirm((0,M.default)("This will permanently remove the data in your datasets. Are you sure?"))){var t=u.default.HistoryDatasetAssociation.prototype.purge;e.getSelectedModels().ajaxQueue(t)}}}),t=t.concat(e._collectionActions())},_collectionActions:function(){var e=this;return[{html:(0,M.default)("Build Dataset List"),func:function(){e.buildCollection("list")}},{html:(0,M.default)("Build Dataset Pair"),func:function(){e.buildCollection("paired")}},{html:(0,M.default)("Build List of Dataset Pairs"),func:function(){e.buildCollection("list:paired")}}]},buildCollection:function(e,t,i){var n,s=this,t=t||s.getSelectedModels(),i=i||!1;"list"==e?n=b.default.createListCollection:"paired"==e?n=C.default.createPairCollection:"list:paired"==e?n=k.default.createListOfPairsCollection:console.warn("Unknown collectionType encountered "+e),n(t,i).done(function(){s.model.refresh()})},_getItemViewOptions:function(e){var t=I.prototype._getItemViewOptions.call(this,e);return n.extend(t,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),t},_handleItemDeletedChange:function(e){e.get("deleted")?this._handleItemDeletion(e):this._handleItemUndeletion(e),this._renderCounts()},_handleItemDeletion:function(e){var t=this.model.get("contents_active");t.deleted+=1,t.active-=1,this.model.contents.includeDeleted||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUndeletion:function(e){var t=this.model.get("contents_active");t.deleted-=1,this.model.contents.includeDeleted||(t.active-=1),this.model.set("contents_active",t)},_handleItemVisibleChange:function(e){e.hidden()?this._handleItemHidden(e):this._handleItemUnhidden(e),this._renderCounts()},_handleItemHidden:function(e){var t=this.model.get("contents_active");t.hidden+=1,t.active-=1,this.model.contents.includeHidden||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUnhidden:function(e){var t=this.model.get("contents_active");t.hidden-=1,this.model.contents.includeHidden||(t.active-=1),this.model.set("contents_active",t)},toggleHDATagEditors:function(e,t){n.each(this.views,function(i){i.tagsEditor&&i.tagsEditor.toggle(e,t)})},toggleHDAAnnotationEditors:function(e,t){n.each(this.views,function(i){i.annotationEditor&&i.annotationEditor.toggle(e,t)})},events:n.extend(n.clone(I.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(e){this.toggleShowDeleted()},"click .toggle-hidden-link":function(e){this.toggleShowHidden()}}),_renderSearchProgress:function(e,t){var i=e+t;return this.$("> .controls .subtitle").html(["<i>",(0,M.default)("Searching "),i,"/",this.model.contentsShown(),"</i>"].join(""))},_renderSearchFindings:function(t){t=t instanceof e?t:this.$el;var i=this.templates.found(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i),this},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var e={dragenter:n.bind(this.dragenter,this),dragover:n.bind(this.dragover,this),dragleave:n.bind(this.dragleave,this),drop:n.bind(this.drop,this)},t=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),t]);for(var i in e)e.hasOwnProperty(i)&&t.on(i,e[i]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),s("<div/>").addClass("history-drop-target")},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),s("<div/>").addClass("history-drop-target-help").text((0,M.default)("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var e=this.$(".history-drop-target").get(0);for(var t in this._dropHandlers)this._dropHandlers.hasOwnProperty(t)&&e.off(t,this._dropHandlers[t]);return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(e){e.preventDefault(),e.stopPropagation()},dragleave:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(e){e.preventDefault();var t=this,i=e.originalEvent.dataTransfer,n=i.getData("text");i.dropEffect="move";try{n=JSON.parse(n)}catch(e){t.warn("error parsing JSON from drop:",n)}return t.trigger("droptarget:drop",e,n,t),!1},dataDropped:function(t){var i=this;return n.isObject(t)&&"HistoryDatasetAssociation"===t.model_class&&t.id?0!==i.contents.currentPage?i.contents.fetchPage(0).then(function(){return i.model.contents.copy(t.id)}):i.model.contents.copy(t.id):e.when()},toString:function(){return"HistoryViewEdit("+(this.model?this.model.get("name"):"")+")"}});L.prototype.templates=function(){var e=D.default.wrapTemplate(["<% var shown = Math.max( view.views.length, history.contents_active.active ) %>","<% if( shown ){ %>",'<span class="shown-count">',"<%- shown %> ",(0,M.default)("shown"),"</span>","<% } %>","<% if( history.contents_active.deleted ){ %>",'<span class="deleted-count">',"<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>","<% } else { %>","<%- history.contents_active.deleted %> ",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("deleted"),"</a>","<% } %>","</span>","<% } %>","<% if( history.contents_active.hidden ){ %>",'<span class="hidden-count">',"<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>","<%- history.contents_active.hidden %> ",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hidden"),"</a>","<% } %>","</span>","<% } %>"],"history"),t=D.default.wrapTemplate([(0,M.default)("Found")," <%- view.views.length %>, ","<% if( history.contents_active.deleted ){ %>","<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>, ","<% } else { %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("show deleted"),"</a>, ","<% } %>","<% } %>","<% if( history.contents_active.hidden ){ %>","<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("show hidden"),"</a>","<% } %>","<% } %>"],"history");return n.extend(n.clone(I.prototype.templates),{counts:e,found:t})}(),t.default={HistoryViewEdit:L}}).call(t,i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(117),o=s(a),l=i(62),r=s(l),d=i(63),c=s(d),u=i(64),h=(s(u),i(119)),f=s(h),p=i(121),m=s(p),g=i(24),_=(s(g),i(113)),v=s(_),y=i(21),w=s(y),b=i(5),x=s(b),C=i(3),$=s(C);i(118);var k=o.default.ModelListPanel,S=k.extend({_logNamespace:"history",HDAViewClass:f.default.HDAListItemView,HDCAViewClass:m.default.HDCAListItemView,collectionClass:c.default.HistoryContents,modelCollectionKey:"contents",tagName:"div",className:k.prototype.className+" history-panel",emptyMsg:(0,$.default)("This history is empty"),noneFoundMsg:(0,$.default)("No matching datasets found"),searchPlaceholder:(0,$.default)("search datasets"),initialize:function(e){k.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_createDefaultCollection:function(){return new this.collectionClass([],{history:this.model})},freeModel:function(){return k.prototype.freeModel.call(this),this.model&&this.model.stopPolling(),this},_setUpListeners:function(){k.prototype._setUpListeners.call(this),this.on({error:function(e,t,i,n,s){this.errorHandler(e,t,i,n,s)},"views:ready view:attached view:removed":function(e){this._renderSelectButton()},"view:attached":function(e){this.scrollTo(0)}})},loadHistory:function(t,i,n){var s=this;return n=e.extend(n||{silent:!0}),this.info("loadHistory:",t,i,n),this.setModel(new r.default.History({id:t})),n.silent=!0,this.trigger("loading"),this.model.fetchWithContents(i,n).always(function(){s.render(),s.trigger("loading-done")})},refreshContents:function(e){return this.model?this.model.refresh(e):n.when()},_setUpCollectionListeners:function(){return k.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"fetching-more":function(){this._toggleContentsLoadingIndicator(!0),this.$emptyMessage().hide()},"fetching-more-done":function(){this._toggleContentsLoadingIndicator(!1)}})},_showLoadingIndicator:function(t,i,s){var a=n('<div class="loading-indicator"/>');this.$el.html(a.text(t).slideDown(e.isUndefined(i)?this.fxSpeed:i))},_hideLoadingIndicator:function(t){this.$(".loading-indicator").slideUp(e.isUndefined(t)?this.fxSpeed+200:t,function(){n(this).remove()})},_buildNewRender:function(){var e=k.prototype._buildNewRender.call(this);return this._renderSelectButton(e),e},_renderSelectButton:function(e){if(e=e||this.$el,!this.multiselectActions().length)return null;if(!this.views.length)return this.hideSelectors(),e.find(".controls .actions .show-selectors-btn").remove(),null;var t=e.find(".controls .actions .show-selectors-btn");return t.length?t:(0,w.default)({title:(0,$.default)("Operations on multiple datasets"),classes:"show-selectors-btn",faIcon:"fa-check-square-o"}).prependTo(e.find(".controls .actions"))},_renderEmptyMessage:function(e){var t=this.$emptyMessage(e);return this.model.get("contents_active").active<=0?t.empty().append(this.emptyMsg).show():this.searchFor&&this.model.contents.haveSearchDetails()&&!this.views.length?t.empty().append(this.noneFoundMsg).show():(t.hide(),n())},$scrollContainer:function(e){return this.$list(e)},_toggleContentsLoadingIndicator:function(e){e?this.$list().html('<div class="contents-loading-indicator"><span class="fa fa-2x fa-spinner fa-spin"/></div>'):this.$list().find(".contents-loading-indicator").remove()},renderItems:function(e){e=e||this.$el;var t=this.$list(e);n(".tooltip").remove(),t.empty(),this.views=[];var i=this._filterCollection();return i.length?(this._renderPagination(e),this.views=this._renderSomeItems(i,t)):e.find("> .controls .list-pagination").empty(),this._renderEmptyMessage(e).toggle(!i.length),this.trigger("views:ready",this.views),this.views},_renderPagination:function(e){var t=e.find("> .controls .list-pagination");return this.searchFor||!this.model.contents.shouldPaginate()?t.empty():(t.html(this.templates.pagination({current:this.model.contents.currentPage+1,last:this.model.contents.getLastPage()+1},this)),t.find("select.pages").tooltip(),t)},_renderSomeItems:function(e,t){var i=this,n=[];return t.append(e.map(function(e){var t=i._createItemView(e);return n.push(t),i._renderItemView$el(t)})),n},_filterItem:function(e){var t=this.model.contents;return(t.includeHidden||!e.hidden())&&(t.includeDeleted||!e.isDeletedOrPurged())&&k.prototype._filterItem.call(this,e)},_getItemViewClass:function(e){var t=e.get("history_content_type");switch(t){case"dataset":return this.HDAViewClass;case"dataset_collection":return this.HDCAViewClass}throw new TypeError("Unknown history_content_type: "+t)},_getItemViewOptions:function(t){var i=k.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,expanded:this.model.contents.storage.isExpanded(t.id),hasUser:this.model.ownedByCurrUser()})},_setUpItemViewListeners:function(e){var t=this;return k.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{expanded:function(e){t.model.contents.storage.addExpanded(e.model)},collapsed:function(e){t.model.contents.storage.removeExpanded(e.model)}})},collapseAll:function(){this.model.contents.storage.clearExpanded(),k.prototype.collapseAll.call(this)},getSelectedModels:function(){var e=k.prototype.getSelectedModels.call(this);return e.historyId=this.collection.historyId,e},events:e.extend(e.clone(k.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click > .controls .prev":"_clickPrevPage","click > .controls .next":"_clickNextPage","change > .controls .pages":"_changePageSelect","click .messages [class$=message]":"clearMessages"}),_clickPrevPage:function(e){this.model.stopPolling(),this.model.contents.fetchPrevPage()},_clickNextPage:function(e){this.model.stopPolling(),this.model.contents.fetchNextPage()},_changePageSelect:function(e){this.model.stopPolling();var t=n(e.currentTarget).val();this.model.contents.fetchPage(t)},toggleShowDeleted:function(e,t){e=void 0!==e?e:!this.model.contents.includeDeleted;var i=this.model.contents;return i.setIncludeDeleted(e,t),this.trigger("show-deleted",e),i.fetchCurrentPage({renderAll:!0}),e},toggleShowHidden:function(e,t,i){e=void 0!==e?e:!this.model.contents.includeHidden;var n=this.model.contents;return n.setIncludeHidden(e,i),this.trigger("show-hidden",e),n.fetchCurrentPage({renderAll:!0}),e},_firstSearch:function(e){var t=this;if(this.log("onFirstSearch",e),this.model.contents.haveSearchDetails())return void this.searchItems(e);this.$("> .controls 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i&&502===i.status?v.default.badGatewayErrorModal():v.default.ajaxErrorModal(t,i,n)}},clearMessages:function(t){return(e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget)).fadeOut(this.fxSpeed,function(){n(this).remove()}),this},scrollToHid:function(t){return this.scrollToItem(e.first(this.viewsWhereModel({hid:t})))},ordinalIndicator:function(e){var t=""+e;switch(t.charAt(t.length-1)){case"1":return t+"st";case"2":return t+"nd";case"3":return t+"rd";default:return t+"th"}},toString:function(){return"HistoryView("+(this.model?this.model.get("name"):"")+")"}});S.prototype.templates=function(){var t=function(){return'<div>\n            <div class="controls"></div>\n            <ul class="list-items"></ul>\n            <div class="empty-message infomessagesmall"></div>\',\n        </div>'},i=x.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- history.name %></div>',"</div>",'<div class="subtitle"></div>','<div class="history-size"><%- history.nice_size %></div>','<div class="actions"></div>','<div class="messages">',"<% if( history.deleted && history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been purged and deleted"),"</div>","<% } else if( history.deleted ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been deleted"),"</div>","<% } else if( history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been purged"),"</div>","<% } %>","<% if( history.message ){ %>",'<div class="<%= history.message.level || "info" %>messagesmall">',"<%= history.message.text %>","</div>","<% } %>","</div>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,$.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,$.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>",'<div class="list-pagination form-inline"></div>',"</div>"],"history"),n=x.default.wrapTemplate(['<button class="prev" <%- pages.current === 1 ? "disabled" : "" %>>previous</button>','<select class="pages form-control" ','title="',(0,$.default)("Click to open and select a page. Begin typing a page number to select it"),'">',"<% _.range( 1, pages.last + 1 ).forEach( function( i ){ %>",'<option value="<%- i - 1 %>" <%- i === pages.current ? "selected" : "" %>>',"<%- view.ordinalIndicator( i ) %> of <%- pages.last %> pages","</option>","<% }); %>","</select>",'<button class="next" <%- pages.current === pages.last ? "disabled" : "" %>>next</button>'],"pages");return e.extend(e.clone(k.prototype.templates),{el:t,controls:i,pagination:n})}(),t.default={HistoryView:S}}).call(t,i(1),i(0))},function(e,t,i){"use strict";function n(e,t){function i(){var i=['<div class="loading-indicator">','<div class="loading-indicator-text">','<span class="fa fa-spinner fa-spin fa-lg"></span>','<span class="loading-indicator-message">loading...</span>',"</div>","</div>"].join("\n"),n=o(i).hide().css(t.css||{position:"fixed"}),s=n.children(".loading-indicator-text");return t.cover?(n.css({"z-index":2,top:e.css("top"),bottom:e.css("bottom"),left:e.css("left"),right:e.css("right"),opacity:.5,"background-color":"white","text-align":"center"}),s=n.children(".loading-indicator-text").css({"margin-top":"20px"})):(s=n.children(".loading-indicator-text").css({margin:"12px 0px 0px 10px",opacity:"0.85",color:"grey"}),s.children(".loading-indicator-message").css({margin:"0px 8px 0px 0px","font-style":"italic"})),n}var n=this;return t=a.default.extend({cover:!1},t||{}),n.show=function(t,s,a){return t=t||"loading...",s=s||"fast",e.parent().find(".loading-indicator").remove(),n.$indicator=i().insertBefore(e),n.message(t),n.$indicator.fadeIn(s,a),n},n.message=function(e){n.$indicator.find("i").text(e)},n.hide=function(e,t){return e=e||"fast",n.$indicator&&n.$indicator.length?n.$indicator.fadeOut(e,function(){n.$indicator.remove(),t&&t()}):t&&t(),n},n}Object.defineProperty(t,"__esModule",{value:!0});var s=i(0),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=a.default;t.default=n},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(123),o=s(a),l=i(119),r=s(l),d=i(5),c=s(d),u=i(3),h=s(u),f=o.default.DatasetListItemEdit,p=f.extend({className:f.prototype.className+" history-content",_fetchModelDetails:function(){var t=this;return t.model.inReadyState()&&!t.model.hasDetails()?t.model.fetch({silent:!0}):t.model.has("rerunnable")?e.when():t.model.fetch({silent:!0,data:{keys:["rerunnable","creating_job"].join(",")}})},events:n.extend(n.clone(f.prototype.events),{"click .unhide-link":function(e){return this.model.unhide(),!1}}),toString:function(){return"HDAListItemEdit("+(this.model?""+this.model:"(no model)")+")"}});p.prototype.templates=function(){var e=n.extend({},f.prototype.templates.warnings,{hidden:c.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,h.default)("This dataset has been hidden"),'<br /><a class="unhide-link" a href="javascript:void(0);">',(0,h.default)("Unhide it"),"</a>","</div>","<% } %>"],"dataset")});return n.extend({},f.prototype.templates,{titleBar:r.default.HDAListItemView.prototype.templates.titleBar,warnings:e})}(),t.default={HDAListItemEdit:p}}).call(t,i(0),i(1))},function(e,t,i){"use strict";function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(121),a=n(s),o=i(259),l=n(o),r=i(21),d=n(r),c=i(3),u=n(c),h=a.default.HDCAListItemView,f=h.extend({_getFoldoutPanelClass:function(){return l.default.CollectionViewEdit},_renderPrimaryActions:function(){return this.log(this+"._renderPrimaryActions"),h.prototype._renderPrimaryActions.call(this).concat([this._renderDeleteButton()])},_renderDeleteButton:function(){var e=this,t=this.model.get("deleted");return(0,d.default)({title:t?(0,u.default)("Dataset collection is already deleted"):(0,u.default)("Delete"),classes:"delete-btn",faIcon:"fa-times",disabled:t,onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},toString:function(){return"HDCAListItemEdit("+(this.model?""+this.model:"(no model)")+")"}});t.default={HDCAListItemEdit:f}},function(e,t,i){"use strict";function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(122),a=n(s),o=i(60),l=(n(o),i(260)),r=n(l),d=i(5),c=(n(d),i(39)),u=n(c),h=i(21),f=(n(h),i(3)),p=n(f);i(20);var m=a.default.CollectionView,g=m.extend({DatasetDCEViewClass:r.default.DatasetDCEListItemEdit,NestedDCDCEViewClass:r.default.NestedDCDCEListItemEdit,getNestedDCDCEViewClass:function(){return r.default.NestedDCDCEListItemEdit.extend({foldoutPanelClass:g})},initialize:function(e){m.prototype.initialize.call(this,e)},_setUpBehaviors:function(e){if(e=e||this.$el,m.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()){this.tagsEditorShown=!0;var t=this;e.find("> .controls .name").attr("title",(0,p.default)("Click to rename collection")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var i=t.model.get("name");e&&e!==i?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(i)}}),this.tagsEditor=new u.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},usePrompt:!1}),this.tagsEditor.toggle(!0)}},toString:function(){return"CollectionViewEdit("+(this.model?this.model.get("name"):"")+")"}});t.default={CollectionViewEdit:g}},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(67),o=s(a),l=i(123),r=s(l),d=i(5),c=(s(d),i(3)),u=(s(c),o.default.DCListItemView),h=u.extend({initialize:function(e){u.prototype.initialize.call(this,e)},toString:function(){return"DCListItemEdit("+(this.model?""+this.model:"(no model)")+")"}}),f=o.default.DCEListItemView,p=f.extend({initialize:function(e){f.prototype.initialize.call(this,e)},toString:function(){return"DCEListItemEdit("+(this.model?""+this.model:"(no model)")+")"}}),m=r.default.DatasetListItemEdit.extend({initialize:function(e){r.default.DatasetListItemEdit.prototype.initialize.call(this,e)},_fetchModelDetails:function(){var t=this;return t.model.inReadyState()&&!t.model.hasDetails()?t.model.fetch({silent:!0}):e.when()},_renderDeleteButton:function(){return null},toString:function(){return"DatasetDCEListItemEdit("+(this.model?""+this.model:"(no model)")+")"}});m.prototype.templates=function(){return n.extend({},r.default.DatasetListItemEdit.prototype.templates,{titleBar:o.default.DatasetDCEListItemView.prototype.templates.titleBar})}();var g=o.default.NestedDCDCEListItemView.extend({toString:function(){return"NestedDCDCEListItemEdit("+(this.model?""+this.model:"(no model)")+")"}});t.default={DCListItemEdit:h,DCEListItemEdit:p,DatasetDCEListItemEdit:m,NestedDCDCEListItemEdit:g}}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}function o(e,t){var i=e.toJSON();return v(i,{defaultHideSourceItems:t,creationFn:function(t,i,n){return t=[{name:"forward",src:"hda",id:t[0].id},{name:"reverse",src:"hda",id:t[1].id}],e.createHDCA(t,"paired",i,n)}})}Object.defineProperty(t,"__esModule",{value:!0});var l=i(58),r=a(l),d=i(59),c=a(d),u=i(5),h=a(u),f=i(3),p=a(f),m=e.View.extend(h.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"collection-element",initialize:function(e){this.element=e.element||{},this.identifier=e.identifier},render:function(){return this.$el.attr("data-element-id",this.element.id).html(this.template({identifier:this.identifier,element:this.element})),this},template:n.template(['<span class="identifier"><%- identifier %></span>','<span class="name"><%- element.name 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this._createElementView(this.workingElements[1],{identifier:"reverse"})},_createElementView:function(e,t){var i=new this.elementViewClass(n.extend(t,{element:e}));return this.elementViews.push(i),i},swap:function(){this.workingElements=[this.workingElements[1],this.workingElements[0]],this._renderList()},events:n.extend(n.clone(g.prototype.events),{"click .swap":"swap"}),templates:n.extend(n.clone(g.prototype.templates),{middle:n.template(['<div class="collection-elements-controls">','<a class="swap" href="javascript:void(0);" title="',(0,p.default)("Swap forward and reverse datasets"),'">',(0,p.default)("Swap"),"</a>","</div>",'<div class="collection-elements scroll-container flex-row">',"</div>"].join("")),helpContent:n.template(["<p>",(0,p.default)(["Pair collections are permanent collections containing two datasets: one forward and one reverse. 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RegExp(this.filters[1])]),i}e=e||{},e.createPair=e.createPair||function(e){e=e||{};var t=e.listA.splice(e.indexA,1)[0],i=e.listB.splice(e.indexB,1)[0],n=e.listB.indexOf(t),s=e.listA.indexOf(i);return-1!==n&&e.listB.splice(n,1),-1!==s&&e.listA.splice(s,1),this._pair(t,i,{silent:!0})};var i=[];return e.preprocessMatch=e.preprocessMatch||function(e){var i=t.call(this);return n.extend(e,{matchTo:e.matchTo.name.replace(i[0],""),possible:e.possible.name.replace(i[1],"")})},function(t){this.debug("autopair _strategy ---------------------------"),t=t||{};var i,n=t.listA,s=t.listB,a=0,o={score:0,index:null},l=[];for(this.debug("starting list lens:",n.length,s.length),this.debug("bestMatch (starting):",JSON.stringify(o,null,"  "));a<n.length;){var r=n[a];for(o.score=0,i=0;i<s.length;i++){var d=s[i];if(this.debug(a+":"+r.name),this.debug(i+":"+d.name),n[a]!==s[i]&&(o=e.match.call(this,e.preprocessMatch.call(this,{matchTo:r,possible:d,index:i,bestMatch:o})),this.debug("bestMatch:",JSON.stringify(o,null,"  ")),1===o.score)){this.debug("breaking early due to perfect match");break}}var c=e.scoreThreshold.call(this);if(this.debug("scoreThreshold:",c),this.debug("bestMatch.score:",o.score),o.score>=c?l.push(e.createPair.call(this,{listA:n,indexA:a,listB:s,indexB:o.index})):a+=1,!n.length||!s.length)return l}return this.debug("paired:",JSON.stringify(l,null,"  ")),this.debug("autopair _strategy ---------------------------"),l}}function r(e,t){var i=e.toJSON();return b(i,{historyId:e.historyId,defaultHideSourceItems:t})}Object.defineProperty(t,"__esModule",{value:!0});var d=i(263),c=o(d),u=i(109),h=o(u),f=i(108),p=o(f),m=i(5),g=o(m),_=i(3),v=o(_);i(110);var y=e.View.extend(g.default.LoggableMixin).extend({_logNamespace:"collections",tagName:"li",className:"dataset paired",initialize:function(e){this.pair=e.pair||{}},template:n.template(['<span class="forward-dataset-name flex-column"><%- pair.forward.name %></span>','<span class="pair-name-column flex-column">','<span class="pair-name"><%- pair.name %></span>',"</span>",'<span class="reverse-dataset-name flex-column"><%- pair.reverse.name %></span>'].join("")),render:function(){this.dragStartHandler=n.bind(this._dragstart,this),this.dragEndHandler=n.bind(this._dragend,this);var e=this.$el.attr("draggable",!0).data("pair",this.pair).html(this.template({pair:this.pair})).addClass("flex-column-container").get(0);return e.addEventListener("dragstart",this.dragStartHandler,!1),e.addEventListener("dragend",this.dragEndHandler,!1),this},events:{dragover:"_sendToParent",drop:"_sendToParent"},_dragstart:function(e){e.currentTarget.style.opacity="0.4",e.originalEvent&&(e=e.originalEvent),e.dataTransfer.effectAllowed="move",e.dataTransfer.setData("text/plain",JSON.stringify(this.pair)),this.$el.parent().trigger("pair.dragstart",[this])},_dragend:function(e){e.currentTarget.style.opacity="1.0",this.$el.parent().trigger("pair.dragend",[this])},_sendToParent:function(e){this.$el.parent().trigger(e)},toString:function(){return"PairView("+this.pair.name+")"}}),w=e.View.extend(g.default.LoggableMixin).extend(p.default.CollectionCreatorMixin).extend({_logNamespace:"collections",className:"list-of-pairs-collection-creator collection-creator flex-row-container",initialize:function(e){this.metric("PairedCollectionCreator.initialize",e),e=n.defaults(e,{datasets:[],filters:this.DEFAULT_FILTERS,automaticallyPair:!0,strategy:"lcs",matchPercentage:.9,twoPassAutopairing:!0}),this.initialList=e.datasets,this.historyId=e.historyId,this.filters=this.commonFilters[e.filters]||this.commonFilters[this.DEFAULT_FILTERS],n.isArray(e.filters)&&(this.filters=e.filters),this.automaticallyPair=e.automaticallyPair,this.strategy=this.strategies[e.strategy]||this.strategies[this.DEFAULT_STRATEGY],n.isFunction(e.strategy)&&(this.strategy=e.strategy),this.matchPercentage=e.matchPercentage,this.twoPassAutopairing=e.twoPassAutopairing,this.removeExtensions=!0,this.oncancel=e.oncancel,this.oncreate=e.oncreate,this.autoscrollDist=e.autoscrollDist||24,this.unpairedPanelHidden=!1,this.pairedPanelHidden=!1,this.$dragging=null,this.blocking=!1,this._setUpCommonSettings(e),this._setUpBehaviors(),this._dataSetUp()},commonFilters:{illumina:["_1","_2"],Rs:["_R1","_R2"]},DEFAULT_FILTERS:"illumina",strategies:{simple:"autopairSimple",lcs:"autopairLCS",levenshtein:"autopairLevenshtein"},DEFAULT_STRATEGY:"lcs",_dataSetUp:function(){this.paired=[],this.unpaired=[],this.selectedIds=[],this._sortInitialList(),this._ensureIds(),this.unpaired=this.initialList.slice(0),this.automaticallyPair&&(this.autoPair(),this.once("rendered:initial",function(){this.trigger("autopair")}))},_sortInitialList:function(){this._sortDatasetList(this.initialList)},_sortDatasetList:function(e){return e.sort(function(e,t){return(0,h.default)(e.name,t.name)}),e},_ensureIds:function(){return this.initialList.forEach(function(e){e.hasOwnProperty("id")||(e.id=n.uniqueId())}),this.initialList},_splitByFilters:function(){function e(e,t){return t.test(e.name)}var t=this.filters.map(function(e){return new RegExp(e)}),i=[[],[]];return this.unpaired.forEach(function(n){t.forEach(function(t,s){e(n,t)&&i[s].push(n)})}),i},_addToUnpaired:function(e){var t=this;this.unpaired.splice(function i(n,s){if(n===s)return n;var a=Math.floor((s-n)/2)+n,o=(0,h.default)(e.name,t.unpaired[a].name);if(o<0)return i(n,a);if(o>0)return i(a+1,s);for(;t.unpaired[a]&&t.unpaired[a].name===e.name;)a++;return a}(0,this.unpaired.length),0,e)},autoPair:function(e){var t=this._splitByFilters(),i=[];return this.twoPassAutopairing&&(i=this.autopairSimple({listA:t[0],listB:t[1]}),t=this._splitByFilters()),e=e||this.strategy,t=this._splitByFilters(),i=i.concat(this[e].call(this,{listA:t[0],listB:t[1]}))},autopairSimple:l({scoreThreshold:function(){return.6},match:function(e){return e=e||{},e.matchTo===e.possible?{index:e.index,score:1}:e.bestMatch}}),autopairLevenshtein:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=(0,c.default)(e.matchTo,e.possible),i=1-t/Math.max(e.matchTo.length,e.possible.length);return i>e.bestMatch.score?{index:e.index,score:i}:e.bestMatch}}),autopairLCS:l({scoreThreshold:function(){return this.matchPercentage},match:function(e){e=e||{};var t=this._naiveStartingAndEndingLCS(e.matchTo,e.possible).length,i=t/Math.max(e.matchTo.length,e.possible.length);return i>e.bestMatch.score?{index:e.index,score:i}:e.bestMatch}}),_naiveStartingAndEndingLCS:function(e,t){for(var i="",n="",s=0,a=0;s<e.length&&s<t.length&&e[s]===t[s];)i+=e[s],s+=1;if(s===e.length)return e;if(s===t.length)return t;for(s=e.length-1,a=t.length-1;s>=0&&a>=0&&e[s]===t[a];)n=[e[s],n].join(""),s-=1,a-=1;return i+n},_pair:function(e,t,i){i=i||{},this.debug("_pair:",e,t);var s=this._createPair(e,t,i.name);return this.paired.push(s),this.unpaired=n.without(this.unpaired,e,t),i.silent||this.trigger("pair:new",s),s},_createPair:function(e,t,i){if(!e||!t||e===t)throw new Error("Bad pairing: "+[JSON.stringify(e),JSON.stringify(t)]);return i=i||this._guessNameForPair(e,t),{forward:e,name:i,reverse:t}},_guessNameForPair:function(e,t,i){i=void 0!==i?i:this.removeExtensions;var n=e.name,s=t.name,a=this._naiveStartingAndEndingLCS(n.replace(new RegExp(this.filters[0]),""),s.replace(new RegExp(this.filters[1]),""));if(i){var o=a.lastIndexOf(".");if(o>0){var l=a.slice(o,a.length);a=a.replace(l,""),n=n.replace(l,""),s=s.replace(l,"")}}return a||n+" & "+s},_unpair:function(e,t){if(t=t||{},!e)throw new Error("Bad pair: "+JSON.stringify(e));return this.paired=n.without(this.paired,e),this._addToUnpaired(e.forward),this._addToUnpaired(e.reverse),t.silent||this.trigger("pair:unpair",[e]),e},unpairAll:function(){for(var e=[];this.paired.length;)e.push(this._unpair(this.paired[0],{silent:!0}));this.trigger("pair:unpair",e)},_pairToJSON:function(e,t){return t=t||"hda",{collection_type:"paired",src:"new_collection",name:e.name,element_identifiers:[{name:"forward",id:e.forward.id,src:t},{name:"reverse",id:e.reverse.id,src:t}]}},createList:function(e){var t=this,i=Galaxy.root+"api/histories/"+this.historyId+"/contents/dataset_collections",a={type:"dataset_collection",collection_type:"list:paired",hide_source_items:t.hideOriginals||!1,name:n.escape(e||t.$(".collection-name").val()),element_identifiers:t.paired.map(function(e){return t._pairToJSON(e)})};return t.blocking=!0,s.ajax(i,{type:"POST",contentType:"application/json",dataType:"json",data:JSON.stringify(a)}).always(function(){t.blocking=!1}).fail(function(e,i,n){t._ajaxErrHandler(e,i,n)}).done(function(e,i,n){t.trigger("collection:created",e,i,n),t.metric("collection:created",e),"function"==typeof t.oncreate&&t.oncreate.call(this,e,i,n)})},_ajaxErrHandler:function(e,t,i){this.error(e,t,i);var n=this,s=(0,v.default)("An error occurred while creating this collection");e&&(0===e.readyState&&0===e.status?s+=": "+(0,v.default)("Galaxy could not be reached and may be updating.")+(0,v.default)(" Try again in a few minutes."):e.responseJSON?s+="<br /><pre>"+JSON.stringify(e.responseJSON)+"</pre>":s+=": "+i),n._showAlert(s,"alert-danger")},render:function(e,t){return this.$el.empty().html(this.templates.main()),this._renderHeader(e),this._renderMiddle(e),this._renderFooter(e),this._addPluginComponents(),this.trigger("rendered",this),this},_renderHeader:function(e,t){var i=this.$(".header").empty().html(this.templates.header()).find(".help-content").prepend(a(this.templates.helpContent()));return this._renderFilters(),i},_renderFilters:function(){return this.$(".forward-column .column-header input").val(this.filters[0]).add(this.$(".reverse-column .column-header input").val(this.filters[1]))},_renderMiddle:function(e,t){var i=this.$(".middle").empty().html(this.templates.middle());return this.unpairedPanelHidden?this.$(".unpaired-columns").hide():this.pairedPanelHidden&&this.$(".paired-columns").hide(),this._renderUnpaired(),this._renderPaired(),i},_renderUnpaired:function(e,t){var i,n,s=this,a=[],o=this._splitByFilters();return this.$(".forward-column .title").text([o[0].length,(0,v.default)("unpaired forward")].join(" ")),this.$(".forward-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-o[0].length)),this.$(".reverse-column .title").text([o[1].length,(0,v.default)("unpaired reverse")].join(" ")),this.$(".reverse-column .unpaired-info").text(this._renderUnpairedDisplayStr(this.unpaired.length-o[1].length)),this.$(".unpaired-columns .column-datasets").empty(),this.$(".autopair-link").toggle(0!==this.unpaired.length),0===this.unpaired.length?void this._renderUnpairedEmpty():(n=o[1].map(function(e,t){return void 0!==o[0][t]&&o[0][t]!==e&&a.push(s._renderPairButton()),s._renderUnpairedDataset(e)}),i=o[0].map(function(e){return s._renderUnpairedDataset(e)}),i.length||n.length?(this.$(".unpaired-columns .forward-column .column-datasets").append(i).add(this.$(".unpaired-columns .paired-column .column-datasets").append(a)).add(this.$(".unpaired-columns .reverse-column .column-datasets").append(n)),void this._adjUnpairedOnScrollbar()):void this._renderUnpairedNotShown())},_renderUnpairedDisplayStr:function(e){return["(",e," ",(0,v.default)("filtered out"),")"].join("")},_renderUnpairedDataset:function(e){return a("<li/>").attr("id","dataset-"+e.id).addClass("dataset unpaired").attr("draggable",!0).addClass(e.selected?"selected":"").append(a("<span/>").addClass("dataset-name").text(e.name)).data("dataset",e)},_renderPairButton:function(){return a("<li/>").addClass("dataset unpaired").append(a("<span/>").addClass("dataset-name").text((0,v.default)("Pair these datasets")))},_renderUnpairedEmpty:function(){var e=a('<div class="empty-message"></div>').text("("+(0,v.default)("no remaining unpaired datasets")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_renderUnpairedNotShown:function(){var e=a('<div class="empty-message"></div>').text("("+(0,v.default)("no datasets were found matching the current filters")+")");return this.$(".unpaired-columns .paired-column .column-datasets").empty().prepend(e),e},_adjUnpairedOnScrollbar:function(){var e=this.$(".unpaired-columns").last(),t=this.$(".unpaired-columns .reverse-column .dataset").first();if(t.length){var i=e.offset().left+e.outerWidth(),n=t.offset().left+t.outerWidth(),s=Math.floor(i)-Math.floor(n);this.$(".unpaired-columns .forward-column").css("margin-left",s>0?s:0)}},_renderPaired:function(e,t){if(this.$(".paired-column-title .title").text([this.paired.length,(0,v.default)("paired")].join(" ")),this.$(".unpair-all-link").toggle(0!==this.paired.length),0===this.paired.length)return void this._renderPairedEmpty();this.$(".remove-extensions-link").show(),this.$(".paired-columns .column-datasets").empty();var i=this;this.paired.forEach(function(e,t){var n=new y({pair:e});i.$(".paired-columns .column-datasets").append(n.render().$el).append(['<button class="unpair-btn">','<span class="fa fa-unlink" title="',(0,v.default)("Unpair"),'"></span>',"</button>"].join(""))})},_renderPairedEmpty:function(){var e=a('<div class="empty-message"></div>').text("("+(0,v.default)("no paired datasets yet")+")");return this.$(".paired-columns .column-datasets").empty().prepend(e),e},footerSettings:{".hide-originals":"hideOriginals",".remove-extensions":"removeExtensions"},_addPluginComponents:function(){this._chooseFiltersPopover(".choose-filters-link"),this.$(".help-content i").hoverhighlight(".collection-creator","rgba( 64, 255, 255, 1.0 )")},_chooseFiltersPopover:function(e){function t(e,t){return['<button class="filter-choice btn" ','data-forward="',e,'" data-reverse="',t,'">',(0,v.default)("Forward"),": ",e,", ",(0,v.default)("Reverse"),": ",t,"</button>"].join("")}var i=a(n.template(['<div class="choose-filters">','<div class="help">',(0,v.default)("Choose from the following filters to change which unpaired reads are shown in the display"),":</div>",n.values(this.commonFilters).map(function(e){return t(e[0],e[1])}).join(""),"</div>"].join(""))({}));return this.$(e).popover({container:".collection-creator",placement:"bottom",html:!0,content:i})},_validationWarning:function(e,t){"name"===e&&(e=this.$(".collection-name").add(this.$(".collection-name-prompt")),this.$(".collection-name").focus().select()),t?(e=e||this.$(".validation-warning"),e.removeClass("validation-warning")):e.addClass("validation-warning")},_setUpBehaviors:function(){return this.once("rendered",function(){this.trigger("rendered:initial",this)}),this.on("pair:new",function(){this._renderUnpaired(),this._renderPaired(),this.$(".paired-columns").scrollTop(8e6)}),this.on("pair:unpair",function(e){this._renderUnpaired(),this._renderPaired(),this.splitView()}),this.on("filter-change",function(){this.filters=[this.$(".forward-unpaired-filter input").val(),this.$(".reverse-unpaired-filter input").val()],this.metric("filter-change",this.filters),this._renderFilters(),this._renderUnpaired()}),this.on("autopair",function(){this._renderUnpaired(),this._renderPaired();var e,t=null;this.paired.length?(t="alert-success",e=this.paired.length+" "+(0,v.default)("pairs created"),this.unpaired.length||(e+=": "+(0,v.default)("all datasets have been successfully paired"),this.hideUnpaired(),this.$(".collection-name").focus())):e=(0,v.default)(["Could not automatically create any pairs from the given dataset names.","You may want to choose or enter different filters and try auto-pairing again.","Close this message using the X on the right to view more help."].join(" ")),this._showAlert(e,t)}),this},events:{"click .more-help":"_clickMoreHelp","click .less-help":"_clickLessHelp","click .main-help":"_toggleHelp","click .header .alert button":"_hideAlert","click .forward-column .column-title":"_clickShowOnlyUnpaired","click .reverse-column .column-title":"_clickShowOnlyUnpaired","click .unpair-all-link":"_clickUnpairAll","change .forward-unpaired-filter input":function(e){this.trigger("filter-change")},"focus .forward-unpaired-filter input":function(e){a(e.currentTarget).select()},"click .autopair-link":"_clickAutopair","click .choose-filters .filter-choice":"_clickFilterChoice","click .clear-filters-link":"_clearFilters","change .reverse-unpaired-filter input":function(e){this.trigger("filter-change")},"focus .reverse-unpaired-filter input":function(e){a(e.currentTarget).select()},"click .forward-column .dataset.unpaired":"_clickUnpairedDataset","click .reverse-column .dataset.unpaired":"_clickUnpairedDataset","click .paired-column .dataset.unpaired":"_clickPairRow","click .unpaired-columns":"clearSelectedUnpaired","mousedown .unpaired-columns .dataset":"_mousedownUnpaired","click .paired-column-title":"_clickShowOnlyPaired","mousedown .flexible-partition-drag":"_startPartitionDrag","click .paired-columns .dataset.paired":"selectPair","click .paired-columns":"clearSelectedPaired","click .paired-columns .pair-name":"_clickPairName","click .unpair-btn":"_clickUnpair","dragover .paired-columns .column-datasets":"_dragoverPairedColumns","drop .paired-columns .column-datasets":"_dropPairedColumns","pair.dragstart .paired-columns .column-datasets":"_pairDragstart","pair.dragend   .paired-columns .column-datasets":"_pairDragend","change .remove-extensions":function(e){this.toggleExtensions()},"change .collection-name":"_changeName","keydown .collection-name":"_nameCheckForEnter","change .hide-originals":"_changeHideOriginals","click .cancel-create":"_cancelCreate","click .create-collection":"_clickCreate"},_clickShowOnlyUnpaired:function(e){this.$(".paired-columns").is(":visible")?this.hidePaired():this.splitView()},_clickShowOnlyPaired:function(e){this.$(".unpaired-columns").is(":visible")?this.hideUnpaired():this.splitView()},hideUnpaired:function(e,t){this.unpairedPanelHidden=!0,this.pairedPanelHidden=!1,this._renderMiddle(e,t)},hidePaired:function(e,t){this.unpairedPanelHidden=!1,this.pairedPanelHidden=!0,this._renderMiddle(e,t)},splitView:function(e,t){return this.unpairedPanelHidden=this.pairedPanelHidden=!1,this._renderMiddle(e,t),this},_clickUnpairAll:function(e){this.metric("unpairAll"),this.unpairAll()},_clickAutopair:function(e){var t=this.autoPair();this.metric("autopair",t.length,this.unpaired.length),this.trigger("autopair")},_clickFilterChoice:function(e){var t=a(e.currentTarget);this.$(".forward-unpaired-filter input").val(t.data("forward")),this.$(".reverse-unpaired-filter input").val(t.data("reverse")),this._hideChooseFilters(),this.trigger("filter-change")},_hideChooseFilters:function(){this.$(".choose-filters-link").popover("hide"),this.$(".popover").css("display","none")},_clearFilters:function(e){this.$(".forward-unpaired-filter input").val(""),this.$(".reverse-unpaired-filter input").val(""),this.trigger("filter-change")},_clickUnpairedDataset:function(e){return e.stopPropagation(),this.toggleSelectUnpaired(a(e.currentTarget))},toggleSelectUnpaired:function(e,t){t=t||{};var i=e.data("dataset"),n=void 0!==t.force?t.force:!e.hasClass("selected");return e.length&&void 0!==i?(n?(e.addClass("selected"),t.waitToPair||this.pairAllSelected()):e.removeClass("selected"),e):e},pairAllSelected:function(e){e=e||{};var t=this,i=[],n=[],s=[];return t.$(".unpaired-columns .forward-column .dataset.selected").each(function(){i.push(a(this).data("dataset"))}),t.$(".unpaired-columns .reverse-column .dataset.selected").each(function(){n.push(a(this).data("dataset"))}),i.length=n.length=Math.min(i.length,n.length),i.forEach(function(e,i){try{s.push(t._pair(e,n[i],{silent:!0}))}catch(e){t.error(e)}}),s.length&&!e.silent&&this.trigger("pair:new",s),s},clearSelectedUnpaired:function(){this.$(".unpaired-columns .dataset.selected").removeClass("selected")},_mousedownUnpaired:function(e){if(e.shiftKey){var t=this,i=a(e.target).addClass("selected"),n=function(e){t.$(e.target).filter(".dataset").addClass("selected")};i.parent().on("mousemove",n),a(document).one("mouseup",function(e){i.parent().off("mousemove",n),t.pairAllSelected()})}},_clickPairRow:function(e){var t=a(e.currentTarget).index(),i=a(".unpaired-columns .forward-column .dataset").eq(t).data("dataset"),n=a(".unpaired-columns .reverse-column .dataset").eq(t).data("dataset");this._pair(i,n)},_startPartitionDrag:function(e){function t(e){n.$(".flexible-partition-drag").css("color",""),a("body").css("cursor","").unbind("mousemove",i)}function i(e){var t=e.pageY-s;n.adjPartition(t)||a("body").trigger("mouseup"),n._adjUnpairedOnScrollbar(),s+=t}var n=this,s=e.pageY;a("body").css("cursor","ns-resize"),n.$(".flexible-partition-drag").css("color","black"),a("body").mousemove(i),a("body").one("mouseup",t)},adjPartition:function(e){var t=this.$(".unpaired-columns"),i=this.$(".paired-columns"),n=parseInt(t.css("height"),10),s=parseInt(i.css("height"),10);n=Math.max(10,n+e),s-=e;var a=e<0;if(a){if(this.unpairedPanelHidden)return!1;if(n<=10)return this.hideUnpaired(),!1}else this.unpairedPanelHidden&&(t.show(),this.unpairedPanelHidden=!1);if(a)this.pairedPanelHidden&&(i.show(),this.pairedPanelHidden=!1);else{if(this.pairedPanelHidden)return!1;if(s<=15)return this.hidePaired(),!1}return t.css({height:n+"px",flex:"0 0 auto"}),!0},selectPair:function(e){e.stopPropagation(),a(e.currentTarget).toggleClass("selected")},clearSelectedPaired:function(e){this.$(".paired-columns .dataset.selected").removeClass("selected")},_clickPairName:function(e){e.stopPropagation();var t=a(e.currentTarget),i=t.parent().parent(),n=i.index(".dataset.paired"),s=this.paired[n],o=prompt("Enter a new name for the pair:",s.name);o&&(s.name=o,s.customizedName=!0,t.text(s.name))},_clickUnpair:function(e){var 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t.matches(e)})},toString:function(){return["DatasetAssociationCollection(",this.length,")"].join("")}});t.default={DatasetAssociation:f,DatasetAssociationCollection:p}}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(16),a=(n(s),i(5)),o=(n(a),i(3)),l=(n(o),1e3);try{l=localStorage.getItem("collectionFuzzyCountDefault")||l}catch(e){}var r={defaults:{history_id:null,history_content_type:null,hid:null,visible:!0},idAttribute:"type_id",hidden:function(){return!this.get("visible")},isVisible:function(e,t){var i=!0;return e||!this.get("deleted")&&!this.get("purged")||(i=!1),t||this.get("visible")||(i=!1),i},urlRoot:Galaxy.root+"api/histories/",url:function(){var e=this.get("history_content_type"),t=this.get("history_id"),i=this.get("id"),n=""+this.urlRoot+t+"/contents/"+e+"s/"+i;return"dataset_collection"==e&&(n=n+"?view=element-reference&fuzzy_count="+l),n},hide:function(t){return this.get("visible")?this.save({visible:!1},t):e.when()},unhide:function(t){return this.get("visible")?e.when():this.save({visible:!0},t)},toString:function(){return[this.get("type_id"),this.get("hid"),this.get("name")].join(":")}};t.default={HistoryContentMixin:r}}).call(t,i(0))},function(e,t,i){"use strict";(function(e){Object.defineProperty(t,"__esModule",{value:!0});var 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n=this,s=this.$(".footer").empty().html(this.templates.footer());return e.each(this.footerSettings,function(e,t){n.$(t).prop("checked",n[e])}),"function"==typeof this.oncancel&&this.$(".cancel-create.btn").show(),s},_creatorTemplates:{main:e.template(['<div class="header flex-row no-flex"></div>','<div class="middle flex-row flex-row-container"></div>','<div class="footer flex-row no-flex"></div>'].join(""))}};t.default={CollectionCreatorMixin:i}}).call(t,i(1))},function(e,t,i){"use strict";function n(e,t){var i=/(-?[0-9\.]+)/g,n=e.toString().toLowerCase()||"",s=t.toString().toLowerCase()||"",a=String.fromCharCode(0),o=n.replace(i,a+"$1"+a).split(a),l=s.replace(i,a+"$1"+a).split(a),r=new Date(n).getTime(),d=r?new Date(s).getTime():null;if(d){if(r<d)return-1;if(r>d)return 1}for(var c,u,h=0,f=Math.max(o.length,l.length);h<f;h++){if(c=parseFloat(o[h])||o[h],u=parseFloat(l[h])||l[h],c<u)return-1;if(c>u)return 1}return 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o={};s.each(e.output_connections,function(e){n.step_index===e.input_step_index&&(o[e.input_name]=e)}),s.each(t.parms[a],function(t,n){var s=o[n];s&&(t.type="hidden",t.help=t.step_linked?t.help+", ":"",t.help+="Output dataset '"+s.output_name+"' from step "+(parseInt(i)+1),t.step_linked=t.step_linked||[],t.step_linked.push(e))})})});var i=0;this.wp_inputs={},s.each(this.steps,function(i,n){s.each(t.parms[n],function(t,n){e(t.value,function(e){e.links.push(i),t.wp_linked=!0,t.type="text",t.backdrop=!0,t.style="ui-form-wp-target"})}),s.each(i.post_job_actions,function(t){s.each(t.action_arguments,function(t){e(t,function(){})})})}),s.each(this.steps,function(e,i){if("tool"==e.step_type){var n=!0;_.default.visitInputs(e.inputs,function(i,s,a){var o=i.value&&"RuntimeValue"==i.value.__class__,l=-1!=["data","data_collection"].indexOf(i.type),r=a[i.data_ref];i.step_linked&&!t._isDataStep(i.step_linked)&&(n=!1),i.options&&(0==i.options.length&&!n||i.wp_linked)&&(i.is_workflow=!0),r&&(i.is_workflow=r.step_linked&&!t._isDataStep(r.step_linked)||i.wp_linked),(l||i.value&&"RuntimeValue"==i.value.__class__&&!i.step_linked)&&(e.collapsed=!1),o&&(i.value=i.default_value),i.flavor="workflow",o||l||"hidden"===i.type||i.wp_linked||(i.optional||!d.default.isEmpty(i.value)&&""!==i.value)&&(i.collapsible_value=i.value,i.collapsible_preview=!0)})}})},render:function(){var e=this;this.deferred.reset(),this._renderHeader(),this._renderMessage(),this._renderParameters(),this._renderHistory(),s.each(this.steps,function(t){e._renderStep(t)})},_renderHeader:function(){var e=this;this.execute_btn=new f.default.Button({icon:"fa-check",title:(0,l.default)("Run workflow"),cls:"btn 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The workflow may still run, but any new options will have default values. Please review the messages below to make a decision about whether the changes will affect your analysis.",status:"warning",persistent:!0,fade:!1}).$el);var e=this.model.get("step_version_changes");e&&e.length>0&&this.$message.append(new f.default.Message({message:"Some tools are being executed with different versions compared to those available when this workflow was last saved because the other versions are not or no longer available on this Galaxy instance. To upgrade your workflow and dismiss this message simply edit the workflow and re-save it.",status:"warning",persistent:!0,fade:!1}).$el)},_renderParameters:function(){var e=this;this.wp_form=null,s.isEmpty(this.wp_inputs)||(this.wp_form=new m.default({title:"<b>Workflow Parameters</b>",inputs:this.wp_inputs,cls:"ui-portlet-narrow",onchange:function(){s.each(e.wp_form.input_list,function(t,i){s.each(t.links,function(t){e._refreshStep(t)})})}}),this._append(this.$steps.empty(),this.wp_form.$el))},_renderHistory:function(){this.history_form=new m.default({cls:"ui-portlet-narrow",title:"<b>History Options</b>",inputs:[{type:"conditional",name:"new_history",test_param:{name:"check",label:"Send results to a new history",type:"boolean",value:"false",help:""},cases:[{value:"true",inputs:[{name:"name",label:"History name",type:"text",value:this.model.get("name")}]}]}]}),this._append(this.$steps,this.history_form.$el)},_renderStep:function(e){var t=this,i=null;this.deferred.execute(function(a){if(t.$steps.addClass("ui-steps"),"tool"==e.step_type)e.postchange=function(t,i){var s={tool_id:e.id,tool_version:e.version,inputs:n.extend(!0,{},i.data.create())};i.wait(!0),Galaxy.emit.debug("tool-form-composite::postchange()","Sending current state.",s),d.default.request({type:"POST",url:Galaxy.root+"api/tools/"+e.id+"/build",data:s,success:function(e){i.update(e),i.wait(!1),Galaxy.emit.debug("tool-form-composite::postchange()","Received new model.",e),t.resolve()},error:function(e){Galaxy.emit.debug("tool-form-composite::postchange()","Refresh request failed.",e),t.reject()}})},i=new y.default(e),e.post_job_actions&&e.post_job_actions.length&&i.portlet.append(n("<div/>").addClass("ui-form-element-disabled").append(n("<div/>").addClass("ui-form-title").html("<b>Job Post Actions</b>")).append(n("<div/>").addClass("ui-form-preview").html(s.reduce(e.post_job_actions,function(e,t){return e+" "+t.short_str},""))));else{var 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0;if(e.step_linked)o={values:[]},s.each(e.step_linked,function(e){if(t._isDataStep(e)){var i=t.forms[e.index].data.create().input;i&&s.each(i.values,function(e){o.values.push(e)})}}),!e.multiple&&o.values.length>0&&(o={values:[o.values[0]]});else if(e.wp_linked){o=e.value;for(var l,r=/\$\{(.+?)\}/g;l=r.exec(e.value);){var d=t.wp_form.field_list[t.wp_form.data.match(l[1])],c=d&&d.value();c&&(o=o.split(l[0]).join(c))}}void 0!==o&&a.value(o)}}}),i.trigger("change")):e.needs_refresh=!0},_refreshHistory:function(){var e=this,t=parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.model;this._refresh_history&&clearTimeout(this._refresh_history),t&&t.refresh().success(function(){0===t.numOfUnfinishedShownContents()&&(e._refresh_history=setTimeout(function(){e._refreshHistory()},t.UPDATE_DELAY))})},_execute:function(){var e=this;this.show_progress=!0,this._enabled(!1),this.deferred.execute(function(t){setTimeout(function(){t.resolve(),e._submit()},0)})},_submit:function(){var e=this,t=this.history_form.data.create(),i={new_history_name:t["new_history|name"]?t["new_history|name"]:null,history_id:t["new_history|name"]?null:this.model.get("history_id"),replacement_params:this.wp_form?this.wp_form.data.create():{},parameters:{},parameters_normalized:!0,batch:!0},s=!0;for(var a in this.forms){var o=this.forms[a],r=o.data.create(),c=e.steps[a],u=c.step_index;o.trigger("reset");for(var h in r){var f=r[h],p=o.data.match(h),m=(o.field_list[p],o.input_list[p]);if(!m.step_linked){if(!(s=this._isDataStep(c)?f&&f.values&&f.values.length>0:m.optional||m.is_workflow&&""!==f||!m.is_workflow&&null!==f)){o.highlight(p);break}i.parameters[u]=i.parameters[u]||{},i.parameters[u][h]=r[h]}}if(!s)break}s?(Galaxy.emit.debug("tool-form-composite::submit()","Validation 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this._setUpItemViewListeners(s),s},_destroyItemView:function(e){this.stopListening(e),this.views=n.without(this.views,e)},_destroyItemViews:function(e){var t=this;return t.views.forEach(function(e){t.stopListening(e)}),t.views=[],t},freeViews:function(){return this._destroyItemViews()},_getItemViewClass:function(e){return this.viewClass},_getItemViewOptions:function(e){return{fxSpeed:this.fxSpeed,expanded:!1,selectable:this.selecting,selected:n.contains(this.selected,e.id),draggable:this.dragItems}},_setUpItemViewListeners:function(e){var t=this;return this.listenTo(e,"all",function(){var e=Array.prototype.slice.call(arguments,0);e[0]="view:"+e[0],t.trigger.apply(t,e)}),this.listenTo(e,"draggable:dragstart",function(e,t){var i={},n=this.getSelectedModels();i=n.length?n.toJSON():[t.model.toJSON()],e.dataTransfer.setData("text",JSON.stringify(i))},this),t},_attachItems:function(e){var t=this;return this.$list(e).append(this.views.map(function(e){return t._renderItemView$el(e)})),this},_renderItemView$el:function(e){return e.render(0).$el},_renderEmptyMessage:function(e){this.debug("_renderEmptyMessage",e,this.searchFor);var t=this.searchFor?this.noneFoundMsg:this.emptyMsg;return this.$emptyMessage(e).text(t)},expandAll:function(){n.each(this.views,function(e){e.expand()})},collapseAll:function(){n.each(this.views,function(e){e.collapse()})},addItemView:function(e,t,i){var n=this,a=n._filterCollection().indexOf(e);if(-1!==a){var o=n._createItemView(e);return s(o).queue("fx",[function(e){n.$emptyMessage().is(":visible")?n.$emptyMessage().fadeOut(n.fxSpeed,e):e()},function(e){n._attachView(o,a),e()}]),o}},_attachView:function(e,t,i){i=!!n.isUndefined(i)||i,t=t||0;var s=this;return s.views.splice(t,0,e),s._insertIntoListAt(t,s._renderItemView$el(e).hide()),s.trigger("view:attached",e),i?e.$el.slideDown(s.fxSpeed,function(){s.trigger("view:attached:rendered")}):(e.$el.show(),s.trigger("view:attached:rendered")),e},_insertIntoListAt:function(e,t){var i=this.$list();return 0===e?i.prepend(t):i.children().eq(e-1).after(t),t},removeItemView:function(e,t,i){var a=this,o=n.find(a.views,function(t){return t.model===e});if(o)return a.views=n.without(a.views,o),a.trigger("view:removed",o),s({}).queue("fx",[function(e){o.$el.fadeOut(a.fxSpeed,e)},function(e){o.remove(),a.trigger("view:removed:rendered"),a.views.length?e():a._renderEmptyMessage().fadeIn(a.fxSpeed,e)}]),o},viewFromModelId:function(e){return n.find(this.views,function(t){return t.model.id===e})},viewFromModel:function(e){return e?this.viewFromModelId(e.id):void 0},viewsWhereModel:function(e){return this.views.filter(function(t){return n.isMatch(t.model.attributes,e)})},viewRange:function(e,t){if(e===t)return e?[e]:[];var i=this.views.indexOf(e),n=this.views.indexOf(t);return-1===i||-1===n?i===n?[]:-1===i?[t]:[e]:i<n?this.views.slice(i,n+1):this.views.slice(n,i+1)},_renderSearch:function(e){return e.find(".controls .search-input").searchInput({placeholder:this.searchPlaceholder,initialVal:this.searchFor,onfirstsearch:n.bind(this._firstSearch,this),onsearch:n.bind(this.searchItems,this),onclear:n.bind(this.clearSearch,this)}),e},_firstSearch:function(e){return this.log("onFirstSearch",e),this.searchItems(e)},searchItems:function(e,t){if(this.log("searchItems",e,this.searchFor,t),!t&&this.searchFor===e)return this;this.searchFor=e,this.renderItems(),this.trigger("search:searching",e,this);var i=this.$("> .controls .search-query");return i.val()!==e&&i.val(e),this},clearSearch:function(e){return this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.renderItems(),this},THROTTLE_SELECTOR_FX_AT:20,showSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!0,this.$(".list-actions").slideDown(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.showSelector(e)})},hideSelectors:function(e){e=void 0!==e?e:this.fxSpeed,this.selecting=!1,this.$(".list-actions").slideUp(e),e=this.views.length>=this.THROTTLE_SELECTOR_FX_AT?0:e,n.each(this.views,function(t){t.hideSelector(e)}),this.selected=[],this.lastSelected=null},toggleSelectors:function(){this.selecting?this.hideSelectors():this.showSelectors()},selectAll:function(e){n.each(this.views,function(t){t.select(e)})},deselectAll:function(e){this.lastSelected=null,n.each(this.views,function(t){t.deselect(e)})},selectRange:function(e,t){var i=this.viewRange(e,t);return n.each(i,function(e){e.select()}),i},getSelectedViews:function(){return n.filter(this.views,function(e){return e.selected})},getSelectedModels:function(){return new this.collection.constructor(n.map(this.getSelectedViews(),function(e){return e.model}))},_showLoadingIndicator:function(e,t,i){this.debug("_showLoadingIndicator",this.indicator,e,t,i),t=void 0!==t?t:this.fxSpeed,this.indicator||(this.indicator=new d.default(this.$el),this.debug("\t created",this.indicator)),this.$el.is(":visible")?(this.$el.fadeOut(t),this.indicator.show(e,t,i)):this.indicator.show(0,i)},_hideLoadingIndicator:function(e,t){this.debug("_hideLoadingIndicator",this.indicator,e,t),e=void 0!==e?e:this.fxSpeed,this.indicator&&this.indicator.hide(e,t)},scrollPosition:function(){return this.$scrollContainer().scrollTop()},scrollTo:function(e,t){return t=t||0,this.$scrollContainer().animate({scrollTop:e},t),this},scrollToTop:function(e){return this.scrollTo(0,e)},scrollToItem:function(e,t){return this},scrollToId:function(e,t){return this.scrollToItem(this.viewFromModelId(e),t)},events:{"click .select-all":"selectAll","click .deselect-all":"deselectAll"},toString:function(){return"ListPanel("+this.collection+")"}});p.prototype.templates=function(){return{el:u.default.wrapTemplate(["<div>",'<div class="controls"></div>','<div class="list-items"></div>','<div class="empty-message infomessagesmall"></div>',"</div>"]),controls:u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- view.title %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"])}}();var m=p.extend({modelCollectionKey:"contents",initialize:function(e){p.prototype.initialize.call(this,e),this.selecting=void 0!==e.selecting&&e.selecting,this.setModel(this.model,e)},setModel:function(e,t){if(t=t||{},this.debug(this+".setModel:",e,t),this.freeModel(),this.freeViews(),e){var i=this.model?this.model.get("id"):null;this.model=e,this.logger&&(this.model.logger=this.logger),this._setUpModelListeners(),this.stopListening(this.collection),this.collection=this.model[this.modelCollectionKey]||t.collection||this._createDefaultCollection(),this._setUpCollectionListeners(),i&&e.get("id")!==i&&this.trigger("new-model",this)}return this},freeModel:function(){return this.model&&this.stopListening(this.model),this},_setUpModelListeners:function(){return this.log(this+"._setUpModelListeners",this.model),this.listenTo(this.model,"error",function(){var e=Array.prototype.slice.call(arguments,0);e.unshift("error"),this.trigger.apply(this,e)},this),this.logger&&this.listenTo(this.model,"all",function(e){this.info(this+"(model)",e,arguments)}),this},_renderControls:function(e){this.debug(this+"(ModelListPanel)._renderControls");var t=this.model?this.model.toJSON():{},i=s(this.templates.controls(t,this));return e.find(".controls").replaceWith(i),i},toString:function(){return"ModelListPanel("+this.model+")"}});m.prototype.templates=function(){var e=u.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- model.name %></div>',"</div>",'<div class="subtitle"><%- view.subtitle %></div>','<div class="actions"></div>','<div class="messages"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,f.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,f.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>","</div>"]);return n.extend(n.clone(p.prototype.templates),{controls:e})}(),t.default={ListPanel:p,ModelListPanel:m}}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";function n(e,t){function i(e){o(this).parent().children("input").val("").trigger("searchInput.clear").blur(),t.onclear()}function n(e,n){if(!n)return i();o(this).trigger("search.search",n),"function"==typeof t.onfirstsearch&&u?(u=!1,t.onfirstsearch(n)):t.onsearch(n)}function s(){return['<input type="text" name="',t.name,'" placeholder="',t.placeholder,'" ','class="search-query ',t.classes,'" ',"/>"].join("")}var r=27,d=13,c=o(e),u=!0,h={initialVal:"",name:"search",placeholder:"search",classes:"",onclear:function(){},onfirstsearch:null,onsearch:function(e){},minSearchLen:0,escWillClear:!0,oninit:function(){}};return"string"===a.default.type(t)?("toggle-loading"===t&&function(){c.find(".search-loading").toggle(),c.find(".search-clear").toggle()}(),c):("object"===a.default.type(t)&&(t=a.default.extend(!0,{},h,t)),c.addClass("search-input").prepend([function(){return o(s()).focus(function(e){o(this).select()}).keyup(function(e){if(e.preventDefault(),e.stopPropagation(),e.which===r&&t.escWillClear)i.call(this,e);else{var s=o(this).val();(e.which===d||t.minSearchLen&&s.length>=t.minSearchLen)&&n.call(this,e,s)}}).val(t.initialVal)}(),function(){return o(['<span class="search-clear fa fa-times-circle" ','title="',l("clear search (esc)"),'"></span>'].join("")).tooltip({placement:"bottom"}).click(function(e){i.call(this,e)})}(),function(){return o(['<span class="search-loading fa fa-spinner fa-spin" ','title="',l("loading..."),'"></span>'].join("")).hide().tooltip({placement:"bottom"})}()]))}var s=i(0),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=a.default,l=window._l||function(e){return e};a.default.fn.extend({searchInput:function(e){return this.each(function(){return n(this,e)})}})},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(66),a=n(s),o=i(5),l=n(o),r=i(120),d=n(r),c=i(3),u=n(c),h=a.default.DatasetListItemView,f=h.extend({className:h.prototype.className+" history-content",initialize:function(e,t){h.prototype.initialize.call(this,e,t)},toString:function(){return"HDAListItemView("+(this.model?""+this.model:"(no model)")+")"}});f.prototype.templates=function(){var t=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+"</span>\n            </div>\n            </br>\n            "+d.default.nametagTemplate(t)+"\n        </div>\n    "},i=e.extend({},h.prototype.templates.warnings,{hidden:l.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,u.default)("This dataset has been hidden"),"</div>","<% } %>"],"dataset")});return e.extend({},h.prototype.templates,{titleBar:t,warnings:i})}(),t.default={HDAListItemView:f}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function i(t){return 0==t.indexOf("name:")?'<span class="label label-info">'+e.escape(t.slice(5))+"</span>":""}function n(t){return'<span class="nametags">'+e.sortBy(e.uniq(t.tags)).map(i).join("")+"</span>"}Object.defineProperty(t,"__esModule",{value:!0}),t.default={nametagTemplate:n}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(16),a=n(s),o=i(67),l=n(o),r=i(122),d=n(r),c=i(5),u=(n(c),i(120)),h=n(u),f=i(3),p=n(f),m=l.default.DCListItemView,g=m.extend({className:m.prototype.className+" history-content",_setUpListeners:function(){var e=this;m.prototype._setUpListeners.call(this);var t=function(t,i){e.render()};this.model.jobStatesSummary&&this.listenTo(this.model.jobStatesSummary,"change",t),this.listenTo(this.model,{"change:tags change:visible change:state":t})},_getFoldoutPanelClass:function(){return d.default.CollectionView},_swapNewRender:function(e){m.prototype._swapNewRender.call(this,e);var t,i=this.model.jobStatesSummary;t=i?i.new()?"loading":i.errored()?"error":i.terminal()?"ok":i.running()?"running":"queued":this.model.get("job_source_id")?"loading":this.model.get("populated_state")?a.default.OK:a.default.RUNNING,this.$el.addClass("state-"+t);var n=this.stateDescription();return this.$(".state-description").html(n),this.$el},stateDescription:function(){var e=this.model,t=(e.get("element_count"),e.get("job_source_type")),i=(this.model.get("collection_type"),d.default.collectionTypeDescription(e)),n=d.default.collectionDescription(e),s=e.jobStatesSummary;if(t&&"Job"!=t){if(s&&s.hasDetails()){var a=s.new(),o=a?null:s.jobCount();if(a)return'\n                        <div class="progress state-progress">\n                            <span class="note">Creating jobs.<span class="blinking">..</span></span>\n                            <div class="progress-bar info" style="width:100%">\n                        </div>';if(s.errored()){return"a "+i+" with "+s.numInError()+" / "+o+" jobs in error"}if(s.terminal())return n;var l=s.states().running||0,r=s.states().ok||0,c=r/(1*o),u=l/(1*o),h=1-c-u;return'\n                        <div class="progress state-progress">\n                            <span class="note">'+(o&&o>1?o+" jobs":"a job")+" generating a "+i+'</span>\n                            <div class="progress-bar ok" style="width:'+100*c+'%"></div>\n                            <div class="progress-bar running" style="width:'+100*u+'%"></div>\n                            <div class="progress-bar new" style="width:'+100*h+'%">\n                        </div>'}return'\n                    <div class="progress state-progress">\n                        <span class="note">Loading job data for '+i+'.<span class="blinking">..</span></span>\n                        <div class="progress-bar info" style="width:100%">\n                    </div>'}return n},toString:function(){return"HDCAListItemView("+(this.model?""+this.model:"(no model)")+")"}});g.prototype.templates=function(){var t=e.extend({},m.prototype.templates.warnings,{hidden:function(e){e.visible||(0,p.default)("This collection has been hidden")}}),i=function(t){return'\n        <div class="title-bar clear" tabindex="0">\n            <span class="state-icon"></span>\n            <div class="title">\n                <span class="hid">'+t.hid+'</span>\n                <span class="name">'+e.escape(t.name)+'</span>\n            </div>\n            <div class="state-description">\n            </div>\n            '+h.default.nametagTemplate(t)+"\n        </div>\n    "};return e.extend({},m.prototype.templates,{warnings:t,titleBar:i})}(),t.default={HDCAListItemView:g}}).call(t,i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}function s(e){var t=e.get("collection_type");return"list"==t?(0,f.default)("list"):"paired"==t?(0,f.default)("dataset pair"):"list:paired"==t?(0,f.default)("list of pairs"):(0,f.default)("nested list")}function a(e){var t=e.get("element_count"),i="a "+s(e);if(t){var n;1==t?n="with 1 item":t&&(n="with "+t+" items"),i=i+" "+(0,f.default)(n)}return i}Object.defineProperty(t,"__esModule",{value:!0});var o=i(117),l=n(o),r=i(60),d=(n(r),i(67)),c=n(d),u=i(5),h=(n(u),i(3)),f=n(h),p=l.default.ModelListPanel,m=p.extend({_logNamespace:"collections",className:p.prototype.className+" dataset-collection-panel",DatasetDCEViewClass:c.default.DatasetDCEListItemView,modelCollectionKey:"elements",initialize:function(e){p.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank",this.hasUser=e.hasUser,this.panelStack=[],this.parentName=e.parentName,this.foldoutStyle=e.foldoutStyle||"foldout",this.downloadUrl=Galaxy.root+"api/dataset_collections/"+this.model.attributes.id+"/download"},getNestedDCDCEViewClass:function(){return c.default.NestedDCDCEListItemView.extend({foldoutPanelClass:m})},_queueNewRender:function(e,t){t=void 0===t?this.fxSpeed:t;var i=this;this.handleWarning(e),i.log("_queueNewRender:",e,t),i._swapNewRender(e),i.trigger("rendered",i)},handleWarning:function(e){var t=this.views.length,i=this.model.get("element_count");if(i&&i!==t){var n=(0,f.default)("displaying only "+t+" of "+i+" items");e.find(".elements-warning").html('<div class="warningmessagesmall">'+n+"</div>")}},_filterCollection:function(){return this.model.getVisibleContents()},_getItemViewClass:function(e){switch(e.get("element_type")){case"hda":return this.DatasetDCEViewClass;case"dataset_collection":return this.getNestedDCDCEViewClass()}throw new TypeError("Unknown element type:",e.get("element_type"))},_getItemViewOptions:function(t){var i=p.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,hasUser:this.hasUser,foldoutStyle:this.foldoutStyle})},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}}),this},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$("> .controls").add(this.$list()).hide(),e.parentName=this.model.get("name"),this.$el.append(e.render().$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.render()},events:{"click .navigation .back":"close"},close:function(e){this.remove(),this.trigger("close")},toString:function(){return"CollectionView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=function(t,i){var n=a(i.model);return'\n        <div class="controls">\n            <div class="navigation">\n            <a class="back" href="javascript:void(0)">\n                <span class="fa fa-icon fa-angle-left"></span>\n                '+(0,f.default)("Back to ")+"\n                "+e.escape(i.parentName)+'\n            </a>\n            </div>\n            <div class="title">\n                <div class="name">'+(e.escape(t.name)||e.escape(t.element_identifier))+'</div>\n                <div class="subtitle">\n                    '+n+'\n                </div>\n            </div>\n            <div class="elements-warning">\n            </div>\n            <div class="tags-display"></div>\n            <div class="actions">\n                <a class="download-btn icon-btn" href="'+i.downloadUrl+'"\n                   title="" download="" data-original-title="Download Collection">\n                   <span class="fa fa-floppy-o"></span>\n                </a>\n            </div>\n        </div>'};return e.extend(e.clone(p.prototype.templates),{controls:t})}(),t.default={collectionTypeDescription:s,collectionDescription:a,CollectionView:m}}).call(t,i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(16),o=s(a),l=i(66),r=s(l),d=i(39),c=s(d),u=i(124),h=s(u),f=i(21),p=s(f),m=i(5),g=s(m),_=i(3),v=s(_),y=r.default.DatasetListItemView,w=y.extend({initialize:function(e){y.prototype.initialize.call(this,e),this.hasUser=e.hasUser,this.purgeAllowed=e.purgeAllowed||!1,this.tagsEditorShown=e.tagsEditorShown||!1,this.annotationEditorShown=e.annotationEditorShown||!1},_renderPrimaryActions:function(){var e=y.prototype._renderPrimaryActions.call(this);return this.model.get("state")===o.default.NOT_VIEWABLE?e:y.prototype._renderPrimaryActions.call(this).concat([this._renderEditButton(),this._renderDeleteButton()])},_renderEditButton:function(){var t=this;if(this.model.get("state")===o.default.DISCARDED||!this.model.get("accessible"))return null;var i=this.model.get("purged"),n=this.model.get("deleted"),s={title:(0,v.default)("Edit attributes"),href:Galaxy.root+"datasets/edit?dataset_id="+this.model.attributes.id,faIcon:"fa-pencil",classes:"edit-btn",onclick:function(e){Galaxy.router&&(e.preventDefault(),Galaxy.router.push("datasets/edit",{dataset_id:t.model.attributes.id}))}};return n||i?(s.disabled=!0,i?s.title=(0,v.default)("Cannot edit attributes of datasets removed from disk"):n&&(s.title=(0,v.default)("Undelete dataset to edit attributes"))):e.contains([o.default.UPLOAD,o.default.NEW],this.model.get("state"))&&(s.disabled=!0,s.title=(0,v.default)("This dataset is not yet editable")),(0,p.default)(s)},_renderDeleteButton:function(){if(!this.model.get("accessible"))return null;var e=this,t=this.model.isDeletedOrPurged();return(0,p.default)({title:t?(0,v.default)("Dataset is already deleted"):(0,v.default)("Delete"),disabled:t,faIcon:"fa-times",classes:"delete-btn",onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},_renderDetails:function(){var t=y.prototype._renderDetails.call(this),i=this.model.get("state");return!this.model.isDeletedOrPurged()&&e.contains([o.default.OK,o.default.FAILED_METADATA],i)&&(this._renderTags(t),this._renderAnnotation(t),this._makeDbkeyEditLink(t)),this._setUpBehaviors(t),t},_renderToolHelpButton:function(){var e=this.model.attributes.dataset_id,t=this.model.attributes.creating_job,i=this,s=function(t){var s='<div id="thdiv-'+e+'" class="toolhelp">';t.name&&t.help?(s+="<strong>Tool help for "+t.name+"</strong><hr/>",s+=t.help):s+="<strong>Tool help is unavailable for this dataset.</strong><hr/>",s+="</div>",i.$el.find(".details").append(n.parseHTML(s))},a=function(e){n.ajax({url:Galaxy.root+"api/tools/"+e.tool_id+"/build"}).done(function(e){s(e)}).fail(function(){s({})})};return null===Galaxy.user.id?null:(0,p.default)({title:(0,v.default)("Tool Help"),classes:"icon-btn",href:"#",faIcon:"fa-question",onclick:function(){i.$el.find(".toolhelp").length>0?i.$el.find(".toolhelp").toggle():n.ajax({url:Galaxy.root+"api/jobs/"+t}).done(function(e){a(e)}).fail(function(){console.log('Failed at recovering job information from the  Galaxy API for job id "'+t+'".')})}})},_renderSecondaryActions:function(){var e=y.prototype._renderSecondaryActions.call(this);switch(this.model.get("state")){case o.default.UPLOAD:case o.default.NOT_VIEWABLE:return e;case o.default.ERROR:return e.unshift(this._renderErrButton()),e.concat([this._renderRerunButton(),this._renderToolHelpButton()]);case o.default.OK:case o.default.FAILED_METADATA:return e.concat([this._renderRerunButton(),this._renderVisualizationsButton(),this._renderToolHelpButton()])}return e.concat([this._renderRerunButton(),this._renderToolHelpButton()])},_renderErrButton:function(){var e=this;return(0,p.default)({title:(0,v.default)("View or report this error"),href:Galaxy.root+"datasets/error?dataset_id="+this.model.attributes.id,classes:"report-error-btn",faIcon:"fa-bug",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("datasets/error",{dataset_id:e.model.attributes.id}))}})},_renderRerunButton:function(){var e=this.model.get("creating_job");if(this.model.get("rerunnable"))return(0,p.default)({title:(0,v.default)("Run this job again"),href:this.model.urls.rerun,classes:"rerun-btn",target:this.linkTarget,faIcon:"fa-refresh",onclick:function(t){Galaxy.router&&(t.preventDefault(),Galaxy.router.push("/",{job_id:e}))}})},_renderVisualizationsButton:function(){var t=this.model.get("visualizations");if(this.model.isDeletedOrPurged()||!this.hasUser||!this.model.hasData()||e.isEmpty(t))return null;if(!e.isObject(t[0]))return this.warn("Visualizations have been switched off"),null;var i=n(this.templates.visualizations(t,this));return i.find('[target="galaxy_main"]').attr("target",this.linkTarget),this._addScratchBookFn(i.find(".visualization-link").addBack(".visualization-link")),i},_addScratchBookFn:function(e){e.click(function(e){Galaxy.frame&&Galaxy.frame.active&&(Galaxy.frame.add({title:(0,v.default)("Visualization"),url:n(this).attr("href")}),e.preventDefault(),e.stopPropagation())})},_renderTags:function(e){if(this.hasUser){var t=this;this.tagsEditor=new c.default.TagsEditor({model:this.model,el:e.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.tagsEditorShown=!0},onhide:function(){t.tagsEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset tags"),classes:"tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".actions .right"))}),this.tagsEditorShown&&this.tagsEditor.toggle(!0)}},_renderAnnotation:function(e){if(this.hasUser){var t=this;this.annotationEditor=new h.default.AnnotationEditor({model:this.model,el:e.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.annotationEditorShown=!0},onhide:function(){t.annotationEditorShown=!1},$activator:(0,p.default)({title:(0,v.default)("Edit dataset annotation"),classes:"annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".actions .right"))}),this.annotationEditorShown&&this.annotationEditor.toggle(!0)}},_makeDbkeyEditLink:function(e){if("?"===this.model.get("metadata_dbkey")&&!this.model.isDeletedOrPurged()){var t=n('<a class="value">?</a>').attr("href",this.model.urls.edit).attr("target","_top");e.find(".dbkey .value").replaceWith(t)}},events:e.extend(e.clone(y.prototype.events),{"click .undelete-link":"_clickUndeleteLink","click .purge-link":"_clickPurgeLink","click .edit-btn":function(e){this.trigger("edit",this,e)},"click .delete-btn":function(e){this.trigger("delete",this,e)},"click .rerun-btn":function(e){this.trigger("rerun",this,e)},"click .report-err-btn":function(e){this.trigger("report-err",this,e)},"click .visualization-btn":function(e){this.trigger("visualize",this,e)},"click .dbkey a":function(e){this.trigger("edit",this,e)}}),_clickUndeleteLink:function(e){return this.model.undelete(),!1},_clickPurgeLink:function(e){return confirm((0,v.default)("This will permanently remove the data in your dataset. Are you sure?"))&&this.model.purge(),!1},toString:function(){return"HDAEditView("+(this.model?""+this.model:"(no model)")+")"}});w.prototype.templates=function(){var t=e.extend({},y.prototype.templates.warnings,{failed_metadata:g.default.wrapTemplate(['<% if( dataset.state === "failed_metadata" ){ %>','<div class="failed_metadata-warning warningmessagesmall">',(0,v.default)("An error occurred setting the metadata for this dataset"),'<br /><a href="<%- dataset.urls.edit %>" target="_top">',(0,v.default)("Set it manually or retry auto-detection"),"</a>","</div>","<% } %>"],"dataset"),deleted:g.default.wrapTemplate(["<% if( dataset.deleted && !dataset.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,v.default)("This dataset has been deleted"),'<br /><a class="undelete-link" href="javascript:void(0);">',(0,v.default)("Undelete it"),"</a>","<% if( view.purgeAllowed ){ %>",'<br /><a class="purge-link" href="javascript:void(0);">',(0,v.default)("Permanently remove it from 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e.extend({},y.prototype.templates,{warnings:t,visualizations:i})}(),t.default={DatasetListItemEdit:w}}).call(t,i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(5),o=s(a),l=i(3),r=s(l);i(20);var d=e.View.extend(o.default.LoggableMixin).extend(o.default.HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(e){e=e||{},this.tooltipConfig=e.tooltipConfig||{placement:"bottom"},this.listenTo(this.model,"change:annotation",function(){this.render()}),this.hiddenUntilActivated(e.$activator,e)},render:function(){var e=this;return this.$el.html(this._template()),this.$annotation().make_text_editable({use_textarea:!0,on_finish:function(t){e.$annotation().text(t),e.model.save({annotation:t},{silent:!0}).fail(function(){e.$annotation().text(e.model.previous("annotation"))})}}),this},_template:function(){var 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Data",percentage:0,status:"",onunload:function(){},onclick:function(){}}).set(t),this.setElement(this._template()),this.$progress=this.$(".progress-bar"),this.listenTo(this.model,"change",this.render,this),this.render(),n(window).on("beforeunload",function(){return i.model.get("onunload")()})},render:function(){var e=this.model.attributes;this.$el.off("click").on("click",function(t){e.onclick(t)}).tooltip({title:this.model.get("tooltip"),placement:"bottom"}),this.$progress.removeClass().addClass("progress-bar").addClass("progress-bar-notransition").addClass(""!=e.status&&"progress-bar-"+e.status).css({width:e.percentage+"%"})},_template:function(){return'<div class="upload-button"><div class="progress"><div class="progress-bar"/><a class="panel-header-button" href="javascript:void(0)" id="tool-panel-upload-button"><span class="fa fa-upload"/></a></div></div>'}});t.default={View:o}}).call(t,i(2),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=(a(r),i(29)),c=a(d),u=i(244),h=a(u),f=i(55),p=a(f),m=i(56),g=a(m),_=i(15),v=a(_),y=i(10),w=a(y),b=i(6),x=a(b),C=i(245),$=a(C);i(57),t.default=e.View.extend({upload_size:0,collection:new c.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ui_button=e.ui_button,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.$uploadbox=this.$(".upload-box"),this.$uploadtable=this.$(".upload-table"),this.btnLocal=new x.default.Button({id:"btn-local",title:(0,l.default)("Choose local file"),onclick:function(){t.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new x.default.Button({id:"btn-ftp",title:(0,l.default)("Choose FTP file"),onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,l.default)("Pause"),onclick:function(){t._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,l.default)("Reset"),onclick:function(){t._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$uploadbox.uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$uploadbox.addClass("highlight")},ondragleave:function(){t.$uploadbox.removeClass("highlight")}}),this.ftp=new v.default.View({title:(0,l.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new w.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t._changeExtension(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new g.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new w.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t._changeGenome(e)}}),this.loader=new $.default({$container:this.$uploadbox,collection:this.collection,new_content:function(e){var i=new h.default(t,{model:e});return t.$uploadtable.find("> tbody:first").append(i.$el),i.render(),i}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this.render()},render:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running,s=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[n?"enable":"disable"](),this.btnFtp[n?"enable":"disable"](),this.btnCreate[n?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[s?"show":"hide"](),this.$(".upload-helper")[s?"hide":"show"]()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new c.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t});this.render(),this.collection.add(i)},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"success"}),this.ui_button.model.set("percentage",this._uploadPercentage(100,i.get("file_size"))),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.success++,this.render(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this.render()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this.render()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this.render()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(0!=this.counter.announce&&0==this.counter.running){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this._uploadFtp(),this.uploadbox.start(),this.render()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){if(0==this.counter.running){this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this.render()}},_changeExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},_changeGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_uploadFtp:function(){var e=this,t=[];this.collection.each(function(i){"queued"==i.get("status")&&"ftp"==i.get("file_mode")&&(e.uploadbox.remove(i.id),t.push(i))}),t.length>0&&s.uploadpost({data:this.app.toData(t),url:this.app.options.nginx_upload_path,success:function(i){n.each(t,function(t){e._eventSuccess(t.id)})},error:function(i){n.each(t,function(t){e._eventError(t.id,i)})}})},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Type</th><th>Genome</th><th>Settings</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Type (set all):</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=a(r),c=i(29),u=(a(c),i(54)),h=a(u),f=i(15),p=a(f),m=i(10),g=a(m);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$settings=this.$(".upload-settings"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new p.default.View({title:(0,l.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});var s=this.app.select_genome.value(),a=this.app.select_extension.value();this.select_genome=new g.default.View({css:"upload-genome",data:i.app.list_genomes,container:this.$(".upload-genome"),value:s,onchange:function(e){i.model.set("genome",e)}}),this.select_extension=new g.default.View({css:"upload-extension",data:i.app.list_extensions,container:this.$(".upload-extension"),value:a,onchange:function(e){i.model.set("extension",e)}}),this.model.set({genome:s,extension:a}),this.$symbol.on("click",function(){i._removeRow()}),this.$(".upload-extension-info").on("click",function(e){i.app.showExtensionInfo({$el:n(e.target),title:i.select_extension.text(),extension:i.select_extension.value()})}).on("mousedown",function(e){e.preventDefault()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:genome",function(){i._refreshGenome()}),this.listenTo(this.model,"change:extension",function(){i._refreshExtension()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()})},render:function(){this._refreshType(),this._refreshPercentage(),this._refreshStatus(),this._refreshInfo(),this._refreshGenome(),this._refreshExtension(),this._refreshFileSize()},remove:function(){this.select_genome.remove(),this.select_extension.remove(),e.View.prototype.remove.apply(this)},_refreshType:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(d.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshExtension:function(){this.select_extension.value(this.model.get("extension"))},_refreshGenome:function(){this.select_genome.value(this.model.get("genome"))},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),t?(this.select_genome.enable(),this.select_extension.enable()):(this.select_genome.disable(),this.select_extension.disable()),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(d.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-extension" style="float: left;"/>&nbsp;&nbsp<div class="upload-extension-info upload-icon-button fa fa-search"/></td><td><div class="upload-genome"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,i,n){Object.defineProperty(t,"__esModule",{value:!0}),t.default=e.View.extend({initialize:function(e){this.$container=e.$container,this.collection=e.collection,this.new_content=e.new_content,this.max=e.max||50,this.content_list={},this.$message=i("<div/>").addClass("ui-limitloader").append("...only the first "+this.max+" entries are visible."),this.$container.append(this.$message),this.listenTo(this.collection,"reset",this._reset,this),this.listenTo(this.collection,"add",this._refresh,this),this.listenTo(this.collection,"remove",this._remove,this)},_done:function(){var e=n.size(this.content_list)>this.max;return this.$message[e?"show":"hide"](),e},_reset:function(){n.each(this.content_list,function(e){e.remove()}),this.content_list={},this.$message.hide()},_remove:function(e){var t=e.id,i=this.content_list[t];i&&(i.remove(),delete this.content_list[t]),this._refresh()},_refresh:function(){if(!this._done())for(var e in this.collection.models){var t=this.collection.models[e];this.content_list[t.id];if(!this.content_list[t.id]){var i=this.new_content(t);if(this.content_list[t.id]=i,this._done())break}}}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=(a(r),i(29)),c=a(d),u=i(247),h=a(u),f=i(56),p=a(f),m=i(15),g=(a(m),i(10)),_=a(g),v=i(6),y=a(v);t.default=e.View.extend({collection:new c.default.Collection,initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnStart=new y.default.Button({title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnClose=new y.default.Button({title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnStart,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.select_extension=new _.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return e.composite_files}),onchange:function(e){t.collection.reset();var i=n.findWhere(t.list_extensions,{id:e});i&&i.composite_files&&n.each(i.composite_files,function(e){t.collection.add({id:t.collection.size(),file_desc:e.description||e.name})})}}),this.$(".upload-footer-extension-info").on("click",function(e){new p.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new _.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome}),this.listenTo(this.collection,"add",function(e){t._eventAnnounce(e)}),this.listenTo(this.collection,"change add",function(){t.render()}),this.select_extension.options.onchange(this.select_extension.value()),this.render()},render:function(){var e=this.collection.first();e&&"running"==e.get("status")?(this.select_genome.disable(),this.select_extension.disable()):(this.select_genome.enable(),this.select_extension.enable()),this.collection.where({status:"ready"}).length==this.collection.length&&this.collection.length>0?(this.btnStart.enable(),this.btnStart.$el.addClass("btn-primary")):(this.btnStart.disable(),this.btnStart.$el.removeClass("btn-primary")),this.$(".upload-table")[this.collection.length>0?"show":"hide"]()},_eventAnnounce:function(e){var t=new h.default(this,{model:e});this.$(".upload-table > tbody:first").append(t.$el),this.$(".upload-table")[this.collection.length>0?"show":"hide"](),t.render()},_eventStart:function(){var e=this;this.collection.each(function(t){t.set({genome:e.select_genome.value(),extension:e.select_extension.value()})}),s.uploadpost({url:this.app.options.nginx_upload_path,data:this.app.toData(this.collection.filter()),success:function(t){e._eventSuccess(t)},error:function(t){e._eventError(t)},progress:function(t){e._eventProgress(t)}})},_eventProgress:function(e){this.collection.each(function(t){t.set("percentage",e)})},_eventSuccess:function(e){this.collection.each(function(e){e.set("status","success")}),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e){this.collection.each(function(t){t.set({status:"error",info:e})})},_template:function(){return'<div class="upload-view-composite"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th/><th/><th>Description</th><th>Name</th><th>Size</th><th>Settings</th><th>Status</th></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title">Composite Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title">Genome/Build:</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=a(r),c=i(54),u=a(c),h=i(55),f=a(h),p=i(15),m=a(p),g=i(6),_=a(g),v=i(10);a(v);i(57),t.default=e.View.extend({status_classes:{init:"upload-mode fa fa-exclamation text-primary",ready:"upload-mode fa fa-check text-success",running:"upload-mode fa fa-spinner fa-spin",success:"upload-mode fa fa-check",error:"upload-mode fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template()),this.$source=this.$(".upload-source"),this.$settings=this.$(".upload-settings"),this.$status=this.$(".upload-status"),this.$text=this.$(".upload-text"),this.$text_content=this.$(".upload-text-content"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$file_name=this.$(".upload-file-name"),this.$file_desc=this.$(".upload-file-desc"),this.$file_size=this.$(".upload-file-size"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.uploadinput=this.$el.uploadinput({ondragover:function(){i.model.get("enabled")&&i.$el.addClass("warning")},ondragleave:function(){i.$el.removeClass("warning")},onchange:function(e){"running"!=i.model.get("status")&&e&&e.length>0&&(i.model.reset({file_data:e[0],file_name:e[0].name,file_size:e[0].size,file_mode:e[0].mode||"local"}),i._refreshReady())}}),this.button_menu=new _.default.ButtonMenu({icon:"fa-caret-down",title:(0,l.default)("Select"),pull:"left"}),this.$source.append(this.button_menu.$el),this.button_menu.addMenu({icon:"fa-laptop",title:(0,l.default)("Choose local file"),onclick:function(){i.uploadinput.dialog()}}),this.app.ftp_upload_site&&this.button_menu.addMenu({icon:"fa-folder-open-o",title:(0,l.default)("Choose FTP file"),onclick:function(){i._showFtp()}}),this.button_menu.addMenu({icon:"fa-edit",title:"Paste/Fetch data",onclick:function(){i.model.reset({file_mode:"new",file_name:"New File"})}}),this.ftp=new m.default.View({title:"Choose FTP file:",container:this.$source.find(".ui-button-menu"),placement:"right"}),this.settings=new m.default.View({title:(0,l.default)("Upload configuration"),container:this.$settings,placement:"bottom"}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length}),i._refreshReady()}),this.$settings.on("click",function(e){i._showSettings()}).on("mousedown",function(e){e.preventDefault()}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_name",function(){i._refreshFileName()}),this.listenTo(this.model,"change:file_mode",function(){i._refreshMode()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){this.$el.attr("id","upload-row-"+this.model.id),this.$file_name.html(s.escape(this.model.get("file_name")||"-")),this.$file_desc.html(this.model.get("file_desc")||"Unavailable"),this.$file_size.html(d.default.bytesToString(this.model.get("file_size"))),this.$status.removeClass().addClass(this.status_classes.init)},remove:function(){e.View.prototype.remove.apply(this)},_refreshReady:function(){this.app.collection.each(function(e){e.set("status",e.get("file_size")>0&&"ready"||"init")})},_refreshMode:function(){"new"==this.model.get("file_mode")?(this.height=this.$el.height(),this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$text_content.val("").trigger("keyup")):(this.$el.height(this.height),this.$text.hide())},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));0!=e?this.$progress_bar.css({width:e+"%"}):(this.$progress_bar.addClass("no-transition"),this.$progress_bar.css({width:"0%"}),this.$progress_bar[0].offsetHeight,this.$progress_bar.removeClass("no-transition")),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$status.removeClass().addClass(this.status_classes[e]),this.model.set("enabled","running"!=e),this.$text_content.attr("disabled",!this.model.get("enabled")),this.$el.removeClass("success danger warning"),"running"!=e&&"ready"!=e||this.model.set("percentage",0),this.$source.find(".button")["running"==e?"addClass":"removeClass"]("disabled"),"success"==e&&(this.$el.addClass("success"),this.model.set("percentage",100),this.$percentage.html("100%")),"error"==e?(this.$el.addClass("danger"),this.model.set("percentage",0),this.$info_progress.hide(),this.$info_text.show()):(this.$info_progress.show(),this.$info_text.hide())},_refreshFileName:function(){this.$file_name.html(this.model.get("file_name")||"-")},_refreshFileSize:function(){this.$file_size.html(d.default.bytesToString(this.model.get("file_size")))},_showFtp:function(){if(this.ftp.visible)this.ftp.hide();else{var e=this;this.ftp.empty(),this.ftp.append(new f.default({ftp_upload_site:this.app.ftp_upload_site,onchange:function(t){e.ftp.hide(),"running"!=e.model.get("status")&&t&&(e.model.reset({file_mode:"ftp",file_name:t.path,file_size:t.size,file_path:t.path}),e._refreshReady())}}).$el),this.ftp.show()}},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new u.default(this).$el),this.settings.show())},_template:function(){return'<tr class="upload-row"><td><div class="upload-source"/><div class="upload-text-column"><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-status"/></td><td><div class="upload-file-desc upload-title"/></td><td><div class="upload-file-name upload-title"/></td><td><div class="upload-file-size upload-size"/></td><td><div class="upload-settings upload-icon-button fa fa-gear"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=(a(r),i(29)),c=a(d),u=i(249),h=a(u),f=i(55),p=a(f),m=i(56),g=a(m),_=i(15),v=a(_),y=i(10),w=a(y),b=i(6),x=a(b),C=i(58);a(C);i(57),t.default=e.View.extend({upload_size:0,collection:new c.default.Collection,counter:{announce:0,success:0,error:0,running:0,reset:function(){this.announce=this.success=this.error=this.running=0}},initialize:function(e){var t=this;this.app=e,this.options=e.options,this.list_extensions=e.list_extensions,this.list_genomes=e.list_genomes,this.ui_button=e.ui_button,this.ftp_upload_site=e.currentFtp(),this.setElement(this._template()),this.btnLocal=new x.default.Button({id:"btn-local",title:(0,l.default)("Choose local files"),onclick:function(){t.uploadbox.select()},icon:"fa fa-laptop"}),this.btnFtp=new x.default.Button({id:"btn-ftp",title:(0,l.default)("Choose FTP files"),onclick:function(){t._eventFtp()},icon:"fa fa-folder-open-o"}),this.btnCreate=new x.default.Button({id:"btn-new",title:"Paste/Fetch data",onclick:function(){t._eventCreate()},icon:"fa fa-edit"}),this.btnStart=new x.default.Button({id:"btn-start",title:(0,l.default)("Start"),onclick:function(){t._eventStart()}}),this.btnBuild=new x.default.Button({id:"btn-build",title:(0,l.default)("Build"),onclick:function(){t._eventBuild()}}),this.btnStop=new x.default.Button({id:"btn-stop",title:(0,l.default)("Pause"),onclick:function(){t._eventStop()}}),this.btnReset=new x.default.Button({id:"btn-reset",title:(0,l.default)("Reset"),onclick:function(){t._eventReset()}}),this.btnClose=new x.default.Button({id:"btn-close",title:(0,l.default)("Close"),onclick:function(){t.app.modal.hide()}}),n.each([this.btnLocal,this.btnFtp,this.btnCreate,this.btnStop,this.btnReset,this.btnStart,this.btnBuild,this.btnClose],function(e){t.$(".upload-buttons").prepend(e.$el)}),this.uploadbox=this.$(".upload-box").uploadbox({url:this.app.options.nginx_upload_path,announce:function(e,i){t._eventAnnounce(e,i)},initialize:function(e){return t.app.toData([t.collection.get(e)],t.history_id)},progress:function(e,i){t._eventProgress(e,i)},success:function(e,i){t._eventSuccess(e,i)},error:function(e,i){t._eventError(e,i)},complete:function(){t._eventComplete()},ondragover:function(){t.$(".upload-box").addClass("highlight")},ondragleave:function(){t.$(".upload-box").removeClass("highlight")}}),this.ftp=new v.default.View({title:(0,l.default)("FTP files"),container:this.btnFtp.$el}),this.select_extension=new w.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-extension"),data:n.filter(this.list_extensions,function(e){return!e.composite_files}),value:this.options.default_extension,onchange:function(e){t.updateExtension(e)}}),this.collectionType="list",this.select_collection=new w.default.View({css:"upload-footer-selection-compressed",container:this.$(".upload-footer-collection-type"),data:[{id:"list",text:"List"},{id:"paired",text:"Paired"},{id:"list:paired",text:"List of Pairs"}],value:"list",onchange:function(e){t.updateCollectionType(e)}}),this.$(".upload-footer-extension-info").on("click",function(e){new g.default({$el:s(e.target),title:t.select_extension.text(),extension:t.select_extension.value(),list:t.list_extensions,placement:"top"})}).on("mousedown",function(e){e.preventDefault()}),this.select_genome=new w.default.View({css:"upload-footer-selection",container:this.$(".upload-footer-genome"),data:this.list_genomes,value:this.options.default_genome,onchange:function(e){t.updateGenome(e)}}),this.collection.on("remove",function(e){t._eventRemove(e)}),this._updateScreen()},_eventAnnounce:function(e,t){this.counter.announce++;var i=new c.default.Model({id:e,file_name:t.name,file_size:t.size,file_mode:t.mode||"local",file_path:t.path,file_data:t,extension:this.select_extension.value(),genome:this.select_genome.value()});this.collection.add(i);var n=new h.default(this,{model:i});this.$(".upload-table > tbody:first").append(n.$el),this._updateScreen(),n.render()},_eventProgress:function(e,t){var i=this.collection.get(e);i.set("percentage",t),this.ui_button.model.set("percentage",this._uploadPercentage(t,i.get("file_size")))},_eventSuccess:function(e,t){var i=n.pluck(t.outputs,"hid"),s=this.collection.get(e);s.set({percentage:100,status:"success",hids:i}),this.ui_button.model.set("percentage",this._uploadPercentage(100,s.get("file_size"))),this.upload_completed+=100*s.get("file_size"),this.counter.announce--,this.counter.success++,this._updateScreen(),Galaxy.currHistoryPanel.refreshContents()},_eventError:function(e,t){var i=this.collection.get(e);i.set({percentage:100,status:"error",info:t}),this.ui_button.model.set({percentage:this._uploadPercentage(100,i.get("file_size")),status:"danger"}),this.upload_completed+=100*i.get("file_size"),this.counter.announce--,this.counter.error++,this._updateScreen()},_eventComplete:function(){this.collection.each(function(e){"queued"==e.get("status")&&e.set("status","init")}),this.counter.running=0,this._updateScreen()},_eventBuild:function(){var e=[];n.forEach(this.collection.models,function(t){e.push.apply(e,t.get("hids"))});var t=n.map(e,function(e){return Galaxy.currHistoryPanel.collection.getByHid(e)}),i=new Galaxy.currHistoryPanel.collection.constructor(t);i.historyId=Galaxy.currHistoryPanel.collection.historyId,Galaxy.currHistoryPanel.buildCollection(this.collectionType,i,!0),this.counter.running=0,this._updateScreen(),this._eventReset(),this.app.modal.hide()},_eventRemove:function(e){var t=e.get("status");"success"==t?this.counter.success--:"error"==t?this.counter.error--:this.counter.announce--,this.uploadbox.remove(e.id),this._updateScreen()},_eventFtp:function(){if(this.ftp.visible)this.ftp.hide();else{this.ftp.empty();var e=this;this.ftp.append(new p.default({collection:this.collection,ftp_upload_site:this.ftp_upload_site,onadd:function(t){return e.uploadbox.add([{mode:"ftp",name:t.path,size:t.size,path:t.path}])},onremove:function(t){e.collection.remove(t)}}).$el),this.ftp.show()}},_eventCreate:function(){this.uploadbox.add([{name:"New File",size:0,mode:"new"}])},_eventStart:function(){if(!(0==this.counter.announce||this.counter.running>0)){var e=this;this.upload_size=0,this.upload_completed=0,this.collection.each(function(t){"init"==t.get("status")&&(t.set("status","queued"),e.upload_size+=t.get("file_size"))}),this.ui_button.model.set({percentage:0,status:"success"}),this.counter.running=this.counter.announce,this.history_id=this.app.currentHistory(),this.uploadbox.start(),this._updateScreen()}},_eventStop:function(){this.counter.running>0&&(this.ui_button.model.set("status","info"),s(".upload-top-info").html("Queue will pause after completing the current file..."),this.uploadbox.stop())},_eventReset:function(){0==this.counter.running&&(this.collection.reset(),this.counter.reset(),this.uploadbox.reset(),this.select_extension.value(this.options.default_extension),this.select_genome.value(this.options.default_genome),this.ui_button.model.set("percentage",0),this._updateScreen())},updateExtension:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("extension")!=i.options.default_extension&&t||n.set("extension",e)})},updateCollectionType:function(e){this.collectionType=e},updateGenome:function(e,t){var i=this;this.collection.each(function(n){"init"!=n.get("status")||n.get("genome")!=i.options.default_genome&&t||n.set("genome",e)})},_updateScreen:function(){var e="";e=0==this.counter.announce?this.uploadbox.compatible()?"&nbsp;":"Browser does not support Drag & Drop. Try Firefox 4+, Chrome 7+, IE 10+, Opera 12+ or Safari 6+.":0==this.counter.running?"You added "+this.counter.announce+" file(s) to the queue. Add more files or click 'Start' to proceed.":"Please wait..."+this.counter.announce+" out of "+this.counter.running+" remaining.",this.$(".upload-top-info").html(e);var t=0==this.counter.running&&this.counter.announce+this.counter.success+this.counter.error>0,i=0==this.counter.running&&this.counter.announce>0,n=0==this.counter.running&&0==this.counter.announce&&this.counter.success>0&&0==this.counter.error,s=0==this.counter.running,a=this.counter.announce+this.counter.success+this.counter.error>0;this.btnReset[t?"enable":"disable"](),this.btnStart[i?"enable":"disable"](),this.btnStart.$el[i?"addClass":"removeClass"]("btn-primary"),this.btnBuild[n?"enable":"disable"](),this.btnBuild.$el[n?"addClass":"removeClass"]("btn-primary"),this.btnStop[this.counter.running>0?"enable":"disable"](),this.btnLocal[s?"enable":"disable"](),this.btnFtp[s?"enable":"disable"](),this.btnCreate[s?"enable":"disable"](),this.btnFtp.$el[this.ftp_upload_site?"show":"hide"](),this.$(".upload-table")[a?"show":"hide"](),this.$(".upload-helper")[a?"hide":"show"]()},_uploadPercentage:function(e,t){return(this.upload_completed+e*t)/this.upload_size},_template:function(){return'<div class="upload-view-default"><div class="upload-top"><h6 class="upload-top-info"/></div><div class="upload-box"><div class="upload-helper"><i class="fa fa-files-o"/>Drop files here</div><table class="upload-table ui-table-striped" style="display: none;"><thead><tr><th>Name</th><th>Size</th><th>Status</th><th/></tr></thead><tbody/></table></div><div class="upload-footer"><span class="upload-footer-title-compressed">Collection Type:</span><span class="upload-footer-collection-type"/><span class="upload-footer-title-compressed">File Type:</span><span class="upload-footer-extension"/><span class="upload-footer-extension-info upload-icon-button fa fa-search"/> <span class="upload-footer-title-compressed">Genome (set all):</span><span class="upload-footer-genome"/></div><div class="upload-buttons"/></div>'}})}).call(t,i(2),i(1),i(0))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(3),l=a(o),r=i(4),d=a(r),c=i(29),u=(a(c),i(54)),h=a(u),f=i(15),p=a(f),m=i(10);a(m);t.default=e.View.extend({status_classes:{init:"upload-icon-button fa fa-trash-o",queued:"upload-icon fa fa-spinner fa-spin",running:"upload-icon fa fa-spinner fa-spin",success:"upload-icon-button fa fa-check",error:"upload-icon-button fa fa-exclamation-triangle"},initialize:function(e,t){var i=this;this.app=e,this.model=t.model,this.setElement(this._template(t.model)),this.$mode=this.$(".upload-mode"),this.$title=this.$(".upload-title-extended"),this.$text=this.$(".upload-text"),this.$size=this.$(".upload-size"),this.$info_text=this.$(".upload-info-text"),this.$info_progress=this.$(".upload-info-progress"),this.$text_content=this.$(".upload-text-content"),this.$symbol=this.$(".upload-symbol"),this.$progress_bar=this.$(".upload-progress-bar"),this.$percentage=this.$(".upload-percentage"),this.settings=new p.default.View({title:(0,l.default)("Upload configuration"),container:this.$(".upload-settings"),placement:"bottom"});this.app.select_genome.value(),this.app.select_extension.value();this.$symbol.on("click",function(){i._removeRow()}),this.$text_content.on("change input",function(e){i.model.set({url_paste:n(e.target).val(),file_size:n(e.target).val().length})}),this.listenTo(this.model,"change:percentage",function(){i._refreshPercentage()}),this.listenTo(this.model,"change:status",function(){i._refreshStatus()}),this.listenTo(this.model,"change:info",function(){i._refreshInfo()}),this.listenTo(this.model,"change:file_size",function(){i._refreshFileSize()}),this.listenTo(this.model,"remove",function(){i.remove()}),this.app.collection.on("reset",function(){i.remove()})},render:function(){var e=this.model.attributes;this.$title.html(s.escape(e.file_name)),this.$size.html(d.default.bytesToString(e.file_size)),this.$mode.removeClass().addClass("upload-mode").addClass("text-primary"),"new"==e.file_mode?(this.$text.css({width:this.$el.width()-16+"px",top:this.$el.height()-8+"px"}).show(),this.$el.height(this.$el.height()-8+this.$text.height()+16),this.$mode.addClass("fa fa-edit")):"local"==e.file_mode?this.$mode.addClass("fa fa-laptop"):"ftp"==e.file_mode&&this.$mode.addClass("fa fa-folder-open-o")},_refreshInfo:function(){var e=this.model.get("info");e?this.$info_text.html("<strong>Failed: </strong>"+e).show():this.$info_text.hide()},_refreshPercentage:function(){var e=parseInt(this.model.get("percentage"));this.$progress_bar.css({width:e+"%"}),this.$percentage.html(100!=e?e+"%":"Adding to history...")},_refreshStatus:function(){var e=this.model.get("status");this.$symbol.removeClass().addClass("upload-symbol").addClass(this.status_classes[e]),this.model.set("enabled","init"==e);var t=this.model.get("enabled");this.$text_content.attr("disabled",!t),"success"==e&&(this.$el.addClass("success"),this.$percentage.html("100%")),"error"==e&&(this.$el.addClass("danger"),this.$info_progress.hide())},_refreshFileSize:function(){this.$size.html(d.default.bytesToString(this.model.get("file_size")))},_removeRow:function(){-1!==["init","success","error"].indexOf(this.model.get("status"))&&this.app.collection.remove(this.model)},_showSettings:function(){this.settings.visible?this.settings.hide():(this.settings.empty(),this.settings.append(new h.default(this).$el),this.settings.show())},_template:function(e){return'<tr id="upload-row-'+e.id+'" class="upload-row"><td><div class="upload-text-column"><div class="upload-mode"/><div class="upload-title-extended"/><div class="upload-text"><div class="upload-text-info">You can tell Galaxy to download data from web by entering URL in this box (one per line). You can also directly paste the contents of a file.</div><textarea class="upload-text-content form-control"/></div></div></td><td><div class="upload-size"/></td><td><div class="upload-info"><div class="upload-info-text"/><div class="upload-info-progress progress"><div class="upload-progress-bar progress-bar progress-bar-success"/><div class="upload-percentage">0%</div></div></div></td><td><div class="upload-symbol '+this.status_classes.init+'"/></td></tr>'}})}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e){function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(6),a=n(s),o=i(251),l=n(o),r=i(252),d=n(r),c=i(3),u=n(c),h=e.View.extend({initialize:function(t,i){var n=this;this.userIsAnonymous=Galaxy.user.isAnonymous(),this.allow_user_dataset_purge=i.config.allow_user_dataset_purge,this.root=i.root,this.historyView=new d.default.CurrentHistoryView({className:d.default.CurrentHistoryView.prototype.className+" middle",purgeAllowed:this.allow_user_dataset_purge,linkTarget:"galaxy_main"}),Galaxy.currHistoryPanel=this.historyView,Galaxy.currHistoryPanel.listenToGalaxy(Galaxy),this.buttonRefresh=new a.default.ButtonLink({id:"history-refresh-button",title:(0,u.default)("Refresh history"),cls:"panel-header-button",icon:"fa fa-refresh",onclick:function(){n.historyView.loadCurrentHistory()}}),this.buttonOptions=new a.default.ButtonLink({id:"history-options-button",title:(0,u.default)("History options"),cls:"panel-header-button",target:"galaxy_main",icon:"fa fa-cog",href:this.root+"root/history_options"}),this.buttonViewMulti=new a.default.ButtonLink({id:"history-view-multi-button",title:(0,u.default)("View all histories"),cls:"panel-header-button",icon:"fa fa-columns",href:this.root+"history/view_multiple"}),this.model=new e.Model({cls:"history-right-panel",title:(0,u.default)("History"),buttons:[this.buttonRefresh,this.buttonOptions,this.buttonViewMulti]}),this.setElement(this._template()),this.historyView.setElement(this.$el),this.historyView.connectToQuotaMeter(Galaxy.quotaMeter),this.historyView.loadCurrentHistory(),Galaxy.listenTo(this.historyView,"history-size-change",function(){Galaxy.user.fetch({url:Galaxy.user.urlRoot()+"/"+(Galaxy.user.id||"current")})})},render:function(){this.optionsMenu=(0,l.default)(this.buttonOptions.$el,{anonymous:this.userIsAnonymous,purgeAllowed:this.allow_user_dataset_purge,root:this.root}),this.buttonViewMulti.$el[this.userIsAnonymous?"hide":"show"]()},_template:function(e){return['<div id="current-history-panel" class="history-panel middle"/>'].join("")},toString:function(){return"historyPanel"}});t.default=h}).call(t,i(2))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}function a(e,t,i){return n.clone(m).filter(function(n){return!(e&&!n.anon)&&(!(!t&&n.purge)&&(n.href&&(n.href=i+n.href,n.target=n.target||"galaxy_main"),n.confirm&&(n.func=function(){confirm(n.confirm)&&(galaxy_main.location=n.href)}),!0))})}Object.defineProperty(t,"__esModule",{value:!0});var o=i(42),l=s(o),r=i(112),d=s(r),c=i(5),u=(s(c),i(3)),h=s(u),f=i(34),p=s(f),m=[{html:(0,h.default)("History Lists"),header:!0},{html:(0,h.default)("Saved Histories"),href:"histories/list",target:"_top"},{html:(0,h.default)("Histories Shared with Me"),href:"histories/list_shared",target:"_top"},{html:(0,h.default)("Current History"),header:!0,anon:!0},{html:(0,h.default)("Create New"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.createNewHistory()}},{html:(0,h.default)("Copy History"),func:function(){(0,d.default)(Galaxy.currHistoryPanel.model).done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Share or Publish"),href:"history/sharing"},{html:(0,h.default)("Show Structure"),href:"history/display_structured",anon:!0},{html:(0,h.default)("Extract Workflow"),href:"workflow/build_from_current_history"},{html:(0,h.default)("Delete"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history?"))&&Galaxy.currHistoryPanel.model._delete().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Permanently"),purge:!0,anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete the current history permanently? This cannot be undone."))&&Galaxy.currHistoryPanel.model.purge().done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Dataset Actions"),header:!0,anon:!0},{html:(0,h.default)("Copy Datasets"),href:"dataset/copy_datasets"},{html:(0,h.default)("Dataset Security"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/permissions?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Resume Paused Jobs"),href:"history/resume_paused_jobs?current=True",anon:!0},{html:(0,h.default)("Collapse Expanded Datasets"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.collapseAll()}},{html:(0,h.default)("Unhide Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really unhide all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"unhide"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Delete Hidden Datasets"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm((0,h.default)("Really delete all hidden datasets?"))&&e.post(Galaxy.root+"history/adjust_hidden",{user_action:"delete"},function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:(0,h.default)("Purge Deleted Datasets"),confirm:(0,h.default)("Really delete all deleted datasets permanently? This cannot be undone."),href:"history/purge_deleted_datasets",purge:!0,anon:!0},{html:(0,h.default)("Downloads"),header:!0},{html:(0,h.default)("Export Tool Citations"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.router&&Galaxy.router.push("/histories/citations?id="+Galaxy.currHistoryPanel.model.id)}},{html:(0,h.default)("Export History to File"),href:"history/export_archive?preview=True",anon:!0},{html:(0,h.default)("Other Actions"),header:!0},{html:(0,h.default)("Import from File"),href:"histories/import",target:"_top"}];p.default.add({url:"api/webhooks/history-menu/all",async:!1,callback:function(t){var i=[];e.each(t.models,function(e,t){var n=t.toJSON();n.activate&&i.push({html:(0,h.default)(n.config.title),anon:!0})}),i.length>0&&(i.unshift({html:(0,h.default)("Webhooks"),header:!0}),e.merge(m,i))}});var g=function(e,t){t=t||{};var i=void 0===t.anonymous||t.anonymous,n=t.purgeAllowed||!1,s=a(i,n,Galaxy.root);return new l.default(e,s)};t.default=g}).call(t,i(0),i(1))},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(62),l=(a(o),i(254)),r=a(l),d=i(5),c=a(d),u=i(3),h=a(u),f=c.default.SessionStorageModel.extend({defaults:{tagsEditorShown:!1,annotationEditorShown:!1,scrollPosition:0},toString:function(){return"HistoryViewPrefs("+JSON.stringify(this.toJSON())+")"}});f.storageKey=function(){return"history-panel"};var p=r.default.HistoryViewEdit,m=p.extend({className:p.prototype.className+" current-history-panel",HDCAViewClass:p.prototype.HDCAViewClass.extend({foldoutStyle:"drilldown"}),emptyMsg:[(0,h.default)("This history is empty"),". ",(0,h.default)("You can "),'<a class="uploader-link" href="javascript:void(0)">',(0,h.default)("load your own data"),"</a>",(0,h.default)(" or "),'<a class="get-data-link" href="javascript:void(0)">',(0,h.default)("get data from an external source"),"</a>"].join(""),initialize:function(t){t=t||{},this.preferences=new f(e.extend({id:f.storageKey()},e.pick(t,e.keys(f.prototype.defaults)))),p.prototype.initialize.call(this,t),this.panelStack=[],this.currentContentId=t.currentContentId||null},_setUpListeners:function(){p.prototype._setUpListeners.call(this);var e=this;this.on("new-model",function(){e.preferences.set("scrollPosition",0)})},loadCurrentHistory:function(){return this.loadHistory(null,{url:Galaxy.root+"history/current_history_json"})},switchToHistory:function(e,t){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to switch histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(e,{url:Galaxy.root+"history/set_as_current?id="+e})},createNewHistory:function(e){return Galaxy.user.isAnonymous()?(this.trigger("error",(0,h.default)("You must be logged in to create histories"),(0,h.default)("Anonymous user")),n.when()):this.loadHistory(null,{url:Galaxy.root+"history/create_new_current"})},setModel:function(e,t,i){return p.prototype.setModel.call(this,e,t,i),this.model&&this.model.id&&(this.log("checking for updates"),this.model.checkForUpdates()),this},_setUpModelListeners:function(){return p.prototype._setUpModelListeners.call(this),this.listenTo(this.model,{"change:nice_size change:size":function(){this.trigger("history-size-change",this,this.model,arguments)},"change:id":function(){this.once("loading-done",function(){this.model.checkForUpdates()})}})},_setUpCollectionListeners:function(){p.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,"state:ready",function(e,t,i){e.get("visible")||this.collection.storage.includeHidden()||this.removeItemView(e)})},_setUpBehaviors:function(t){t=t||this.$el;var i=this;return p.prototype._setUpBehaviors.call(i,t),this._debouncedScrollCaptureHandler||(this._debouncedScrollCaptureHandler=e.debounce(function(){i.$el.is(":visible")&&i.preferences.set("scrollPosition",n(this).scrollTop())},40)),i.$scrollContainer(t).off("scroll",this._debouncedScrollCaptureHandler).on("scroll",this._debouncedScrollCaptureHandler),i},_buildNewRender:function(){if(!this.model)return n();var e=p.prototype._buildNewRender.call(this);return e.find(".search").prependTo(e.find("> .controls")),this._renderQuotaMessage(e),e},_renderQuotaMessage:function(e){return e=e||this.$el,n(this.templates.quotaMsg({},this)).prependTo(e.find(".messages"))},_renderTags:function(e){var t=this;p.prototype._renderTags.call(t,e),t.preferences.get("tagsEditorShown")&&t.tagsEditor.toggle(!0),t.listenTo(t.tagsEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("tagsEditorShown",e.hidden)})},_renderAnnotation:function(e){var t=this;p.prototype._renderAnnotation.call(t,e),t.preferences.get("annotationEditorShown")&&t.annotationEditor.toggle(!0),t.listenTo(t.annotationEditor,"hiddenUntilActivated:shown hiddenUntilActivated:hidden",function(e){t.preferences.set("annotationEditorShown",e.hidden)})},_swapNewRender:function(t){p.prototype._swapNewRender.call(this,t);var i=this;return e.delay(function(){var e=i.preferences.get("scrollPosition");e&&i.scrollTo(e,0)},10),this},_attachItems:function(e){p.prototype._attachItems.call(this,e);var t=this;return t.currentContentId&&t._setCurrentContentById(t.currentContentId),this},addItemView:function(e,t,i){var n=p.prototype.addItemView.call(this,e,t,i);return n&&this.panelStack.length?this._collapseDrilldownPanel():n},_setUpItemViewListeners:function(e){var t=this;return p.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{"expanded:drilldown":function(e,t){this._expandDrilldownPanel(t)},"collapsed:drilldown":function(e,t){this._collapseDrilldownPanel(t)}})},setCurrentContent:function(e){this.$(".history-content.current-content").removeClass("current-content"),e?(e.$el.addClass("current-content"),this.currentContentId=e.model.id):this.currentContentId=null},_setCurrentContentById:function(e){var t=this.viewFromModelId(e)||null;this.setCurrentContent(t)},_expandDrilldownPanel:function(e){this.panelStack.push(e),this.$controls().add(this.$list()).hide(),e.parentName=this.model.get("name"),e.delegateEvents().render().$el.appendTo(this.$el)},_collapseDrilldownPanel:function(e){this.panelStack.pop(),this.$controls().add(this.$list()).show()},events:e.extend(e.clone(p.prototype.events),{"click .uploader-link":function(e){Galaxy.upload.show(e)},"click .get-data-link":function(e){var t=n(".toolMenuContainer");t.parent().scrollTop(0),t.find('span:contains("Get Data")').click()}}),listenToGalaxy:function(t){this.listenTo(t,{"center-frame:load":function(t){var i=t.fullpath,n=null,s={display:/datasets\/([a-f0-9]+)\/display/,edit:/datasets\/([a-f0-9]+)\/edit/,report_error:/dataset\/errors\?id=([a-f0-9]+)/,rerun:/tool_runner\/rerun\?id=([a-f0-9]+)/,show_params:/datasets\/([a-f0-9]+)\/show_params/};e.find(s,function(t,s){return n=e.result(i.match(t),1)}),this._setCurrentContentById(n?"dataset-"+n:null)},"center-panel:load":function(e){this._setCurrentContentById()}})},connectToQuotaMeter:function(e){return e?(this.listenTo(e,"quota:over",this.showQuotaMessage),this.listenTo(e,"quota:under",this.hideQuotaMessage),this.on("rendered rendered:initial",function(){e&&e.isOverQuota()&&this.showQuotaMessage()}),this):this},clearMessages:function(t){var i=e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget);return i=i.not(".quota-message"),i.fadeOut(this.fxSpeed,function(){n(this).remove()}),this},showQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")&&e.slideDown(this.fxSpeed)},hideQuotaMessage:function(){var e=this.$(".quota-message");e.is(":hidden")||e.slideUp(this.fxSpeed)},unhideHidden:function(){var e=this;return confirm((0,h.default)("Really unhide all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{visible:!0}).done(function(){e.model.contents.includeHidden||e.renderItems()}):s.when()},deleteHidden:function(){var e=this;return confirm((0,h.default)("Really delete all hidden datasets?"))?e.model.contents._filterAndUpdate({visible:!1,deleted:"",purged:""},{deleted:!0,visible:!0}):s.when()},toString:function(){return"CurrentHistoryView("+(this.model?this.model.get("name"):"")+")"}});m.prototype.templates=function(){var t=c.default.wrapTemplate(['<div class="quota-message errormessage">',(0,h.default)("You are over your disk quota"),". ",(0,h.default)("Tool execution is on hold until your disk usage drops below your allocated quota"),".","</div>"],"history");return e.extend(e.clone(p.prototype.templates),{quotaMsg:t})}(),t.default={CurrentHistoryView:m}}).call(t,i(1),i(0),i(0))},function(e,t,i){"use strict";Object.defineProperty(t,"__esModule",{value:!0});var n=i(2),s=function(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(t[i]=e[i]);return t.default=e,t}(n),a=i(116),o=function(e){return e&&e.__esModule?e:{default:e}}(a),l=["new","queued","running"],r=["error","deleted"],d=s.Model.extend({url:function(){return Galaxy.root+"api/histories/"+this.attributes.history_id+"/contents/dataset_collections/"+this.attributes.collection_id+"/jobs_summary"},hasDetails:function(){return this.has("populated_state")},new:function(){return!this.hasDetails()||"new"==this.get("populated_state")},errored:function(){return"error"===this.get("populated_state")||this.anyWithStates(r)},states:function(){return this.get("states")||{}},anyWithState:function(e){return(this.states()[e]||0)>0},anyWithStates:function(e){var t=this.states();for(var i in e)if((t[e[i]]||0)>0)return!0;return!1},numWithStates:function(e){var t=this.states(),i=0;for(var n in e)i+=t[e[n]]||0;return i},numInError:function(){return this.numWithStates(r)},running:function(){return this.anyWithState("running")},terminal:function(){return!this.new()&&!this.anyWithStates(l)},jobCount:function(){var e=this.states(),t=0;for(var i in e)t+=e[i];return t},toString:function(){return"JobStatesSummary(id="+this.get("id")+")"}}),c=s.Collection.extend({model:d,initialize:function(){this.updateTimeoutId=null,this.active=!0},url:function(){var e=this.models.filter(function(e){return!e.terminal()}),t=e.map(function(e){return e.get("id")}).join(","),i=e.map(function(e){return e.get("model")}).join(",");return Galaxy.root+"api/histories/"+this.historyId+"/jobs_summary?ids="+t+"&types="+i},monitor:function(){var e=this;if(this.clearUpdateTimeout(),this.active){var t=function(){e.updateTimeoutId=setTimeout(function(){e.monitor()},2e3)},i=this.models.filter(function(e){return!e.terminal()});if(i.length,!1){var n=i.map(function(e){return function(){return e.fetch()}});return new o.default.AjaxQueue(n).done(t)}i.length>0?this.fetch({remove:!1}).done(t):t()}},clearUpdateTimeout:function(){this.updateTimeoutId&&(clearTimeout(this.updateTimeoutId),this.updateTimeoutId=null)},toString:function(){return"JobStatesSummaryCollection()"}});t.default={JobStatesSummary:d,JobStatesSummaryCollection:c,FETCH_STATE_ON_ADD:!1}},function(e,t,i){"use strict";(function(e,n,s){function a(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var o=i(255),l=a(o),r=i(63),d=(a(r),i(16)),c=(a(d),i(115)),u=a(c),h=i(257),f=a(h),p=i(258),m=a(p),g=i(39),_=a(g),v=i(124),y=a(v),w=i(58),b=a(w),x=i(261),C=a(x),$=i(262),k=a($),S=i(21),T=a(S),P=i(42),E=(a(P),i(5)),D=a(E),A=i(3),M=a(A);i(20);var I=l.default.HistoryView,L=I.extend({HDAViewClass:f.default.HDAListItemEdit,HDCAViewClass:m.default.HDCAListItemEdit,initialize:function(e){e=e||{},I.prototype.initialize.call(this,e),this.tagsEditor=null,this.dragItems=!0,this.annotationEditor=null,this.purgeAllowed=e.purgeAllowed||!1,this.annotationEditorShown=e.annotationEditorShown||!1,this.tagsEditorShown=e.tagsEditorShown||!1},_setUpListeners:function(){return I.prototype._setUpListeners.call(this),this.on({"droptarget:drop":function(e,t){this.dataDropped(t),this.dropTargetOff()},"view:attached view:removed":function(){this._renderCounts()},"search:loading-progress":this._renderSearchProgress,"search:searching":this._renderSearchFindings})},_setUpModelListeners:function(){return I.prototype._setUpModelListeners.call(this),this.listenTo(this.model,"change:size",this.updateHistoryDiskSize),this},_setUpCollectionListeners:function(){return I.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"change:deleted":this._handleItemDeletedChange,"change:visible":this._handleItemVisibleChange,"change:purged":function(e){this.model.fetch()},"fetching-deleted":function(e){this.$("> .controls .deleted-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-hidden":function(e){this.$("> .controls .hidden-count").html("<i>"+(0,M.default)("loading...")+"</i>")},"fetching-deleted-done fetching-hidden-done":this._renderCounts}),this},_buildNewRender:function(){var e=I.prototype._buildNewRender.call(this);return this.model?(Galaxy&&Galaxy.user&&Galaxy.user.id&&Galaxy.user.id===this.model.get("user_id")&&(this._renderTags(e),this._renderAnnotation(e)),e):e},updateHistoryDiskSize:function(){this.$(".history-size").text(this.model.get("nice_size"))},renderItems:function(e){var t=I.prototype.renderItems.call(this,e);return this.searchFor?this._renderSearchFindings(e):this._renderCounts(e),t},_renderCounts:function(t){t=t instanceof e?t:this.$el;var i=this.templates.counts(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i)},_renderTags:function(e){var t=this;this.tagsEditor=new _.default.TagsEditor({model:this.model,el:e.find(".controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDATagEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDATagEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".controls .actions"))})},_renderAnnotation:function(e){var t=this;this.annotationEditor=new y.default.AnnotationEditor({model:this.model,el:e.find(".controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){t.toggleHDAAnnotationEditors(!0,t.fxSpeed)},onhide:function(){t.toggleHDAAnnotationEditors(!1,t.fxSpeed)},$activator:(0,T.default)({title:(0,M.default)("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".controls .actions"))})},_setUpBehaviors:function(e){if(e=e||this.$el,I.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()&&Galaxy.user.id===this.model.get("user_id")){var t=this;e.find("> .controls .name").attr("title",(0,M.default)("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var i=t.model.get("name");e&&e!==i?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls .name").text(i)}})}},multiselectActions:function(){var e=this,t=[{html:(0,M.default)("Hide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.hide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Unhide datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.unhide;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Delete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.delete;e.getSelectedModels().ajaxQueue(t)}},{html:(0,M.default)("Undelete datasets"),func:function(){var t=u.default.HistoryDatasetAssociation.prototype.undelete;e.getSelectedModels().ajaxQueue(t)}}];return e.purgeAllowed&&t.push({html:(0,M.default)("Permanently delete datasets"),func:function(){if(confirm((0,M.default)("This will permanently remove the data in your datasets. Are you sure?"))){var t=u.default.HistoryDatasetAssociation.prototype.purge;e.getSelectedModels().ajaxQueue(t)}}}),t=t.concat(e._collectionActions())},_collectionActions:function(){var e=this;return[{html:(0,M.default)("Build Dataset List"),func:function(){e.buildCollection("list")}},{html:(0,M.default)("Build Dataset Pair"),func:function(){e.buildCollection("paired")}},{html:(0,M.default)("Build List of Dataset Pairs"),func:function(){e.buildCollection("list:paired")}}]},buildCollection:function(e,t,i){var n,s=this,t=t||s.getSelectedModels(),i=i||!1;"list"==e?n=b.default.createListCollection:"paired"==e?n=C.default.createPairCollection:"list:paired"==e?n=k.default.createListOfPairsCollection:console.warn("Unknown collectionType encountered "+e),n(t,i).done(function(){s.model.refresh()})},_getItemViewOptions:function(e){var t=I.prototype._getItemViewOptions.call(this,e);return n.extend(t,{purgeAllowed:this.purgeAllowed,tagsEditorShown:this.tagsEditor&&!this.tagsEditor.hidden,annotationEditorShown:this.annotationEditor&&!this.annotationEditor.hidden}),t},_handleItemDeletedChange:function(e){e.get("deleted")?this._handleItemDeletion(e):this._handleItemUndeletion(e),this._renderCounts()},_handleItemDeletion:function(e){var t=this.model.get("contents_active");t.deleted+=1,t.active-=1,this.model.contents.includeDeleted||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUndeletion:function(e){var t=this.model.get("contents_active");t.deleted-=1,this.model.contents.includeDeleted||(t.active-=1),this.model.set("contents_active",t)},_handleItemVisibleChange:function(e){e.hidden()?this._handleItemHidden(e):this._handleItemUnhidden(e),this._renderCounts()},_handleItemHidden:function(e){var t=this.model.get("contents_active");t.hidden+=1,t.active-=1,this.model.contents.includeHidden||this.removeItemView(e),this.model.set("contents_active",t)},_handleItemUnhidden:function(e){var t=this.model.get("contents_active");t.hidden-=1,this.model.contents.includeHidden||(t.active-=1),this.model.set("contents_active",t)},toggleHDATagEditors:function(e,t){n.each(this.views,function(i){i.tagsEditor&&i.tagsEditor.toggle(e,t)})},toggleHDAAnnotationEditors:function(e,t){n.each(this.views,function(i){i.annotationEditor&&i.annotationEditor.toggle(e,t)})},events:n.extend(n.clone(I.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click .toggle-deleted-link":function(e){this.toggleShowDeleted()},"click .toggle-hidden-link":function(e){this.toggleShowHidden()}}),_renderSearchProgress:function(e,t){var i=e+t;return this.$("> .controls .subtitle").html(["<i>",(0,M.default)("Searching "),i,"/",this.model.contentsShown(),"</i>"].join(""))},_renderSearchFindings:function(t){t=t instanceof e?t:this.$el;var i=this.templates.found(this.model.toJSON(),this);return t.find("> .controls .subtitle").html(i),this},dropTargetOn:function(){if(this.dropTarget)return this;this.dropTarget=!0;var e={dragenter:n.bind(this.dragenter,this),dragover:n.bind(this.dragover,this),dragleave:n.bind(this.dragleave,this),drop:n.bind(this.drop,this)},t=this._renderDropTarget();this.$list().before([this._renderDropTargetHelp(),t]);for(var i in e)e.hasOwnProperty(i)&&t.on(i,e[i]);return this},_renderDropTarget:function(){return this.$(".history-drop-target").remove(),s("<div/>").addClass("history-drop-target")},_renderDropTargetHelp:function(){return this.$(".history-drop-target-help").remove(),s("<div/>").addClass("history-drop-target-help").text((0,M.default)("Drag datasets here to copy them to the current history"))},dropTargetOff:function(){if(!this.dropTarget)return this;this.dropTarget=!1;var e=this.$(".history-drop-target").get(0);for(var t in this._dropHandlers)this._dropHandlers.hasOwnProperty(t)&&e.off(t,this._dropHandlers[t]);return this.$(".history-drop-target").remove(),this.$(".history-drop-target-help").remove(),this},dropTargetToggle:function(){return this.dropTarget?this.dropTargetOff():this.dropTargetOn(),this},dragenter:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","2px solid black")},dragover:function(e){e.preventDefault(),e.stopPropagation()},dragleave:function(e){e.preventDefault(),e.stopPropagation(),this.$(".history-drop-target").css("border","1px dashed black")},drop:function(e){e.preventDefault();var t=this,i=e.originalEvent.dataTransfer,n=i.getData("text");i.dropEffect="move";try{n=JSON.parse(n)}catch(e){t.warn("error parsing JSON from drop:",n)}return t.trigger("droptarget:drop",e,n,t),!1},dataDropped:function(t){var i=this;return n.isObject(t)&&"HistoryDatasetAssociation"===t.model_class&&t.id?0!==i.contents.currentPage?i.contents.fetchPage(0).then(function(){return i.model.contents.copy(t.id)}):i.model.contents.copy(t.id):e.when()},toString:function(){return"HistoryViewEdit("+(this.model?this.model.get("name"):"")+")"}});L.prototype.templates=function(){var e=D.default.wrapTemplate(["<% var shown = Math.max( view.views.length, history.contents_active.active ) %>","<% if( shown ){ %>",'<span class="shown-count">',"<%- shown %> ",(0,M.default)("shown"),"</span>","<% } %>","<% if( history.contents_active.deleted ){ %>",'<span class="deleted-count">',"<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>","<% } else { %>","<%- history.contents_active.deleted %> ",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("deleted"),"</a>","<% } %>","</span>","<% } %>","<% if( history.contents_active.hidden ){ %>",'<span class="hidden-count">',"<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>","<%- history.contents_active.hidden %> ",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hidden"),"</a>","<% } %>","</span>","<% } %>"],"history"),t=D.default.wrapTemplate([(0,M.default)("Found")," <%- view.views.length %>, ","<% if( history.contents_active.deleted ){ %>","<% if( view.model.contents.includeDeleted ){ %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("hide deleted"),"</a>, ","<% } else { %>",'<a class="toggle-deleted-link" href="javascript:void(0);">',(0,M.default)("show deleted"),"</a>, ","<% } %>","<% } %>","<% if( history.contents_active.hidden ){ %>","<% if( view.model.contents.includeHidden ){ %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("hide hidden"),"</a>","<% } else { %>",'<a class="toggle-hidden-link" href="javascript:void(0);">',(0,M.default)("show hidden"),"</a>","<% } %>","<% } %>"],"history");return n.extend(n.clone(I.prototype.templates),{counts:e,found:t})}(),t.default={HistoryViewEdit:L}}).call(t,i(0),i(1),i(0))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(117),o=s(a),l=i(62),r=s(l),d=i(63),c=s(d),u=i(64),h=(s(u),i(119)),f=s(h),p=i(121),m=s(p),g=i(24),_=(s(g),i(113)),v=s(_),y=i(21),w=s(y),b=i(5),x=s(b),C=i(3),$=s(C);i(118);var k=o.default.ModelListPanel,S=k.extend({_logNamespace:"history",HDAViewClass:f.default.HDAListItemView,HDCAViewClass:m.default.HDCAListItemView,collectionClass:c.default.HistoryContents,modelCollectionKey:"contents",tagName:"div",className:k.prototype.className+" history-panel",emptyMsg:(0,$.default)("This history is empty"),noneFoundMsg:(0,$.default)("No matching datasets found"),searchPlaceholder:(0,$.default)("search datasets"),initialize:function(e){k.prototype.initialize.call(this,e),this.linkTarget=e.linkTarget||"_blank"},_createDefaultCollection:function(){return new this.collectionClass([],{history:this.model})},freeModel:function(){return k.prototype.freeModel.call(this),this.model&&this.model.stopPolling(),this},_setUpListeners:function(){k.prototype._setUpListeners.call(this),this.on({error:function(e,t,i,n,s){this.errorHandler(e,t,i,n,s)},"views:ready view:attached view:removed":function(e){this._renderSelectButton()},"view:attached":function(e){this.scrollTo(0)}})},loadHistory:function(t,i,n){var s=this;return n=e.extend(n||{silent:!0}),this.info("loadHistory:",t,i,n),this.setModel(new r.default.History({id:t})),n.silent=!0,this.trigger("loading"),this.model.fetchWithContents(i,n).always(function(){s.render(),s.trigger("loading-done")})},refreshContents:function(e){return this.model?this.model.refresh(e):n.when()},_setUpCollectionListeners:function(){return k.prototype._setUpCollectionListeners.call(this),this.listenTo(this.collection,{"fetching-more":function(){this._toggleContentsLoadingIndicator(!0),this.$emptyMessage().hide()},"fetching-more-done":function(){this._toggleContentsLoadingIndicator(!1)}})},_showLoadingIndicator:function(t,i,s){var a=n('<div class="loading-indicator"/>');this.$el.html(a.text(t).slideDown(e.isUndefined(i)?this.fxSpeed:i))},_hideLoadingIndicator:function(t){this.$(".loading-indicator").slideUp(e.isUndefined(t)?this.fxSpeed+200:t,function(){n(this).remove()})},_buildNewRender:function(){var e=k.prototype._buildNewRender.call(this);return this._renderSelectButton(e),e},_renderSelectButton:function(e){if(e=e||this.$el,!this.multiselectActions().length)return null;if(!this.views.length)return this.hideSelectors(),e.find(".controls .actions .show-selectors-btn").remove(),null;var t=e.find(".controls .actions .show-selectors-btn");return t.length?t:(0,w.default)({title:(0,$.default)("Operations on multiple datasets"),classes:"show-selectors-btn",faIcon:"fa-check-square-o"}).prependTo(e.find(".controls .actions"))},_renderEmptyMessage:function(e){var t=this.$emptyMessage(e);return this.model.get("contents_active").active<=0?t.empty().append(this.emptyMsg).show():this.searchFor&&this.model.contents.haveSearchDetails()&&!this.views.length?t.empty().append(this.noneFoundMsg).show():(t.hide(),n())},$scrollContainer:function(e){return this.$list(e)},_toggleContentsLoadingIndicator:function(e){e?this.$list().html('<div class="contents-loading-indicator"><span class="fa fa-2x fa-spinner fa-spin"/></div>'):this.$list().find(".contents-loading-indicator").remove()},renderItems:function(e){e=e||this.$el;var t=this.$list(e);n(".tooltip").remove(),t.empty(),this.views=[];var i=this._filterCollection();return i.length?(this._renderPagination(e),this.views=this._renderSomeItems(i,t)):e.find("> .controls .list-pagination").empty(),this._renderEmptyMessage(e).toggle(!i.length),this.trigger("views:ready",this.views),this.views},_renderPagination:function(e){var t=e.find("> .controls .list-pagination");return this.searchFor||!this.model.contents.shouldPaginate()?t.empty():(t.html(this.templates.pagination({current:this.model.contents.currentPage+1,last:this.model.contents.getLastPage()+1},this)),t.find("select.pages").tooltip(),t)},_renderSomeItems:function(e,t){var i=this,n=[];return t.append(e.map(function(e){var t=i._createItemView(e);return n.push(t),i._renderItemView$el(t)})),n},_filterItem:function(e){var t=this.model.contents;return(t.includeHidden||!e.hidden())&&(t.includeDeleted||!e.isDeletedOrPurged())&&k.prototype._filterItem.call(this,e)},_getItemViewClass:function(e){var t=e.get("history_content_type");switch(t){case"dataset":return this.HDAViewClass;case"dataset_collection":return this.HDCAViewClass}throw new TypeError("Unknown history_content_type: "+t)},_getItemViewOptions:function(t){var i=k.prototype._getItemViewOptions.call(this,t);return e.extend(i,{linkTarget:this.linkTarget,expanded:this.model.contents.storage.isExpanded(t.id),hasUser:this.model.ownedByCurrUser()})},_setUpItemViewListeners:function(e){var t=this;return k.prototype._setUpItemViewListeners.call(t,e),t.listenTo(e,{expanded:function(e){t.model.contents.storage.addExpanded(e.model)},collapsed:function(e){t.model.contents.storage.removeExpanded(e.model)}})},collapseAll:function(){this.model.contents.storage.clearExpanded(),k.prototype.collapseAll.call(this)},getSelectedModels:function(){var e=k.prototype.getSelectedModels.call(this);return e.historyId=this.collection.historyId,e},events:e.extend(e.clone(k.prototype.events),{"click .show-selectors-btn":"toggleSelectors","click > .controls .prev":"_clickPrevPage","click > .controls .next":"_clickNextPage","change > .controls .pages":"_changePageSelect","click .messages [class$=message]":"clearMessages"}),_clickPrevPage:function(e){this.model.stopPolling(),this.model.contents.fetchPrevPage()},_clickNextPage:function(e){this.model.stopPolling(),this.model.contents.fetchNextPage()},_changePageSelect:function(e){this.model.stopPolling();var t=n(e.currentTarget).val();this.model.contents.fetchPage(t)},toggleShowDeleted:function(e,t){e=void 0!==e?e:!this.model.contents.includeDeleted;var i=this.model.contents;return i.setIncludeDeleted(e,t),this.trigger("show-deleted",e),i.fetchCurrentPage({renderAll:!0}),e},toggleShowHidden:function(e,t,i){e=void 0!==e?e:!this.model.contents.includeHidden;var n=this.model.contents;return n.setIncludeHidden(e,i),this.trigger("show-hidden",e),n.fetchCurrentPage({renderAll:!0}),e},_firstSearch:function(e){var t=this;if(this.log("onFirstSearch",e),this.model.contents.haveSearchDetails())return void this.searchItems(e);this.$("> .controls .search-input").searchInput("toggle-loading"),this.searchFor=e;this.model.contents.progressivelyFetchDetails({silent:!0}).progress(function(e,i,n){t.renderItems(),t.trigger("search:loading-progress",i,n)}).always(function(){t.$el.find("> .controls .search-input").searchInput("toggle-loading")}).done(function(){t.searchItems(e,"force")})},clearSearch:function(e){var t=this;return this.searchFor?(this.searchFor="",this.trigger("search:clear",this),this.$("> .controls .search-query").val(""),this.model.contents.fetchCurrentPage({silent:!0}).done(function(){t.renderItems()}),this):this},errorHandler:function(t,i,n){if(!i||0!==i.status||0!==i.readyState){if(this.error(t,i,n),e.isString(t)&&e.isString(i)){var s=t,a=i;return v.default.errorModal(s,a,n)}return i&&502===i.status?v.default.badGatewayErrorModal():v.default.ajaxErrorModal(t,i,n)}},clearMessages:function(t){return(e.isUndefined(t)?this.$messages().children('[class$="message"]'):n(t.currentTarget)).fadeOut(this.fxSpeed,function(){n(this).remove()}),this},scrollToHid:function(t){return this.scrollToItem(e.first(this.viewsWhereModel({hid:t})))},ordinalIndicator:function(e){var t=""+e;switch(t.charAt(t.length-1)){case"1":return t+"st";case"2":return t+"nd";case"3":return t+"rd";default:return t+"th"}},toString:function(){return"HistoryView("+(this.model?this.model.get("name"):"")+")"}});S.prototype.templates=function(){var t=function(){return'<div>\n            <div class="controls"></div>\n            <ul class="list-items"></ul>\n            <div class="empty-message infomessagesmall"></div>\',\n        </div>'},i=x.default.wrapTemplate(['<div class="controls">','<div class="title">','<div class="name"><%- history.name %></div>',"</div>",'<div class="subtitle"></div>','<div class="history-size"><%- history.nice_size %></div>','<div class="actions"></div>','<div class="messages">',"<% if( history.deleted && history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been purged and deleted"),"</div>","<% } else if( history.deleted ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been deleted"),"</div>","<% } else if( history.purged ){ %>",'<div class="deleted-msg warningmessagesmall">',(0,$.default)("This history has been purged"),"</div>","<% } %>","<% if( history.message ){ %>",'<div class="<%= history.message.level || "info" %>messagesmall">',"<%= history.message.text %>","</div>","<% } %>","</div>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="search">','<div class="search-input"></div>',"</div>",'<div class="list-actions">','<div class="btn-group">','<button class="select-all btn btn-default"','data-mode="select">',(0,$.default)("All"),"</button>",'<button class="deselect-all btn btn-default"','data-mode="select">',(0,$.default)("None"),"</button>","</div>",'<div class="list-action-menu btn-group">',"</div>","</div>",'<div class="list-pagination form-inline"></div>',"</div>"],"history"),n=x.default.wrapTemplate(['<button class="prev" <%- pages.current === 1 ? "disabled" : "" %>>previous</button>','<select class="pages form-control" ','title="',(0,$.default)("Click to open and select a page. Begin typing a page number to select it"),'">',"<% _.range( 1, pages.last + 1 ).forEach( function( i ){ %>",'<option value="<%- i - 1 %>" <%- i === pages.current ? "selected" : "" %>>',"<%- view.ordinalIndicator( i ) %> of <%- pages.last %> pages","</option>","<% }); %>","</select>",'<button class="next" <%- pages.current === pages.last ? "disabled" : "" %>>next</button>'],"pages");return e.extend(e.clone(k.prototype.templates),{el:t,controls:i,pagination:n})}(),t.default={HistoryView:S}}).call(t,i(1),i(0))},function(e,t,i){"use strict";function n(e,t){function i(){var i=['<div class="loading-indicator">','<div class="loading-indicator-text">','<span class="fa fa-spinner fa-spin fa-lg"></span>','<span class="loading-indicator-message">loading...</span>',"</div>","</div>"].join("\n"),n=o(i).hide().css(t.css||{position:"fixed"}),s=n.children(".loading-indicator-text");return t.cover?(n.css({"z-index":2,top:e.css("top"),bottom:e.css("bottom"),left:e.css("left"),right:e.css("right"),opacity:.5,"background-color":"white","text-align":"center"}),s=n.children(".loading-indicator-text").css({"margin-top":"20px"})):(s=n.children(".loading-indicator-text").css({margin:"12px 0px 0px 10px",opacity:"0.85",color:"grey"}),s.children(".loading-indicator-message").css({margin:"0px 8px 0px 0px","font-style":"italic"})),n}var n=this;return t=a.default.extend({cover:!1},t||{}),n.show=function(t,s,a){return t=t||"loading...",s=s||"fast",e.parent().find(".loading-indicator").remove(),n.$indicator=i().insertBefore(e),n.message(t),n.$indicator.fadeIn(s,a),n},n.message=function(e){n.$indicator.find("i").text(e)},n.hide=function(e,t){return e=e||"fast",n.$indicator&&n.$indicator.length?n.$indicator.fadeOut(e,function(){n.$indicator.remove(),t&&t()}):t&&t(),n},n}Object.defineProperty(t,"__esModule",{value:!0});var s=i(0),a=function(e){return e&&e.__esModule?e:{default:e}}(s),o=a.default;t.default=n},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(123),o=s(a),l=i(119),r=s(l),d=i(5),c=s(d),u=i(3),h=s(u),f=o.default.DatasetListItemEdit,p=f.extend({className:f.prototype.className+" history-content",_fetchModelDetails:function(){var t=this;return t.model.inReadyState()&&!t.model.hasDetails()?t.model.fetch({silent:!0}):t.model.has("rerunnable")?e.when():t.model.fetch({silent:!0,data:{keys:["rerunnable","creating_job"].join(",")}})},events:n.extend(n.clone(f.prototype.events),{"click .unhide-link":function(e){return this.model.unhide(),!1}}),toString:function(){return"HDAListItemEdit("+(this.model?""+this.model:"(no model)")+")"}});p.prototype.templates=function(){var e=n.extend({},f.prototype.templates.warnings,{hidden:c.default.wrapTemplate(["<% if( !dataset.visible ){ %>",'<div class="hidden-msg warningmessagesmall">',(0,h.default)("This dataset has been hidden"),'<br /><a class="unhide-link" a href="javascript:void(0);">',(0,h.default)("Unhide it"),"</a>","</div>","<% } %>"],"dataset")});return n.extend({},f.prototype.templates,{titleBar:r.default.HDAListItemView.prototype.templates.titleBar,warnings:e})}(),t.default={HDAListItemEdit:p}}).call(t,i(0),i(1))},function(e,t,i){"use strict";function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(121),a=n(s),o=i(259),l=n(o),r=i(21),d=n(r),c=i(3),u=n(c),h=a.default.HDCAListItemView,f=h.extend({_getFoldoutPanelClass:function(){return l.default.CollectionViewEdit},_renderPrimaryActions:function(){return this.log(this+"._renderPrimaryActions"),h.prototype._renderPrimaryActions.call(this).concat([this._renderDeleteButton()])},_renderDeleteButton:function(){var e=this,t=this.model.get("deleted");return(0,d.default)({title:t?(0,u.default)("Dataset collection is already deleted"):(0,u.default)("Delete"),classes:"delete-btn",faIcon:"fa-times",disabled:t,onclick:function(){e.$el.find(".icon-btn.delete-btn").trigger("mouseout"),e.model.delete()}})},toString:function(){return"HDCAListItemEdit("+(this.model?""+this.model:"(no model)")+")"}});t.default={HDCAListItemEdit:f}},function(e,t,i){"use strict";function n(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var s=i(122),a=n(s),o=i(60),l=(n(o),i(260)),r=n(l),d=i(5),c=(n(d),i(39)),u=n(c),h=i(21),f=(n(h),i(3)),p=n(f);i(20);var m=a.default.CollectionView,g=m.extend({DatasetDCEViewClass:r.default.DatasetDCEListItemEdit,NestedDCDCEViewClass:r.default.NestedDCDCEListItemEdit,getNestedDCDCEViewClass:function(){return r.default.NestedDCDCEListItemEdit.extend({foldoutPanelClass:g})},initialize:function(e){m.prototype.initialize.call(this,e)},_setUpBehaviors:function(e){if(e=e||this.$el,m.prototype._setUpBehaviors.call(this,e),this.model&&Galaxy.user&&!Galaxy.user.isAnonymous()){this.tagsEditorShown=!0;var t=this;e.find("> .controls .name").attr("title",(0,p.default)("Click to rename collection")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(e){var i=t.model.get("name");e&&e!==i?(t.$el.find("> .controls .name").text(e),t.model.save({name:e}).fail(function(){t.$el.find("> .controls .name").text(t.model.previous("name"))})):t.$el.find("> .controls 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See the <a href="https://galaxyproject.org/learn/managing-datasets/" target="_blank">documentation</a> for tips on how to find all of the data in your account.</p>'}});t.default={View:p,Model:f}}).call(t,i(2),i(0),i(1))},function(e,t,i){"use strict";(function(e,n){function s(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(t,"__esModule",{value:!0});var a=i(3),o=s(a),l=i(4),r=(s(l),i(6)),d=s(r),c=i(11),u=s(c),h=i(88),f=s(h),p=e.Collection.extend({comparator:function(e,t){return e=e.get("name"),t=t.get("name"),e>t?1:e<t?-1:0}}),m=e.View.extend({initialize:function(t){var i=this,s=Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.model.id;this.model=new e.Model,this.model.url=Galaxy.root+"api/histories/"+s+"/custom_builds_metadata",this.collection=new p,this.collection.url=Galaxy.root+"api/users/"+Galaxy.user.id+"/custom_builds",this.message=new d.default.Message({}),this.installed_builds=new d.default.Select.View({optional:!0,onchange:function(){i.installed_builds.value(null)},empty_text:"List of available builds:",error_text:"No system installed builds available."}),this.table=new f.default.View({cls:"grid",selectable:!1}),this.table.addHeader("Name"),this.table.addHeader("Key"),this.table.addHeader("Number of chroms/contigs"),this.table.addHeader(""),this.table.appendHeader(),this.setElement(n("<div/>").append(n("<h4/>").text("Current Custom Builds")).append(this.table.$el).append(this.$installed=n("<div/>").append(n("<h4/>").text("System Installed Builds").addClass("ui-margin-top")).append(this.installed_builds.$el)).append(n("<h4/>").text("Add a Custom Build").addClass("ui-margin-top")).append(n("<span/>").addClass("ui-column").append(n("<div/>").addClass("ui-column-left").append(this.message.$el).append(this.$form=n("<div/>").addClass("ui-margin-top"))).append(this.$help=n("<div/>").addClass("ui-column-right")))),this.listenTo(this.collection,"add remove reset",function(){i._renderTable()}),this.listenTo(this.model,"change",function(){i._renderForm()}),this.collection.fetch(),this.model.fetch()},render:function(){this._renderTable(),this._renderForm()},_renderTable:function(){var e=this;this.table.delAll(),this.collection.sort(),this.collection.each(function(t){e.table.add(t.get("name")),e.table.add(t.id),e.table.add(void 0!==t.get("count")?t.get("count"):"Processing..."),e.table.add(new d.default.ButtonIcon({icon:"fa-trash-o",cls:"ui-button-icon-plain",tooltip:(0,o.default)("Delete custom build."),onclick:function(){t.destroy()}}).$el),e.table.append(t.id)})},_renderForm:function(){var e=this,t=new u.default({inputs:[{type:"text",name:"name",label:"Name",help:"Specify a build name e.g. Hamster."},{type:"text",name:"id",label:"Key",help:"Specify a build key e.g. hamster_v1."},{name:"len",type:"conditional",test_param:{name:"type",label:"Definition",help:(0,o.default)("Provide the data source."),type:"select",value:"fasta",data:[{value:"fasta",label:"FASTA-file from history"},{value:"file",label:"Len-file from disk"},{value:"text",label:"Len-file by copy/paste"}]},cases:[{value:"fasta",inputs:[{type:"select",name:"value",label:"FASTA-file",data:this.model.get("fasta_hdas")}]},{value:"file",inputs:[{type:"upload",name:"value",label:"Len-file",data:this.model.get("len_hdas")}]},{value:"text",inputs:[{type:"text",area:!0,name:"value",label:"Edit/Paste"}]}]}],buttons:{save:new d.default.Button({icon:"fa-save",tooltip:(0,o.default)("Create new Build"),title:(0,o.default)("Save"),cls:"btn btn-primary ui-clear-float",onclick:function(){var i=t.data.create();i.id&&i.name?e.collection.create(i,{wait:!0,success:function(t){t.get("message")?e.message.update({message:t.get("message"),status:"warning"}):e.message.update({message:"Successfully added a new custom build.",status:"success"})},error:function(t,i){var n=i&&i.responseJSON&&i.responseJSON.err_msg;e.message.update({message:n||"Failed to create custom build.",status:"danger"})}}):e.message.update({message:"All inputs are required.",status:"danger"})}})},onchange:function(){var i=t.data.match("len|type");if(i){var n=t.field_list[i];e._renderHelp(n.value())}}});this.$form.empty().append(t.$el);var i=this.model.get("installed_builds");i&&i.length?(this.$installed.show(),this.installed_builds.update(this.model.get("installed_builds"))):this.$installed.hide(),this._renderHelp("fasta")},_renderHelp:function(e){this.$help.empty().addClass("alert alert-info").html("fasta"==e?this._templateFasta():this._templateLen())},_templateLen:function(){return"<h4>Length Format</h4><p>The length format is two-column, separated by whitespace, of the form:<pre>chrom/contig   length of chrom/contig</pre></p><p>For example, the first few entries of <em>mm9.len</em> are as follows:<pre>chr1    197195432\nchr2    181748087\nchr3    159599783\nchr4    155630120\nchr5    152537259</pre></p><p>Trackster uses this information to populate the select box for chrom/contig, andto set the maximum basepair of the track browser. 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diff --git a/static/scripts/bundled/libs.bundled.js b/static/scripts/bundled/libs.bundled.js
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r=this._removeModels(t,e);return!e.silent&&r.length&&(e.changes={added:[],merged:[],removed:r},this.trigger("update",this,e)),n?r[0]:r},set:function(t,e){if(null!=t){e=i.extend({},w,e),e.parse&&!this._isModel(t)&&(t=this.parse(t,e)||[]);var n=!i.isArray(t);t=n?[t]:t.slice();var r=e.at;null!=r&&(r=+r),r>this.length&&(r=this.length),r<0&&(r+=this.length+1);var a,o,s=[],l=[],u=[],c=[],h={},d=e.add,f=e.merge,p=e.remove,m=!1,v=this.comparator&&null==r&&!1!==e.sort,g=i.isString(this.comparator)?this.comparator:null;for(o=0;o<t.length;o++){a=t[o];var _=this.get(a);if(_){if(f&&a!==_){var y=this._isModel(a)?a.attributes:a;e.parse&&(y=_.parse(y,e)),_.set(y,e),u.push(_),v&&!m&&(m=_.hasChanged(g))}h[_.cid]||(h[_.cid]=!0,s.push(_)),t[o]=_}else d&&(a=t[o]=this._prepareModel(a,e))&&(l.push(a),this._addReference(a,e),h[a.cid]=!0,s.push(a))}if(p){for(o=0;o<this.length;o++)a=this.models[o],h[a.cid]||c.push(a);c.length&&this._removeModels(c,e)}var b=!1,x=!v&&d&&p;if(s.length&&x?(b=this.length!==s.length||i.some(this.models,function(t,e){return t!==s[e]}),this.models.length=0,k(this.models,s,0),this.length=this.models.length):l.length&&(v&&(m=!0),k(this.models,l,null==r?this.length:r),this.length=this.models.length),m&&this.sort({silent:!0}),!e.silent){for(o=0;o<l.length;o++)null!=r&&(e.index=r+o),a=l[o],a.trigger("add",a,this,e);(m||b)&&this.trigger("sort",this,e),(l.length||c.length||u.length)&&(e.changes={added:l,removed:c,merged:u},this.trigger("update",this,e))}return n?t[0]:t}},reset:function(t,e){e=e?i.clone(e):{};for(var n=0;n<this.models.length;n++)this._removeReference(this.models[n],e);return e.previousModels=this.models,this._reset(),t=this.add(t,i.extend({silent:!0},e)),e.silent||this.trigger("reset",this,e),t},push:function(t,e){return this.add(t,i.extend({at:this.length},e))},pop:function(t){var e=this.at(this.length-1);return this.remove(e,t)},unshift:function(t,e){return this.add(t,i.extend({at:0},e))},shift:function(t){var e=this.at(0);return this.remove(e,t)},slice:function(){return a.apply(this.models,arguments)},get:function(t){if(null!=t)return this._byId[t]||this._byId[this.modelId(t.attributes||t)]||t.cid&&this._byId[t.cid]},has:function(t){return null!=this.get(t)},at:function(t){return t<0&&(t+=this.length),this.models[t]},where:function(t,e){return this[e?"find":"filter"](t)},findWhere:function(t){return this.where(t,!0)},sort:function(t){var e=this.comparator;if(!e)throw new Error("Cannot sort a set without a comparator");t||(t={});var n=e.length;return i.isFunction(e)&&(e=i.bind(e,this)),1===n||i.isString(e)?this.models=this.sortBy(e):this.models.sort(e),t.silent||this.trigger("sort",this,t),this},pluck:function(t){return this.map(t+"")},fetch:function(t){t=i.extend({parse:!0},t);var e=t.success,n=this;return t.success=function(i){var r=t.reset?"reset":"set";n[r](i,t),e&&e.call(t.context,n,i,t),n.trigger("sync",n,i,t)},H(this,t),this.sync("read",this,t)},create:function(t,e){e=e?i.clone(e):{};var n=e.wait;if(!(t=this._prepareModel(t,e)))return!1;n||this.add(t,e);var r=this,a=e.success;return e.success=function(t,e,i){n&&r.add(t,i),a&&a.call(i.context,t,e,i)},t.save(null,e),t},parse:function(t,e){return t},clone:function(){return new this.constructor(this.models,{model:this.model,comparator:this.comparator})},modelId:function(t){return t[this.model.prototype.idAttribute||"id"]},_reset:function(){this.length=0,this.models=[],this._byId={}},_prepareModel:function(t,e){if(this._isModel(t))return t.collection||(t.collection=this),t;e=e?i.clone(e):{},e.collection=this;var n=new this.model(t,e);return n.validationError?(this.trigger("invalid",this,n.validationError,e),!1):n},_removeModels:function(t,e){for(var i=[],n=0;n<t.length;n++){var r=this.get(t[n]);if(r){var a=this.indexOf(r);this.models.splice(a,1),this.length--,delete this._byId[r.cid];var o=this.modelId(r.attributes);null!=o&&delete this._byId[o],e.silent||(e.index=a,r.trigger("remove",r,this,e)),i.push(r),this._removeReference(r,e)}}return i},_isModel:function(t){return t instanceof y},_addReference:function(t,e){this._byId[t.cid]=t;var i=this.modelId(t.attributes);null!=i&&(this._byId[i]=t),t.on("all",this._onModelEvent,this)},_removeReference:function(t,e){delete this._byId[t.cid];var i=this.modelId(t.attributes);null!=i&&delete this._byId[i],this===t.collection&&delete t.collection,t.off("all",this._onModelEvent,this)},_onModelEvent:function(t,e,i,n){if(e){if(("add"===t||"remove"===t)&&i!==this)return;if("destroy"===t&&this.remove(e,n),"change"===t){var r=this.modelId(e.previousAttributes()),a=this.modelId(e.attributes);r!==a&&(null!=r&&delete this._byId[r],null!=a&&(this._byId[a]=e))}}this.trigger.apply(this,arguments)}}),s(b,{forEach:3,each:3,map:3,collect:3,reduce:0,foldl:0,inject:0,reduceRight:0,foldr:0,find:3,detect:3,filter:3,select:3,reject:3,every:3,all:3,some:3,any:3,include:3,includes:3,contains:3,invoke:0,max:3,min:3,toArray:1,size:1,first:3,head:3,take:3,initial:3,rest:3,tail:3,drop:3,last:3,without:0,difference:0,indexOf:3,shuffle:1,lastIndexOf:3,isEmpty:1,chain:1,sample:3,partition:3,groupBy:3,countBy:3,sortBy:3,indexBy:3,findIndex:3,findLastIndex:3},"models");var C=e.View=function(t){this.cid=i.uniqueId("view"),i.extend(this,i.pick(t,T)),this._ensureElement(),this.initialize.apply(this,arguments)},S=/^(\S+)\s*(.*)$/,T=["model","collection","el","id","attributes","className","tagName","events"];i.extend(C.prototype,c,{tagName:"div",$:function(t){return this.$el.find(t)},initialize:function(){},render:function(){return this},remove:function(){return this._removeElement(),this.stopListening(),this},_removeElement:function(){this.$el.remove()},setElement:function(t){return this.undelegateEvents(),this._setElement(t),this.delegateEvents(),this},_setElement:function(t){this.$el=t instanceof e.$?t:e.$(t),this.el=this.$el[0]},delegateEvents:function(t){if(t||(t=i.result(this,"events")),!t)return this;this.undelegateEvents();for(var e in t){var n=t[e];if(i.isFunction(n)||(n=this[n]),n){var r=e.match(S);this.delegate(r[1],r[2],i.bind(n,this))}}return this},delegate:function(t,e,i){return this.$el.on(t+".delegateEvents"+this.cid,e,i),this},undelegateEvents:function(){return this.$el&&this.$el.off(".delegateEvents"+this.cid),this},undelegate:function(t,e,i){return this.$el.off(t+".delegateEvents"+this.cid,e,i),this},_createElement:function(t){return document.createElement(t)},_ensureElement:function(){if(this.el)this.setElement(i.result(this,"el"));else{var t=i.extend({},i.result(this,"attributes"));this.id&&(t.id=i.result(this,"id")),this.className&&(t.class=i.result(this,"className")),this.setElement(this._createElement(i.result(this,"tagName"))),this._setAttributes(t)}},_setAttributes:function(t){this.$el.attr(t)}}),e.sync=function(t,n,r){var a=A[t];i.defaults(r||(r={}),{emulateHTTP:e.emulateHTTP,emulateJSON:e.emulateJSON});var o={type:a,dataType:"json"};if(r.url||(o.url=i.result(n,"url")||L()),null!=r.data||!n||"create"!==t&&"update"!==t&&"patch"!==t||(o.contentType="application/json",o.data=JSON.stringify(r.attrs||n.toJSON(r))),r.emulateJSON&&(o.contentType="application/x-www-form-urlencoded",o.data=o.data?{model:o.data}:{}),r.emulateHTTP&&("PUT"===a||"DELETE"===a||"PATCH"===a)){o.type="POST",r.emulateJSON&&(o.data._method=a);var s=r.beforeSend;r.beforeSend=function(t){if(t.setRequestHeader("X-HTTP-Method-Override",a),s)return s.apply(this,arguments)}}"GET"===o.type||r.emulateJSON||(o.processData=!1);var l=r.error;r.error=function(t,e,i){r.textStatus=e,r.errorThrown=i,l&&l.call(r.context,t,e,i)};var u=r.xhr=e.ajax(i.extend(o,r));return n.trigger("request",n,u,r),u};var A={create:"POST",update:"PUT",patch:"PATCH",delete:"DELETE",read:"GET"};e.ajax=function(){return e.$.ajax.apply(e.$,arguments)};var M=e.Router=function(t){t||(t={}),t.routes&&(this.routes=t.routes),this._bindRoutes(),this.initialize.apply(this,arguments)},E=/\((.*?)\)/g,O=/(\(\?)?:\w+/g,$=/\*\w+/g,D=/[\-{}\[\]+?.,\\\^$|#\s]/g;i.extend(M.prototype,c,{initialize:function(){},route:function(t,n,r){i.isRegExp(t)||(t=this._routeToRegExp(t)),i.isFunction(n)&&(r=n,n=""),r||(r=this[n]);var a=this;return e.history.route(t,function(i){var o=a._extractParameters(t,i);!1!==a.execute(r,o,n)&&(a.trigger.apply(a,["route:"+n].concat(o)),a.trigger("route",n,o),e.history.trigger("route",a,n,o))}),this},execute:function(t,e,i){t&&t.apply(this,e)},navigate:function(t,i){return e.history.navigate(t,i),this},_bindRoutes:function(){if(this.routes){this.routes=i.result(this,"routes");for(var t,e=i.keys(this.routes);null!=(t=e.pop());)this.route(t,this.routes[t])}},_routeToRegExp:function(t){return t=t.replace(D,"\\$&").replace(E,"(?:$1)?").replace(O,function(t,e){return e?t:"([^/?]+)"}).replace($,"([^?]*?)"),new RegExp("^"+t+"(?:\\?([\\s\\S]*))?$")},_extractParameters:function(t,e){var n=t.exec(e).slice(1);return i.map(n,function(t,e){return e===n.length-1?t||null:t?decodeURIComponent(t):null})}});var j=e.History=function(){this.handlers=[],this.checkUrl=i.bind(this.checkUrl,this),"undefined"!=typeof window&&(this.location=window.location,this.history=window.history)},R=/^[#\/]|\s+$/g,P=/^\/+|\/+$/g,N=/#.*$/;j.started=!1,i.extend(j.prototype,c,{interval:50,atRoot:function(){return this.location.pathname.replace(/[^\/]$/,"$&/")===this.root&&!this.getSearch()},matchRoot:function(){return this.decodeFragment(this.location.pathname).slice(0,this.root.length-1)+"/"===this.root},decodeFragment:function(t){return decodeURI(t.replace(/%25/g,"%2525"))},getSearch:function(){var t=this.location.href.replace(/#.*/,"").match(/\?.+/);return t?t[0]:""},getHash:function(t){var e=(t||this).location.href.match(/#(.*)$/);return e?e[1]:""},getPath:function(){var t=this.decodeFragment(this.location.pathname+this.getSearch()).slice(this.root.length-1);return"/"===t.charAt(0)?t.slice(1):t},getFragment:function(t){return null==t&&(t=this._usePushState||!this._wantsHashChange?this.getPath():this.getHash()),t.replace(R,"")},start:function(t){if(j.started)throw new Error("Backbone.history has already been started");if(j.started=!0,this.options=i.extend({root:"/"},this.options,t),this.root=this.options.root,this._wantsHashChange=!1!==this.options.hashChange,this._hasHashChange="onhashchange"in window&&(void 0===document.documentMode||document.documentMode>7),this._useHashChange=this._wantsHashChange&&this._hasHashChange,this._wantsPushState=!!this.options.pushState,this._hasPushState=!(!this.history||!this.history.pushState),this._usePushState=this._wantsPushState&&this._hasPushState,this.fragment=this.getFragment(),this.root=("/"+this.root+"/").replace(P,"/"),this._wantsHashChange&&this._wantsPushState){if(!this._hasPushState&&!this.atRoot()){var e=this.root.slice(0,-1)||"/";return this.location.replace(e+"#"+this.getPath()),!0}this._hasPushState&&this.atRoot()&&this.navigate(this.getHash(),{replace:!0})}if(!this._hasHashChange&&this._wantsHashChange&&!this._usePushState){this.iframe=document.createElement("iframe"),this.iframe.src="javascript:0",this.iframe.style.display="none",this.iframe.tabIndex=-1;var n=document.body,r=n.insertBefore(this.iframe,n.firstChild).contentWindow;r.document.open(),r.document.close(),r.location.hash="#"+this.fragment}var a=window.addEventListener||function(t,e){return attachEvent("on"+t,e)};if(this._usePushState?a("popstate",this.checkUrl,!1):this._useHashChange&&!this.iframe?a("hashchange",this.checkUrl,!1):this._wantsHashChange&&(this._checkUrlInterval=setInterval(this.checkUrl,this.interval)),!this.options.silent)return this.loadUrl()},stop:function(){var t=window.removeEventListener||function(t,e){return detachEvent("on"+t,e)};this._usePushState?t("popstate",this.checkUrl,!1):this._useHashChange&&!this.iframe&&t("hashchange",this.checkUrl,!1),this.iframe&&(document.body.removeChild(this.iframe),this.iframe=null),this._checkUrlInterval&&clearInterval(this._checkUrlInterval),j.started=!1},route:function(t,e){this.handlers.unshift({route:t,callback:e})},checkUrl:function(t){var e=this.getFragment();if(e===this.fragment&&this.iframe&&(e=this.getHash(this.iframe.contentWindow)),e===this.fragment)return!1;this.iframe&&this.navigate(e),this.loadUrl()},loadUrl:function(t){return!!this.matchRoot()&&(t=this.fragment=this.getFragment(t),i.some(this.handlers,function(e){if(e.route.test(t))return e.callback(t),!0}))},navigate:function(t,e){if(!j.started)return!1;e&&!0!==e||(e={trigger:!!e}),t=this.getFragment(t||"");var i=this.root;""!==t&&"?"!==t.charAt(0)||(i=i.slice(0,-1)||"/");var n=i+t;if(t=this.decodeFragment(t.replace(N,"")),this.fragment!==t){if(this.fragment=t,this._usePushState)this.history[e.replace?"replaceState":"pushState"]({},document.title,n);else{if(!this._wantsHashChange)return this.location.assign(n);if(this._updateHash(this.location,t,e.replace),this.iframe&&t!==this.getHash(this.iframe.contentWindow)){var r=this.iframe.contentWindow;e.replace||(r.document.open(),r.document.close()),this._updateHash(r.location,t,e.replace)}}return e.trigger?this.loadUrl(t):void 0}},_updateHash:function(t,e,i){if(i){var n=t.href.replace(/(javascript:|#).*$/,"");t.replace(n+"#"+e)}else t.hash="#"+e}}),e.history=new j;var I=function(t,e){var n,r=this;return n=t&&i.has(t,"constructor")?t.constructor:function(){return r.apply(this,arguments)},i.extend(n,r,e),n.prototype=i.create(r.prototype,t),n.prototype.constructor=n,n.__super__=r.prototype,n};y.extend=b.extend=M.extend=C.extend=j.extend=I;var L=function(){throw new Error('A "url" property or function must be specified')},H=function(t,e){var i=e.error;e.error=function(n){i&&i.call(e.context,t,n,e),t.trigger("error",t,n,e)}};return e})}).call(e,i(76))},function(t,e,i){var n,r;n=[i(139)],void 0!==(r=function(t){if(t.hasOwnProperty("__root")){var e="undefined"==typeof navigator?"__root":(navigator.language||navigator.userLanguage||"__root").toLowerCase();t=t["__"+e]||t["__"+e.split("-")[0]]||t.__root}var i=function(e){return t[e]||e};return 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r=this._removeModels(t,e);return!e.silent&&r.length&&(e.changes={added:[],merged:[],removed:r},this.trigger("update",this,e)),n?r[0]:r},set:function(t,e){if(null!=t){e=i.extend({},w,e),e.parse&&!this._isModel(t)&&(t=this.parse(t,e)||[]);var n=!i.isArray(t);t=n?[t]:t.slice();var r=e.at;null!=r&&(r=+r),r>this.length&&(r=this.length),r<0&&(r+=this.length+1);var a,o,s=[],l=[],u=[],c=[],h={},d=e.add,f=e.merge,p=e.remove,m=!1,g=this.comparator&&null==r&&!1!==e.sort,v=i.isString(this.comparator)?this.comparator:null;for(o=0;o<t.length;o++){a=t[o];var _=this.get(a);if(_){if(f&&a!==_){var y=this._isModel(a)?a.attributes:a;e.parse&&(y=_.parse(y,e)),_.set(y,e),u.push(_),g&&!m&&(m=_.hasChanged(v))}h[_.cid]||(h[_.cid]=!0,s.push(_)),t[o]=_}else d&&(a=t[o]=this._prepareModel(a,e))&&(l.push(a),this._addReference(a,e),h[a.cid]=!0,s.push(a))}if(p){for(o=0;o<this.length;o++)a=this.models[o],h[a.cid]||c.push(a);c.length&&this._removeModels(c,e)}var b=!1,x=!g&&d&&p;if(s.length&&x?(b=this.length!==s.length||i.some(this.models,function(t,e){return t!==s[e]}),this.models.length=0,C(this.models,s,0),this.length=this.models.length):l.length&&(g&&(m=!0),C(this.models,l,null==r?this.length:r),this.length=this.models.length),m&&this.sort({silent:!0}),!e.silent){for(o=0;o<l.length;o++)null!=r&&(e.index=r+o),a=l[o],a.trigger("add",a,this,e);(m||b)&&this.trigger("sort",this,e),(l.length||c.length||u.length)&&(e.changes={added:l,removed:c,merged:u},this.trigger("update",this,e))}return n?t[0]:t}},reset:function(t,e){e=e?i.clone(e):{};for(var n=0;n<this.models.length;n++)this._removeReference(this.models[n],e);return e.previousModels=this.models,this._reset(),t=this.add(t,i.extend({silent:!0},e)),e.silent||this.trigger("reset",this,e),t},push:function(t,e){return this.add(t,i.extend({at:this.length},e))},pop:function(t){var e=this.at(this.length-1);return this.remove(e,t)},unshift:function(t,e){return this.add(t,i.extend({at:0},e))},shift:function(t){var e=this.at(0);return this.remove(e,t)},slice:function(){return a.apply(this.models,arguments)},get:function(t){if(null!=t)return this._byId[t]||this._byId[this.modelId(t.attributes||t)]||t.cid&&this._byId[t.cid]},has:function(t){return null!=this.get(t)},at:function(t){return t<0&&(t+=this.length),this.models[t]},where:function(t,e){return this[e?"find":"filter"](t)},findWhere:function(t){return this.where(t,!0)},sort:function(t){var e=this.comparator;if(!e)throw new Error("Cannot sort a set without a comparator");t||(t={});var n=e.length;return i.isFunction(e)&&(e=i.bind(e,this)),1===n||i.isString(e)?this.models=this.sortBy(e):this.models.sort(e),t.silent||this.trigger("sort",this,t),this},pluck:function(t){return this.map(t+"")},fetch:function(t){t=i.extend({parse:!0},t);var e=t.success,n=this;return t.success=function(i){var r=t.reset?"reset":"set";n[r](i,t),e&&e.call(t.context,n,i,t),n.trigger("sync",n,i,t)},z(this,t),this.sync("read",this,t)},create:function(t,e){e=e?i.clone(e):{};var n=e.wait;if(!(t=this._prepareModel(t,e)))return!1;n||this.add(t,e);var r=this,a=e.success;return e.success=function(t,e,i){n&&r.add(t,i),a&&a.call(i.context,t,e,i)},t.save(null,e),t},parse:function(t,e){return t},clone:function(){return new this.constructor(this.models,{model:this.model,comparator:this.comparator})},modelId:function(t){return t[this.model.prototype.idAttribute||"id"]},_reset:function(){this.length=0,this.models=[],this._byId={}},_prepareModel:function(t,e){if(this._isModel(t))return t.collection||(t.collection=this),t;e=e?i.clone(e):{},e.collection=this;var n=new this.model(t,e);return n.validationError?(this.trigger("invalid",this,n.validationError,e),!1):n},_removeModels:function(t,e){for(var i=[],n=0;n<t.length;n++){var r=this.get(t[n]);if(r){var a=this.indexOf(r);this.models.splice(a,1),this.length--,delete this._byId[r.cid];var o=this.modelId(r.attributes);null!=o&&delete this._byId[o],e.silent||(e.index=a,r.trigger("remove",r,this,e)),i.push(r),this._removeReference(r,e)}}return i},_isModel:function(t){return t instanceof y},_addReference:function(t,e){this._byId[t.cid]=t;var i=this.modelId(t.attributes);null!=i&&(this._byId[i]=t),t.on("all",this._onModelEvent,this)},_removeReference:function(t,e){delete this._byId[t.cid];var i=this.modelId(t.attributes);null!=i&&delete this._byId[i],this===t.collection&&delete t.collection,t.off("all",this._onModelEvent,this)},_onModelEvent:function(t,e,i,n){if(e){if(("add"===t||"remove"===t)&&i!==this)return;if("destroy"===t&&this.remove(e,n),"change"===t){var r=this.modelId(e.previousAttributes()),a=this.modelId(e.attributes);r!==a&&(null!=r&&delete this._byId[r],null!=a&&(this._byId[a]=e))}}this.trigger.apply(this,arguments)}}),s(b,{forEach:3,each:3,map:3,collect:3,reduce:0,foldl:0,inject:0,reduceRight:0,foldr:0,find:3,detect:3,filter:3,select:3,reject:3,every:3,all:3,some:3,any:3,include:3,includes:3,contains:3,invoke:0,max:3,min:3,toArray:1,size:1,first:3,head:3,take:3,initial:3,rest:3,tail:3,drop:3,last:3,without:0,difference:0,indexOf:3,shuffle:1,lastIndexOf:3,isEmpty:1,chain:1,sample:3,partition:3,groupBy:3,countBy:3,sortBy:3,indexBy:3,findIndex:3,findLastIndex:3},"models");var k=e.View=function(t){this.cid=i.uniqueId("view"),i.extend(this,i.pick(t,T)),this._ensureElement(),this.initialize.apply(this,arguments)},S=/^(\S+)\s*(.*)$/,T=["model","collection","el","id","attributes","className","tagName","events"];i.extend(k.prototype,c,{tagName:"div",$:function(t){return this.$el.find(t)},initialize:function(){},render:function(){return this},remove:function(){return this._removeElement(),this.stopListening(),this},_removeElement:function(){this.$el.remove()},setElement:function(t){return this.undelegateEvents(),this._setElement(t),this.delegateEvents(),this},_setElement:function(t){this.$el=t instanceof e.$?t:e.$(t),this.el=this.$el[0]},delegateEvents:function(t){if(t||(t=i.result(this,"events")),!t)return this;this.undelegateEvents();for(var e in t){var n=t[e];if(i.isFunction(n)||(n=this[n]),n){var r=e.match(S);this.delegate(r[1],r[2],i.bind(n,this))}}return this},delegate:function(t,e,i){return this.$el.on(t+".delegateEvents"+this.cid,e,i),this},undelegateEvents:function(){return this.$el&&this.$el.off(".delegateEvents"+this.cid),this},undelegate:function(t,e,i){return this.$el.off(t+".delegateEvents"+this.cid,e,i),this},_createElement:function(t){return document.createElement(t)},_ensureElement:function(){if(this.el)this.setElement(i.result(this,"el"));else{var t=i.extend({},i.result(this,"attributes"));this.id&&(t.id=i.result(this,"id")),this.className&&(t.class=i.result(this,"className")),this.setElement(this._createElement(i.result(this,"tagName"))),this._setAttributes(t)}},_setAttributes:function(t){this.$el.attr(t)}}),e.sync=function(t,n,r){var a=A[t];i.defaults(r||(r={}),{emulateHTTP:e.emulateHTTP,emulateJSON:e.emulateJSON});var o={type:a,dataType:"json"};if(r.url||(o.url=i.result(n,"url")||L()),null!=r.data||!n||"create"!==t&&"update"!==t&&"patch"!==t||(o.contentType="application/json",o.data=JSON.stringify(r.attrs||n.toJSON(r))),r.emulateJSON&&(o.contentType="application/x-www-form-urlencoded",o.data=o.data?{model:o.data}:{}),r.emulateHTTP&&("PUT"===a||"DELETE"===a||"PATCH"===a)){o.type="POST",r.emulateJSON&&(o.data._method=a);var s=r.beforeSend;r.beforeSend=function(t){if(t.setRequestHeader("X-HTTP-Method-Override",a),s)return s.apply(this,arguments)}}"GET"===o.type||r.emulateJSON||(o.processData=!1);var l=r.error;r.error=function(t,e,i){r.textStatus=e,r.errorThrown=i,l&&l.call(r.context,t,e,i)};var u=r.xhr=e.ajax(i.extend(o,r));return n.trigger("request",n,u,r),u};var A={create:"POST",update:"PUT",patch:"PATCH",delete:"DELETE",read:"GET"};e.ajax=function(){return e.$.ajax.apply(e.$,arguments)};var M=e.Router=function(t){t||(t={}),t.routes&&(this.routes=t.routes),this._bindRoutes(),this.initialize.apply(this,arguments)},E=/\((.*?)\)/g,O=/(\(\?)?:\w+/g,$=/\*\w+/g,D=/[\-{}\[\]+?.,\\\^$|#\s]/g;i.extend(M.prototype,c,{initialize:function(){},route:function(t,n,r){i.isRegExp(t)||(t=this._routeToRegExp(t)),i.isFunction(n)&&(r=n,n=""),r||(r=this[n]);var a=this;return e.history.route(t,function(i){var o=a._extractParameters(t,i);!1!==a.execute(r,o,n)&&(a.trigger.apply(a,["route:"+n].concat(o)),a.trigger("route",n,o),e.history.trigger("route",a,n,o))}),this},execute:function(t,e,i){t&&t.apply(this,e)},navigate:function(t,i){return e.history.navigate(t,i),this},_bindRoutes:function(){if(this.routes){this.routes=i.result(this,"routes");for(var t,e=i.keys(this.routes);null!=(t=e.pop());)this.route(t,this.routes[t])}},_routeToRegExp:function(t){return t=t.replace(D,"\\$&").replace(E,"(?:$1)?").replace(O,function(t,e){return e?t:"([^/?]+)"}).replace($,"([^?]*?)"),new RegExp("^"+t+"(?:\\?([\\s\\S]*))?$")},_extractParameters:function(t,e){var n=t.exec(e).slice(1);return i.map(n,function(t,e){return e===n.length-1?t||null:t?decodeURIComponent(t):null})}});var j=e.History=function(){this.handlers=[],this.checkUrl=i.bind(this.checkUrl,this),"undefined"!=typeof window&&(this.location=window.location,this.history=window.history)},P=/^[#\/]|\s+$/g,R=/^\/+|\/+$/g,I=/#.*$/;j.started=!1,i.extend(j.prototype,c,{interval:50,atRoot:function(){return this.location.pathname.replace(/[^\/]$/,"$&/")===this.root&&!this.getSearch()},matchRoot:function(){return this.decodeFragment(this.location.pathname).slice(0,this.root.length-1)+"/"===this.root},decodeFragment:function(t){return decodeURI(t.replace(/%25/g,"%2525"))},getSearch:function(){var t=this.location.href.replace(/#.*/,"").match(/\?.+/);return t?t[0]:""},getHash:function(t){var e=(t||this).location.href.match(/#(.*)$/);return e?e[1]:""},getPath:function(){var t=this.decodeFragment(this.location.pathname+this.getSearch()).slice(this.root.length-1);return"/"===t.charAt(0)?t.slice(1):t},getFragment:function(t){return null==t&&(t=this._usePushState||!this._wantsHashChange?this.getPath():this.getHash()),t.replace(P,"")},start:function(t){if(j.started)throw new Error("Backbone.history has already been started");if(j.started=!0,this.options=i.extend({root:"/"},this.options,t),this.root=this.options.root,this._wantsHashChange=!1!==this.options.hashChange,this._hasHashChange="onhashchange"in window&&(void 0===document.documentMode||document.documentMode>7),this._useHashChange=this._wantsHashChange&&this._hasHashChange,this._wantsPushState=!!this.options.pushState,this._hasPushState=!(!this.history||!this.history.pushState),this._usePushState=this._wantsPushState&&this._hasPushState,this.fragment=this.getFragment(),this.root=("/"+this.root+"/").replace(R,"/"),this._wantsHashChange&&this._wantsPushState){if(!this._hasPushState&&!this.atRoot()){var e=this.root.slice(0,-1)||"/";return this.location.replace(e+"#"+this.getPath()),!0}this._hasPushState&&this.atRoot()&&this.navigate(this.getHash(),{replace:!0})}if(!this._hasHashChange&&this._wantsHashChange&&!this._usePushState){this.iframe=document.createElement("iframe"),this.iframe.src="javascript:0",this.iframe.style.display="none",this.iframe.tabIndex=-1;var n=document.body,r=n.insertBefore(this.iframe,n.firstChild).contentWindow;r.document.open(),r.document.close(),r.location.hash="#"+this.fragment}var a=window.addEventListener||function(t,e){return attachEvent("on"+t,e)};if(this._usePushState?a("popstate",this.checkUrl,!1):this._useHashChange&&!this.iframe?a("hashchange",this.checkUrl,!1):this._wantsHashChange&&(this._checkUrlInterval=setInterval(this.checkUrl,this.interval)),!this.options.silent)return this.loadUrl()},stop:function(){var t=window.removeEventListener||function(t,e){return detachEvent("on"+t,e)};this._usePushState?t("popstate",this.checkUrl,!1):this._useHashChange&&!this.iframe&&t("hashchange",this.checkUrl,!1),this.iframe&&(document.body.removeChild(this.iframe),this.iframe=null),this._checkUrlInterval&&clearInterval(this._checkUrlInterval),j.started=!1},route:function(t,e){this.handlers.unshift({route:t,callback:e})},checkUrl:function(t){var e=this.getFragment();if(e===this.fragment&&this.iframe&&(e=this.getHash(this.iframe.contentWindow)),e===this.fragment)return!1;this.iframe&&this.navigate(e),this.loadUrl()},loadUrl:function(t){return!!this.matchRoot()&&(t=this.fragment=this.getFragment(t),i.some(this.handlers,function(e){if(e.route.test(t))return e.callback(t),!0}))},navigate:function(t,e){if(!j.started)return!1;e&&!0!==e||(e={trigger:!!e}),t=this.getFragment(t||"");var i=this.root;""!==t&&"?"!==t.charAt(0)||(i=i.slice(0,-1)||"/");var n=i+t;if(t=this.decodeFragment(t.replace(I,"")),this.fragment!==t){if(this.fragment=t,this._usePushState)this.history[e.replace?"replaceState":"pushState"]({},document.title,n);else{if(!this._wantsHashChange)return this.location.assign(n);if(this._updateHash(this.location,t,e.replace),this.iframe&&t!==this.getHash(this.iframe.contentWindow)){var r=this.iframe.contentWindow;e.replace||(r.document.open(),r.document.close()),this._updateHash(r.location,t,e.replace)}}return e.trigger?this.loadUrl(t):void 0}},_updateHash:function(t,e,i){if(i){var n=t.href.replace(/(javascript:|#).*$/,"");t.replace(n+"#"+e)}else t.hash="#"+e}}),e.history=new j;var N=function(t,e){var n,r=this;return n=t&&i.has(t,"constructor")?t.constructor:function(){return r.apply(this,arguments)},i.extend(n,r,e),n.prototype=i.create(r.prototype,t),n.prototype.constructor=n,n.__super__=r.prototype,n};y.extend=b.extend=M.extend=k.extend=j.extend=N;var L=function(){throw new Error('A "url" property or function must be specified')},z=function(t,e){var i=e.error;e.error=function(n){i&&i.call(e.context,t,n,e),t.trigger("error",t,n,e)}};return e})}).call(e,i(76))},function(t,e,i){var n,r;n=[i(139)],void 0!==(r=function(t){if(t.hasOwnProperty("__root")){var e="undefined"==typeof navigator?"__root":(navigator.language||navigator.userLanguage||"__root").toLowerCase();t=t["__"+e]||t["__"+e.split("-")[0]]||t.__root}var i=function(e){return t[e]||e};return 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e=t.from_str.split(":"),i=e[0],n=e[1].split("-");this.set({chrom:i,start:parseInt(n[0],10),end:parseInt(n[1],10)})}this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end"),this.on("change",function(){this.attributes.str_val=this.get("chrom")+":"+this.get("start")+"-"+this.get("end")},this)},copy:function(){return new A({chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")})},length:function(){return this.get("end")-this.get("start")},toString:function(){return this.attributes.str_val},toJSON:function(){return{chrom:this.get("chrom"),start:this.get("start"),end:this.get("end")}},compute_overlap:function(t){var e=this.get("chrom"),i=t.get("chrom"),n=this.get("start"),r=t.get("start"),a=this.get("end"),o=t.get("end");return 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i=0;t.widget("ui.autocomplete",{version:"1.9.1",defaultElement:"<input>",options:{appendTo:"body",autoFocus:!1,delay:300,minLength:1,position:{my:"left top",at:"left bottom",collision:"none"},source:null,change:null,close:null,focus:null,open:null,response:null,search:null,select:null},pending:0,_create:function(){var e,i,n;this.isMultiLine=this._isMultiLine(),this.valueMethod=this.element[this.element.is("input,textarea")?"val":"text"],this.isNewMenu=!0,this.element.addClass("ui-autocomplete-input").attr("autocomplete","off"),this._on(this.element,{keydown:function(r){if(this.element.prop("readOnly"))return e=!0,n=!0,i=!0,void 0;e=!1,n=!1,i=!1;var a=t.ui.keyCode;switch(r.keyCode){case a.PAGE_UP:e=!0,this._move("previousPage",r);break;case a.PAGE_DOWN:e=!0,this._move("nextPage",r);break;case a.UP:e=!0,this._keyEvent("previous",r);break;case a.DOWN:e=!0,this._keyEvent("next",r);break;case a.ENTER:case a.NUMPAD_ENTER:this.menu.active&&(e=!0,r.preventDefault(),this.menu.select(r));break;case a.TAB:this.menu.active&&this.menu.select(r);break;case a.ESCAPE:this.menu.element.is(":visible")&&(this._value(this.term),this.close(r),r.preventDefault());break;default:i=!0,this._searchTimeout(r)}},keypress:function(n){if(e)return e=!1,void n.preventDefault();if(!i){var r=t.ui.keyCode;switch(n.keyCode){case r.PAGE_UP:this._move("previousPage",n);break;case r.PAGE_DOWN:this._move("nextPage",n);break;case r.UP:this._keyEvent("previous",n);break;case r.DOWN:this._keyEvent("next",n)}}},input:function(t){if(n)return n=!1,void t.preventDefault();this._searchTimeout(t)},focus:function(){this.selectedItem=null,this.previous=this._value()},blur:function(t){if(this.cancelBlur)return void delete 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n=i.item.data("ui-autocomplete-item")||i.item.data("item.autocomplete");!1!==this._trigger("focus",e,{item:n})?e.originalEvent&&/^key/.test(e.originalEvent.type)&&this._value(n.value):this.liveRegion.text(n.value)},menuselect:function(t,e){var i=e.item.data("ui-autocomplete-item")||e.item.data("item.autocomplete"),n=this.previous;this.element[0]!==this.document[0].activeElement&&(this.element.focus(),this.previous=n,this._delay(function(){this.previous=n,this.selectedItem=i})),!1!==this._trigger("select",t,{item:i})&&this._value(i.value),this.term=this._value(),this.close(t),this.selectedItem=i}}),this.liveRegion=t("<span>",{role:"status","aria-live":"polite"}).addClass("ui-helper-hidden-accessible").insertAfter(this.element),t.fn.bgiframe&&this.menu.element.bgiframe(),this._on(this.window,{beforeunload:function(){this.element.removeAttr("autocomplete")}})},_destroy:function(){clearTimeout(this.searching),this.element.removeClass("ui-autocomplete-input").removeAttr("autocomplete"),this.menu.element.remove(),this.liveRegion.remove()},_setOption:function(t,e){this._super(t,e),"source"===t&&this._initSource(),"appendTo"===t&&this.menu.element.appendTo(this.document.find(e||"body")[0]),"disabled"===t&&e&&this.xhr&&this.xhr.abort()},_isMultiLine:function(){return!!this.element.is("textarea")||!this.element.is("input")&&this.element.prop("isContentEditable")},_initSource:function(){var e,i,n=this;t.isArray(this.options.source)?(e=this.options.source,this.source=function(i,n){n(t.ui.autocomplete.filter(e,i.term))}):"string"==typeof this.options.source?(i=this.options.source,this.source=function(e,r){n.xhr&&n.xhr.abort(),n.xhr=t.ajax({url:i,data:e,dataType:"json",success:function(t){r(t)},error:function(){r([])}})}):this.source=this.options.source},_searchTimeout:function(t){clearTimeout(this.searching),this.searching=this._delay(function(){this.term!==this._value()&&(this.selectedItem=null,this.search(null,t))},this.options.delay)},search:function(t,e){return t=null!=t?t:this._value(),this.term=this._value(),t.length<this.options.minLength?this.close(e):!1!==this._trigger("search",e)?this._search(t):void 0},_search:function(t){this.pending++,this.element.addClass("ui-autocomplete-loading"),this.cancelSearch=!1,this.source({term:t},this._response())},_response:function(){var t=this,e=++i;return function(n){e===i&&t.__response(n),--t.pending||t.element.removeClass("ui-autocomplete-loading")}},__response:function(t){t&&(t=this._normalize(t)),this._trigger("response",null,{content:t}),!this.options.disabled&&t&&t.length&&!this.cancelSearch?(this._suggest(t),this._trigger("open")):this._close()},close:function(t){this.cancelSearch=!0,this._close(t)},_close:function(t){this.menu.element.is(":visible")&&(this.menu.element.hide(),this.menu.blur(),this.isNewMenu=!0,this._trigger("close",t))},_change:function(t){this.previous!==this._value()&&this._trigger("change",t,{item:this.selectedItem})},_normalize:function(e){return e.length&&e[0].label&&e[0].value?e:t.map(e,function(e){return"string"==typeof e?{label:e,value:e}:t.extend({label:e.label||e.value,value:e.value||e.label},e)})},_suggest:function(e){var i=this.menu.element.empty().zIndex(this.element.zIndex()+1);this._renderMenu(i,e),this.menu.refresh(),i.show(),this._resizeMenu(),i.position(t.extend({of:this.element},this.options.position)),this.options.autoFocus&&this.menu.next()},_resizeMenu:function(){var t=this.menu.element;t.outerWidth(Math.max(t.width("").outerWidth()+1,this.element.outerWidth()))},_renderMenu:function(e,i){var n=this;t.each(i,function(t,i){n._renderItemData(e,i)})},_renderItemData:function(t,e){return this._renderItem(t,e).data("ui-autocomplete-item",e)},_renderItem:function(e,i){return t("<li>").append(t("<a>").text(i.label)).appendTo(e)},_move:function(t,e){return this.menu.element.is(":visible")?this.menu.isFirstItem()&&/^previous/.test(t)||this.menu.isLastItem()&&/^next/.test(t)?(this._value(this.term),void this.menu.blur()):void this.menu[t](e):void this.search(null,e)},widget:function(){return this.menu.element},_value:function(){return this.valueMethod.apply(this.element,arguments)},_keyEvent:function(t,e){this.isMultiLine&&!this.menu.element.is(":visible")||(this._move(t,e),e.preventDefault())}}),t.extend(t.ui.autocomplete,{escapeRegex:function(t){return t.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g,"\\$&")},filter:function(e,i){var n=new RegExp(t.ui.autocomplete.escapeRegex(i),"i");return t.grep(e,function(t){return n.test(t.label||t.value||t)})}}),t.widget("ui.autocomplete",t.ui.autocomplete,{options:{messages:{noResults:"No search results.",results:function(t){return t+(t>1?" results are":" result is")+" available, use up and down arrow keys to navigate."}}},__response:function(t){var e;this._superApply(arguments),this.options.disabled||this.cancelSearch||(e=t&&t.length?this.options.messages.results(t.length):this.options.messages.noResults,this.liveRegion.text(e))}})}(t),function(t,e){var i,n,r,a,o="ui-button ui-widget ui-state-default ui-corner-all",s="ui-button-icons-only ui-button-icon-only ui-button-text-icons ui-button-text-icon-primary ui-button-text-icon-secondary ui-button-text-only",l=function(){var e=t(this).find(":ui-button");setTimeout(function(){e.button("refresh")},1)},u=function(e){var i=e.name,n=e.form,r=t([]);return i&&(r=n?t(n).find("[name='"+i+"']"):t("[name='"+i+"']",e.ownerDocument).filter(function(){return!this.form})),r};t.widget("ui.button",{version:"1.9.1",defaultElement:"<button>",options:{disabled:null,text:!0,label:null,icons:{primary:null,secondary:null}},_create:function(){this.element.closest("form").unbind("reset"+this.eventNamespace).bind("reset"+this.eventNamespace,l),"boolean"!=typeof this.options.disabled?this.options.disabled=!!this.element.prop("disabled"):this.element.prop("disabled",this.options.disabled),this._determineButtonType(),this.hasTitle=!!this.buttonElement.attr("title");var e=this,s=this.options,c="checkbox"===this.type||"radio"===this.type,h="ui-state-hover"+(c?"":" ui-state-active"),d="ui-state-focus";null===s.label&&(s.label="input"===this.type?this.buttonElement.val():this.buttonElement.html()),this.buttonElement.addClass(o).attr("role","button").bind("mouseenter"+this.eventNamespace,function(){s.disabled||(t(this).addClass("ui-state-hover"),this===i&&t(this).addClass("ui-state-active"))}).bind("mouseleave"+this.eventNamespace,function(){s.disabled||t(this).removeClass(h)}).bind("click"+this.eventNamespace,function(t){s.disabled&&(t.preventDefault(),t.stopImmediatePropagation())}),this.element.bind("focus"+this.eventNamespace,function(){e.buttonElement.addClass(d)}).bind("blur"+this.eventNamespace,function(){e.buttonElement.removeClass(d)}),c&&(this.element.bind("change"+this.eventNamespace,function(){a||e.refresh()}),this.buttonElement.bind("mousedown"+this.eventNamespace,function(t){s.disabled||(a=!1,n=t.pageX,r=t.pageY)}).bind("mouseup"+this.eventNamespace,function(t){s.disabled||n===t.pageX&&r===t.pageY||(a=!0)})),"checkbox"===this.type?this.buttonElement.bind("click"+this.eventNamespace,function(){if(s.disabled||a)return!1;t(this).toggleClass("ui-state-active"),e.buttonElement.attr("aria-pressed",e.element[0].checked)}):"radio"===this.type?this.buttonElement.bind("click"+this.eventNamespace,function(){if(s.disabled||a)return!1;t(this).addClass("ui-state-active"),e.buttonElement.attr("aria-pressed","true");var i=e.element[0];u(i).not(i).map(function(){return t(this).button("widget")[0]}).removeClass("ui-state-active").attr("aria-pressed","false")}):(this.buttonElement.bind("mousedown"+this.eventNamespace,function(){if(s.disabled)return!1;t(this).addClass("ui-state-active"),i=this,e.document.one("mouseup",function(){i=null})}).bind("mouseup"+this.eventNamespace,function(){if(s.disabled)return!1;t(this).removeClass("ui-state-active")}).bind("keydown"+this.eventNamespace,function(e){if(s.disabled)return!1;(e.keyCode===t.ui.keyCode.SPACE||e.keyCode===t.ui.keyCode.ENTER)&&t(this).addClass("ui-state-active")}).bind("keyup"+this.eventNamespace,function(){t(this).removeClass("ui-state-active")}),this.buttonElement.is("a")&&this.buttonElement.keyup(function(e){e.keyCode===t.ui.keyCode.SPACE&&t(this).click()})),this._setOption("disabled",s.disabled),this._resetButton()},_determineButtonType:function(){var t,e,i;this.element.is("[type=checkbox]")?this.type="checkbox":this.element.is("[type=radio]")?this.type="radio":this.element.is("input")?this.type="input":this.type="button","checkbox"===this.type||"radio"===this.type?(t=this.element.parents().last(),e="label[for='"+this.element.attr("id")+"']",this.buttonElement=t.find(e),this.buttonElement.length||(t=t.length?t.siblings():this.element.siblings(),this.buttonElement=t.filter(e),this.buttonElement.length||(this.buttonElement=t.find(e))),this.element.addClass("ui-helper-hidden-accessible"),i=this.element.is(":checked"),i&&this.buttonElement.addClass("ui-state-active"),this.buttonElement.prop("aria-pressed",i)):this.buttonElement=this.element},widget:function(){return this.buttonElement},_destroy:function(){this.element.removeClass("ui-helper-hidden-accessible"),this.buttonElement.removeClass(o+" ui-state-hover ui-state-active  "+s).removeAttr("role").removeAttr("aria-pressed").html(this.buttonElement.find(".ui-button-text").html()),this.hasTitle||this.buttonElement.removeAttr("title")},_setOption:function(t,e){if(this._super(t,e),"disabled"===t)return void(e?this.element.prop("disabled",!0):this.element.prop("disabled",!1));this._resetButton()},refresh:function(){var e=this.element.is(":disabled")||this.element.hasClass("ui-button-disabled");e!==this.options.disabled&&this._setOption("disabled",e),"radio"===this.type?u(this.element[0]).each(function(){t(this).is(":checked")?t(this).button("widget").addClass("ui-state-active").attr("aria-pressed","true"):t(this).button("widget").removeClass("ui-state-active").attr("aria-pressed","false")}):"checkbox"===this.type&&(this.element.is(":checked")?this.buttonElement.addClass("ui-state-active").attr("aria-pressed","true"):this.buttonElement.removeClass("ui-state-active").attr("aria-pressed","false"))},_resetButton:function(){if("input"===this.type)return void(this.options.label&&this.element.val(this.options.label));var e=this.buttonElement.removeClass(s),i=t("<span></span>",this.document[0]).addClass("ui-button-text").html(this.options.label).appendTo(e.empty()).text(),n=this.options.icons,r=n.primary&&n.secondary,a=[];n.primary||n.secondary?(this.options.text&&a.push("ui-button-text-icon"+(r?"s":n.primary?"-primary":"-secondary")),n.primary&&e.prepend("<span class='ui-button-icon-primary ui-icon "+n.primary+"'></span>"),n.secondary&&e.append("<span class='ui-button-icon-secondary ui-icon "+n.secondary+"'></span>"),this.options.text||(a.push(r?"ui-button-icons-only":"ui-button-icon-only"),this.hasTitle||e.attr("title",t.trim(i)))):a.push("ui-button-text-only"),e.addClass(a.join(" "))}}),t.widget("ui.buttonset",{version:"1.9.1",options:{items:"button, input[type=button], input[type=submit], input[type=reset], input[type=checkbox], input[type=radio], a, :data(button)"},_create:function(){this.element.addClass("ui-buttonset")},_init:function(){this.refresh()},_setOption:function(t,e){"disabled"===t&&this.buttons.button("option",t,e),this._super(t,e)},refresh:function(){var e="rtl"===this.element.css("direction");this.buttons=this.element.find(this.options.items).filter(":ui-button").button("refresh").end().not(":ui-button").button().end().map(function(){return t(this).button("widget")[0]}).removeClass("ui-corner-all ui-corner-left ui-corner-right").filter(":first").addClass(e?"ui-corner-right":"ui-corner-left").end().filter(":last").addClass(e?"ui-corner-left":"ui-corner-right").end().end()},_destroy:function(){this.element.removeClass("ui-buttonset"),this.buttons.map(function(){return t(this).button("widget")[0]}).removeClass("ui-corner-left ui-corner-right").end().button("destroy")}})}(t),function(t,e){var i=!1;t.widget("ui.menu",{version:"1.9.1",defaultElement:"<ul>",delay:300,options:{icons:{submenu:"ui-icon-carat-1-e"},menus:"ul",position:{my:"left top",at:"right top"},role:"menu",blur:null,focus:null,select:null},_create:function(){this.activeMenu=this.element,this.element.uniqueId().addClass("ui-menu ui-widget ui-widget-content ui-corner-all").toggleClass("ui-menu-icons",!!this.element.find(".ui-icon").length).attr({role:this.options.role,tabIndex:0}).bind("click"+this.eventNamespace,t.proxy(function(t){this.options.disabled&&t.preventDefault()},this)),this.options.disabled&&this.element.addClass("ui-state-disabled").attr("aria-disabled","true"),this._on({"mousedown .ui-menu-item > a":function(t){t.preventDefault()},"click .ui-state-disabled > a":function(t){t.preventDefault()},"click .ui-menu-item:has(a)":function(e){var n=t(e.target).closest(".ui-menu-item");!i&&n.not(".ui-state-disabled").length&&(i=!0,this.select(e),n.has(".ui-menu").length?this.expand(e):this.element.is(":focus")||(this.element.trigger("focus",[!0]),this.active&&1===this.active.parents(".ui-menu").length&&clearTimeout(this.timer)))},"mouseenter .ui-menu-item":function(e){var i=t(e.currentTarget);i.siblings().children(".ui-state-active").removeClass("ui-state-active"),this.focus(e,i)},mouseleave:"collapseAll","mouseleave .ui-menu":"collapseAll",focus:function(t,e){var i=this.active||this.element.children(".ui-menu-item").eq(0);e||this.focus(t,i)},blur:function(e){this._delay(function(){t.contains(this.element[0],this.document[0].activeElement)||this.collapseAll(e)})},keydown:"_keydown"}),this.refresh(),this._on(this.document,{click:function(e){t(e.target).closest(".ui-menu").length||this.collapseAll(e),i=!1}})},_destroy:function(){this.element.removeAttr("aria-activedescendant").find(".ui-menu").andSelf().removeClass("ui-menu ui-widget ui-widget-content ui-corner-all ui-menu-icons").removeAttr("role").removeAttr("tabIndex").removeAttr("aria-labelledby").removeAttr("aria-expanded").removeAttr("aria-hidden").removeAttr("aria-disabled").removeUniqueId().show(),this.element.find(".ui-menu-item").removeClass("ui-menu-item").removeAttr("role").removeAttr("aria-disabled").children("a").removeUniqueId().removeClass("ui-corner-all ui-state-hover").removeAttr("tabIndex").removeAttr("role").removeAttr("aria-haspopup").children().each(function(){var e=t(this);e.data("ui-menu-submenu-carat")&&e.remove()}),this.element.find(".ui-menu-divider").removeClass("ui-menu-divider ui-widget-content")},_keydown:function(e){function i(t){return t.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g,"\\$&")}var n,r,a,o,s,l=!0;switch(e.keyCode){case t.ui.keyCode.PAGE_UP:this.previousPage(e);break;case t.ui.keyCode.PAGE_DOWN:this.nextPage(e);break;case t.ui.keyCode.HOME:this._move("first","first",e);break;case t.ui.keyCode.END:this._move("last","last",e);break;case t.ui.keyCode.UP:this.previous(e);break;case t.ui.keyCode.DOWN:this.next(e);break;case t.ui.keyCode.LEFT:this.collapse(e);break;case t.ui.keyCode.RIGHT:this.active&&!this.active.is(".ui-state-disabled")&&this.expand(e);break;case t.ui.keyCode.ENTER:case t.ui.keyCode.SPACE:this._activate(e);break;case t.ui.keyCode.ESCAPE:this.collapse(e);break;default:l=!1,r=this.previousFilter||"",a=String.fromCharCode(e.keyCode),o=!1,clearTimeout(this.filterTimer),a===r?o=!0:a=r+a,s=new RegExp("^"+i(a),"i"),n=this.activeMenu.children(".ui-menu-item").filter(function(){return s.test(t(this).children("a").text())}),n=o&&-1!==n.index(this.active.next())?this.active.nextAll(".ui-menu-item"):n,n.length||(a=String.fromCharCode(e.keyCode),s=new RegExp("^"+i(a),"i"),n=this.activeMenu.children(".ui-menu-item").filter(function(){return s.test(t(this).children("a").text())})),n.length?(this.focus(e,n),n.length>1?(this.previousFilter=a,this.filterTimer=this._delay(function(){delete this.previousFilter},1e3)):delete this.previousFilter):delete this.previousFilter}l&&e.preventDefault()},_activate:function(t){this.active.is(".ui-state-disabled")||(this.active.children("a[aria-haspopup='true']").length?this.expand(t):this.select(t))},refresh:function(){var e,i=this.options.icons.submenu,n=this.element.find(this.options.menus+":not(.ui-menu)").addClass("ui-menu ui-widget ui-widget-content ui-corner-all").hide().attr({role:this.options.role,"aria-hidden":"true","aria-expanded":"false"});e=n.add(this.element),e.children(":not(.ui-menu-item):has(a)").addClass("ui-menu-item").attr("role","presentation").children("a").uniqueId().addClass("ui-corner-all").attr({tabIndex:-1,role:this._itemRole()}),e.children(":not(.ui-menu-item)").each(function(){var e=t(this);/[^\-—–\s]/.test(e.text())||e.addClass("ui-widget-content 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i,n;this.blur(t,t&&"focus"===t.type),this._scrollIntoView(e),this.active=e.first(),n=this.active.children("a").addClass("ui-state-focus"),this.options.role&&this.element.attr("aria-activedescendant",n.attr("id")),this.active.parent().closest(".ui-menu-item").children("a:first").addClass("ui-state-active"),t&&"keydown"===t.type?this._close():this.timer=this._delay(function(){this._close()},this.delay),i=e.children(".ui-menu"),i.length&&/^mouse/.test(t.type)&&this._startOpening(i),this.activeMenu=e.parent(),this._trigger("focus",t,{item:e})},_scrollIntoView:function(e){var 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r(o,this)}),u}},t.Widget=function(){},t.Widget._childConstructors=[],t.Widget.prototype={widgetName:"widget",widgetEventPrefix:"",defaultElement:"<div>",options:{disabled:!1,create:null},_createWidget:function(e,n){n=t(n||this.defaultElement||this)[0],this.element=t(n),this.uuid=i++,this.eventNamespace="."+this.widgetName+this.uuid,this.options=t.widget.extend({},this.options,this._getCreateOptions(),e),this.bindings=t(),this.hoverable=t(),this.focusable=t(),n!==this&&(t.data(n,this.widgetName,this),t.data(n,this.widgetFullName,this),this._on(this.element,{remove:function(t){t.target===n&&this.destroy()}}),this.document=t(n.style?n.ownerDocument:n.document||n),this.window=t(this.document[0].defaultView||this.document[0].parentWindow)),this._create(),this._trigger("create",null,this._getCreateEventData()),this._init()},_getCreateOptions:t.noop,_getCreateEventData:t.noop,_create:t.noop,_init:t.noop,destroy:function(){this._destroy(),this.element.unbind(this.eventNamespace).removeData(this.widgetName).removeData(this.widgetFullName).removeData(t.camelCase(this.widgetFullName)),this.widget().unbind(this.eventNamespace).removeAttr("aria-disabled").removeClass(this.widgetFullName+"-disabled 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setTimeout(i,e||0)},_hoverable:function(e){this.hoverable=this.hoverable.add(e),this._on(e,{mouseenter:function(e){t(e.currentTarget).addClass("ui-state-hover")},mouseleave:function(e){t(e.currentTarget).removeClass("ui-state-hover")}})},_focusable:function(e){this.focusable=this.focusable.add(e),this._on(e,{focusin:function(e){t(e.currentTarget).addClass("ui-state-focus")},focusout:function(e){t(e.currentTarget).removeClass("ui-state-focus")}})},_trigger:function(e,i,n){var r,a,o=this.options[e];if(n=n||{},i=t.Event(i),i.type=(e===this.widgetEventPrefix?e:this.widgetEventPrefix+e).toLowerCase(),i.target=this.element[0],a=i.originalEvent,a)for(r in a)r in i||(i[r]=a[r]);return this.element.trigger(i,n),!(t.isFunction(o)&&!1===o.apply(this.element[0],[i].concat(n))||i.isDefaultPrevented())}},t.each({show:"fadeIn",hide:"fadeOut"},function(e,i){t.Widget.prototype["_"+e]=function(n,r,a){"string"==typeof r&&(r={effect:r});var o,s=r?!0===r||"number"==typeof 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Math.max(Math.abs(this._mouseDownEvent.pageX-t.pageX),Math.abs(this._mouseDownEvent.pageY-t.pageY))>=this.options.distance},_mouseDelayMet:function(t){return this.mouseDelayMet},_mouseStart:function(t){},_mouseDrag:function(t){},_mouseStop:function(t){},_mouseCapture:function(t){return!0}})}(t),function(e,i){function n(t,e,i){return[parseInt(t[0],10)*(f.test(t[0])?e/100:1),parseInt(t[1],10)*(f.test(t[1])?i/100:1)]}function r(t,i){return parseInt(e.css(t,i),10)||0}e.ui=e.ui||{};var a,o=Math.max,s=Math.abs,l=Math.round,u=/left|center|right/,c=/top|center|bottom/,h=/[\+\-]\d+%?/,d=/^\w+/,f=/%$/,p=e.fn.position;e.position={scrollbarWidth:function(){if(a!==i)return a;var t,n,r=e("<div style='display:block;width:50px;height:50px;overflow:hidden;'><div style='height:100px;width:auto;'></div></div>"),o=r.children()[0];return e("body").append(r),t=o.offsetWidth,r.css("overflow","scroll"),n=o.offsetWidth,t===n&&(n=r[0].clientWidth),r.remove(),a=t-n},getScrollInfo:function(t){var 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i=m.left-T.left,n=i+a-d,r=m.top-T.top,l=r+f-p,u={target:{element:v,left:m.left,top:m.top,width:a,height:f},element:{element:h,left:T.left,top:T.top,width:d,height:p},horizontal:n<0?"left":i>0?"right":"center",vertical:l<0?"top":r>0?"bottom":"middle"};a<d&&s(i+n)<a&&(u.horizontal="center"),f<p&&s(r+l)<f&&(u.vertical="middle"),o(s(i),s(n))>o(s(r),s(l))?u.important="horizontal":u.important="vertical",t.using.call(this,e,u)}),h.offset(e.extend(T,{using:c}))})},e.ui.position={fit:{left:function(t,e){var i,n=e.within,r=n.isWindow?n.scrollLeft:n.offset.left,a=n.width,s=t.left-e.collisionPosition.marginLeft,l=r-s,u=s+e.collisionWidth-a-r;e.collisionWidth>a?l>0&&u<=0?(i=t.left+l+e.collisionWidth-a-r,t.left+=l-i):t.left=u>0&&l<=0?r:l>u?r+a-e.collisionWidth:r:l>0?t.left+=l:u>0?t.left-=u:t.left=o(t.left-s,t.left)},top:function(t,e){var i,n=e.within,r=n.isWindow?n.scrollTop:n.offset.top,a=e.within.height,s=t.top-e.collisionPosition.marginTop,l=r-s,u=s+e.collisionHeight-a-r;e.collisionHeight>a?l>0&&u<=0?(i=t.top+l+e.collisionHeight-a-r,t.top+=l-i):t.top=u>0&&l<=0?r:l>u?r+a-e.collisionHeight:r:l>0?t.top+=l:u>0?t.top-=u:t.top=o(t.top-s,t.top)}},flip:{left:function(t,e){var i,n,r=e.within,a=r.offset.left+r.scrollLeft,o=r.width,l=r.isWindow?r.scrollLeft:r.offset.left,u=t.left-e.collisionPosition.marginLeft,c=u-l,h=u+e.collisionWidth-o-l,d="left"===e.my[0]?-e.elemWidth:"right"===e.my[0]?e.elemWidth:0,f="left"===e.at[0]?e.targetWidth:"right"===e.at[0]?-e.targetWidth:0,p=-2*e.offset[0];c<0?((i=t.left+d+f+p+e.collisionWidth-o-a)<0||i<s(c))&&(t.left+=d+f+p):h>0&&((n=t.left-e.collisionPosition.marginLeft+d+f+p-l)>0||s(n)<h)&&(t.left+=d+f+p)},top:function(t,e){var i,n,r=e.within,a=r.offset.top+r.scrollTop,o=r.height,l=r.isWindow?r.scrollTop:r.offset.top,u=t.top-e.collisionPosition.marginTop,c=u-l,h=u+e.collisionHeight-o-l,d="top"===e.my[1],f=d?-e.elemHeight:"bottom"===e.my[1]?e.elemHeight:0,p="top"===e.at[1]?e.targetHeight:"bottom"===e.at[1]?-e.targetHeight:0,m=-2*e.offset[1];c<0?(n=t.top+f+p+m+e.collisionHeight-o-a,t.top+f+p+m>c&&(n<0||n<s(c))&&(t.top+=f+p+m)):h>0&&(i=t.top-e.collisionPosition.marginTop+f+p+m-l,t.top+f+p+m>h&&(i>0||s(i)<h)&&(t.top+=f+p+m))}},flipfit:{left:function(){e.ui.position.flip.left.apply(this,arguments),e.ui.position.fit.left.apply(this,arguments)},top:function(){e.ui.position.flip.top.apply(this,arguments),e.ui.position.fit.top.apply(this,arguments)}}},function(){var t,i,n,r,a,o=document.getElementsByTagName("body")[0],s=document.createElement("div");t=document.createElement(o?"div":"body"),n={visibility:"hidden",width:0,height:0,border:0,margin:0,background:"none"},o&&e.extend(n,{position:"absolute",left:"-1000px",top:"-1000px"});for(a in n)t.style[a]=n[a];t.appendChild(s),i=o||document.documentElement,i.insertBefore(t,i.firstChild),s.style.cssText="position: absolute; left: 10.7432222px;",r=e(s).offset().left,e.support.offsetFractions=r>10&&r<11,t.innerHTML="",i.removeChild(t)}(),!1!==e.uiBackCompat&&function(t){var e=t.fn.position;t.fn.position=function(n){if(!n||!n.offset)return e.call(this,n);var r=n.offset.split(" "),a=n.at.split(" ");return 1===r.length&&(r[1]=r[0]),/^\d/.test(r[0])&&(r[0]="+"+r[0]),/^\d/.test(r[1])&&(r[1]="+"+r[1]),1===a.length&&(/left|center|right/.test(a[0])?a[1]="center":(a[1]=a[0],a[0]="center")),e.call(this,t.extend(n,{at:a[0]+r[0]+" "+a[1]+r[1],offset:i}))}}(t)}(t),function(t,e){var i=0;t.widget("ui.autocomplete",{version:"1.9.1",defaultElement:"<input>",options:{appendTo:"body",autoFocus:!1,delay:300,minLength:1,position:{my:"left top",at:"left bottom",collision:"none"},source:null,change:null,close:null,focus:null,open:null,response:null,search:null,select:null},pending:0,_create:function(){var e,i,n;this.isMultiLine=this._isMultiLine(),this.valueMethod=this.element[this.element.is("input,textarea")?"val":"text"],this.isNewMenu=!0,this.element.addClass("ui-autocomplete-input").attr("autocomplete","off"),this._on(this.element,{keydown:function(r){if(this.element.prop("readOnly"))return e=!0,n=!0,i=!0,void 0;e=!1,n=!1,i=!1;var a=t.ui.keyCode;switch(r.keyCode){case a.PAGE_UP:e=!0,this._move("previousPage",r);break;case a.PAGE_DOWN:e=!0,this._move("nextPage",r);break;case a.UP:e=!0,this._keyEvent("previous",r);break;case a.DOWN:e=!0,this._keyEvent("next",r);break;case a.ENTER:case a.NUMPAD_ENTER:this.menu.active&&(e=!0,r.preventDefault(),this.menu.select(r));break;case a.TAB:this.menu.active&&this.menu.select(r);break;case a.ESCAPE:this.menu.element.is(":visible")&&(this._value(this.term),this.close(r),r.preventDefault());break;default:i=!0,this._searchTimeout(r)}},keypress:function(n){if(e)return e=!1,void n.preventDefault();if(!i){var r=t.ui.keyCode;switch(n.keyCode){case r.PAGE_UP:this._move("previousPage",n);break;case r.PAGE_DOWN:this._move("nextPage",n);break;case r.UP:this._keyEvent("previous",n);break;case r.DOWN:this._keyEvent("next",n)}}},input:function(t){if(n)return n=!1,void t.preventDefault();this._searchTimeout(t)},focus:function(){this.selectedItem=null,this.previous=this._value()},blur:function(t){if(this.cancelBlur)return void delete this.cancelBlur;clearTimeout(this.searching),this.close(t),this._change(t)}}),this._initSource(),this.menu=t("<ul>").addClass("ui-autocomplete").appendTo(this.document.find(this.options.appendTo||"body")[0]).menu({input:t(),role:null}).zIndex(this.element.zIndex()+1).hide().data("menu"),this._on(this.menu.element,{mousedown:function(e){e.preventDefault(),this.cancelBlur=!0,this._delay(function(){delete this.cancelBlur});var i=this.menu.element[0];t(e.target).closest(".ui-menu-item").length||this._delay(function(){var e=this;this.document.one("mousedown",function(n){n.target!==e.element[0]&&n.target!==i&&!t.contains(i,n.target)&&e.close()})})},menufocus:function(e,i){if(this.isNewMenu&&(this.isNewMenu=!1,e.originalEvent&&/^mouse/.test(e.originalEvent.type)))return this.menu.blur(),void this.document.one("mousemove",function(){t(e.target).trigger(e.originalEvent)});var n=i.item.data("ui-autocomplete-item")||i.item.data("item.autocomplete");!1!==this._trigger("focus",e,{item:n})?e.originalEvent&&/^key/.test(e.originalEvent.type)&&this._value(n.value):this.liveRegion.text(n.value)},menuselect:function(t,e){var i=e.item.data("ui-autocomplete-item")||e.item.data("item.autocomplete"),n=this.previous;this.element[0]!==this.document[0].activeElement&&(this.element.focus(),this.previous=n,this._delay(function(){this.previous=n,this.selectedItem=i})),!1!==this._trigger("select",t,{item:i})&&this._value(i.value),this.term=this._value(),this.close(t),this.selectedItem=i}}),this.liveRegion=t("<span>",{role:"status","aria-live":"polite"}).addClass("ui-helper-hidden-accessible").insertAfter(this.element),t.fn.bgiframe&&this.menu.element.bgiframe(),this._on(this.window,{beforeunload:function(){this.element.removeAttr("autocomplete")}})},_destroy:function(){clearTimeout(this.searching),this.element.removeClass("ui-autocomplete-input").removeAttr("autocomplete"),this.menu.element.remove(),this.liveRegion.remove()},_setOption:function(t,e){this._super(t,e),"source"===t&&this._initSource(),"appendTo"===t&&this.menu.element.appendTo(this.document.find(e||"body")[0]),"disabled"===t&&e&&this.xhr&&this.xhr.abort()},_isMultiLine:function(){return!!this.element.is("textarea")||!this.element.is("input")&&this.element.prop("isContentEditable")},_initSource:function(){var e,i,n=this;t.isArray(this.options.source)?(e=this.options.source,this.source=function(i,n){n(t.ui.autocomplete.filter(e,i.term))}):"string"==typeof this.options.source?(i=this.options.source,this.source=function(e,r){n.xhr&&n.xhr.abort(),n.xhr=t.ajax({url:i,data:e,dataType:"json",success:function(t){r(t)},error:function(){r([])}})}):this.source=this.options.source},_searchTimeout:function(t){clearTimeout(this.searching),this.searching=this._delay(function(){this.term!==this._value()&&(this.selectedItem=null,this.search(null,t))},this.options.delay)},search:function(t,e){return t=null!=t?t:this._value(),this.term=this._value(),t.length<this.options.minLength?this.close(e):!1!==this._trigger("search",e)?this._search(t):void 0},_search:function(t){this.pending++,this.element.addClass("ui-autocomplete-loading"),this.cancelSearch=!1,this.source({term:t},this._response())},_response:function(){var t=this,e=++i;return function(n){e===i&&t.__response(n),--t.pending||t.element.removeClass("ui-autocomplete-loading")}},__response:function(t){t&&(t=this._normalize(t)),this._trigger("response",null,{content:t}),!this.options.disabled&&t&&t.length&&!this.cancelSearch?(this._suggest(t),this._trigger("open")):this._close()},close:function(t){this.cancelSearch=!0,this._close(t)},_close:function(t){this.menu.element.is(":visible")&&(this.menu.element.hide(),this.menu.blur(),this.isNewMenu=!0,this._trigger("close",t))},_change:function(t){this.previous!==this._value()&&this._trigger("change",t,{item:this.selectedItem})},_normalize:function(e){return e.length&&e[0].label&&e[0].value?e:t.map(e,function(e){return"string"==typeof e?{label:e,value:e}:t.extend({label:e.label||e.value,value:e.value||e.label},e)})},_suggest:function(e){var i=this.menu.element.empty().zIndex(this.element.zIndex()+1);this._renderMenu(i,e),this.menu.refresh(),i.show(),this._resizeMenu(),i.position(t.extend({of:this.element},this.options.position)),this.options.autoFocus&&this.menu.next()},_resizeMenu:function(){var t=this.menu.element;t.outerWidth(Math.max(t.width("").outerWidth()+1,this.element.outerWidth()))},_renderMenu:function(e,i){var n=this;t.each(i,function(t,i){n._renderItemData(e,i)})},_renderItemData:function(t,e){return this._renderItem(t,e).data("ui-autocomplete-item",e)},_renderItem:function(e,i){return t("<li>").append(t("<a>").text(i.label)).appendTo(e)},_move:function(t,e){return this.menu.element.is(":visible")?this.menu.isFirstItem()&&/^previous/.test(t)||this.menu.isLastItem()&&/^next/.test(t)?(this._value(this.term),void this.menu.blur()):void this.menu[t](e):void this.search(null,e)},widget:function(){return this.menu.element},_value:function(){return this.valueMethod.apply(this.element,arguments)},_keyEvent:function(t,e){this.isMultiLine&&!this.menu.element.is(":visible")||(this._move(t,e),e.preventDefault())}}),t.extend(t.ui.autocomplete,{escapeRegex:function(t){return t.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g,"\\$&")},filter:function(e,i){var n=new RegExp(t.ui.autocomplete.escapeRegex(i),"i");return t.grep(e,function(t){return n.test(t.label||t.value||t)})}}),t.widget("ui.autocomplete",t.ui.autocomplete,{options:{messages:{noResults:"No search results.",results:function(t){return t+(t>1?" results are":" result is")+" available, use up and down arrow keys to navigate."}}},__response:function(t){var e;this._superApply(arguments),this.options.disabled||this.cancelSearch||(e=t&&t.length?this.options.messages.results(t.length):this.options.messages.noResults,this.liveRegion.text(e))}})}(t),function(t,e){var i,n,r,a,o="ui-button ui-widget ui-state-default ui-corner-all",s="ui-button-icons-only ui-button-icon-only ui-button-text-icons ui-button-text-icon-primary ui-button-text-icon-secondary ui-button-text-only",l=function(){var e=t(this).find(":ui-button");setTimeout(function(){e.button("refresh")},1)},u=function(e){var i=e.name,n=e.form,r=t([]);return i&&(r=n?t(n).find("[name='"+i+"']"):t("[name='"+i+"']",e.ownerDocument).filter(function(){return!this.form})),r};t.widget("ui.button",{version:"1.9.1",defaultElement:"<button>",options:{disabled:null,text:!0,label:null,icons:{primary:null,secondary:null}},_create:function(){this.element.closest("form").unbind("reset"+this.eventNamespace).bind("reset"+this.eventNamespace,l),"boolean"!=typeof this.options.disabled?this.options.disabled=!!this.element.prop("disabled"):this.element.prop("disabled",this.options.disabled),this._determineButtonType(),this.hasTitle=!!this.buttonElement.attr("title");var e=this,s=this.options,c="checkbox"===this.type||"radio"===this.type,h="ui-state-hover"+(c?"":" ui-state-active"),d="ui-state-focus";null===s.label&&(s.label="input"===this.type?this.buttonElement.val():this.buttonElement.html()),this.buttonElement.addClass(o).attr("role","button").bind("mouseenter"+this.eventNamespace,function(){s.disabled||(t(this).addClass("ui-state-hover"),this===i&&t(this).addClass("ui-state-active"))}).bind("mouseleave"+this.eventNamespace,function(){s.disabled||t(this).removeClass(h)}).bind("click"+this.eventNamespace,function(t){s.disabled&&(t.preventDefault(),t.stopImmediatePropagation())}),this.element.bind("focus"+this.eventNamespace,function(){e.buttonElement.addClass(d)}).bind("blur"+this.eventNamespace,function(){e.buttonElement.removeClass(d)}),c&&(this.element.bind("change"+this.eventNamespace,function(){a||e.refresh()}),this.buttonElement.bind("mousedown"+this.eventNamespace,function(t){s.disabled||(a=!1,n=t.pageX,r=t.pageY)}).bind("mouseup"+this.eventNamespace,function(t){s.disabled||n===t.pageX&&r===t.pageY||(a=!0)})),"checkbox"===this.type?this.buttonElement.bind("click"+this.eventNamespace,function(){if(s.disabled||a)return!1;t(this).toggleClass("ui-state-active"),e.buttonElement.attr("aria-pressed",e.element[0].checked)}):"radio"===this.type?this.buttonElement.bind("click"+this.eventNamespace,function(){if(s.disabled||a)return!1;t(this).addClass("ui-state-active"),e.buttonElement.attr("aria-pressed","true");var i=e.element[0];u(i).not(i).map(function(){return t(this).button("widget")[0]}).removeClass("ui-state-active").attr("aria-pressed","false")}):(this.buttonElement.bind("mousedown"+this.eventNamespace,function(){if(s.disabled)return!1;t(this).addClass("ui-state-active"),i=this,e.document.one("mouseup",function(){i=null})}).bind("mouseup"+this.eventNamespace,function(){if(s.disabled)return!1;t(this).removeClass("ui-state-active")}).bind("keydown"+this.eventNamespace,function(e){if(s.disabled)return!1;(e.keyCode===t.ui.keyCode.SPACE||e.keyCode===t.ui.keyCode.ENTER)&&t(this).addClass("ui-state-active")}).bind("keyup"+this.eventNamespace,function(){t(this).removeClass("ui-state-active")}),this.buttonElement.is("a")&&this.buttonElement.keyup(function(e){e.keyCode===t.ui.keyCode.SPACE&&t(this).click()})),this._setOption("disabled",s.disabled),this._resetButton()},_determineButtonType:function(){var t,e,i;this.element.is("[type=checkbox]")?this.type="checkbox":this.element.is("[type=radio]")?this.type="radio":this.element.is("input")?this.type="input":this.type="button","checkbox"===this.type||"radio"===this.type?(t=this.element.parents().last(),e="label[for='"+this.element.attr("id")+"']",this.buttonElement=t.find(e),this.buttonElement.length||(t=t.length?t.siblings():this.element.siblings(),this.buttonElement=t.filter(e),this.buttonElement.length||(this.buttonElement=t.find(e))),this.element.addClass("ui-helper-hidden-accessible"),i=this.element.is(":checked"),i&&this.buttonElement.addClass("ui-state-active"),this.buttonElement.prop("aria-pressed",i)):this.buttonElement=this.element},widget:function(){return this.buttonElement},_destroy:function(){this.element.removeClass("ui-helper-hidden-accessible"),this.buttonElement.removeClass(o+" ui-state-hover ui-state-active  "+s).removeAttr("role").removeAttr("aria-pressed").html(this.buttonElement.find(".ui-button-text").html()),this.hasTitle||this.buttonElement.removeAttr("title")},_setOption:function(t,e){if(this._super(t,e),"disabled"===t)return void(e?this.element.prop("disabled",!0):this.element.prop("disabled",!1));this._resetButton()},refresh:function(){var e=this.element.is(":disabled")||this.element.hasClass("ui-button-disabled");e!==this.options.disabled&&this._setOption("disabled",e),"radio"===this.type?u(this.element[0]).each(function(){t(this).is(":checked")?t(this).button("widget").addClass("ui-state-active").attr("aria-pressed","true"):t(this).button("widget").removeClass("ui-state-active").attr("aria-pressed","false")}):"checkbox"===this.type&&(this.element.is(":checked")?this.buttonElement.addClass("ui-state-active").attr("aria-pressed","true"):this.buttonElement.removeClass("ui-state-active").attr("aria-pressed","false"))},_resetButton:function(){if("input"===this.type)return void(this.options.label&&this.element.val(this.options.label));var e=this.buttonElement.removeClass(s),i=t("<span></span>",this.document[0]).addClass("ui-button-text").html(this.options.label).appendTo(e.empty()).text(),n=this.options.icons,r=n.primary&&n.secondary,a=[];n.primary||n.secondary?(this.options.text&&a.push("ui-button-text-icon"+(r?"s":n.primary?"-primary":"-secondary")),n.primary&&e.prepend("<span class='ui-button-icon-primary ui-icon "+n.primary+"'></span>"),n.secondary&&e.append("<span class='ui-button-icon-secondary ui-icon "+n.secondary+"'></span>"),this.options.text||(a.push(r?"ui-button-icons-only":"ui-button-icon-only"),this.hasTitle||e.attr("title",t.trim(i)))):a.push("ui-button-text-only"),e.addClass(a.join(" "))}}),t.widget("ui.buttonset",{version:"1.9.1",options:{items:"button, input[type=button], input[type=submit], input[type=reset], input[type=checkbox], input[type=radio], a, :data(button)"},_create:function(){this.element.addClass("ui-buttonset")},_init:function(){this.refresh()},_setOption:function(t,e){"disabled"===t&&this.buttons.button("option",t,e),this._super(t,e)},refresh:function(){var e="rtl"===this.element.css("direction");this.buttons=this.element.find(this.options.items).filter(":ui-button").button("refresh").end().not(":ui-button").button().end().map(function(){return t(this).button("widget")[0]}).removeClass("ui-corner-all ui-corner-left ui-corner-right").filter(":first").addClass(e?"ui-corner-right":"ui-corner-left").end().filter(":last").addClass(e?"ui-corner-left":"ui-corner-right").end().end()},_destroy:function(){this.element.removeClass("ui-buttonset"),this.buttons.map(function(){return t(this).button("widget")[0]}).removeClass("ui-corner-left ui-corner-right").end().button("destroy")}})}(t),function(t,e){var i=!1;t.widget("ui.menu",{version:"1.9.1",defaultElement:"<ul>",delay:300,options:{icons:{submenu:"ui-icon-carat-1-e"},menus:"ul",position:{my:"left top",at:"right top"},role:"menu",blur:null,focus:null,select:null},_create:function(){this.activeMenu=this.element,this.element.uniqueId().addClass("ui-menu ui-widget ui-widget-content ui-corner-all").toggleClass("ui-menu-icons",!!this.element.find(".ui-icon").length).attr({role:this.options.role,tabIndex:0}).bind("click"+this.eventNamespace,t.proxy(function(t){this.options.disabled&&t.preventDefault()},this)),this.options.disabled&&this.element.addClass("ui-state-disabled").attr("aria-disabled","true"),this._on({"mousedown .ui-menu-item > a":function(t){t.preventDefault()},"click .ui-state-disabled > a":function(t){t.preventDefault()},"click .ui-menu-item:has(a)":function(e){var n=t(e.target).closest(".ui-menu-item");!i&&n.not(".ui-state-disabled").length&&(i=!0,this.select(e),n.has(".ui-menu").length?this.expand(e):this.element.is(":focus")||(this.element.trigger("focus",[!0]),this.active&&1===this.active.parents(".ui-menu").length&&clearTimeout(this.timer)))},"mouseenter .ui-menu-item":function(e){var i=t(e.currentTarget);i.siblings().children(".ui-state-active").removeClass("ui-state-active"),this.focus(e,i)},mouseleave:"collapseAll","mouseleave .ui-menu":"collapseAll",focus:function(t,e){var i=this.active||this.element.children(".ui-menu-item").eq(0);e||this.focus(t,i)},blur:function(e){this._delay(function(){t.contains(this.element[0],this.document[0].activeElement)||this.collapseAll(e)})},keydown:"_keydown"}),this.refresh(),this._on(this.document,{click:function(e){t(e.target).closest(".ui-menu").length||this.collapseAll(e),i=!1}})},_destroy:function(){this.element.removeAttr("aria-activedescendant").find(".ui-menu").andSelf().removeClass("ui-menu ui-widget ui-widget-content ui-corner-all ui-menu-icons").removeAttr("role").removeAttr("tabIndex").removeAttr("aria-labelledby").removeAttr("aria-expanded").removeAttr("aria-hidden").removeAttr("aria-disabled").removeUniqueId().show(),this.element.find(".ui-menu-item").removeClass("ui-menu-item").removeAttr("role").removeAttr("aria-disabled").children("a").removeUniqueId().removeClass("ui-corner-all ui-state-hover").removeAttr("tabIndex").removeAttr("role").removeAttr("aria-haspopup").children().each(function(){var e=t(this);e.data("ui-menu-submenu-carat")&&e.remove()}),this.element.find(".ui-menu-divider").removeClass("ui-menu-divider ui-widget-content")},_keydown:function(e){function i(t){return t.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g,"\\$&")}var n,r,a,o,s,l=!0;switch(e.keyCode){case t.ui.keyCode.PAGE_UP:this.previousPage(e);break;case t.ui.keyCode.PAGE_DOWN:this.nextPage(e);break;case t.ui.keyCode.HOME:this._move("first","first",e);break;case t.ui.keyCode.END:this._move("last","last",e);break;case t.ui.keyCode.UP:this.previous(e);break;case t.ui.keyCode.DOWN:this.next(e);break;case t.ui.keyCode.LEFT:this.collapse(e);break;case t.ui.keyCode.RIGHT:this.active&&!this.active.is(".ui-state-disabled")&&this.expand(e);break;case t.ui.keyCode.ENTER:case t.ui.keyCode.SPACE:this._activate(e);break;case t.ui.keyCode.ESCAPE:this.collapse(e);break;default:l=!1,r=this.previousFilter||"",a=String.fromCharCode(e.keyCode),o=!1,clearTimeout(this.filterTimer),a===r?o=!0:a=r+a,s=new RegExp("^"+i(a),"i"),n=this.activeMenu.children(".ui-menu-item").filter(function(){return s.test(t(this).children("a").text())}),n=o&&-1!==n.index(this.active.next())?this.active.nextAll(".ui-menu-item"):n,n.length||(a=String.fromCharCode(e.keyCode),s=new RegExp("^"+i(a),"i"),n=this.activeMenu.children(".ui-menu-item").filter(function(){return s.test(t(this).children("a").text())})),n.length?(this.focus(e,n),n.length>1?(this.previousFilter=a,this.filterTimer=this._delay(function(){delete this.previousFilter},1e3)):delete this.previousFilter):delete this.previousFilter}l&&e.preventDefault()},_activate:function(t){this.active.is(".ui-state-disabled")||(this.active.children("a[aria-haspopup='true']").length?this.expand(t):this.select(t))},refresh:function(){var e,i=this.options.icons.submenu,n=this.element.find(this.options.menus+":not(.ui-menu)").addClass("ui-menu ui-widget ui-widget-content ui-corner-all").hide().attr({role:this.options.role,"aria-hidden":"true","aria-expanded":"false"});e=n.add(this.element),e.children(":not(.ui-menu-item):has(a)").addClass("ui-menu-item").attr("role","presentation").children("a").uniqueId().addClass("ui-corner-all").attr({tabIndex:-1,role:this._itemRole()}),e.children(":not(.ui-menu-item)").each(function(){var e=t(this);/[^\-—–\s]/.test(e.text())||e.addClass("ui-widget-content ui-menu-divider")}),e.children(".ui-state-disabled").attr("aria-disabled","true"),n.each(function(){var e=t(this),n=e.prev("a"),r=t("<span>").addClass("ui-menu-icon ui-icon "+i).data("ui-menu-submenu-carat",!0);n.attr("aria-haspopup","true").prepend(r),e.attr("aria-labelledby",n.attr("id"))}),this.active&&!t.contains(this.element[0],this.active[0])&&this.blur()},_itemRole:function(){return{menu:"menuitem",listbox:"option"}[this.options.role]},focus:function(t,e){var i,n;this.blur(t,t&&"focus"===t.type),this._scrollIntoView(e),this.active=e.first(),n=this.active.children("a").addClass("ui-state-focus"),this.options.role&&this.element.attr("aria-activedescendant",n.attr("id")),this.active.parent().closest(".ui-menu-item").children("a:first").addClass("ui-state-active"),t&&"keydown"===t.type?this._close():this.timer=this._delay(function(){this._close()},this.delay),i=e.children(".ui-menu"),i.length&&/^mouse/.test(t.type)&&this._startOpening(i),this.activeMenu=e.parent(),this._trigger("focus",t,{item:e})},_scrollIntoView:function(e){var i,n,r,a,o,s;this._hasScroll()&&(i=parseFloat(t.css(this.activeMenu[0],"borderTopWidth"))||0,n=parseFloat(t.css(this.activeMenu[0],"paddingTop"))||0,r=e.offset().top-this.activeMenu.offset().top-i-n,a=this.activeMenu.scrollTop(),o=this.activeMenu.height(),s=e.height(),r<0?this.activeMenu.scrollTop(a+r):r+s>o&&this.activeMenu.scrollTop(a+r-o+s))},blur:function(t,e){e||clearTimeout(this.timer),this.active&&(this.active.children("a").removeClass("ui-state-focus"),this.active=null,this._trigger("blur",t,{item:this.active}))},_startOpening:function(t){clearTimeout(this.timer),"true"===t.attr("aria-hidden")&&(this.timer=this._delay(function(){this._close(),this._open(t)},this.delay))},_open:function(e){var i=t.extend({of:this.active},this.options.position);clearTimeout(this.timer),this.element.find(".ui-menu").not(e.parents(".ui-menu")).hide().attr("aria-hidden","true"),e.show().removeAttr("aria-hidden").attr("aria-expanded","true").position(i)},collapseAll:function(e,i){clearTimeout(this.timer),this.timer=this._delay(function(){var n=i?this.element:t(e&&e.target).closest(this.element.find(".ui-menu"));n.length||(n=this.element),this._close(n),this.blur(e),this.activeMenu=n},this.delay)},_close:function(t){t||(t=this.active?this.active.parent():this.element),t.find(".ui-menu").hide().attr("aria-hidden","true").attr("aria-expanded","false").end().find("a.ui-state-active").removeClass("ui-state-active")},collapse:function(t){var e=this.active&&this.active.parent().closest(".ui-menu-item",this.element);e&&e.length&&(this._close(),this.focus(t,e))},expand:function(t){var e=this.active&&this.active.children(".ui-menu ").children(".ui-menu-item").first();e&&e.length&&(this._open(e.parent()),this._delay(function(){this.focus(t,e)}))},next:function(t){this._move("next","first",t)},previous:function(t){this._move("prev","last",t)},isFirstItem:function(){return this.active&&!this.active.prevAll(".ui-menu-item").length},isLastItem:function(){return this.active&&!this.active.nextAll(".ui-menu-item").length},_move:function(t,e,i){var n;this.active&&(n="first"===t||"last"===t?this.active["first"===t?"prevAll":"nextAll"](".ui-menu-item").eq(-1):this.active[t+"All"](".ui-menu-item").eq(0)),n&&n.length&&this.active||(n=this.activeMenu.children(".ui-menu-item")[e]()),this.focus(i,n)},nextPage:function(e){var i,n,r;if(!this.active)return void this.next(e);this.isLastItem()||(this._hasScroll()?(n=this.active.offset().top,r=this.element.height(),this.active.nextAll(".ui-menu-item").each(function(){return i=t(this),i.offset().top-n-r<0}),this.focus(e,i)):this.focus(e,this.activeMenu.children(".ui-menu-item")[this.active?"last":"first"]()))},previousPage:function(e){var i,n,r;if(!this.active)return void this.next(e);this.isFirstItem()||(this._hasScroll()?(n=this.active.offset().top,r=this.element.height(),this.active.prevAll(".ui-menu-item").each(function(){return i=t(this),i.offset().top-n+r>0}),this.focus(e,i)):this.focus(e,this.activeMenu.children(".ui-menu-item").first()))},_hasScroll:function(){return this.element.outerHeight()<this.element.prop("scrollHeight")},select:function(e){this.active=this.active||t(e.target).closest(".ui-menu-item");var i={item:this.active};this.active.has(".ui-menu").length||this.collapseAll(e,!0),this._trigger("select",e,i)}})}(t),function(t,e){t.widget("ui.slider",t.ui.mouse,{version:"1.9.1",widgetEventPrefix:"slide",options:{animate:!1,distance:0,max:100,min:0,orientation:"horizontal",range:!1,step:1,value:0,values:null},_create:function(){var 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h(t)}}),d=t.View.extend({className:"config-settings-view",render:function(){var t=this.$el;return this.collection.each(function(e,i){if(!e.get("hidden")){var r="param_"+i,a=e.get("type"),s=e.get("value"),u=n("<div class='form-row' />").appendTo(t);if(u.append(n("<label />").attr("for",r).text(e.get("label")+":")),"bool"===a)u.append(n('<input type="checkbox" />').attr("id",r).attr("name",r).attr("checked",s));else if("text"===a)u.append(n('<input type="text"/>').attr("id",r).val(s).click(function(){n(this).select()}));else if("select"===a){var c=n("<select />").attr("id",r);o.each(e.get("options"),function(t){n("<option/>").text(t.label).attr("value",t.value).appendTo(c)}),c.val(s),u.append(c)}else if("color"===a){var h=n("<div/>").appendTo(u),d=n("<input />").attr("id",r).attr("name",r).val(s).css("float","left").appendTo(h).click(function(t){n(".tooltip").removeClass("in");var e=n(this).siblings(".tooltip").addClass("in");e.css({left:n(this).position().left+n(this).width()+5,top:n(this).position().top-n(e).height()/2+n(this).height()/2}).show(),e.click(function(t){t.stopPropagation()}),n(document).bind("click.color-picker",function(){e.hide(),n(document).unbind("click.color-picker")}),t.stopPropagation()}),f=n("<a href='javascript:void(0)'/>").addClass("icon-button arrow-circle").appendTo(h).attr("title","Set new random color").tooltip(),p=n("<div class='tooltip right' style='position: absolute;' />").appendTo(h).hide(),m=n("<div class='tooltip-inner' style='text-align: inherit'></div>").appendTo(p),g=(n("<div class='tooltip-arrow'></div>").appendTo(p),n.farbtastic(m,{width:100,height:100,callback:d,color:s}));h.append(n("<div/>").css("clear","both")),function(t){f.click(function(){t.setColor(l.default.get_random_color())})}(g)}else u.append(n("<input />").attr("id",r).attr("name",r).val(s));e.help&&u.append(n("<div class='help'/>").text(e.help))}}),this},render_in_modal:function(t){var e=this,i=function(){Galaxy.modal.hide(),n(window).unbind("keypress.check_enter_esc")},r=function(){Galaxy.modal.hide(),n(window).unbind("keypress.check_enter_esc"),e.update_from_form()},a=function(t){27===(t.keyCode||t.which)?i():13===(t.keyCode||t.which)&&r()};n(window).bind("keypress.check_enter_esc",a),0===this.$el.children().length&&this.render(),Galaxy.modal.show({title:t||"Configure",body:this.$el,buttons:{Cancel:i,OK:r}})},update_from_form:function(){var t=this;this.collection.each(function(e,i){if(!e.get("hidden")){var n="param_"+i,r=t.$el.find("#"+n).val();"bool"===e.get("type")&&(r=t.$el.find("#"+n).is(":checked")),e.set_value(r)}})}});e.default={ConfigSetting:c,ConfigSettingCollection:h,ConfigSettingCollectionView:d}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0}),e.View=void 0;var o=i(4),s=a(o),l=i(6),u=a(l),c=e.View=t.View.extend({visible:!1,initialize:function(e){var i=this;this.model=e&&e.model||new t.Model({id:s.default.uid(),cls:"ui-portlet",title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,collapsible:!1,collapsible_button:!1,collapsed:!1,onchange_title:null}).set(e),this.setElement(this._template()),this.$body=this.$(".portlet-body"),this.$title_text=this.$(".portlet-title-text"),this.$title_icon=this.$(".portlet-title-icon"),this.$header=this.$(".portlet-header"),this.$content=this.$(".portlet-content"),this.$backdrop=this.$(".portlet-backdrop"),this.$buttons=this.$(".portlet-buttons"),this.$operations=this.$(".portlet-operations"),this.model.get("body")&&this.append(this.model.get("body")),this.collapsible_button=new u.default.ButtonIcon({icon:"fa-eye",tooltip:"Collapse/Expand",cls:"ui-button-icon-plain",onclick:function(){i[i.collapsed?"expand":"collapse"]()}}),this.render()},render:function(){var t=this,e=this.model.attributes;return this.$el.removeClass().addClass(e.cls).attr("id",e.id),this.$header[e.title?"show":"hide"](),this.$title_text.html(e.title),n.each([this.$content,this.$body],function(t){t[e.nopadding?"addClass":"removeClass"]("no-padding")}),e.icon?this.$title_icon.removeClass().addClass("portlet-title-icon fa").addClass(e.icon).show():this.$title_icon.hide(),this.$title_text[e.collapsible?"addClass":"removeClass"]("no-highlight 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this.$body},show:function(){this.visible=!0,this.$el.fadeIn("fast")},hide:function(){this.visible=!1,this.$el.hide()},enableButton:function(t){this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(t){this.$buttons.find("#"+t).prop("disabled",!0)},hideOperation:function(t){this.$operations.find("#"+t).hide()},showOperation:function(t){this.$operations.find("#"+t).show()},setOperation:function(t,e){this.$operations.find("#"+t).off("click").on("click",e)},title:function(t){return t&&this.$title_text.html(t),this.$title_text.html()},collapse:function(){this.collapsed=!0,this.$content.height("0%"),this.$body.hide(),this.collapsible_button.setIcon("fa-eye-slash")},expand:function(){this.collapsed=!1,this.$content.height("100%"),this.$body.fadeIn("fast"),this.collapsible_button.setIcon("fa-eye")},disable:function(){this.$backdrop.show()},enable:function(){this.$backdrop.hide()},_template:function(){return r("<div/>").append(r("<div/>").addClass("portlet-header").append(r("<div/>").addClass("portlet-operations")).append(r("<div/>").addClass("portlet-title").append(r("<i/>").addClass("portlet-title-icon")).append(r("<span/>").addClass("portlet-title-text")))).append(r("<div/>").addClass("portlet-content").append(r("<div/>").addClass("portlet-body")).append(r("<div/>").addClass("portlet-buttons"))).append(r("<div/>").addClass("portlet-backdrop"))}});e.default={View:c}}).call(e,i(2),i(1),i(0))},,function(t,e,i){(function(t){!function(t){t.fn.farbtastic=function(e){return t.farbtastic(this,e),this},t.farbtastic=function(e,i){var e=t(e)[0];return e.farbtastic||(e.farbtastic=new t._farbtastic(e,i))},t._farbtastic=function(e,i){var n=this;n.linkTo=function(e){return"object"==typeof n.callback&&t(n.callback).unbind("keyup",n.updateValue),n.color=null,"function"==typeof e?n.callback=e:"object"!=typeof e&&"string"!=typeof 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a=Math.floor(i/2);e(a,a,function(t,e,i,a){i=Math.round(255*i),n.ctxMask.fillStyle="rgba("+i+", "+i+", "+i+", "+a+")",n.ctxMask.fillRect(2*t-r-1,2*e-r-1,2,2)})}},n.drawMarkers=function(){var t=i.width,e=Math.ceil(n.markerSize/4),r=n.markerSize-e+1,a=6.28*n.hsl[0],o=Math.sin(a)*n.radius,s=-Math.cos(a)*n.radius,l=2*n.square*(.5-n.hsl[1]),u=2*n.square*(.5-n.hsl[2]),c=n.invert?"#fff":"#000",h=n.invert?"#000":"#fff",d=[{x:o,y:s,r:r,c:"#000",lw:e+1},{x:o,y:s,r:n.markerSize,c:"#fff",lw:e},{x:l,y:u,r:r,c:h,lw:e+1},{x:l,y:u,r:n.markerSize,c:c,lw:e}];n.ctxOverlay.clearRect(-n.mid,-n.mid,t,t);for(var f=0;f<d.length;f++){var p=d[f];n.ctxOverlay.lineWidth=p.lw,n.ctxOverlay.strokeStyle=p.c,n.ctxOverlay.beginPath(),n.ctxOverlay.arc(p.x,p.y,p.r,0,2*Math.PI,!0),n.ctxOverlay.stroke()}},n.updateDisplay=function(){n.invert=.3*n.rgb[0]+.59*n.rgb[1]+.11*n.rgb[2]<=.6,n.solidFill.css("backgroundColor",n.pack(n.HSLToRGB([n.hsl[0],1,.5]))),n.drawMarkers(),"object"==typeof n.callback?(t(n.callback).css({backgroundColor:n.color,color:n.invert?"#fff":"#000"}),t(n.callback).each(function(){"string"==typeof this.value&&this.value!=n.color&&(this.value=n.color)}).change()):"function"==typeof n.callback&&n.callback.call(n,n.color)},n.widgetCoords=function(t){return{x:t.pageX-n.offset.left-n.mid,y:t.pageY-n.offset.top-n.mid}},n.mousedown=function(i){t._farbtastic.dragging||(t(document).bind("mousemove",n.mousemove).bind("mouseup",n.mouseup),t._farbtastic.dragging=!0),n.offset=t(e).offset();var r=n.widgetCoords(i);return n.circleDrag=Math.max(Math.abs(r.x),Math.abs(r.y))>n.square+2,n.mousemove(i),!1},n.mousemove=function(t){var e=n.widgetCoords(t);if(n.circleDrag){var i=Math.atan2(e.x,-e.y)/6.28;n.setHSL([(i+1)%1,n.hsl[1],n.hsl[2]])}else{var r=Math.max(0,Math.min(1,-e.x/n.square/2+.5)),a=Math.max(0,Math.min(1,-e.y/n.square/2+.5));n.setHSL([n.hsl[0],r,a])}return!1},n.mouseup=function(){t(document).unbind("mousemove",n.mousemove),t(document).unbind("mouseup",n.mouseup),t._farbtastic.dragging=!1},n.dec2hex=function(t){return(t<16?"0":"")+t.toString(16)},n.packDX=function(t,e){return"#"+n.dec2hex(e)+n.dec2hex(t)+n.dec2hex(t)+n.dec2hex(t)},n.pack=function(t){var e=Math.round(255*t[0]),i=Math.round(255*t[1]),r=Math.round(255*t[2]);return"#"+n.dec2hex(e)+n.dec2hex(i)+n.dec2hex(r)},n.unpack=function(t){function e(e){return parseInt(t.substring(e,e+2),16)/255}function e(e){return parseInt(t.substring(e,e+1),16)/15}return 7==t.length?[e(1),e(3),e(5)]:4==t.length?[e(1),e(2),e(3)]:void 0},n.HSLToRGB=function(t){var e,i,n=t[0],r=t[1],a=t[2];return i=a<=.5?a*(r+1):a+r-a*r,e=2*a-i,[this.hueToRGB(e,i,n+.33333),this.hueToRGB(e,i,n),this.hueToRGB(e,i,n-.33333)]},n.hueToRGB=function(t,e,i){return i=(i+1)%1,6*i<1?t+(e-t)*i*6:2*i<1?e:3*i<2?t+(e-t)*(.66666-i)*6:t},n.RGBToHSL=function(t){var e=t[0],i=t[1],n=t[2],r=Math.min(e,i,n),a=Math.max(e,i,n),o=a-r,s=0,l=0,u=(r+a)/2;return u>0&&u<1&&(l=o/(u<.5?2*u:2-2*u)),o>0&&(a==e&&a!=i&&(s+=(i-n)/o),a==i&&a!=n&&(s+=2+(n-e)/o),a==n&&a!=e&&(s+=4+(e-i)/o),s/=6),[s,l,u]},i.callback||(i={callback:i}),i=t.extend({width:300,wheelWidth:(i.width||300)/10,callback:null},i),n.initWidget(),t("canvas.farbtastic-overlay",e).mousedown(n.mousedown),i.callback&&n.linkTo(i.callback),n.color||n.setColor("#808080")}}(t)}).call(e,i(0))},function(t,e,i){"use strict";(function(t,i,n){Object.defineProperty(e,"__esModule",{value:!0});var r=t.Model.extend({defaults:{title:"",icon_class:"",on_click:null,menu_options:null,is_menu_button:!0,id:null,href:null,target:null,enabled:!0,visible:!0,tooltip_config:{}}}),a=t.View.extend({initialize:function(){this.model.attributes.tooltip_config={placement:"bottom"},this.model.bind("change",this.render,this)},render:function(){this.$el.tooltip("hide");var t=this.template(this.model.toJSON());return t.tooltip(this.model.get("tooltip_config")),this.$el.replaceWith(t),this.setElement(t),this},events:{click:"click"},click:function(t){return!i.isFunction(this.model.get("on_click"))||(this.model.get("on_click")(t),!1)},template:function(t){var e='title="'+t.title+'" class="icon-button';return t.is_menu_button&&(e+=" menu-button"),e+=" "+t.icon_class,t.enabled||(e+="_disabled"),e+='"',t.id&&(e+=' id="'+t.id+'"'),e+=' href="'+t.href+'"',t.target&&(e+=' target="'+t.target+'"'),t.visible||(e+=' style="display: none;"'),e=t.enabled?"<a "+e+"/>":"<span 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e,i,n,r,a,o=this.dropdown,s=this.container.offset(),l=this.container.outerHeight(!1),u=this.container.outerWidth(!1),c=o.outerHeight(!1),h=t(window),d=h.width(),f=h.height(),p=h.scrollLeft()+d,m=h.scrollTop()+f,v=s.top+l,g=s.left,_=v+c<=m,y=s.top-c>=h.scrollTop(),b=o.outerWidth(!1),w=g+b<=p,x=o.hasClass("select2-drop-above");x?(i=!0,!y&&_&&(n=!0,i=!1)):(i=!1,!_&&y&&(n=!0,i=!0)),n&&(o.hide(),s=this.container.offset(),l=this.container.outerHeight(!1),u=this.container.outerWidth(!1),c=o.outerHeight(!1),p=h.scrollLeft()+d,m=h.scrollTop()+f,v=s.top+l,g=s.left,b=o.outerWidth(!1),w=g+b<=p,o.show(),this.focusSearch()),this.opts.dropdownAutoWidth?(a=t(".select2-results",o)[0],o.addClass("select2-drop-auto-width"),o.css("width",""),b=o.outerWidth(!1)+(a.scrollHeight===a.clientHeight?0:I.width),b>u?u=b:b=u,c=o.outerHeight(!1),w=g+b<=p):this.container.removeClass("select2-drop-auto-width"),"static"!==this.body.css("position")&&(e=this.body.offset(),v-=e.top,g-=e.left),w||(g=s.left+this.container.outerWidth(!1)-b),r={left:g,width:u},i?(r.top=s.top-c,r.bottom="auto",this.container.addClass("select2-drop-above"),o.addClass("select2-drop-above")):(r.top=v,r.bottom="auto",this.container.removeClass("select2-drop-above"),o.removeClass("select2-drop-above")),r=t.extend(r,S(this.opts.dropdownCss,this.opts.element)),o.css(r)},shouldOpen:function(){var e;return!this.opened()&&(!1!==this._enabled&&!0!==this._readonly&&(e=t.Event("select2-opening"),this.opts.element.trigger(e),!e.isDefaultPrevented()))},clearDropdownAlignmentPreference:function(){this.container.removeClass("select2-drop-above"),this.dropdown.removeClass("select2-drop-above")},open:function(){return!!this.shouldOpen()&&(this.opening(),N.on("mousemove.select2Event",function(t){L.x=t.pageX,L.y=t.pageY}),!0)},opening:function(){var e,n=this.containerEventName,r="scroll."+n,a="resize."+n,o="orientationchange."+n;this.container.addClass("select2-dropdown-open").addClass("select2-container-active"),this.clearDropdownAlignmentPreference(),this.dropdown[0]!==this.body.children().last()[0]&&this.dropdown.detach().appendTo(this.body),e=t("#select2-drop-mask"),0==e.length&&(e=t(document.createElement("div")),e.attr("id","select2-drop-mask").attr("class","select2-drop-mask"),e.hide(),e.appendTo(this.body),e.on("mousedown touchstart click",function(n){i(e);var r,a=t("#select2-drop");a.length>0&&(r=a.data("select2"),r.opts.selectOnBlur&&r.selectHighlighted({noFocus:!0}),r.close(),n.preventDefault(),n.stopPropagation())})),this.dropdown.prev()[0]!==e[0]&&this.dropdown.before(e),t("#select2-drop").removeAttr("id"),this.dropdown.attr("id","select2-drop"),e.show(),this.positionDropdown(),this.dropdown.show(),this.positionDropdown(),this.dropdown.addClass("select2-drop-active");var s=this;this.container.parents().add(window).each(function(){t(this).on(a+" "+r+" "+o,function(t){s.opened()&&s.positionDropdown()})})},close:function(){if(this.opened()){var e=this.containerEventName,i="scroll."+e,n="resize."+e,r="orientationchange."+e;this.container.parents().add(window).each(function(){t(this).off(i).off(n).off(r)}),this.clearDropdownAlignmentPreference(),t("#select2-drop-mask").hide(),this.dropdown.removeAttr("id"),this.dropdown.hide(),this.container.removeClass("select2-dropdown-open").removeClass("select2-container-active"),this.results.empty(),N.off("mousemove.select2Event"),this.clearSearch(),this.search.removeClass("select2-active"),this.opts.element.trigger(t.Event("select2-close"))}},externalSearch:function(t){this.open(),this.search.val(t),this.updateResults(!1)},clearSearch:function(){},getMaximumSelectionSize:function(){return S(this.opts.maximumSelectionSize,this.opts.element)},ensureHighlightVisible:function(){var e,i,n,r,a,o,s,l,u=this.results;if(!((i=this.highlight())<0)){if(0==i)return void u.scrollTop(0);e=this.findHighlightableChoices().find(".select2-result-label"),n=t(e[i]),l=(n.offset()||{}).top||0,r=l+n.outerHeight(!0),i===e.length-1&&(s=u.find("li.select2-more-results"),s.length>0&&(r=s.offset().top+s.outerHeight(!0))),a=u.offset().top+u.outerHeight(!0),r>a&&u.scrollTop(u.scrollTop()+(r-a)),o=l-u.offset().top,o<0&&"none"!=n.css("display")&&u.scrollTop(u.scrollTop()+o)}},findHighlightableChoices:function(){return this.results.find(".select2-result-selectable:not(.select2-disabled):not(.select2-selected)")},moveHighlight:function(e){for(var i=this.findHighlightableChoices(),n=this.highlight();n>-1&&n<i.length;){n+=e;var r=t(i[n]);if(r.hasClass("select2-result-selectable")&&!r.hasClass("select2-disabled")&&!r.hasClass("select2-selected")){this.highlight(n);break}}},highlight:function(e){var i,n,a=this.findHighlightableChoices();if(0===arguments.length)return r(a.filter(".select2-highlighted")[0],a.get());e>=a.length&&(e=a.length-1),e<0&&(e=0),this.removeHighlight(),i=t(a[e]),i.addClass("select2-highlighted"),this.search.attr("aria-activedescendant",i.find(".select2-result-label").attr("id")),this.ensureHighlightVisible(),this.liveRegion.text(i.text()),(n=i.data("select2-data"))&&this.opts.element.trigger({type:"select2-highlight",val:this.id(n),choice:n})},removeHighlight:function(){this.results.find(".select2-highlighted").removeClass("select2-highlighted")},touchMoved:function(){this._touchMoved=!0},clearTouchMoved:function(){this._touchMoved=!1},countSelectableResults:function(){return this.findHighlightableChoices().length},highlightUnderEvent:function(e){var i=t(e.target).closest(".select2-result-selectable");if(i.length>0&&!i.is(".select2-highlighted")){var n=this.findHighlightableChoices();this.highlight(n.index(i))}else 0==i.length&&this.removeHighlight()},loadMoreIfNeeded:function(){var t=this.results,e=t.find("li.select2-more-results"),i=this.resultsPage+1,n=this,r=this.search.val(),a=this.context;0!==e.length&&e.offset().top-t.offset().top-t.height()<=this.opts.loadMorePadding&&(e.addClass("select2-active"),this.opts.query({element:this.opts.element,term:r,page:i,context:a,matcher:this.opts.matcher,callback:this.bind(function(o){n.opened()&&(n.opts.populateResults.call(this,t,o.results,{term:r,page:i,context:a}),n.postprocessResults(o,!1,!1),!0===o.more?(e.detach().appendTo(t).text(S(n.opts.formatLoadMore,n.opts.element,i+1)),window.setTimeout(function(){n.loadMoreIfNeeded()},10)):e.remove(),n.positionDropdown(),n.resultsPage=i,n.context=o.context,this.opts.element.trigger({type:"select2-loaded",items:o}))})}))},tokenize:function(){},updateResults:function(i){function n(){u.removeClass("select2-active"),d.positionDropdown(),c.find(".select2-no-results,.select2-selection-limit,.select2-searching").length?d.liveRegion.text(c.text()):d.liveRegion.text(d.opts.formatMatches(c.find(".select2-result-selectable").length))}function r(t){c.html(t),n()}var a,s,l,u=this.search,c=this.results,h=this.opts,d=this,f=u.val(),p=t.data(this.container,"select2-last-term");if((!0===i||!p||!o(f,p))&&(t.data(this.container,"select2-last-term",f),!0===i||!1!==this.showSearchInput&&this.opened())){l=++this.queryCount;var m=this.getMaximumSelectionSize();if(m>=1&&(a=this.data(),t.isArray(a)&&a.length>=m&&C(h.formatSelectionTooBig,"formatSelectionTooBig")))return void r("<li class='select2-selection-limit'>"+S(h.formatSelectionTooBig,h.element,m)+"</li>");if(u.val().length<h.minimumInputLength)return r(C(h.formatInputTooShort,"formatInputTooShort")?"<li class='select2-no-results'>"+S(h.formatInputTooShort,h.element,u.val(),h.minimumInputLength)+"</li>":""),void(i&&this.showSearch&&this.showSearch(!0));if(h.maximumInputLength&&u.val().length>h.maximumInputLength)return void r(C(h.formatInputTooLong,"formatInputTooLong")?"<li class='select2-no-results'>"+S(h.formatInputTooLong,h.element,u.val(),h.maximumInputLength)+"</li>":"");h.formatSearching&&0===this.findHighlightableChoices().length&&r("<li class='select2-searching'>"+S(h.formatSearching,h.element)+"</li>"),u.addClass("select2-active"),this.removeHighlight(),s=this.tokenize(),s!=e&&null!=s&&u.val(s),this.resultsPage=1,h.query({element:h.element,term:u.val(),page:this.resultsPage,context:null,matcher:h.matcher,callback:this.bind(function(a){var s;if(l==this.queryCount){if(!this.opened())return void this.search.removeClass("select2-active");if(a.hasError!==e&&C(h.formatAjaxError,"formatAjaxError"))return void r("<li class='select2-ajax-error'>"+S(h.formatAjaxError,h.element,a.jqXHR,a.textStatus,a.errorThrown)+"</li>");if(this.context=a.context===e?null:a.context,this.opts.createSearchChoice&&""!==u.val()&&(s=this.opts.createSearchChoice.call(d,u.val(),a.results))!==e&&null!==s&&d.id(s)!==e&&null!==d.id(s)&&0===t(a.results).filter(function(){return o(d.id(this),d.id(s))}).length&&this.opts.createSearchChoicePosition(a.results,s),0===a.results.length&&C(h.formatNoMatches,"formatNoMatches"))return void r("<li class='select2-no-results'>"+S(h.formatNoMatches,h.element,u.val())+"</li>");c.empty(),d.opts.populateResults.call(this,c,a.results,{term:u.val(),page:this.resultsPage,context:null}),!0===a.more&&C(h.formatLoadMore,"formatLoadMore")&&(c.append("<li class='select2-more-results'>"+h.escapeMarkup(S(h.formatLoadMore,h.element,this.resultsPage))+"</li>"),window.setTimeout(function(){d.loadMoreIfNeeded()},10)),this.postprocessResults(a,i),n(),this.opts.element.trigger({type:"select2-loaded",items:a})}})})}},cancel:function(){this.close()},blur:function(){this.opts.selectOnBlur&&this.selectHighlighted({noFocus:!0}),this.close(),this.container.removeClass("select2-container-active"),this.search[0]===document.activeElement&&this.search.blur(),this.clearSearch(),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus")},focusSearch:function(){f(this.search)},selectHighlighted:function(t){if(this._touchMoved)return void this.clearTouchMoved();var e=this.highlight(),i=this.results.find(".select2-highlighted"),n=i.closest(".select2-result").data("select2-data");n?(this.highlight(e),this.onSelect(n,t)):t&&t.noFocus&&this.close()},getPlaceholder:function(){var t;return this.opts.element.attr("placeholder")||this.opts.element.attr("data-placeholder")||this.opts.element.data("placeholder")||this.opts.placeholder||((t=this.getPlaceholderOption())!==e?t.text():e)},getPlaceholderOption:function(){if(this.select){var i=this.select.children("option").first();if(this.opts.placeholderOption!==e)return"first"===this.opts.placeholderOption&&i||"function"==typeof this.opts.placeholderOption&&this.opts.placeholderOption(this.select);if(""===t.trim(i.text())&&""===i.val())return i}},initContainerWidth:function(){function i(){var i,n,r,a,o,s;if("off"===this.opts.width)return null;if("element"===this.opts.width)return 0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px";if("copy"===this.opts.width||"resolve"===this.opts.width){if((i=this.opts.element.attr("style"))!==e)for(n=i.split(";"),a=0,o=n.length;a<o;a+=1)if(s=n[a].replace(/\s/g,""),null!==(r=s.match(/^width:(([-+]?([0-9]*\.)?[0-9]+)(px|em|ex|%|in|cm|mm|pt|pc))/i))&&r.length>=1)return r[1];return"resolve"===this.opts.width?(i=this.opts.element.css("width"),i.indexOf("%")>0?i:0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px"):null}return t.isFunction(this.opts.width)?this.opts.width():this.opts.width}var n=i.call(this);null!==n&&this.container.css("width",n)}}),D=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container"}).html(["<a href='javascript:void(0)' class='select2-choice' tabindex='-1'>","   <span class='select2-chosen'>&#160;</span><abbr class='select2-search-choice-close'></abbr>","   <span class='select2-arrow' role='presentation'><b role='presentation'></b></span>","</a>","<label for='' class='select2-offscreen'></label>","<input class='select2-focusser select2-offscreen' type='text' aria-haspopup='true' role='button' />","<div class='select2-drop select2-display-none'>","   <div class='select2-search'>","       <label for='' class='select2-offscreen'></label>","       <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input' role='combobox' aria-expanded='true'","       aria-autocomplete='list' />","   </div>","   <ul class='select2-results' role='listbox'>","   </ul>","</div>"].join(""))},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.focusser.prop("disabled",!this.isInterfaceEnabled())},opening:function(){var i,n,r;this.opts.minimumResultsForSearch>=0&&this.showSearch(!0),this.parent.opening.apply(this,arguments),!1!==this.showSearchInput&&this.search.val(this.focusser.val()),this.opts.shouldFocusInput(this)&&(this.search.focus(),i=this.search.get(0),i.createTextRange?(n=i.createTextRange(),n.collapse(!1),n.select()):i.setSelectionRange&&(r=this.search.val().length,i.setSelectionRange(r,r))),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.focusser.prop("disabled",!0).val(""),this.updateResults(!0),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&(this.parent.close.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},focus:function(){this.opened()?this.close():(this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},isFocused:function(){return this.container.hasClass("select2-container-active")},cancel:function(){this.parent.cancel.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus()},destroy:function(){t("label[for='"+this.focusser.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),M.call(this,"selection","focusser")},initContainer:function(){var e,n,r=this.container,a=this.dropdown,o=R();this.opts.minimumResultsForSearch<0?this.showSearch(!1):this.showSearch(!0),this.selection=e=r.find(".select2-choice"),this.focusser=r.find(".select2-focusser"),e.find(".select2-chosen").attr("id","select2-chosen-"+o),this.focusser.attr("aria-labelledby","select2-chosen-"+o),this.results.attr("id","select2-results-"+o),this.search.attr("aria-owns","select2-results-"+o),this.focusser.attr("id","s2id_autogen"+o),n=t("label[for='"+this.opts.element.attr("id")+"']"),this.focusser.prev().text(n.text()).attr("for",this.focusser.attr("id"));var s=this.opts.element.attr("title");this.opts.element.attr("title",s||n.text()),this.focusser.attr("tabindex",this.elementTabIndex),this.search.attr("id",this.focusser.attr("id")+"_search"),this.search.prev().text(t("label[for='"+this.focusser.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&229!=t.keyCode){if(t.which===O.PAGE_UP||t.which===O.PAGE_DOWN)return void m(t);switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void m(t);case O.ENTER:return this.selectHighlighted(),void m(t);case O.TAB:return void this.selectHighlighted({noFocus:!0});case O.ESC:return this.cancel(t),void m(t)}}})),this.search.on("blur",this.bind(function(t){document.activeElement===this.body.get(0)&&window.setTimeout(this.bind(function(){this.opened()&&this.search.focus()}),0)})),this.focusser.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.ESC){if(!1===this.opts.openOnEnter&&t.which===O.ENTER)return void m(t);if(t.which==O.DOWN||t.which==O.UP||t.which==O.ENTER&&this.opts.openOnEnter){if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return;return this.open(),void m(t)}return t.which==O.DELETE||t.which==O.BACKSPACE?(this.opts.allowClear&&this.clear(),void m(t)):void 0}})),u(this.focusser),this.focusser.on("keyup-change input",this.bind(function(t){if(this.opts.minimumResultsForSearch>=0){if(t.stopPropagation(),this.opened())return;this.open()}})),e.on("mousedown touchstart","abbr",this.bind(function(t){this.isInterfaceEnabled()&&(this.clear(),v(t),this.close(),this.selection.focus())})),e.on("mousedown touchstart",this.bind(function(n){i(e),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.opened()?this.close():this.isInterfaceEnabled()&&this.open(),m(n)})),a.on("mousedown touchstart",this.bind(function(){this.opts.shouldFocusInput(this)&&this.search.focus()})),e.on("focus",this.bind(function(t){m(t)})),this.focusser.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})).on("blur",this.bind(function(){this.opened()||(this.container.removeClass("select2-container-active"),this.opts.element.trigger(t.Event("select2-blur")))})),this.search.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.setPlaceholder()},clear:function(e){var i=this.selection.data("select2-data");if(i){var n=t.Event("select2-clearing");if(this.opts.element.trigger(n),n.isDefaultPrevented())return;var r=this.getPlaceholderOption();this.opts.element.val(r?r.val():""),this.selection.find(".select2-chosen").empty(),this.selection.removeData("select2-data"),this.setPlaceholder(),!1!==e&&(this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}))}},initSelection:function(){if(this.isPlaceholderOptionSelected())this.updateSelection(null),this.close(),this.setPlaceholder();else{var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.setPlaceholder(),t.nextSearchTerm=t.opts.nextSearchTerm(i,t.search.val()))})}},isPlaceholderOptionSelected:function(){var t;return this.getPlaceholder()!==e&&((t=this.getPlaceholderOption())!==e&&t.prop("selected")||""===this.opts.element.val()||this.opts.element.val()===e||null===this.opts.element.val())},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=t.find("option").filter(function(){return this.selected&&!this.disabled});e(i.optionToData(n))}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=i.val(),a=null;e.query({matcher:function(t,i,n){var s=o(r,e.id(n));return s&&(a=n),s},callback:t.isFunction(n)?function(){n(a)}:t.noop})}),e},getPlaceholder:function(){return this.select&&this.getPlaceholderOption()===e?e:this.parent.getPlaceholder.apply(this,arguments)},setPlaceholder:function(){var t=this.getPlaceholder();if(this.isPlaceholderOptionSelected()&&t!==e){if(this.select&&this.getPlaceholderOption()===e)return;this.selection.find(".select2-chosen").html(this.opts.escapeMarkup(t)),this.selection.addClass("select2-default"),this.container.removeClass("select2-allowclear")}},postprocessResults:function(t,e,i){var n=0,r=this;if(this.findHighlightableChoices().each2(function(t,e){if(o(r.id(e.data("select2-data")),r.opts.element.val()))return n=t,!1}),!1!==i&&(!0===e&&n>=0?this.highlight(n):this.highlight(0)),!0===e){var a=this.opts.minimumResultsForSearch;a>=0&&this.showSearch(T(t.results)>=a)}},showSearch:function(e){this.showSearchInput!==e&&(this.showSearchInput=e,this.dropdown.find(".select2-search").toggleClass("select2-search-hidden",!e),this.dropdown.find(".select2-search").toggleClass("select2-offscreen",!e),t(this.dropdown,this.container).toggleClass("select2-with-searchbox",e))},onSelect:function(t,e){if(this.triggerSelect(t)){var i=this.opts.element.val(),n=this.data();this.opts.element.val(this.id(t)),this.updateSelection(t),this.opts.element.trigger({type:"select2-selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.close(),e&&e.noFocus||!this.opts.shouldFocusInput(this)||this.focusser.focus(),o(i,this.id(t))||this.triggerChange({added:t,removed:n})}},updateSelection:function(t){var i,n,r=this.selection.find(".select2-chosen");this.selection.data("select2-data",t),r.empty(),null!==t&&(i=this.opts.formatSelection(t,r,this.opts.escapeMarkup)),i!==e&&r.append(i),n=this.opts.formatSelectionCssClass(t,r),n!==e&&r.addClass(n),this.selection.removeClass("select2-default"),this.opts.allowClear&&this.getPlaceholder()!==e&&this.container.addClass("select2-allowclear")},val:function(){var t,i=!1,n=null,r=this,a=this.data();if(0===arguments.length)return this.opts.element.val();if(t=arguments[0],arguments.length>1&&(i=arguments[1]),this.select)this.select.val(t).find("option").filter(function(){return this.selected}).each2(function(t,e){return n=r.optionToData(e),!1}),this.updateSelection(n),this.setPlaceholder(),i&&this.triggerChange({added:n,removed:a});else{if(!t&&0!==t)return void this.clear(i);if(this.opts.initSelection===e)throw new Error("cannot call val() if initSelection() is not defined");this.opts.element.val(t),this.opts.initSelection(this.opts.element,function(t){r.opts.element.val(t?r.id(t):""),r.updateSelection(t),r.setPlaceholder(),i&&r.triggerChange({added:t,removed:a})})}},clearSearch:function(){this.search.val(""),this.focusser.val("")},data:function(t){var i,n=!1;if(0===arguments.length)return i=this.selection.data("select2-data"),i==e&&(i=null),i;arguments.length>1&&(n=arguments[1]),t?(i=this.data(),this.opts.element.val(t?this.id(t):""),this.updateSelection(t),n&&this.triggerChange({added:t,removed:i})):this.clear(n)}}),j=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container select2-container-multi"}).html(["<ul class='select2-choices'>","  <li class='select2-search-field'>","    <label for='' class='select2-offscreen'></label>","    <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input'>","  </li>","</ul>","<div class='select2-drop select2-drop-multi select2-display-none'>","   <ul class='select2-results'>","   </ul>","</div>"].join(""))},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=[];t.find("option").filter(function(){return this.selected&&!this.disabled}).each2(function(t,e){n.push(i.optionToData(e))}),e(n)}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=s(i.val(),e.separator),a=[];e.query({matcher:function(i,n,s){var l=t.grep(r,function(t){return o(t,e.id(s))}).length;return l&&a.push(s),l},callback:t.isFunction(n)?function(){for(var t=[],i=0;i<r.length;i++)for(var s=r[i],l=0;l<a.length;l++){var u=a[l];if(o(s,e.id(u))){t.push(u),a.splice(l,1);break}}n(t)}:t.noop})}),e},selectChoice:function(t){var e=this.container.find(".select2-search-choice-focus");e.length&&t&&t[0]==e[0]||(e.length&&this.opts.element.trigger("choice-deselected",e),e.removeClass("select2-search-choice-focus"),t&&t.length&&(this.close(),t.addClass("select2-search-choice-focus"),this.opts.element.trigger("choice-selected",t)))},destroy:function(){t("label[for='"+this.search.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),M.call(this,"searchContainer","selection")},initContainer:function(){var e,i=".select2-choices";this.searchContainer=this.container.find(".select2-search-field"),this.selection=e=this.container.find(i);var n=this;this.selection.on("click",".select2-search-choice:not(.select2-locked)",function(e){n.search[0].focus(),n.selectChoice(t(this))}),this.search.attr("id","s2id_autogen"+R()),this.search.prev().text(t("label[for='"+this.opts.element.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("input paste",this.bind(function(){this.search.attr("placeholder")&&0==this.search.val().length||this.isInterfaceEnabled()&&(this.opened()||this.open())})),this.search.attr("tabindex",this.elementTabIndex),this.keydowns=0,this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()){++this.keydowns;var i=e.find(".select2-search-choice-focus"),n=i.prev(".select2-search-choice:not(.select2-locked)"),r=i.next(".select2-search-choice:not(.select2-locked)"),a=p(this.search);if(i.length&&(t.which==O.LEFT||t.which==O.RIGHT||t.which==O.BACKSPACE||t.which==O.DELETE||t.which==O.ENTER)){var o=i;return t.which==O.LEFT&&n.length?o=n:t.which==O.RIGHT?o=r.length?r:null:t.which===O.BACKSPACE?this.unselect(i.first())&&(this.search.width(10),o=n.length?n:r):t.which==O.DELETE?this.unselect(i.first())&&(this.search.width(10),o=r.length?r:null):t.which==O.ENTER&&(o=null),this.selectChoice(o),m(t),void(o&&o.length||this.open())}if((t.which===O.BACKSPACE&&1==this.keydowns||t.which==O.LEFT)&&0==a.offset&&!a.length)return this.selectChoice(e.find(".select2-search-choice:not(.select2-locked)").last()),void m(t);if(this.selectChoice(null),this.opened())switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void m(t);case O.ENTER:return this.selectHighlighted(),void m(t);case O.TAB:return this.selectHighlighted({noFocus:!0}),void this.close();case O.ESC:return this.cancel(t),void m(t)}if(t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.BACKSPACE&&t.which!==O.ESC){if(t.which===O.ENTER){if(!1===this.opts.openOnEnter)return;if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return}this.open(),t.which!==O.PAGE_UP&&t.which!==O.PAGE_DOWN||m(t),t.which===O.ENTER&&m(t)}}})),this.search.on("keyup",this.bind(function(t){this.keydowns=0,this.resizeSearch()})),this.search.on("blur",this.bind(function(e){this.container.removeClass("select2-container-active"),this.search.removeClass("select2-focused"),this.selectChoice(null),this.opened()||this.clearSearch(),e.stopImmediatePropagation(),this.opts.element.trigger(t.Event("select2-blur"))})),this.container.on("click",i,this.bind(function(e){this.isInterfaceEnabled()&&(t(e.target).closest(".select2-search-choice").length>0||(this.selectChoice(null),this.clearPlaceholder(),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.open(),this.focusSearch(),e.preventDefault()))})),this.container.on("focus",i,this.bind(function(){this.isInterfaceEnabled()&&(this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"),this.clearPlaceholder())})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.clearSearch()},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.search.prop("disabled",!this.isInterfaceEnabled())},initSelection:function(){if(""===this.opts.element.val()&&""===this.opts.element.text()&&(this.updateSelection([]),this.close(),this.clearSearch()),this.select||""!==this.opts.element.val()){var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.clearSearch())})}},clearSearch:function(){var t=this.getPlaceholder(),i=this.getMaxSearchWidth();t!==e&&0===this.getVal().length&&!1===this.search.hasClass("select2-focused")?(this.search.val(t).addClass("select2-default"),this.search.width(i>0?i:this.container.css("width"))):this.search.val("").width(10)},clearPlaceholder:function(){this.search.hasClass("select2-default")&&this.search.val("").removeClass("select2-default")},opening:function(){this.clearPlaceholder(),this.resizeSearch(),this.parent.opening.apply(this,arguments),this.focusSearch(),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.updateResults(!0),this.opts.shouldFocusInput(this)&&this.search.focus(),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&this.parent.close.apply(this,arguments)},focus:function(){this.close(),this.search.focus()},isFocused:function(){return this.search.hasClass("select2-focused")},updateSelection:function(e){var i=[],n=[],a=this;t(e).each(function(){r(a.id(this),i)<0&&(i.push(a.id(this)),n.push(this))}),e=n,this.selection.find(".select2-search-choice").remove(),t(e).each(function(){a.addSelectedChoice(this)}),a.postprocessResults()},tokenize:function(){var t=this.search.val();null!=(t=this.opts.tokenizer.call(this,t,this.data(),this.bind(this.onSelect),this.opts))&&t!=e&&(this.search.val(t),t.length>0&&this.open())},onSelect:function(t,i){this.triggerSelect(t)&&""!==t.text&&(this.addSelectedChoice(t),this.opts.element.trigger({type:"selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.moveHighlight(1),!this.select&&this.opts.closeOnSelect||this.postprocessResults(t,!1,!0===this.opts.closeOnSelect),this.opts.closeOnSelect?(this.clearSearch(),this.updateResults(),this.close(),this.search.width(10)):this.countSelectableResults()>0?(this.search.width(10),this.resizeSearch(),this.getMaximumSelectionSize()>0&&this.val().length>=this.getMaximumSelectionSize()?this.updateResults(!0):this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.updateResults(),this.search.select()),this.positionDropdown()):(this.close(),this.search.width(10)),this.triggerChange({added:t}),i&&i.noFocus||this.focusSearch())},cancel:function(){this.close(),this.focusSearch()},addSelectedChoice:function(i){var n,r,a=!i.locked,o=t("<li class='select2-search-choice'>    <div></div>    <a href='#' class='select2-search-choice-close' tabindex='-1'></a></li>"),s=t("<li class='select2-search-choice select2-locked'><div></div></li>"),l=a?o:s,u=this.id(i),c=this.getVal();n=this.opts.formatSelection(i,l.find("div"),this.opts.escapeMarkup),n!=e&&l.find("div").replaceWith("<div>"+n+"</div>"),r=this.opts.formatSelectionCssClass(i,l.find("div")),r!=e&&l.addClass(r),a&&l.find(".select2-search-choice-close").on("mousedown",m).on("click dblclick",this.bind(function(e){this.isInterfaceEnabled()&&(this.unselect(t(e.target)),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus"),m(e),this.close(),this.focusSearch())})).on("focus",this.bind(function(){this.isInterfaceEnabled()&&(this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"))})),l.data("select2-data",i),l.insertBefore(this.searchContainer),c.push(u),this.setVal(c)},unselect:function(e){var i,n,a=this.getVal();if(e=e.closest(".select2-search-choice"),0===e.length)throw"Invalid argument: "+e+". Must be .select2-search-choice";if(i=e.data("select2-data")){var o=t.Event("select2-removing");if(o.val=this.id(i),o.choice=i,this.opts.element.trigger(o),o.isDefaultPrevented())return!1;for(;(n=r(this.id(i),a))>=0;)a.splice(n,1),this.setVal(a),this.select&&this.postprocessResults();return e.remove(),this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}),!0}},postprocessResults:function(t,e,i){var n=this.getVal(),a=this.results.find(".select2-result"),o=this.results.find(".select2-result-with-children"),s=this;a.each2(function(t,e){r(s.id(e.data("select2-data")),n)>=0&&(e.addClass("select2-selected"),e.find(".select2-result-selectable").addClass("select2-selected"))}),o.each2(function(t,e){e.is(".select2-result-selectable")||0!==e.find(".select2-result-selectable:not(.select2-selected)").length||e.addClass("select2-selected")}),-1==this.highlight()&&!1!==i&&s.highlight(0),!this.opts.createSearchChoice&&!a.filter(".select2-result:not(.select2-selected)").length>0&&(!t||t&&!t.more&&0===this.results.find(".select2-no-results").length)&&C(s.opts.formatNoMatches,"formatNoMatches")&&this.results.append("<li class='select2-no-results'>"+S(s.opts.formatNoMatches,s.opts.element,s.search.val())+"</li>")},getMaxSearchWidth:function(){return this.selection.width()-l(this.search)},resizeSearch:function(){var t,e,i,n,r,a=l(this.search);t=g(this.search)+10,e=this.search.offset().left,i=this.selection.width(),n=this.selection.offset().left,r=i-(e-n)-a,r<t&&(r=i-a),r<40&&(r=i-a),r<=0&&(r=t),this.search.width(Math.floor(r))},getVal:function(){var t;return this.select?(t=this.select.val(),null===t?[]:t):(t=this.opts.element.val(),s(t,this.opts.separator))},setVal:function(e){var i;this.select?this.select.val(e):(i=[],t(e).each(function(){r(this,i)<0&&i.push(this)}),this.opts.element.val(0===i.length?"":i.join(this.opts.separator)))},buildChangeDetails:function(t,e){for(var e=e.slice(0),t=t.slice(0),i=0;i<e.length;i++)for(var n=0;n<t.length;n++)o(this.opts.id(e[i]),this.opts.id(t[n]))&&(e.splice(i,1),i>0&&i--,t.splice(n,1),n--);return{added:e,removed:t}},val:function(i,n){var r,a=this;if(0===arguments.length)return this.getVal();if(r=this.data(),r.length||(r=[]),!i&&0!==i)return this.opts.element.val(""),this.updateSelection([]),this.clearSearch(),void(n&&this.triggerChange({added:this.data(),removed:r}));if(this.setVal(i),this.select)this.opts.initSelection(this.select,this.bind(this.updateSelection)),n&&this.triggerChange(this.buildChangeDetails(r,this.data()));else{if(this.opts.initSelection===e)throw new Error("val() cannot be called if initSelection() is not defined");this.opts.initSelection(this.opts.element,function(e){var i=t.map(e,a.id);a.setVal(i),a.updateSelection(e),a.clearSearch(),n&&a.triggerChange(a.buildChangeDetails(r,a.data()))})}this.clearSearch()},onSortStart:function(){if(this.select)throw new Error("Sorting of elements is not supported when attached to <select>. Attach to <input type='hidden'/> instead.");this.search.width(0),this.searchContainer.hide()},onSortEnd:function(){var e=[],i=this;this.searchContainer.show(),this.searchContainer.appendTo(this.searchContainer.parent()),this.resizeSearch(),this.selection.find(".select2-search-choice").each(function(){e.push(i.opts.id(t(this).data("select2-data")))}),this.setVal(e),this.triggerChange()},data:function(e,i){var n,r,a=this;if(0===arguments.length)return this.selection.children(".select2-search-choice").map(function(){return t(this).data("select2-data")}).get();r=this.data(),e||(e=[]),n=t.map(e,function(t){return a.opts.id(t)}),this.setVal(n),this.updateSelection(e),this.clearSearch(),i&&this.triggerChange(this.buildChangeDetails(r,this.data()))}}),t.fn.select2=function(){var i,n,a,o,s,l=Array.prototype.slice.call(arguments,0),u=["val","destroy","opened","open","close","focus","isFocused","container","dropdown","onSortStart","onSortEnd","enable","disable","readonly","positionDropdown","data","search"],c=["opened","isFocused","container","dropdown"],h=["val","data"],d={search:"externalSearch"};return this.each(function(){if(0===l.length||"object"==typeof l[0])i=0===l.length?{}:t.extend({},l[0]),i.element=t(this),"select"===i.element.get(0).tagName.toLowerCase()?s=i.element.prop("multiple"):(s=i.multiple||!1,"tags"in i&&(i.multiple=s=!0)),n=s?new window.Select2.class.multi:new window.Select2.class.single,n.init(i);else{if("string"!=typeof l[0])throw"Invalid arguments to select2 plugin: "+l;if(r(l[0],u)<0)throw"Unknown method: "+l[0];if(o=e,(n=t(this).data("select2"))===e)return;if(a=l[0],"container"===a?o=n.container:"dropdown"===a?o=n.dropdown:(d[a]&&(a=d[a]),o=n[a].apply(n,l.slice(1))),r(l[0],c)>=0||r(l[0],h)>=0&&1==l.length)return!1}}),o===e?this:o},t.fn.select2.defaults={width:"copy",loadMorePadding:0,closeOnSelect:!0,openOnEnter:!0,containerCss:{},dropdownCss:{},containerCssClass:"",dropdownCssClass:"",formatResult:function(t,e,i,n){var r=[];return y(t.text,i.term,r,n),r.join("")},formatSelection:function(t,i,n){return t?n(t.text):e},sortResults:function(t,e,i){return t},formatResultCssClass:function(t){return t.css},formatSelectionCssClass:function(t,i){return e},minimumResultsForSearch:0,minimumInputLength:0,maximumInputLength:null,maximumSelectionSize:0,id:function(t){return t==e?null:t.id},matcher:function(t,e){return n(""+e).toUpperCase().indexOf(n(""+t).toUpperCase())>=0},separator:",",tokenSeparators:[],tokenizer:A,escapeMarkup:b,blurOnChange:!1,selectOnBlur:!1,adaptContainerCssClass:function(t){return t},adaptDropdownCssClass:function(t){return null},nextSearchTerm:function(t,i){return e},searchInputPlaceholder:"",createSearchChoicePosition:"top",shouldFocusInput:function(t){return!(("ontouchstart"in window||navigator.msMaxTouchPoints>0)&&t.opts.minimumResultsForSearch<0)}},t.fn.select2.locales=[],t.fn.select2.locales.en={formatMatches:function(t){return 1===t?"One result is available, press enter to select it.":t+" results are available, use up and down arrow keys to navigate."},formatNoMatches:function(){return"No matches found"},formatAjaxError:function(t,e,i){return"Loading failed"},formatInputTooShort:function(t,e){var i=e-t.length;return"Please enter "+i+" or more character"+(1==i?"":"s")},formatInputTooLong:function(t,e){var i=t.length-e;return"Please delete "+i+" character"+(1==i?"":"s")},formatSelectionTooBig:function(t){return"You can only select "+t+" item"+(1==t?"":"s")},formatLoadMore:function(t){return"Loading more results…"},formatSearching:function(){return"Searching…"}},t.extend(t.fn.select2.defaults,t.fn.select2.locales.en),t.fn.select2.ajaxDefaults={transport:t.ajax,params:{type:"GET",cache:!1,dataType:"json"}},window.Select2={query:{ajax:w,local:x,tags:k},util:{debounce:h,markMatch:y,escapeMarkup:b,stripDiacritics:n},class:{abstract:$,single:D,multi:j}}}}(t)}).call(e,i(0))},function(t,e,i){(function(t){!function(t,e){var i,n;n=e.document,i=function(){function i(i){var n;try{n=e.localStorage}catch(t){n=!1}this._options=t.extend({name:"tour",steps:[],container:"body",autoscroll:!0,keyboard:!0,storage:n,debug:!1,backdrop:!1,backdropContainer:"body",backdropPadding:0,redirect:!0,orphan:!1,duration:!1,delay:!1,basePath:"",template:'<div class="popover" role="tooltip"> <div class="arrow"></div> <h3 class="popover-title"></h3> <div class="popover-content"></div> <div class="popover-navigation"> <div class="btn-group"> <button class="btn btn-sm btn-default" data-role="prev">&laquo; Prev</button> <button class="btn btn-sm btn-default" data-role="next">Next &raquo;</button> <button class="btn btn-sm btn-default" data-role="pause-resume" data-pause-text="Pause" data-resume-text="Resume">Pause</button> </div> <button class="btn btn-sm btn-default" data-role="end">End tour</button> </div> </div>',afterSetState:function(t,e){},afterGetState:function(t,e){},afterRemoveState:function(t){},onStart:function(t){},onEnd:function(t){},onShow:function(t){},onShown:function(t){},onHide:function(t){},onHidden:function(t){},onNext:function(t){},onPrev:function(t){},onPause:function(t,e){},onResume:function(t,e){},onRedirectError:function(t){}},i),this._force=!1,this._inited=!1,this._current=null,this.backdrop={overlay:null,$element:null,$background:null,backgroundShown:!1,overlayElementShown:!1}}return i.prototype.addSteps=function(t){var e,i,n;for(i=0,n=t.length;i<n;i++)e=t[i],this.addStep(e);return this},i.prototype.addStep=function(t){return this._options.steps.push(t),this},i.prototype.getStep=function(e){if(null!=this._options.steps[e])return t.extend({id:"step-"+e,path:"",host:"",placement:"right",title:"",content:"<p></p>",next:e===this._options.steps.length-1?-1:e+1,prev:e-1,animation:!0,container:this._options.container,autoscroll:this._options.autoscroll,backdrop:this._options.backdrop,backdropContainer:this._options.backdropContainer,backdropPadding:this._options.backdropPadding,redirect:this._options.redirect,reflexElement:this._options.steps[e].element,orphan:this._options.orphan,duration:this._options.duration,delay:this._options.delay,template:this._options.template,onShow:this._options.onShow,onShown:this._options.onShown,onHide:this._options.onHide,onHidden:this._options.onHidden,onNext:this._options.onNext,onPrev:this._options.onPrev,onPause:this._options.onPause,onResume:this._options.onResume,onRedirectError:this._options.onRedirectError},this._options.steps[e])},i.prototype.init=function(t){return this._force=t,this.ended()?(this._debug("Tour ended, init prevented."),this):(this.setCurrentStep(),this._initMouseNavigation(),this._initKeyboardNavigation(),this._onResize(function(t){return function(){return t.showStep(t._current)}}(this)),null!==this._current&&this.showStep(this._current),this._inited=!0,this)},i.prototype.start=function(t){var e;return null==t&&(t=!1),this._inited||this.init(t),null===this._current&&(e=this._makePromise(null!=this._options.onStart?this._options.onStart(this):void 0),this._callOnPromiseDone(e,this.showStep,0)),this},i.prototype.next=function(){var t;return t=this.hideStep(this._current),this._callOnPromiseDone(t,this._showNextStep)},i.prototype.prev=function(){var t;return t=this.hideStep(this._current),this._callOnPromiseDone(t,this._showPrevStep)},i.prototype.goTo=function(t){var e;return e=this.hideStep(this._current),this._callOnPromiseDone(e,this.showStep,t)},i.prototype.end=function(){var i,r;return i=function(i){return function(r){if(t(n).off("click.tour-"+i._options.name),t(n).off("keyup.tour-"+i._options.name),t(e).off("resize.tour-"+i._options.name),i._setState("end","yes"),i._inited=!1,i._force=!1,i._clearTimer(),null!=i._options.onEnd)return i._options.onEnd(i)}}(this),r=this.hideStep(this._current),this._callOnPromiseDone(r,i)},i.prototype.ended=function(){return!this._force&&!!this._getState("end")},i.prototype.restart=function(){return this._removeState("current_step"),this._removeState("end"),this._removeState("redirect_to"),this.start()},i.prototype.pause=function(){var t;return(t=this.getStep(this._current))&&t.duration?(this._paused=!0,this._duration-=(new Date).getTime()-this._start,e.clearTimeout(this._timer),this._debug("Paused/Stopped step "+(this._current+1)+" timer ("+this._duration+" remaining)."),null!=t.onPause?t.onPause(this,this._duration):void 0):this},i.prototype.resume=function(){var t;return(t=this.getStep(this._current))&&t.duration?(this._paused=!1,this._start=(new Date).getTime(),this._duration=this._duration||t.duration,this._timer=e.setTimeout(function(t){return function(){return t._isLast()?t.next():t.end()}}(this),this._duration),this._debug("Started step "+(this._current+1)+" timer with duration "+this._duration),null!=t.onResume&&this._duration!==t.duration?t.onResume(this,this._duration):void 0):this},i.prototype.hideStep=function(e){var i,n,r;if(r=this.getStep(e))return this._clearTimer(),n=this._makePromise(null!=r.onHide?r.onHide(this,e):void 0),i=function(i){return function(n){var a;if(a=t(r.element),a.data("bs.popover")||a.data("popover")||(a=t("body")),a.popover("destroy").removeClass("tour-"+i._options.name+"-element tour-"+i._options.name+"-"+e+"-element"),a.removeData("bs.popover"),r.reflex&&t(r.reflexElement).removeClass("tour-step-element-reflex").off(i._reflexEvent(r.reflex)+".tour-"+i._options.name),r.backdrop&&i._hideBackdrop(),null!=r.onHidden)return r.onHidden(i)}}(this),this._callOnPromiseDone(n,i),n},i.prototype.showStep=function(t){var i,r,a,o;return this.ended()?(this._debug("Tour ended, showStep prevented."),this):(o=this.getStep(t))?(a=t<this._current,i=this._makePromise(null!=o.onShow?o.onShow(this,t):void 0),r=function(e){return function(i){var r,s;if(e.setCurrentStep(t),r=function(){switch({}.toString.call(o.path)){case"[object Function]":return o.path();case"[object String]":return this._options.basePath+o.path;default:return o.path}}.call(e),!e._isRedirect(o.host,r,n.location)||(e._redirect(o,t,r),e._isJustPathHashDifferent(o.host,r,n.location))){if(e._isOrphan(o)){if(!1===o.orphan)return e._debug("Skip the orphan step "+(e._current+1)+".\nOrphan option is false and the element does not exist or is hidden."),void(a?e._showPrevStep():e._showNextStep());e._debug("Show the orphan step "+(e._current+1)+". Orphans option is true.")}return o.backdrop&&e._showBackdrop(o),s=function(){if(e.getCurrentStep()===t&&!e.ended())return null!=o.element&&o.backdrop&&e._showOverlayElement(o),e._showPopover(o,t),null!=o.onShown&&o.onShown(e),e._debug("Step "+(e._current+1)+" of "+e._options.steps.length)},o.autoscroll?e._scrollIntoView(o.element,s):s(),o.duration?e.resume():void 0}}}(this),o.delay?(this._debug("Wait "+o.delay+" milliseconds to show the step "+(this._current+1)),e.setTimeout(function(t){return function(){return t._callOnPromiseDone(i,r)}}(this),o.delay)):this._callOnPromiseDone(i,r),i):void 0},i.prototype.getCurrentStep=function(){return this._current},i.prototype.setCurrentStep=function(t){return null!=t?(this._current=t,this._setState("current_step",t)):(this._current=this._getState("current_step"),this._current=null===this._current?null:parseInt(this._current,10)),this},i.prototype.redraw=function(){return this._showOverlayElement(this.getStep(this.getCurrentStep()).element,!0)},i.prototype._setState=function(t,e){var i,n;if(this._options.storage){n=this._options.name+"_"+t;try{this._options.storage.setItem(n,e)}catch(t){i=t,i.code===DOMException.QUOTA_EXCEEDED_ERR&&this._debug("LocalStorage quota exceeded. State storage failed.")}return this._options.afterSetState(n,e)}return null==this._state&&(this._state={}),this._state[t]=e},i.prototype._removeState=function(t){var e;return this._options.storage?(e=this._options.name+"_"+t,this._options.storage.removeItem(e),this._options.afterRemoveState(e)):null!=this._state?delete this._state[t]:void 0},i.prototype._getState=function(t){var e,i;return this._options.storage?(e=this._options.name+"_"+t,i=this._options.storage.getItem(e)):null!=this._state&&(i=this._state[t]),void 0!==i&&"null"!==i||(i=null),this._options.afterGetState(t,i),i},i.prototype._showNextStep=function(){var t,e,i;return i=this.getStep(this._current),e=function(t){return function(e){return t.showStep(i.next)}}(this),t=this._makePromise(null!=i.onNext?i.onNext(this):void 0),this._callOnPromiseDone(t,e)},i.prototype._showPrevStep=function(){var t,e,i;return i=this.getStep(this._current),e=function(t){return function(e){return t.showStep(i.prev)}}(this),t=this._makePromise(null!=i.onPrev?i.onPrev(this):void 0),this._callOnPromiseDone(t,e)},i.prototype._debug=function(t){if(this._options.debug)return e.console.log("Bootstrap Tour '"+this._options.name+"' | "+t)},i.prototype._isRedirect=function(t,e,i){var n;return!(""===t||!this._isHostDifferent(t,i.href))||(n=[i.pathname,i.search,i.hash].join(""),null!=e&&""!==e&&("[object RegExp]"==={}.toString.call(e)&&!e.test(n)||"[object String]"==={}.toString.call(e)&&this._isPathDifferent(e,n)))},i.prototype._isHostDifferent=function(t,e){return this._getProtocol(t)!==this._getProtocol(e)||this._getHost(t)!==this._getHost(e)},i.prototype._isPathDifferent=function(t,e){return this._getPath(t)!==this._getPath(e)||!this._equal(this._getQuery(t),this._getQuery(e))||!this._equal(this._getHash(t),this._getHash(e))},i.prototype._isJustPathHashDifferent=function(t,e,i){var n;return(""===t||!this._isHostDifferent(t,i.href))&&(n=[i.pathname,i.search,i.hash].join(""),"[object String]"==={}.toString.call(e)&&(this._getPath(e)===this._getPath(n)&&this._equal(this._getQuery(e),this._getQuery(n))&&!this._equal(this._getHash(e),this._getHash(n))))},i.prototype._redirect=function(e,i,r){if(t.isFunction(e.redirect))return e.redirect.call(this,r);if(!0===e.redirect){if(this._debug("Redirect to "+e.host+r),this._getState("redirect_to")!==""+i)return this._setState("redirect_to",""+i),n.location.href=""+e.host+r;if(this._debug("Error redirection loop to "+r),this._removeState("redirect_to"),null!=e.onRedirectError)return e.onRedirectError(this)}},i.prototype._isOrphan=function(e){return null==e.element||!t(e.element).length||t(e.element).is(":hidden")&&"http://www.w3.org/2000/svg"!==t(e.element)[0].namespaceURI},i.prototype._isLast=function(){return this._current<this._options.steps.length-1},i.prototype._showPopover=function(e,i){var n,r,a,o,s;if(t(".tour-"+this._options.name).remove(),o=t.extend({},this._options),a=this._isOrphan(e),e.template=this._template(e,i),a&&(e.element="body",e.placement="top"),n=t(e.element),n.addClass("tour-"+this._options.name+"-element tour-"+this._options.name+"-"+i+"-element"),e.options&&t.extend(o,e.options),e.reflex&&!a&&t(e.reflexElement).addClass("tour-step-element-reflex").off(this._reflexEvent(e.reflex)+".tour-"+this._options.name).on(this._reflexEvent(e.reflex)+".tour-"+this._options.name,function(t){return function(){return t._isLast()?t.next():t.end()}}(this)),s=!0===e.smartPlacement&&-1===e.placement.search(/auto/i),n.popover({placement:s?"auto "+e.placement:e.placement,trigger:"manual",title:e.title,content:e.content,html:!0,animation:e.animation,container:e.container,template:e.template,selector:e.element}).popover("show"),r=n.data("bs.popover")?n.data("bs.popover").tip():n.data("popover").tip(),r.attr("id",e.id),this._reposition(r,e),a)return this._center(r)},i.prototype._template=function(e,i){var n,r,a,o,s,l;return l=e.template,this._isOrphan(e)&&"[object Boolean]"!=={}.toString.call(e.orphan)&&(l=e.orphan),s=t(t.isFunction(l)?l(i,e):l),n=s.find(".popover-navigation"),a=n.find('[data-role="prev"]'),r=n.find('[data-role="next"]'),o=n.find('[data-role="pause-resume"]'),this._isOrphan(e)&&s.addClass("orphan"),s.addClass("tour-"+this._options.name+" tour-"+this._options.name+"-"+i),e.reflex&&s.addClass("tour-"+this._options.name+"-reflex"),e.prev<0&&(a.addClass("disabled"),a.prop("disabled",!0)),e.next<0&&(r.addClass("disabled"),r.prop("disabled",!0)),e.duration||o.remove(),s.clone().wrap("<div>").parent().html()},i.prototype._reflexEvent=function(t){return"[object Boolean]"==={}.toString.call(t)?"click":t},i.prototype._reposition=function(e,i){var r,a,o,s,l,u,c;if(s=e[0].offsetWidth,a=e[0].offsetHeight,c=e.offset(),l=c.left,u=c.top,r=t(n).outerHeight()-c.top-e.outerHeight(),r<0&&(c.top=c.top+r),o=t("html").outerWidth()-c.left-e.outerWidth(),o<0&&(c.left=c.left+o),c.top<0&&(c.top=0),c.left<0&&(c.left=0),e.offset(c),"bottom"===i.placement||"top"===i.placement){if(l!==c.left)return this._replaceArrow(e,2*(c.left-l),s,"left")}else if(u!==c.top)return this._replaceArrow(e,2*(c.top-u),a,"top")},i.prototype._center=function(i){return i.css("top",t(e).outerHeight()/2-i.outerHeight()/2)},i.prototype._replaceArrow=function(t,e,i,n){return t.find(".arrow").css(n,e?50*(1-e/i)+"%":"")},i.prototype._scrollIntoView=function(i,n){var r,a,o,s,l,u;return r=t(i),r.length?(a=t(e),s=r.offset().top,u=a.height(),l=Math.max(0,s-u/2),this._debug("Scroll into view. ScrollTop: "+l+". Element offset: "+s+". Window height: "+u+"."),o=0,t("body, html").stop(!0,!0).animate({scrollTop:Math.ceil(l)},function(t){return function(){if(2==++o)return n(),t._debug("Scroll into view.\nAnimation end element offset: "+r.offset().top+".\nWindow height: "+a.height()+".")}}(this))):n()},i.prototype._onResize=function(i,n){return t(e).on("resize.tour-"+this._options.name,function(){return clearTimeout(n),n=setTimeout(i,100)})},i.prototype._initMouseNavigation=function(){var e;return e=this,t(n).off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='prev']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='next']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='end']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='pause-resume']").on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='next']",function(t){return function(e){return e.preventDefault(),t.next()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='prev']",function(t){return function(e){return e.preventDefault(),t.prev()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='end']",function(t){return function(e){return e.preventDefault(),t.end()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='pause-resume']",function(i){var n;return i.preventDefault(),n=t(this),n.text(e._paused?n.data("pause-text"):n.data("resume-text")),e._paused?e.resume():e.pause()})},i.prototype._initKeyboardNavigation=function(){if(this._options.keyboard)return t(n).on("keyup.tour-"+this._options.name,function(t){return function(e){if(e.which)switch(e.which){case 39:return e.preventDefault(),t._isLast()?t.next():t.end();case 37:if(e.preventDefault(),t._current>0)return t.prev();break;case 27:return e.preventDefault(),t.end()}}}(this))},i.prototype._makePromise=function(e){return e&&t.isFunction(e.then)?e:null},i.prototype._callOnPromiseDone=function(t,e,i){return t?t.then(function(t){return function(n){return e.call(t,i)}}(this)):e.call(this,i)},i.prototype._showBackdrop=function(e){if(!this.backdrop.backgroundShown)return this.backdrop=t("<div>",{class:"tour-backdrop"}),this.backdrop.backgroundShown=!0,t(e.backdropContainer).append(this.backdrop)},i.prototype._hideBackdrop=function(){return this._hideOverlayElement(),this._hideBackground()},i.prototype._hideBackground=function(){if(this.backdrop)return this.backdrop.remove(),this.backdrop.overlay=null,this.backdrop.backgroundShown=!1},i.prototype._showOverlayElement=function(e,i){var n,r;if((n=t(e.element))&&0!==n.length&&(!this.backdrop.overlayElementShown||i))return this.backdrop.overlayElementShown||(this.backdrop.$element=n.addClass("tour-step-backdrop"),this.backdrop.$background=t("<div>",{class:"tour-step-background"}),this.backdrop.$background.appendTo(e.backdropContainer),this.backdrop.overlayElementShown=!0),r={width:n.innerWidth(),height:n.innerHeight(),offset:n.offset()},e.backdropPadding&&(r=this._applyBackdropPadding(e.backdropPadding,r)),this.backdrop.$background.width(r.width).height(r.height).offset(r.offset)},i.prototype._hideOverlayElement=function(){if(this.backdrop.overlayElementShown)return this.backdrop.$element.removeClass("tour-step-backdrop"),this.backdrop.$background.remove(),this.backdrop.$element=null,this.backdrop.$background=null,this.backdrop.overlayElementShown=!1},i.prototype._applyBackdropPadding=function(t,e){return"object"==typeof t?(null==t.top&&(t.top=0),null==t.right&&(t.right=0),null==t.bottom&&(t.bottom=0),null==t.left&&(t.left=0),e.offset.top=e.offset.top-t.top,e.offset.left=e.offset.left-t.left,e.width=e.width+t.left+t.right,e.height=e.height+t.top+t.bottom):(e.offset.top=e.offset.top-t,e.offset.left=e.offset.left-t,e.width=e.width+2*t,e.height=e.height+2*t),e},i.prototype._clearTimer=function(){return e.clearTimeout(this._timer),this._timer=null,this._duration=null},i.prototype._getProtocol=function(t){return t=t.split("://"),t.length>1?t[0]:"http"},i.prototype._getHost=function(t){return t=t.split("//"),t=t.length>1?t[1]:t[0],t.split("/")[0]},i.prototype._getPath=function(t){return t.replace(/\/?$/,"").split("?")[0].split("#")[0]},i.prototype._getQuery=function(t){return this._getParams(t,"?")},i.prototype._getHash=function(t){return this._getParams(t,"#")},i.prototype._getParams=function(t,e){var i,n,r,a,o;if(n=t.split(e),1===n.length)return{};for(n=n[1].split("&"),r={},a=0,o=n.length;a<o;a++)i=n[a],i=i.split("="),r[i[0]]=i[1]||"";return r},i.prototype._equal=function(t,e){var i,n;if("[object Object]"==={}.toString.call(t)&&"[object Object]"==={}.toString.call(e)){for(i in t)if(n=t[i],e[i]!==n)return!1;for(i in e)if(n=e[i],t[i]!==n)return!1;return!0}return t===e},i}(),e.Tour=i}(t,window)}).call(e,i(0))},function(t,e){var i;i=function(){return this}();try{i=i||Function("return this")()||(0,eval)("this")}catch(t){"object"==typeof window&&(i=window)}t.exports=i},function(t,e,i){"use strict";(function(t){function n(t,e){o(t).find(".tag-name").each(function(){o(this).click(function(){var t=o(this).text(),i=t.split(":");return e(i[0],i[1]),!0})})}Object.defineProperty(e,"__esModule",{value:!0});var r=i(0),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=a.default;a.default.fn.autocomplete_tagging=function(e){function 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c=window.Tour,h="undefined"==typeof Galaxy?"/":Galaxy.root,d={storage:window.sessionStorage,onEnd:function(){sessionStorage.removeItem("activeGalaxyTour")},delay:150,orphan:!0},f=function(e){return t.each(e.steps,function(e){e.preclick&&(e.onShow=function(){t.each(e.preclick,function(t){n(t).click()})}),e.postclick&&(e.onHide=function(){t.each(e.postclick,function(t){n(t).click()})}),e.textinsert&&(e.onShown=function(){n(e.element).val(e.textinsert).trigger("change")})}),e},p=r.Model.extend({urlRoot:h+"api/tours"}),m=r.Collection.extend({url:h+"api/tours",model:p}),v=e.ToursView=r.View.extend({title:(0,u.default)("Tours"),initialize:function(){var t=this;this.setElement("<div/>"),this.model=new m,this.model.fetch({success:function(){t.render()},error:function(){console.error("Failed to fetch tours.")}})},render:function(){var e=t.template('<h2>Galaxy Tours</h2>\n<p>This page presents a list of interactive tours available on this Galaxy server.\nSelect any tour to get started (and 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e=n(t.target),i="block",r=e.attr("tag-selector-button");e.toggleClass("btn-primary"),e.toggleClass("btn-secondary"),e.hasClass("btn-secondary")&&(i="none"),n("div[tag='"+r+"']").css({display:i})})}});e.default={ToursView:v,giveTourWithData:a,giveTourById:o,activeGalaxyTourRunner:s}}).call(e,i(1),i(0),i(2))},function(t,e,i){"use strict";(function(t,n,r){Object.defineProperty(e,"__esModule",{value:!0});var a=i(3),o=function(t){return t&&t.__esModule?t:{default:t}}(a),s=t.View.extend({initialize:function(e){this.model=e&&e.model||new t.Model(e),this.setElement(n("<div/>").addClass("corner frame")),this.$el.append(n("<div/>").addClass("f-header corner").append(n("<div/>").addClass("f-title")).append(n("<div/>").addClass("f-icon f-close fa fa-close").tooltip({title:(0,o.default)("Close"),placement:"bottom"}))).append(n("<div/>").addClass("f-content")).append(n("<div/>").addClass("f-resize f-icon corner fa 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t=this;this.model.get("searchable")?this._renderSearchable():this._renderClassic(),this.$el.addClass(this.model.get("cls")).attr("id",this.model.get("id")),this.$select.empty().addClass("select").attr("id",this.model.get("id")+"_select").prop("multiple",this.model.get("multiple")).on("change",function(){t.value(t._getValue()),t.trigger("change")}),this._changeData(),this._changeWait(),this._changeVisible(),this._changeDisabled()},_renderClassic:function(){var t=this;this.$el.addClass(this.model.get("multiple")?"ui-select-multiple":"ui-select").append(this.$select=n("<select/>")).append(this.$dropdown=n("<div/>")).append(this.$resize=n("<div/>").append(this.$resize_icon=n("<i/>"))),this.model.get("multiple")?(this.$dropdown.hide(),this.$resize_icon.addClass("fa fa-angle-double-right fa-rotate-45").show(),this.$resize.removeClass().addClass("icon-resize").show().off("mousedown").on("mousedown",function(e){var 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e=[];0!==t.all_button.value()&&r.each(t.model.get("data"),function(t){e.push(t.value)}),t.value(e),t.trigger("change")}}),this.$el.prepend(this.all_button.$el))},_match:function(t,e){return!t||""==t||String(e).toUpperCase().indexOf(t.toUpperCase())>=0},_changeData:function(){var t=this;this.data=[],!this.model.get("multiple")&&this.model.get("optional")&&this.data.push({value:"__null__",label:t.model.get("empty_text")}),r.each(this.model.get("data"),function(e){t.data.push(e)}),0==this.length()&&this.data.push({value:"__null__",label:this.model.get("error_text")}),this.model.get("searchable")?(this.data2=[],r.each(this.data,function(e,i){t.data2.push({order:i,id:e.value,text:e.label,tags:e.tags})}),this.$select.data("select2")&&this.$select.select2("destroy"),this.matched_tags={},this.$select.select2({data:t.data2,closeOnSelect:!this.model.get("multiple"),multiple:this.model.get("multiple"),query:function(e){t.matched_tags={};var i=t.model.get("pagesize"),n=r.filter(t.data2,function(i){var n=!1;return r.each(i.tags,function(i){t._match(e.term,i)&&(n=t.matched_tags[i]=!0)}),n||t._match(e.term,i.text)});e.callback({results:n.slice((e.page-1)*i,e.page*i),more:n.length>=e.page*i})},formatResult:function(e){return r.escape(e.text)+'<div class="ui-tags">'+r.reduce(e.tags,function(e,i){return t.matched_tags[i]?e+'&nbsp;<div class="label label-info">'+r.escape(i)+"</div>":e},"")+"</div>"}}),this.$(".select2-container .select2-search input").off("blur")):(this.$select.find("option").remove(),r.each(this.data,function(e){t.$select.append(n("<option/>").attr("value",e.value).html(r.escape(e.label)))})),this.model.set("disabled",this.model.get("readonly")||0==this.length()),this._changeValue()},_changeDisabled:function(){this.model.get("searchable")?this.$select.select2(this.model.get("disabled")?"disable":"enable"):this.$select.prop("disabled",this.model.get("disabled"))},_changeWait:function(){this.$dropdown.removeClass().addClass("icon-dropdown fa").addClass(this.model.get("wait")?"fa-spinner fa-spin":"fa-caret-down")},_changeVisible:function(){this.$el[this.model.get("visible")?"show":"hide"](),this.$select[this.model.get("visible")?"show":"hide"]()},_changeValue:function(){if(this._setValue(this.model.get("value")),this.model.get("multiple")){if(this.all_button){var t=this._getValue();this.all_button.value(n.isArray(t)?t.length:0,this.length())}}else null!==this._getValue()||this.model.get("optional")||this._setValue(this.first())},value:function(t){return void 0!==t&&this.model.set("value",t),this._getValue()},first:function(){return this.data.length>0?this.data[0].value:null},exists:function(t){return r.findWhere(this.data,{value:t})},text:function(){var t=this._getValue(),e=this.exists(n.isArray(t)?t[0]:t);return e?e.label:""},show:function(){this.model.set("visible",!0)},hide:function(){this.model.set("visible",!1)},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},disabled:function(){return this.model.get("disabled")},enable:function(){this.model.set("disabled",!1)},disable:function(){this.model.set("disabled",!0)},add:function(t,e){r.each(this.model.get("data"),function(e){e.keep&&!r.findWhere(t,{value:e.value})&&t.push(e)}),e&&t&&t.sort(e),this.model.set("data",t)},update:function(t){this.model.set("data",t)},setOnChange:function(t){this.model.set("onchange",t)},length:function(){return n.isArray(this.model.get("data"))?this.model.get("data").length:0},_setValue:function(t){var e=this;if(null!==t&&void 0!==t||(t="__null__"),this.model.get("multiple")?t=n.isArray(t)?t:[t]:n.isArray(t)&&(t=t.length>0?t[0]:"__null__"),this.model.get("searchable")){if(n.isArray(t)){var i=[];r.each(t,function(t){var n=r.findWhere(e.data2,{id:t});n&&i.push(n)}),t=i}else{t=r.findWhere(this.data2,{id:t})}this.$select.select2("data",t)}else this.$select.val(t)},_getValue:function(){var t=null;if(this.model.get("searchable")){var e=this.$select.select2("data");e&&(n.isArray(e)?(t=[],e.sort(function(t,e){return t.order-e.order}),r.each(e,function(e){t.push(e.id)})):t=e.id)}else t=this.$select.val();return s.default.isEmpty(t)?null:t}});e.default={View:c}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(4),s=a(o),l=i(44),u=a(l),c=t.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new t.Model({visible:!0,data:[],id:s.default.uid(),error_text:"No options available.",wait_text:"Please wait...",multiple:!1,optional:!1,onchange:function(){}}).set(e),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:visible",this._changeVisible,this),this.on("change",function(){i.model.get("onchange")(i.value())}),this.render()},render:function(){var t=this;this.$el.empty().removeClass().addClass("ui-options").append(this.$message=n("<div/>")).append(this.$menu=n("<div/>").addClass("ui-options-menu")).append(this.$options=n(this._template())),this.all_button=null,this.model.get("multiple")&&(this.all_button=new u.default.ButtonCheck({onclick:function(){t.$("input").prop("checked",0!==t.all_button.value()),t.value(t._getValue()),t.trigger("change")}}),this.$menu.append(this.all_button.$el)),this._changeData(),this._changeWait(),this._changeVisible()},update:function(t){this.model.set("data",t)},_changeData:function(){var t=this;this.$options.empty(),this._templateOptions?this.$options.append(this._templateOptions(this.model.get("data"))):r.each(this.model.get("data"),function(e){t.$options.append(n(t._templateOption(e)).addClass("ui-option").tooltip({title:e.tooltip,placement:"bottom"}))});var t=this;this.$("input").on("change",function(){t.value(t._getValue()),t.trigger("change")}),this._changeValue(),this._changeWait()},_changeVisible:function(){this.$el[this.model.get("visible")?"show":"hide"]()},_changeWait:function(){this.model.get("wait")?0===this.length()&&(this._messageShow(this.model.get("wait_text"),"info"),this.$options.hide(),this.$menu.hide()):0===this.length()?(this._messageShow(this.model.get("error_text"),"danger"),this.$options.hide(),this.$menu.hide()):(this.$message.hide(),this.$options.css("display","inline-block"),this.$menu.show())},_changeValue:function(){this._setValue(this.model.get("value")),null!==this._getValue()||this.model.get("multiple")||this.model.get("optional")||this._setValue(this.first()),this.all_button&&this.all_button.value(n.isArray(this._getValue())?this._getValue().length:0,this.length())},value:function(t){return void 0!==t&&this.model.set("value",t),this._getValue()},first:function(){var t=this.$("input").first();return t.length>0?t.val():null},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},length:function(){return this.$(".ui-option").length},_setValue:function(t){var e=this;if(void 0!==t&&(this.$("input").prop("checked",!1),null!==t)){var i=n.isArray(t)?t:[t];r.each(i,function(t){e.$('input[value="'+t+'"]').first().prop("checked",!0)})}},_getValue:function(){var t=[];return this.$(":checked").each(function(){t.push(n(this).val())}),s.default.isEmpty(t)?null:this.model.get("multiple")?t:t[0]},_messageShow:function(t,e){this.$message.show().removeClass().addClass("ui-message alert alert-"+e).html(t)},_template:function(){return n("<div/>").addClass("ui-options-list")}}),h=c.extend({_templateOption:function(t){var e=s.default.uid();return n("<div/>").addClass("ui-option").append(n("<input/>").attr({id:e,type:this.model.get("type"),name:this.model.id,value:t.value})).append(n("<label/>").addClass("ui-options-label").attr("for",e).html(t.label))}}),d={};d.View=h.extend({initialize:function(t){t.type="radio",h.prototype.initialize.call(this,t)}});var f={};f.View=h.extend({initialize:function(t){t.type="checkbox",t.multiple=!0,h.prototype.initialize.call(this,t)}});var p={};p.View=c.extend({initialize:function(t){c.prototype.initialize.call(this,t)},_setValue:function(t){void 0!==t&&(this.$("input").prop("checked",!1),this.$("label").removeClass("active"),this.$('[value="'+t+'"]').prop("checked",!0).closest("label").addClass("active"))},_templateOption:function(t){var e=n("<label/>").addClass("btn btn-default");return t.icon&&e.append(n("<i/>").addClass("fa").addClass(t.icon).addClass(!t.label&&"no-padding")),e.append(n("<input/>").attr({type:"radio",name:this.model.id,value:t.value})),t.label&&e.append(t.label),e},_template:function(){return n("<div/>").addClass("btn-group ui-radiobutton").attr("data-toggle","buttons")}}),e.default={Base:c,BaseIcons:h,Radio:d,RadioButton:p,Checkbox:f}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(3),o=r(a),s=i(1),l=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(s),u=i(148),c=r(u),h=i(27),d=r(h),f=i(41),p=r(f),m=i(14),v=r(m),g=i(19),_=r(g),y=i(4),b=r(y);i(70),i(69),i(71),i(30),i(74),i(40),i(72),i(73),i(20);var w=null,x=null,k=function(){this.initialize&&this.initialize.apply(this,arguments)};k.extend=t.Model.extend;var C=k.extend({initialize:function(t){b.default.cssLoadFile("static/style/jquery.rating.css"),b.default.cssLoadFile("static/style/autocomplete_tagging.css"),b.default.cssLoadFile("static/style/jquery-ui/smoothness/jquery-ui.css"),b.default.cssLoadFile("static/style/library.css"),b.default.cssLoadFile("static/style/trackster.css"),this.baseURL=t},save_viz:function(){Galaxy.modal.show({title:"Saving...",body:"progress"});var t=[];n(".bookmark").each(function(){t.push({position:n(this).children(".position").text(),annotation:n(this).children(".annotation").text()})});var e=x.overview_drawable?x.overview_drawable.config.get_value("name"):null,i={view:x.to_dict(),viewport:{chrom:x.chrom,start:x.low,end:x.high,overview:e},bookmarks:t};return n.ajax({url:Galaxy.root+"visualization/save",type:"POST",dataType:"json",data:{id:x.vis_id,title:x.config.get_value("name"),dbkey:x.dbkey,type:"trackster",vis_json:JSON.stringify(i)}}).success(function(t){Galaxy.modal.hide(),x.vis_id=t.vis_id,x.has_changes=!1,window.history.pushState({},"",t.url+window.location.hash)}).error(function(){Galaxy.modal.show({title:(0,o.default)("Could Not Save"),body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})},createButtonMenu:function(){var t=this,e=p.default.create_icon_buttons_menu([{icon_class:"plus-button",title:(0,o.default)("Add tracks"),on_click:function(){d.default.select_datasets({dbkey:x.dbkey},function(t){l.each(t,function(t){x.add_drawable(c.default.object_from_template(t,x,x))})})}},{icon_class:"block--plus",title:(0,o.default)("Add group"),on_click:function(){x.add_drawable(new c.default.DrawableGroup(x,x,{name:"New Group"}))}},{icon_class:"bookmarks",title:(0,o.default)("Bookmarks"),on_click:function(){force_right_panel("0px"==n("div#right").css("right")?"hide":"show")}},{icon_class:"globe",title:(0,o.default)("Circster"),on_click:function(){window.location=t.baseURL+"visualization/circster?id="+x.vis_id}},{icon_class:"disk--arrow",title:(0,o.default)("Save"),on_click:function(){t.save_viz()}},{icon_class:"cross-circle",title:(0,o.default)("Close"),on_click:function(){t.handle_unsaved_changes(x)}}],{tooltip_config:{placement:"bottom"}});return this.buttonMenu=e,e},add_bookmark:function(t,e,i){var r=n("#right .unified-panel-body"),a=n("<div/>").addClass("bookmark").appendTo(r),o=n("<div/>").addClass("position").appendTo(a),s=(n("<a href=''/>").text(t).appendTo(o).click(function(){return x.go_to(t),!1}),n("<div/>").text(e).appendTo(a));if(i){var l=n("<div/>").addClass("delete-icon-container").prependTo(a).click(function(){return a.slideUp("fast"),a.remove(),x.has_changes=!0,!1});n("<a href=''/>").addClass("icon-button delete").appendTo(l);s.make_text_editable({num_rows:3,use_textarea:!0,help_text:"Edit bookmark note"}).addClass("annotation")}return x.has_changes=!0,a},create_visualization:function(t,e,i,r,a){var o=this,s=new c.default.TracksterView(l.extend(t,{header:!1}));return s.editor=!0,n.when(s.load_chroms_deferred).then(function(t){if(e){var n=e.chrom,l=e.start,u=e.end,h=e.overview;n&&void 0!==l&&u?s.change_chrom(n,l,u):s.change_chrom(t[0].chrom)}else s.change_chrom(t[0].chrom);if(i)for(var d=0;d<i.length;d++)s.add_drawable(c.default.object_from_template(i[d],s,s));for(var d=0;d<s.drawables.length;d++)if(s.drawables[d].config.get_value("name")===h){s.set_overview(s.drawables[d]);break}if(r)for(var f,d=0;d<r.length;d++)f=r[d],o.add_bookmark(f.position,f.annotation,a);s.has_changes=!1}),this.set_up_router({view:s}),s},set_up_router:function(e){new d.default.TrackBrowserRouter(e),t.history.start()},init_keyboard_nav:function(t){n(document).keyup(function(e){if(!n(e.srcElement).is(":input"))switch(e.which){case 37:t.move_fraction(.25);break;case 38:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()-20);break;case 39:t.move_fraction(-.25);break;case 40:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()+20)}})},handle_unsaved_changes:function(t){if(t.has_changes){var e=this;Galaxy.modal.show({title:(0,o.default)("Close visualization"),body:"There are unsaved changes to your visualization which will be lost if you do not save them.",buttons:{Cancel:function(){Galaxy.modal.hide()},"Leave without Saving":function(){n(window).off("beforeunload"),window.location=Galaxy.root+"visualization"},Save:function(){n.when(e.save_viz()).then(function(){window.location=Galaxy.root+"visualization"})}}})}else window.location=Galaxy.root+"visualization"}}),S=t.View.extend({initialize:function(){w=new C(Galaxy.root),w.createButtonMenu(),w.buttonMenu.$el.attr("style","float: right"),n("#center .unified-panel-header-inner").append(w.buttonMenu.$el),n("#right .unified-panel-title").append("Bookmarks"),n("#right .unified-panel-icons").append("<a id='add-bookmark-button' class='icon-button menu-button plus-button' href='javascript:void(0);' title='Add bookmark'></a>"),n("#right-border").click(function(){x.resize_window()}),force_right_panel("hide"),galaxy_config.app.id?this.view_existing():v.default.get("dataset_id")?this.choose_existing_or_new():this.view_new()},choose_existing_or_new:function(){var t=this,e=v.default.get("dbkey"),i={},n={dbkey:e,dataset_id:v.default.get("dataset_id"),hda_ldda:v.default.get("hda_ldda"),gene_region:v.default.get("gene_region")};e&&(i["f-dbkey"]=e),Galaxy.modal.show({title:"View Data in a New or Saved Visualization?",body:"<p><ul style='list-style: disc inside none'>You can add this dataset as:<li>a new track to one of your existing, saved Trackster sessions if they share the genome build: <b>"+(e||"Not available.")+"</b></li><li>or create a new session with this dataset as the only track</li></ul></p>",buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"View in saved visualization":function(){t.view_in_saved(n)},"View in new visualization":function(){t.view_new()}}})},view_in_saved:function(t){var e=new _.default({url_base:Galaxy.root+"visualization/list_tracks",dict_format:!0,embedded:!0});Galaxy.modal.show({title:(0,o.default)("Add Data to Saved Visualization"),body:e.$el,buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},"Add to visualization":function(){n(parent.document).find("input[name=id]:checked").each(function(){t.id=n(this).val(),window.location=Galaxy.root+"visualization/trackster?"+n.param(t)})}}})},view_existing:function(){var t=galaxy_config.app.viz_config;x=w.create_visualization({container:n("#center .unified-panel-body"),name:t.title,vis_id:t.vis_id,dbkey:t.dbkey},t.viewport,t.tracks,t.bookmarks,!0),this.init_editor()},view_new:function(){var t=this;n.ajax({url:Galaxy.root+"api/genomes?chrom_info=True",data:{},error:function(){alert("Couldn't create new browser.")},success:function(e){Galaxy.modal.show({title:(0,o.default)("New Visualization"),body:t.template_view_new(e),buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},Create:function(){t.create_browser(n("#new-title").val(),n("#new-dbkey").val()),Galaxy.modal.hide()}}});var i=e.map(function(t){return t[1]});galaxy_config.app.default_dbkey&&l.contains(i,galaxy_config.app.default_dbkey)&&n("#new-dbkey").val(galaxy_config.app.default_dbkey),n("#new-title").focus(),n("select[name='dbkey']").select2(),n("#overlay").css("overflow","auto")}})},template_view_new:function(t){for(var e='<form id="new-browser-form" action="javascript:void(0);" method="post" onsubmit="return false;"><div class="form-row"><label for="new-title">Browser name:</label><div class="form-row-input"><input type="text" name="title" id="new-title" value="Unnamed"></input></div><div style="clear: both;"></div></div><div class="form-row"><label for="new-dbkey">Reference genome build (dbkey): </label><div class="form-row-input"><select name="dbkey" id="new-dbkey">',i=0;i<t.length;i++)e+='<option value="'+t[i][1]+'">'+t[i][0]+"</option>";return e+='</select></div><div style="clear: both;"></div></div><div class="form-row">Is the build not listed here? <a href="'+Galaxy.root+'custom_builds">Add a Custom Build</a></div></form>'},create_browser:function(t,e){n(document).trigger("convert_to_values"),x=w.create_visualization({container:n("#center .unified-panel-body"),name:t,dbkey:e},galaxy_config.app.gene_region),this.init_editor(),x.editor=!0},init_editor:function(){n("#center .unified-panel-title").text(x.config.get_value("name")+" ("+x.dbkey+")"),galaxy_config.app.add_dataset&&n.ajax({url:Galaxy.root+"api/datasets/"+galaxy_config.app.add_dataset,data:{hda_ldda:"hda",data_type:"track_config"},dataType:"json",success:function(t){x.add_drawable(c.default.object_from_template(t,x,x))}}),n("#add-bookmark-button").click(function(){var t=x.chrom+":"+x.low+"-"+x.high;return w.add_bookmark(t,"Bookmark description",!0)}),w.init_keyboard_nav(x),n(window).on("beforeunload",function(){if(x.has_changes)return"There are unsaved changes to your visualization that will be lost if you leave this page."})}});e.default={TracksterUI:C,GalaxyApp:S}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(1),o=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=i(36),l=r(s),u=i(35),c=r(u),h=i(86),d=(r(h),{hidden:!1,show:function(){this.set("hidden",!1)},hide:function(){this.set("hidden",!0)},toggle:function(){this.set("hidden",!this.get("hidden"))},is_visible:function(){return!this.attributes.hidden}}),f=t.Model.extend({defaults:{name:null,label:null,type:null,value:null,html:null,num_samples:5},initialize:function(t){this.attributes.html=unescape(this.attributes.html)},copy:function(){return new f(this.toJSON())},set_value:function(t){this.set("value",t||"")}}),p=t.Collection.extend({model:f}),m=f.extend({}),v=f.extend({set_value:function(t){this.set("value",parseInt(t,10))},get_samples:function(){return d3.scale.linear().domain([this.get("min"),this.get("max")]).ticks(this.get("num_samples"))}}),g=v.extend({set_value:function(t){this.set("value",parseFloat(t))}}),_=f.extend({get_samples:function(){return o.map(this.get("options"),function(t){return t[0]})}});f.subModelTypes={integer:v,float:g,data:m,select:_};var y=t.Model.extend({defaults:{id:null,name:null,description:null,target:null,inputs:[],outputs:[]},urlRoot:Galaxy.root+"api/tools",initialize:function(t){this.set("inputs",new p(o.map(t.inputs,function(t){return new(f.subModelTypes[t.type]||f)(t)})))},toJSON:function(){var e=t.Model.prototype.toJSON.call(this);return e.inputs=this.get("inputs").map(function(t){return t.toJSON()}),e},remove_inputs:function(t){var e=this,i=e.get("inputs").filter(function(e){return-1!==t.indexOf(e.get("type"))});e.get("inputs").remove(i)},copy:function(e){var i=new y(this.toJSON());if(e){var n=new t.Collection;i.get("inputs").each(function(t){t.get_samples()&&n.push(t)}),i.set("inputs",n)}return i},apply_search_results:function(t){return-1!==o.indexOf(t,this.attributes.id)?this.show():this.hide(),this.is_visible()},set_input_value:function(t,e){this.get("inputs").find(function(e){return e.get("name")===t}).set("value",e)},set_input_values:function(t){var e=this;o.each(o.keys(t),function(i){e.set_input_value(i,t[i])})},run:function(){return this._run()},rerun:function(t,e){return this._run({action:"rerun",target_dataset_id:t.id,regions:e})},get_inputs_dict:function(){var t={};return this.get("inputs").each(function(e){t[e.get("name")]=e.get("value")}),t},_run:function(t){var e=o.extend({tool_id:this.id,inputs:this.get_inputs_dict()},t),i=n.Deferred(),r=new l.default.ServerStateDeferred({ajax_settings:{url:this.urlRoot,data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});return n.when(r.go()).then(function(t){i.resolve(new c.default.DatasetCollection(t))}),i}});o.extend(y.prototype,d);var b=(t.View.extend({}),t.Collection.extend({model:y})),w=t.Model.extend(d),x=t.Model.extend({defaults:{elems:[],open:!1},clear_search_results:function(){o.each(this.attributes.elems,function(t){t.show()}),this.show(),this.set("open",!1)},apply_search_results:function(t){var e,i=!0;o.each(this.attributes.elems,function(n){n instanceof w?(e=n,e.hide()):n instanceof y&&n.apply_search_results(t)&&(i=!1,e&&e.show())}),i?this.hide():(this.show(),this.set("open",!0))}});o.extend(x.prototype,d);var k=t.Model.extend({defaults:{search_hint_string:"search tools",min_chars_for_search:3,clear_btn_url:"",visible:!0,query:"",results:null,clear_key:27},urlRoot:Galaxy.root+"api/tools",initialize:function(){this.on("change:query",this.do_search)},do_search:function(){var t=this.attributes.query;if(t.length<this.attributes.min_chars_for_search)return void this.set("results",null);var e=t;this.timer&&clearTimeout(this.timer),n("#search-clear-btn").hide(),n("#search-spinner").show();var i=this;this.timer=setTimeout(function(){"undefined"!=typeof ga&&ga("send","pageview",Galaxy.root+"?q="+e),n.get(i.urlRoot,{q:e},function(t){i.set("results",t),n("#search-spinner").hide(),n("#search-clear-btn").show()},"json")},400)},clear_search:function(){this.set("query",""),this.set("results",null)}});o.extend(k.prototype,d);var C=t.Model.extend({initialize:function(e){this.attributes.tool_search=e.tool_search,this.attributes.tool_search.on("change:results",this.apply_search_results,this),this.attributes.tools=e.tools,this.attributes.layout=new t.Collection(this.parse(e.layout))},parse:function(t){var e=this,i=function t(i){var n=i.model_class;if(n.indexOf("Tool")===n.length-4)return e.attributes.tools.get(i.id);if("ToolSection"===n){var r=o.map(i.elems,t);return i.elems=r,new x(i)}return"ToolSectionLabel"===n?new w(i):void 0};return o.map(t,i)},clear_search_results:function(){this.get("layout").each(function(t){t instanceof x?t.clear_search_results():t.show()})},apply_search_results:function(){var t=this.get("tool_search").get("results");if(null===t)return void this.clear_search_results();var e=null;this.get("layout").each(function(i){i instanceof w?(e=i,e.hide()):i instanceof y?i.apply_search_results(t)&&e&&e.show():(e=null,i.apply_search_results(t))})}}),S=t.View.extend({initialize:function(){this.model.on("change:hidden",this.update_visible,this),this.update_visible()},update_visible:function(){this.model.attributes.hidden?this.$el.hide():this.$el.show()}}),T=S.extend({tagName:"div",render:function(){var t=n("<div/>");t.append(D.tool_link(this.model.toJSON()));var e=this.model.get("form_style",null);if("upload1"===this.model.id)t.find("a").on("click",function(t){t.preventDefault(),Galaxy.upload.show()});else if("regular"===e){var i=this;t.find("a").on("click",function(t){t.preventDefault(),Galaxy.router.push("/",{tool_id:i.model.id,version:i.model.get("version")})})}return this.$el.append(t),this}}),A=S.extend({tagName:"div",className:"toolPanelLabel",render:function(){return this.$el.append(n("<span/>").text(this.model.attributes.text)),this}}),M=S.extend({tagName:"div",className:"toolSectionWrapper",initialize:function(){S.prototype.initialize.call(this),this.model.on("change:open",this.update_open,this)},render:function(){this.$el.append(D.panel_section(this.model.toJSON()));var t=this.$el.find(".toolSectionBody");return o.each(this.model.attributes.elems,function(e){if(e instanceof y){var i=new T({model:e,className:"toolTitle"});i.render(),t.append(i.$el)}else if(e instanceof w){var n=new A({model:e});n.render(),t.append(n.$el)}}),this},events:{"click .toolSectionTitle > a":"toggle"},toggle:function(){this.model.set("open",!this.model.attributes.open)},update_open:function(){this.model.attributes.open?this.$el.children(".toolSectionBody").slideDown("fast"):this.$el.children(".toolSectionBody").slideUp("fast")}}),E=t.View.extend({tagName:"div",id:"tool-search",className:"bar",events:{click:"focus_and_select","keyup :input":"query_changed","change :input":"query_changed","click #search-clear-btn":"clear"},render:function(){return this.$el.append(D.tool_search(this.model.toJSON())),this.model.is_visible()||this.$el.hide(),n("#messagebox").is(":visible")&&this.$el.css("top","95px"),this.$el.find("[title]").tooltip(),this},focus_and_select:function(){this.$el.find(":input").focus().select()},clear:function(){return this.model.clear_search(),this.$el.find(":input").val(""),this.focus_and_select(),!1},query_changed:function(t){if(this.model.attributes.clear_key&&this.model.attributes.clear_key===t.which)return this.clear(),!1;this.model.set("query",this.$el.find(":input").val())}}),O=t.View.extend({tagName:"div",className:"toolMenu",initialize:function(){this.model.get("tool_search").on("change:results",this.handle_search_results,this)},render:function(){var t=this,e=new E({model:this.model.get("tool_search")});return e.render(),t.$el.append(e.$el),this.model.get("layout").each(function(e){if(e instanceof x){var i=new M({model:e});i.render(),t.$el.append(i.$el)}else if(e instanceof y){var n=new T({model:e,className:"toolTitleNoSection"});n.render(),t.$el.append(n.$el)}else if(e instanceof w){var r=new A({model:e});r.render(),t.$el.append(r.$el)}}),t.$el.find("a.tool-link").click(function(e){var i=n(this).attr("class").split(/\s+/)[0],r=t.model.get("tools").get(i);t.trigger("tool_link_click",e,r)}),this},handle_search_results:function(){var t=this.model.get("tool_search").get("results");t&&0===t.length?n("#search-no-results").show():n("#search-no-results").hide()}}),$=t.View.extend({className:"toolForm",render:function(){this.$el.children().remove(),this.$el.append(D.tool_form(this.model.toJSON()))}}),D=(t.View.extend({className:"toolMenuAndView",initialize:function(){this.tool_panel_view=new O({collection:this.collection}),this.tool_form_view=new $},render:function(){this.tool_panel_view.render(),this.tool_panel_view.$el.css("float","left"),this.$el.append(this.tool_panel_view.$el),this.tool_form_view.$el.hide(),this.$el.append(this.tool_form_view.$el);var t=this;this.tool_panel_view.on("tool_link_click",function(e,i){e.preventDefault(),t.show_tool(i)})},show_tool:function(t){var e=this;t.fetch().done(function(){e.tool_form_view.model=t,e.tool_form_view.render(),e.tool_form_view.$el.show(),n("#left").width("650px")})}}),{tool_search:o.template(['<input id="tool-search-query" class="search-query parent-width" name="query" ','placeholder="<%- search_hint_string %>" autocomplete="off" type="text" />','<a id="search-clear-btn" title="clear search (esc)"> </a>','<span id="search-spinner" class="search-spinner fa fa-spinner fa-spin"></span>'].join("")),panel_section:o.template(['<div class="toolSectionTitle" id="title_<%- id %>">','<a href="javascript:void(0)"><span><%- name %></span></a>',"</div>",'<div id="<%- id %>" class="toolSectionBody" style="display: none;">','<div class="toolSectionBg"></div>',"<div>"].join("")),tool_link:o.template(['<a class="<%- id %> tool-link" href="<%= link %>" target="<%- target %>" minsizehint="<%- min_width %>">','<span class="labels">',"<% _.each( labels, function( label ){ %>",'<span class="label label-default label-<%- label %>">',"<%- label %>","</span>","<% }); %>","</span>",'<span class="tool-old-link">',"<%- name %>","</span>"," <%- description %>","</a>"].join("")),tool_form:o.template(['<div class="toolFormTitle"><%- tool.name %> (version <%- tool.version %>)</div>','<div class="toolFormBody">',"<% _.each( tool.inputs, function( input ){ %>",'<div class="form-row">','<label for="<%- input.name %>"><%- input.label %>:</label>','<div class="form-row-input">',"<%= input.html %>","</div>",'<div class="toolParamHelp" style="clear: both;">',"<%- input.help %>","</div>",'<div style="clear: both;"></div>',"</div>","<% }); %>","</div>",'<div class="form-row form-actions">','<input type="submit" class="btn btn-primary" name="runtool_btn" value="Execute" />',"</div>",'<div class="toolHelp">','<div class="toolHelpBody"><% tool.help %></div>',"</div>"].join(""),{variable:"tool"})});e.default={ToolParameter:f,IntegerToolParameter:v,SelectToolParameter:_,Tool:y,ToolCollection:b,ToolSearch:k,ToolPanel:C,ToolPanelView:O,ToolFormView:$}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(4),u=a(l),c=i(6),h=a(c),d=i(8),f=a(d),p=i(45),m=a(p),v=i(34),g=a(v),_=t.View.extend({initialize:function(t){var e=this;this.modal=parent.Galaxy.modal||new f.default.View,this.form=new m.default(u.default.merge({listen_to_history:!0,always_refresh:!1,buildmodel:function(t,i){var r=i.model.attributes,a="",o={},l=r.job_id;l?a=Galaxy.root+"api/jobs/"+l+"/build_for_rerun":(a=Galaxy.root+"api/tools/"+r.id+"/build",o=n.extend({},Galaxy.params),o.tool_id&&delete o.tool_id),r.version&&(o.tool_version=r.version),u.default.get({url:a,data:o,success:function(n){if(!n.display)return void(window.location=Galaxy.root);i.model.set(n),e._customize(i),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model ready.",n),t.resolve()},error:function(e,a){var o=e&&e.err_msg||"Uncaught error.";401==a?window.location=Galaxy.root+"user/login?"+n.param({redirect:Galaxy.root+"?tool_id="+r.id}):i.$el.is(":empty")?i.$el.prepend(new h.default.Message({message:o,status:"danger",persistent:!0,large:!0}).$el):Galaxy.modal&&Galaxy.modal.show({title:(0,s.default)("Tool request failed"),body:o,buttons:{Close:function(){Galaxy.modal.hide()}}}),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model request failed.",e),t.reject()}})},postchange:function(t,e){var i={tool_id:e.model.get("id"),tool_version:e.model.get("version"),inputs:n.extend(!0,{},e.data.create())};e.wait(!0),Galaxy.emit.debug("tool-form::postchange()","Sending current state.",i),u.default.request({type:"POST",url:Galaxy.root+"api/tools/"+e.model.get("id")+"/build",data:i,success:function(i){e.update(i),e.wait(!1),Galaxy.emit.debug("tool-form::postchange()","Received new model.",i),t.resolve()},error:function(e){Galaxy.emit.debug("tool-form::postchange()","Refresh request failed.",e),t.reject()}})}},t)),this.deferred=this.form.deferred,this.setElement("<div/>"),this.$el.append(this.form.$el)},_customize:function(t){var e=this,i=t.model.attributes,n=new h.default.Button({icon:"fa-check",tooltip:"Execute: "+i.name+" ("+i.version+")",title:(0,s.default)("Execute"),cls:"btn btn-primary ui-clear-float",wait_cls:"btn btn-info ui-clear-float",onclick:function(){n.wait(),t.portlet.disable(),e.submit(i,function(){n.unwait(),t.portlet.enable()})}});i.buttons={execute:n},i.job_id&&i.job_remap&&i.inputs.push({label:"Resume dependencies from this job",name:"rerun_remap_job_id",type:"select",display:"radio",ignore:"__ignore__",value:"__ignore__",options:[["Yes",i.job_id],["No","__ignore__"]],help:"The previous run of this tool failed and other tools were waiting for it to finish successfully. Use this option to resume those tools using the new output(s) of this tool run."})},submit:function(t,e){var i=this,a={tool_id:t.id,tool_version:t.version,inputs:this.form.data.create()};if(this.form.trigger("reset"),!i.validate(a))return Galaxy.emit.debug("tool-form::submit()","Submission canceled. Validation failed."),void(e&&e());if(t.action!==Galaxy.root+"tool_runner/index"){var o=n("<form/>").attr({action:t.action,method:t.method,enctype:t.enctype});return r.each(a.inputs,function(t,e){o.append(n("<input/>").attr({name:e,value:t}))}),o.hide().appendTo("body").submit().remove(),void(e&&e())}Galaxy.emit.debug("tool-form::submit()","Validation complete.",a),u.default.request({type:"POST",url:Galaxy.root+"api/tools",data:a,success:function(t){if(e&&e(),i.$el.children().hide(),i.$el.append(i._templateSuccess(t)),t.jobs&&t.jobs.length>0){i.$el.append(n("<div/>",{id:"webhook-view"}));new g.default.WebhookView({urlRoot:Galaxy.root+"api/webhooks/tool",toolId:a.tool_id})}parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents()},error:function(t){e&&e(),Galaxy.emit.debug("tool-form::submit","Submission failed.",t);var n=!1;if(t&&t.err_data){var r=i.form.data.matchResponse(t.err_data);for(var o in r){i.form.highlight(o,r[o]),n=!0;break}}n||i.modal.show({title:(0,s.default)("Job submission failed"),body:i._templateError(a,t&&t.err_msg),buttons:{Close:function(){i.modal.hide()}}})}})},validate:function(t){var e=t.inputs,i=-1,n=null;for(var r in e){var a=e[r],o=this.form.data.match(r),s=this.form.field_list[o],l=this.form.input_list[o];if(o&&l&&s){if(!l.optional&&null==a)return this.form.highlight(o),!1;if(a&&a.batch){var u=a.values.length,c=u>0&&a.values[0]&&a.values[0].src;if(c)if(null===n)n=c;else if(n!==c)return this.form.highlight(o,"Please select either dataset or dataset list fields for all batch mode fields."),!1;if(-1===i)i=u;else if(i!==u)return this.form.highlight(o,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+u+"</b> selection(s) while a previous field contains <b>"+i+"</b>."),!1}}else Galaxy.emit.debug("tool-form::validate()","Retrieving input objects failed.")}return!0},_templateSuccess:function(t){if(t.jobs&&t.jobs.length>0){var e=t.jobs.length,i=1==e?"1 job has":e+" jobs have",a=n("<div/>").addClass("donemessagelarge").append(n("<p/>").text(i+" been successfully added to the queue - resulting in the following datasets:"));return r.each(t.outputs,function(t){a.append(n("<p/>").addClass("messagerow").append(n("<b/>").text(t.hid+": "+t.name)))}),a.append(n("<p/>").append("<b/>").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")),a}return this._templateError(t,"Invalid success response. No jobs found.")},_templateError:function(t,e){return n("<div/>").addClass("errormessagelarge").append(n("<p/>").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. "+(e||""))).append(n("<pre/>").text(JSON.stringify(t,null,4)))}});e.default={View:_}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(4),a=function(t){return t&&t.__esModule?t:{default:t}}(r);e.default=t.Model.extend({initialize:function(){this.active={},this.last=null},execute:function(t){var e=this,i=a.default.uid(),r=t.length>0;this.active[i]=!0;var o=n.Deferred();o.promise().always(function(){delete e.active[i],r&&Galaxy.emit.debug("deferred::execute()",this.state().charAt(0).toUpperCase()+this.state().slice(1)+" "+i)}),n.when(this.last).always(function(){e.active[i]?(r&&Galaxy.emit.debug("deferred::execute()","Running "+i),t(o),!r&&o.resolve()):o.reject()}),this.last=o.promise()},reset:function(){Galaxy.emit.debug("deferred::execute()","Reset");for(var t in this.active)this.active[t]=!1},ready:function(){return n.isEmptyObject(this.active)}})}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(4),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=t.View.extend({initialize:function(t){this.options=a.default.merge(t,{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:"ui-table",selectable:!0,cls_tr:""}),this.setElement(this._template()),this.$thead=this.$("thead"),this.$tbody=this.$("tbody"),this.$tmessage=this.$("tmessage"),this.row=this._row(),this.row_count=0},events:{click:"_onclick",dblclick:"_ondblclick"},addHeader:function(t){this.row.append(n("<th/>").append(t))},appendHeader:function(){this.$thead.append(this.row),this.row=n("<tr/>")},add:function(t,e,i){var r=n("<td/>");e&&r.css("width",e),i&&r.css("text-align",i),this.row.append(r.append(t))},append:function(t,e){this._commit(t,e,!1)},prepend:function(t,e){this._commit(t,e,!0)},get:function(t){return this.$("#"+t)},del:function(t){var e=this.$tbody.find("#"+t);e.length>0&&(e.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(t){if(this.options.selectable){this.before=this.$tbody.find(".current").attr("id"),void 0!==t&&(this.$tbody.find("tr").removeClass("current"),t&&this.$tbody.find("#"+t).addClass("current"));var e=this.$tbody.find(".current").attr("id");return void 0===e?null:(e!=this.before&&this.options.onchange&&this.options.onchange(t),e)}},size:function(){return this.$tbody.find("tr").length},_commit:function(t,e,i){this.del(t),this.row.attr("id",t),i?this.$tbody.prepend(this.row):this.$tbody.append(this.row),e&&(this.row.hide(),this.row.fadeIn()),this.row=this._row(),this.row_count++,this._refresh()},_row:function(){return n('<tr class="'+this.options.cls_tr+'"></tr>')},_onclick:function(t){var e=this.value(),i=n(t.target).closest("tr").attr("id");""!=i&&i&&e!=i&&(this.options.onconfirm?this.options.onconfirm(i):this.value(i))},_ondblclick:function(t){var e=this.value();e&&this.options.ondblclick&&this.options.ondblclick(e)},_refresh:function(){0==this.row_count?this.$tmessage.show():this.$tmessage.hide()},_template:function(){return'<div><table class="'+this.options.cls+'"><thead/><tbody/></table><tmessage>'+this.options.content+"</tmessage><div>"}});e.default={View:o}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(4),o=r(a),s=i(38),l=r(s),u=i(6),c=r(u),h=t.View.extend({initialize:function(t){var e=this;this.options=t,this.name=t.name||"element",this.multiple=t.multiple||!1,this.message=new c.default.Message,this.portlet=new l.default.View({cls:"ui-portlet-section"}),this.select=new c.default.Select.View({optional:t.optional}),this.button=new 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i=n.prop("readonly");i===e&&(i=!1),this.readonly(i),_(this.container,this.opts.element,this.opts.adaptContainerCssClass),this.container.addClass(S(this.opts.containerCssClass,this.opts.element)),_(this.dropdown,this.opts.element,this.opts.adaptDropdownCssClass),this.dropdown.addClass(S(this.opts.dropdownCssClass,this.opts.element))}),n.length&&n[0].attachEvent&&n.each(function(){this.attachEvent("onpropertychange",r._sync)}),(i=window.MutationObserver||window.WebKitMutationObserver||window.MozMutationObserver)!==e&&(this.propertyObserver&&(delete this.propertyObserver,this.propertyObserver=null),this.propertyObserver=new i(function(e){t.each(e,r._sync)}),this.propertyObserver.observe(n.get(0),{attributes:!0,subtree:!1}))},triggerSelect:function(e){var i=t.Event("select2-selecting",{val:this.id(e),object:e,choice:e});return this.opts.element.trigger(i),!i.isDefaultPrevented()},triggerChange:function(e){e=e||{},e=t.extend({},e,{type:"change",val:this.val()}),this.opts.element.data("select2-change-triggered",!0),this.opts.element.trigger(e),this.opts.element.data("select2-change-triggered",!1),this.opts.element.click(),this.opts.blurOnChange&&this.opts.element.blur()},isInterfaceEnabled:function(){return!0===this.enabledInterface},enableInterface:function(){var t=this._enabled&&!this._readonly,e=!t;return t!==this.enabledInterface&&(this.container.toggleClass("select2-container-disabled",e),this.close(),this.enabledInterface=t,!0)},enable:function(t){t===e&&(t=!0),this._enabled!==t&&(this._enabled=t,this.opts.element.prop("disabled",!t),this.enableInterface())},disable:function(){this.enable(!1)},readonly:function(t){t===e&&(t=!1),this._readonly!==t&&(this._readonly=t,this.opts.element.prop("readonly",t),this.enableInterface())},opened:function(){return!!this.container&&this.container.hasClass("select2-dropdown-open")},positionDropdown:function(){var e,i,n,r,a,o=this.dropdown,s=this.container.offset(),l=this.container.outerHeight(!1),u=this.container.outerWidth(!1),c=o.outerHeight(!1),h=t(window),d=h.width(),f=h.height(),p=h.scrollLeft()+d,m=h.scrollTop()+f,g=s.top+l,v=s.left,_=g+c<=m,y=s.top-c>=h.scrollTop(),b=o.outerWidth(!1),w=v+b<=p,x=o.hasClass("select2-drop-above");x?(i=!0,!y&&_&&(n=!0,i=!1)):(i=!1,!_&&y&&(n=!0,i=!0)),n&&(o.hide(),s=this.container.offset(),l=this.container.outerHeight(!1),u=this.container.outerWidth(!1),c=o.outerHeight(!1),p=h.scrollLeft()+d,m=h.scrollTop()+f,g=s.top+l,v=s.left,b=o.outerWidth(!1),w=v+b<=p,o.show(),this.focusSearch()),this.opts.dropdownAutoWidth?(a=t(".select2-results",o)[0],o.addClass("select2-drop-auto-width"),o.css("width",""),b=o.outerWidth(!1)+(a.scrollHeight===a.clientHeight?0:N.width),b>u?u=b:b=u,c=o.outerHeight(!1),w=v+b<=p):this.container.removeClass("select2-drop-auto-width"),"static"!==this.body.css("position")&&(e=this.body.offset(),g-=e.top,v-=e.left),w||(v=s.left+this.container.outerWidth(!1)-b),r={left:v,width:u},i?(r.top=s.top-c,r.bottom="auto",this.container.addClass("select2-drop-above"),o.addClass("select2-drop-above")):(r.top=g,r.bottom="auto",this.container.removeClass("select2-drop-above"),o.removeClass("select2-drop-above")),r=t.extend(r,S(this.opts.dropdownCss,this.opts.element)),o.css(r)},shouldOpen:function(){var e;return!this.opened()&&(!1!==this._enabled&&!0!==this._readonly&&(e=t.Event("select2-opening"),this.opts.element.trigger(e),!e.isDefaultPrevented()))},clearDropdownAlignmentPreference:function(){this.container.removeClass("select2-drop-above"),this.dropdown.removeClass("select2-drop-above")},open:function(){return!!this.shouldOpen()&&(this.opening(),I.on("mousemove.select2Event",function(t){L.x=t.pageX,L.y=t.pageY}),!0)},opening:function(){var e,n=this.containerEventName,r="scroll."+n,a="resize."+n,o="orientationchange."+n;this.container.addClass("select2-dropdown-open").addClass("select2-container-active"),this.clearDropdownAlignmentPreference(),this.dropdown[0]!==this.body.children().last()[0]&&this.dropdown.detach().appendTo(this.body),e=t("#select2-drop-mask"),0==e.length&&(e=t(document.createElement("div")),e.attr("id","select2-drop-mask").attr("class","select2-drop-mask"),e.hide(),e.appendTo(this.body),e.on("mousedown touchstart click",function(n){i(e);var r,a=t("#select2-drop");a.length>0&&(r=a.data("select2"),r.opts.selectOnBlur&&r.selectHighlighted({noFocus:!0}),r.close(),n.preventDefault(),n.stopPropagation())})),this.dropdown.prev()[0]!==e[0]&&this.dropdown.before(e),t("#select2-drop").removeAttr("id"),this.dropdown.attr("id","select2-drop"),e.show(),this.positionDropdown(),this.dropdown.show(),this.positionDropdown(),this.dropdown.addClass("select2-drop-active");var s=this;this.container.parents().add(window).each(function(){t(this).on(a+" "+r+" "+o,function(t){s.opened()&&s.positionDropdown()})})},close:function(){if(this.opened()){var e=this.containerEventName,i="scroll."+e,n="resize."+e,r="orientationchange."+e;this.container.parents().add(window).each(function(){t(this).off(i).off(n).off(r)}),this.clearDropdownAlignmentPreference(),t("#select2-drop-mask").hide(),this.dropdown.removeAttr("id"),this.dropdown.hide(),this.container.removeClass("select2-dropdown-open").removeClass("select2-container-active"),this.results.empty(),I.off("mousemove.select2Event"),this.clearSearch(),this.search.removeClass("select2-active"),this.opts.element.trigger(t.Event("select2-close"))}},externalSearch:function(t){this.open(),this.search.val(t),this.updateResults(!1)},clearSearch:function(){},getMaximumSelectionSize:function(){return S(this.opts.maximumSelectionSize,this.opts.element)},ensureHighlightVisible:function(){var e,i,n,r,a,o,s,l,u=this.results;if(!((i=this.highlight())<0)){if(0==i)return void u.scrollTop(0);e=this.findHighlightableChoices().find(".select2-result-label"),n=t(e[i]),l=(n.offset()||{}).top||0,r=l+n.outerHeight(!0),i===e.length-1&&(s=u.find("li.select2-more-results"),s.length>0&&(r=s.offset().top+s.outerHeight(!0))),a=u.offset().top+u.outerHeight(!0),r>a&&u.scrollTop(u.scrollTop()+(r-a)),o=l-u.offset().top,o<0&&"none"!=n.css("display")&&u.scrollTop(u.scrollTop()+o)}},findHighlightableChoices:function(){return this.results.find(".select2-result-selectable:not(.select2-disabled):not(.select2-selected)")},moveHighlight:function(e){for(var i=this.findHighlightableChoices(),n=this.highlight();n>-1&&n<i.length;){n+=e;var r=t(i[n]);if(r.hasClass("select2-result-selectable")&&!r.hasClass("select2-disabled")&&!r.hasClass("select2-selected")){this.highlight(n);break}}},highlight:function(e){var i,n,a=this.findHighlightableChoices();if(0===arguments.length)return r(a.filter(".select2-highlighted")[0],a.get());e>=a.length&&(e=a.length-1),e<0&&(e=0),this.removeHighlight(),i=t(a[e]),i.addClass("select2-highlighted"),this.search.attr("aria-activedescendant",i.find(".select2-result-label").attr("id")),this.ensureHighlightVisible(),this.liveRegion.text(i.text()),(n=i.data("select2-data"))&&this.opts.element.trigger({type:"select2-highlight",val:this.id(n),choice:n})},removeHighlight:function(){this.results.find(".select2-highlighted").removeClass("select2-highlighted")},touchMoved:function(){this._touchMoved=!0},clearTouchMoved:function(){this._touchMoved=!1},countSelectableResults:function(){return this.findHighlightableChoices().length},highlightUnderEvent:function(e){var i=t(e.target).closest(".select2-result-selectable");if(i.length>0&&!i.is(".select2-highlighted")){var n=this.findHighlightableChoices();this.highlight(n.index(i))}else 0==i.length&&this.removeHighlight()},loadMoreIfNeeded:function(){var t=this.results,e=t.find("li.select2-more-results"),i=this.resultsPage+1,n=this,r=this.search.val(),a=this.context;0!==e.length&&e.offset().top-t.offset().top-t.height()<=this.opts.loadMorePadding&&(e.addClass("select2-active"),this.opts.query({element:this.opts.element,term:r,page:i,context:a,matcher:this.opts.matcher,callback:this.bind(function(o){n.opened()&&(n.opts.populateResults.call(this,t,o.results,{term:r,page:i,context:a}),n.postprocessResults(o,!1,!1),!0===o.more?(e.detach().appendTo(t).text(S(n.opts.formatLoadMore,n.opts.element,i+1)),window.setTimeout(function(){n.loadMoreIfNeeded()},10)):e.remove(),n.positionDropdown(),n.resultsPage=i,n.context=o.context,this.opts.element.trigger({type:"select2-loaded",items:o}))})}))},tokenize:function(){},updateResults:function(i){function n(){u.removeClass("select2-active"),d.positionDropdown(),c.find(".select2-no-results,.select2-selection-limit,.select2-searching").length?d.liveRegion.text(c.text()):d.liveRegion.text(d.opts.formatMatches(c.find(".select2-result-selectable").length))}function r(t){c.html(t),n()}var a,s,l,u=this.search,c=this.results,h=this.opts,d=this,f=u.val(),p=t.data(this.container,"select2-last-term");if((!0===i||!p||!o(f,p))&&(t.data(this.container,"select2-last-term",f),!0===i||!1!==this.showSearchInput&&this.opened())){l=++this.queryCount;var m=this.getMaximumSelectionSize();if(m>=1&&(a=this.data(),t.isArray(a)&&a.length>=m&&k(h.formatSelectionTooBig,"formatSelectionTooBig")))return void r("<li class='select2-selection-limit'>"+S(h.formatSelectionTooBig,h.element,m)+"</li>");if(u.val().length<h.minimumInputLength)return r(k(h.formatInputTooShort,"formatInputTooShort")?"<li class='select2-no-results'>"+S(h.formatInputTooShort,h.element,u.val(),h.minimumInputLength)+"</li>":""),void(i&&this.showSearch&&this.showSearch(!0));if(h.maximumInputLength&&u.val().length>h.maximumInputLength)return void r(k(h.formatInputTooLong,"formatInputTooLong")?"<li class='select2-no-results'>"+S(h.formatInputTooLong,h.element,u.val(),h.maximumInputLength)+"</li>":"");h.formatSearching&&0===this.findHighlightableChoices().length&&r("<li class='select2-searching'>"+S(h.formatSearching,h.element)+"</li>"),u.addClass("select2-active"),this.removeHighlight(),s=this.tokenize(),s!=e&&null!=s&&u.val(s),this.resultsPage=1,h.query({element:h.element,term:u.val(),page:this.resultsPage,context:null,matcher:h.matcher,callback:this.bind(function(a){var s;if(l==this.queryCount){if(!this.opened())return void this.search.removeClass("select2-active");if(a.hasError!==e&&k(h.formatAjaxError,"formatAjaxError"))return void r("<li class='select2-ajax-error'>"+S(h.formatAjaxError,h.element,a.jqXHR,a.textStatus,a.errorThrown)+"</li>");if(this.context=a.context===e?null:a.context,this.opts.createSearchChoice&&""!==u.val()&&(s=this.opts.createSearchChoice.call(d,u.val(),a.results))!==e&&null!==s&&d.id(s)!==e&&null!==d.id(s)&&0===t(a.results).filter(function(){return o(d.id(this),d.id(s))}).length&&this.opts.createSearchChoicePosition(a.results,s),0===a.results.length&&k(h.formatNoMatches,"formatNoMatches"))return void r("<li class='select2-no-results'>"+S(h.formatNoMatches,h.element,u.val())+"</li>");c.empty(),d.opts.populateResults.call(this,c,a.results,{term:u.val(),page:this.resultsPage,context:null}),!0===a.more&&k(h.formatLoadMore,"formatLoadMore")&&(c.append("<li class='select2-more-results'>"+h.escapeMarkup(S(h.formatLoadMore,h.element,this.resultsPage))+"</li>"),window.setTimeout(function(){d.loadMoreIfNeeded()},10)),this.postprocessResults(a,i),n(),this.opts.element.trigger({type:"select2-loaded",items:a})}})})}},cancel:function(){this.close()},blur:function(){this.opts.selectOnBlur&&this.selectHighlighted({noFocus:!0}),this.close(),this.container.removeClass("select2-container-active"),this.search[0]===document.activeElement&&this.search.blur(),this.clearSearch(),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus")},focusSearch:function(){f(this.search)},selectHighlighted:function(t){if(this._touchMoved)return void this.clearTouchMoved();var e=this.highlight(),i=this.results.find(".select2-highlighted"),n=i.closest(".select2-result").data("select2-data");n?(this.highlight(e),this.onSelect(n,t)):t&&t.noFocus&&this.close()},getPlaceholder:function(){var t;return this.opts.element.attr("placeholder")||this.opts.element.attr("data-placeholder")||this.opts.element.data("placeholder")||this.opts.placeholder||((t=this.getPlaceholderOption())!==e?t.text():e)},getPlaceholderOption:function(){if(this.select){var i=this.select.children("option").first();if(this.opts.placeholderOption!==e)return"first"===this.opts.placeholderOption&&i||"function"==typeof this.opts.placeholderOption&&this.opts.placeholderOption(this.select);if(""===t.trim(i.text())&&""===i.val())return i}},initContainerWidth:function(){function i(){var i,n,r,a,o,s;if("off"===this.opts.width)return null;if("element"===this.opts.width)return 0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px";if("copy"===this.opts.width||"resolve"===this.opts.width){if((i=this.opts.element.attr("style"))!==e)for(n=i.split(";"),a=0,o=n.length;a<o;a+=1)if(s=n[a].replace(/\s/g,""),null!==(r=s.match(/^width:(([-+]?([0-9]*\.)?[0-9]+)(px|em|ex|%|in|cm|mm|pt|pc))/i))&&r.length>=1)return r[1];return"resolve"===this.opts.width?(i=this.opts.element.css("width"),i.indexOf("%")>0?i:0===this.opts.element.outerWidth(!1)?"auto":this.opts.element.outerWidth(!1)+"px"):null}return t.isFunction(this.opts.width)?this.opts.width():this.opts.width}var n=i.call(this);null!==n&&this.container.css("width",n)}}),D=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container"}).html(["<a href='javascript:void(0)' class='select2-choice' tabindex='-1'>","   <span class='select2-chosen'>&#160;</span><abbr class='select2-search-choice-close'></abbr>","   <span class='select2-arrow' role='presentation'><b role='presentation'></b></span>","</a>","<label for='' class='select2-offscreen'></label>","<input class='select2-focusser select2-offscreen' type='text' aria-haspopup='true' role='button' />","<div class='select2-drop select2-display-none'>","   <div class='select2-search'>","       <label for='' class='select2-offscreen'></label>","       <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input' role='combobox' aria-expanded='true'","       aria-autocomplete='list' />","   </div>","   <ul class='select2-results' role='listbox'>","   </ul>","</div>"].join(""))},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.focusser.prop("disabled",!this.isInterfaceEnabled())},opening:function(){var i,n,r;this.opts.minimumResultsForSearch>=0&&this.showSearch(!0),this.parent.opening.apply(this,arguments),!1!==this.showSearchInput&&this.search.val(this.focusser.val()),this.opts.shouldFocusInput(this)&&(this.search.focus(),i=this.search.get(0),i.createTextRange?(n=i.createTextRange(),n.collapse(!1),n.select()):i.setSelectionRange&&(r=this.search.val().length,i.setSelectionRange(r,r))),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.focusser.prop("disabled",!0).val(""),this.updateResults(!0),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&(this.parent.close.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},focus:function(){this.opened()?this.close():(this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus())},isFocused:function(){return this.container.hasClass("select2-container-active")},cancel:function(){this.parent.cancel.apply(this,arguments),this.focusser.prop("disabled",!1),this.opts.shouldFocusInput(this)&&this.focusser.focus()},destroy:function(){t("label[for='"+this.focusser.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),M.call(this,"selection","focusser")},initContainer:function(){var e,n,r=this.container,a=this.dropdown,o=P();this.opts.minimumResultsForSearch<0?this.showSearch(!1):this.showSearch(!0),this.selection=e=r.find(".select2-choice"),this.focusser=r.find(".select2-focusser"),e.find(".select2-chosen").attr("id","select2-chosen-"+o),this.focusser.attr("aria-labelledby","select2-chosen-"+o),this.results.attr("id","select2-results-"+o),this.search.attr("aria-owns","select2-results-"+o),this.focusser.attr("id","s2id_autogen"+o),n=t("label[for='"+this.opts.element.attr("id")+"']"),this.focusser.prev().text(n.text()).attr("for",this.focusser.attr("id"));var s=this.opts.element.attr("title");this.opts.element.attr("title",s||n.text()),this.focusser.attr("tabindex",this.elementTabIndex),this.search.attr("id",this.focusser.attr("id")+"_search"),this.search.prev().text(t("label[for='"+this.focusser.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&229!=t.keyCode){if(t.which===O.PAGE_UP||t.which===O.PAGE_DOWN)return void m(t);switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void m(t);case O.ENTER:return this.selectHighlighted(),void m(t);case O.TAB:return void this.selectHighlighted({noFocus:!0});case O.ESC:return this.cancel(t),void m(t)}}})),this.search.on("blur",this.bind(function(t){document.activeElement===this.body.get(0)&&window.setTimeout(this.bind(function(){this.opened()&&this.search.focus()}),0)})),this.focusser.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()&&t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.ESC){if(!1===this.opts.openOnEnter&&t.which===O.ENTER)return void m(t);if(t.which==O.DOWN||t.which==O.UP||t.which==O.ENTER&&this.opts.openOnEnter){if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return;return this.open(),void m(t)}return t.which==O.DELETE||t.which==O.BACKSPACE?(this.opts.allowClear&&this.clear(),void m(t)):void 0}})),u(this.focusser),this.focusser.on("keyup-change input",this.bind(function(t){if(this.opts.minimumResultsForSearch>=0){if(t.stopPropagation(),this.opened())return;this.open()}})),e.on("mousedown touchstart","abbr",this.bind(function(t){this.isInterfaceEnabled()&&(this.clear(),g(t),this.close(),this.selection.focus())})),e.on("mousedown touchstart",this.bind(function(n){i(e),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.opened()?this.close():this.isInterfaceEnabled()&&this.open(),m(n)})),a.on("mousedown touchstart",this.bind(function(){this.opts.shouldFocusInput(this)&&this.search.focus()})),e.on("focus",this.bind(function(t){m(t)})),this.focusser.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})).on("blur",this.bind(function(){this.opened()||(this.container.removeClass("select2-container-active"),this.opts.element.trigger(t.Event("select2-blur")))})),this.search.on("focus",this.bind(function(){this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active")})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.setPlaceholder()},clear:function(e){var i=this.selection.data("select2-data");if(i){var n=t.Event("select2-clearing");if(this.opts.element.trigger(n),n.isDefaultPrevented())return;var r=this.getPlaceholderOption();this.opts.element.val(r?r.val():""),this.selection.find(".select2-chosen").empty(),this.selection.removeData("select2-data"),this.setPlaceholder(),!1!==e&&(this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}))}},initSelection:function(){if(this.isPlaceholderOptionSelected())this.updateSelection(null),this.close(),this.setPlaceholder();else{var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.setPlaceholder(),t.nextSearchTerm=t.opts.nextSearchTerm(i,t.search.val()))})}},isPlaceholderOptionSelected:function(){var t;return this.getPlaceholder()!==e&&((t=this.getPlaceholderOption())!==e&&t.prop("selected")||""===this.opts.element.val()||this.opts.element.val()===e||null===this.opts.element.val())},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=t.find("option").filter(function(){return this.selected&&!this.disabled});e(i.optionToData(n))}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=i.val(),a=null;e.query({matcher:function(t,i,n){var s=o(r,e.id(n));return s&&(a=n),s},callback:t.isFunction(n)?function(){n(a)}:t.noop})}),e},getPlaceholder:function(){return this.select&&this.getPlaceholderOption()===e?e:this.parent.getPlaceholder.apply(this,arguments)},setPlaceholder:function(){var t=this.getPlaceholder();if(this.isPlaceholderOptionSelected()&&t!==e){if(this.select&&this.getPlaceholderOption()===e)return;this.selection.find(".select2-chosen").html(this.opts.escapeMarkup(t)),this.selection.addClass("select2-default"),this.container.removeClass("select2-allowclear")}},postprocessResults:function(t,e,i){var n=0,r=this;if(this.findHighlightableChoices().each2(function(t,e){if(o(r.id(e.data("select2-data")),r.opts.element.val()))return n=t,!1}),!1!==i&&(!0===e&&n>=0?this.highlight(n):this.highlight(0)),!0===e){var a=this.opts.minimumResultsForSearch;a>=0&&this.showSearch(T(t.results)>=a)}},showSearch:function(e){this.showSearchInput!==e&&(this.showSearchInput=e,this.dropdown.find(".select2-search").toggleClass("select2-search-hidden",!e),this.dropdown.find(".select2-search").toggleClass("select2-offscreen",!e),t(this.dropdown,this.container).toggleClass("select2-with-searchbox",e))},onSelect:function(t,e){if(this.triggerSelect(t)){var i=this.opts.element.val(),n=this.data();this.opts.element.val(this.id(t)),this.updateSelection(t),this.opts.element.trigger({type:"select2-selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.close(),e&&e.noFocus||!this.opts.shouldFocusInput(this)||this.focusser.focus(),o(i,this.id(t))||this.triggerChange({added:t,removed:n})}},updateSelection:function(t){var i,n,r=this.selection.find(".select2-chosen");this.selection.data("select2-data",t),r.empty(),null!==t&&(i=this.opts.formatSelection(t,r,this.opts.escapeMarkup)),i!==e&&r.append(i),n=this.opts.formatSelectionCssClass(t,r),n!==e&&r.addClass(n),this.selection.removeClass("select2-default"),this.opts.allowClear&&this.getPlaceholder()!==e&&this.container.addClass("select2-allowclear")},val:function(){var t,i=!1,n=null,r=this,a=this.data();if(0===arguments.length)return this.opts.element.val();if(t=arguments[0],arguments.length>1&&(i=arguments[1]),this.select)this.select.val(t).find("option").filter(function(){return this.selected}).each2(function(t,e){return n=r.optionToData(e),!1}),this.updateSelection(n),this.setPlaceholder(),i&&this.triggerChange({added:n,removed:a});else{if(!t&&0!==t)return void this.clear(i);if(this.opts.initSelection===e)throw new Error("cannot call val() if initSelection() is not defined");this.opts.element.val(t),this.opts.initSelection(this.opts.element,function(t){r.opts.element.val(t?r.id(t):""),r.updateSelection(t),r.setPlaceholder(),i&&r.triggerChange({added:t,removed:a})})}},clearSearch:function(){this.search.val(""),this.focusser.val("")},data:function(t){var i,n=!1;if(0===arguments.length)return i=this.selection.data("select2-data"),i==e&&(i=null),i;arguments.length>1&&(n=arguments[1]),t?(i=this.data(),this.opts.element.val(t?this.id(t):""),this.updateSelection(t),n&&this.triggerChange({added:t,removed:i})):this.clear(n)}}),j=E($,{createContainer:function(){return t(document.createElement("div")).attr({class:"select2-container select2-container-multi"}).html(["<ul class='select2-choices'>","  <li class='select2-search-field'>","    <label for='' class='select2-offscreen'></label>","    <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input'>","  </li>","</ul>","<div class='select2-drop select2-drop-multi select2-display-none'>","   <ul class='select2-results'>","   </ul>","</div>"].join(""))},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),i=this;return"select"===e.element.get(0).tagName.toLowerCase()?e.initSelection=function(t,e){var n=[];t.find("option").filter(function(){return this.selected&&!this.disabled}).each2(function(t,e){n.push(i.optionToData(e))}),e(n)}:"data"in e&&(e.initSelection=e.initSelection||function(i,n){var r=s(i.val(),e.separator),a=[];e.query({matcher:function(i,n,s){var l=t.grep(r,function(t){return o(t,e.id(s))}).length;return l&&a.push(s),l},callback:t.isFunction(n)?function(){for(var t=[],i=0;i<r.length;i++)for(var s=r[i],l=0;l<a.length;l++){var u=a[l];if(o(s,e.id(u))){t.push(u),a.splice(l,1);break}}n(t)}:t.noop})}),e},selectChoice:function(t){var e=this.container.find(".select2-search-choice-focus");e.length&&t&&t[0]==e[0]||(e.length&&this.opts.element.trigger("choice-deselected",e),e.removeClass("select2-search-choice-focus"),t&&t.length&&(this.close(),t.addClass("select2-search-choice-focus"),this.opts.element.trigger("choice-selected",t)))},destroy:function(){t("label[for='"+this.search.attr("id")+"']").attr("for",this.opts.element.attr("id")),this.parent.destroy.apply(this,arguments),M.call(this,"searchContainer","selection")},initContainer:function(){var e,i=".select2-choices";this.searchContainer=this.container.find(".select2-search-field"),this.selection=e=this.container.find(i);var n=this;this.selection.on("click",".select2-search-choice:not(.select2-locked)",function(e){n.search[0].focus(),n.selectChoice(t(this))}),this.search.attr("id","s2id_autogen"+P()),this.search.prev().text(t("label[for='"+this.opts.element.attr("id")+"']").text()).attr("for",this.search.attr("id")),this.search.on("input paste",this.bind(function(){this.search.attr("placeholder")&&0==this.search.val().length||this.isInterfaceEnabled()&&(this.opened()||this.open())})),this.search.attr("tabindex",this.elementTabIndex),this.keydowns=0,this.search.on("keydown",this.bind(function(t){if(this.isInterfaceEnabled()){++this.keydowns;var i=e.find(".select2-search-choice-focus"),n=i.prev(".select2-search-choice:not(.select2-locked)"),r=i.next(".select2-search-choice:not(.select2-locked)"),a=p(this.search);if(i.length&&(t.which==O.LEFT||t.which==O.RIGHT||t.which==O.BACKSPACE||t.which==O.DELETE||t.which==O.ENTER)){var o=i;return t.which==O.LEFT&&n.length?o=n:t.which==O.RIGHT?o=r.length?r:null:t.which===O.BACKSPACE?this.unselect(i.first())&&(this.search.width(10),o=n.length?n:r):t.which==O.DELETE?this.unselect(i.first())&&(this.search.width(10),o=r.length?r:null):t.which==O.ENTER&&(o=null),this.selectChoice(o),m(t),void(o&&o.length||this.open())}if((t.which===O.BACKSPACE&&1==this.keydowns||t.which==O.LEFT)&&0==a.offset&&!a.length)return this.selectChoice(e.find(".select2-search-choice:not(.select2-locked)").last()),void m(t);if(this.selectChoice(null),this.opened())switch(t.which){case O.UP:case O.DOWN:return this.moveHighlight(t.which===O.UP?-1:1),void m(t);case O.ENTER:return this.selectHighlighted(),void m(t);case O.TAB:return this.selectHighlighted({noFocus:!0}),void this.close();case O.ESC:return this.cancel(t),void m(t)}if(t.which!==O.TAB&&!O.isControl(t)&&!O.isFunctionKey(t)&&t.which!==O.BACKSPACE&&t.which!==O.ESC){if(t.which===O.ENTER){if(!1===this.opts.openOnEnter)return;if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return}this.open(),t.which!==O.PAGE_UP&&t.which!==O.PAGE_DOWN||m(t),t.which===O.ENTER&&m(t)}}})),this.search.on("keyup",this.bind(function(t){this.keydowns=0,this.resizeSearch()})),this.search.on("blur",this.bind(function(e){this.container.removeClass("select2-container-active"),this.search.removeClass("select2-focused"),this.selectChoice(null),this.opened()||this.clearSearch(),e.stopImmediatePropagation(),this.opts.element.trigger(t.Event("select2-blur"))})),this.container.on("click",i,this.bind(function(e){this.isInterfaceEnabled()&&(t(e.target).closest(".select2-search-choice").length>0||(this.selectChoice(null),this.clearPlaceholder(),this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.open(),this.focusSearch(),e.preventDefault()))})),this.container.on("focus",i,this.bind(function(){this.isInterfaceEnabled()&&(this.container.hasClass("select2-container-active")||this.opts.element.trigger(t.Event("select2-focus")),this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"),this.clearPlaceholder())})),this.initContainerWidth(),this.opts.element.addClass("select2-offscreen"),this.clearSearch()},enableInterface:function(){this.parent.enableInterface.apply(this,arguments)&&this.search.prop("disabled",!this.isInterfaceEnabled())},initSelection:function(){if(""===this.opts.element.val()&&""===this.opts.element.text()&&(this.updateSelection([]),this.close(),this.clearSearch()),this.select||""!==this.opts.element.val()){var t=this;this.opts.initSelection.call(null,this.opts.element,function(i){i!==e&&null!==i&&(t.updateSelection(i),t.close(),t.clearSearch())})}},clearSearch:function(){var t=this.getPlaceholder(),i=this.getMaxSearchWidth();t!==e&&0===this.getVal().length&&!1===this.search.hasClass("select2-focused")?(this.search.val(t).addClass("select2-default"),this.search.width(i>0?i:this.container.css("width"))):this.search.val("").width(10)},clearPlaceholder:function(){this.search.hasClass("select2-default")&&this.search.val("").removeClass("select2-default")},opening:function(){this.clearPlaceholder(),this.resizeSearch(),this.parent.opening.apply(this,arguments),this.focusSearch(),""===this.search.val()&&this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.search.select()),this.updateResults(!0),this.opts.shouldFocusInput(this)&&this.search.focus(),this.opts.element.trigger(t.Event("select2-open"))},close:function(){this.opened()&&this.parent.close.apply(this,arguments)},focus:function(){this.close(),this.search.focus()},isFocused:function(){return this.search.hasClass("select2-focused")},updateSelection:function(e){var i=[],n=[],a=this;t(e).each(function(){r(a.id(this),i)<0&&(i.push(a.id(this)),n.push(this))}),e=n,this.selection.find(".select2-search-choice").remove(),t(e).each(function(){a.addSelectedChoice(this)}),a.postprocessResults()},tokenize:function(){var t=this.search.val();null!=(t=this.opts.tokenizer.call(this,t,this.data(),this.bind(this.onSelect),this.opts))&&t!=e&&(this.search.val(t),t.length>0&&this.open())},onSelect:function(t,i){this.triggerSelect(t)&&""!==t.text&&(this.addSelectedChoice(t),this.opts.element.trigger({type:"selected",val:this.id(t),choice:t}),this.nextSearchTerm=this.opts.nextSearchTerm(t,this.search.val()),this.moveHighlight(1),!this.select&&this.opts.closeOnSelect||this.postprocessResults(t,!1,!0===this.opts.closeOnSelect),this.opts.closeOnSelect?(this.clearSearch(),this.updateResults(),this.close(),this.search.width(10)):this.countSelectableResults()>0?(this.search.width(10),this.resizeSearch(),this.getMaximumSelectionSize()>0&&this.val().length>=this.getMaximumSelectionSize()?this.updateResults(!0):this.nextSearchTerm!=e&&(this.search.val(this.nextSearchTerm),this.updateResults(),this.search.select()),this.positionDropdown()):(this.close(),this.search.width(10)),this.triggerChange({added:t}),i&&i.noFocus||this.focusSearch())},cancel:function(){this.close(),this.focusSearch()},addSelectedChoice:function(i){var n,r,a=!i.locked,o=t("<li class='select2-search-choice'>    <div></div>    <a href='#' class='select2-search-choice-close' tabindex='-1'></a></li>"),s=t("<li class='select2-search-choice select2-locked'><div></div></li>"),l=a?o:s,u=this.id(i),c=this.getVal();n=this.opts.formatSelection(i,l.find("div"),this.opts.escapeMarkup),n!=e&&l.find("div").replaceWith("<div>"+n+"</div>"),r=this.opts.formatSelectionCssClass(i,l.find("div")),r!=e&&l.addClass(r),a&&l.find(".select2-search-choice-close").on("mousedown",m).on("click dblclick",this.bind(function(e){this.isInterfaceEnabled()&&(this.unselect(t(e.target)),this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus"),m(e),this.close(),this.focusSearch())})).on("focus",this.bind(function(){this.isInterfaceEnabled()&&(this.container.addClass("select2-container-active"),this.dropdown.addClass("select2-drop-active"))})),l.data("select2-data",i),l.insertBefore(this.searchContainer),c.push(u),this.setVal(c)},unselect:function(e){var i,n,a=this.getVal();if(e=e.closest(".select2-search-choice"),0===e.length)throw"Invalid argument: "+e+". Must be .select2-search-choice";if(i=e.data("select2-data")){var o=t.Event("select2-removing");if(o.val=this.id(i),o.choice=i,this.opts.element.trigger(o),o.isDefaultPrevented())return!1;for(;(n=r(this.id(i),a))>=0;)a.splice(n,1),this.setVal(a),this.select&&this.postprocessResults();return e.remove(),this.opts.element.trigger({type:"select2-removed",val:this.id(i),choice:i}),this.triggerChange({removed:i}),!0}},postprocessResults:function(t,e,i){var n=this.getVal(),a=this.results.find(".select2-result"),o=this.results.find(".select2-result-with-children"),s=this;a.each2(function(t,e){r(s.id(e.data("select2-data")),n)>=0&&(e.addClass("select2-selected"),e.find(".select2-result-selectable").addClass("select2-selected"))}),o.each2(function(t,e){e.is(".select2-result-selectable")||0!==e.find(".select2-result-selectable:not(.select2-selected)").length||e.addClass("select2-selected")}),-1==this.highlight()&&!1!==i&&s.highlight(0),!this.opts.createSearchChoice&&!a.filter(".select2-result:not(.select2-selected)").length>0&&(!t||t&&!t.more&&0===this.results.find(".select2-no-results").length)&&k(s.opts.formatNoMatches,"formatNoMatches")&&this.results.append("<li class='select2-no-results'>"+S(s.opts.formatNoMatches,s.opts.element,s.search.val())+"</li>")},getMaxSearchWidth:function(){return this.selection.width()-l(this.search)},resizeSearch:function(){var t,e,i,n,r,a=l(this.search);t=v(this.search)+10,e=this.search.offset().left,i=this.selection.width(),n=this.selection.offset().left,r=i-(e-n)-a,r<t&&(r=i-a),r<40&&(r=i-a),r<=0&&(r=t),this.search.width(Math.floor(r))},getVal:function(){var t;return this.select?(t=this.select.val(),null===t?[]:t):(t=this.opts.element.val(),s(t,this.opts.separator))},setVal:function(e){var i;this.select?this.select.val(e):(i=[],t(e).each(function(){r(this,i)<0&&i.push(this)}),this.opts.element.val(0===i.length?"":i.join(this.opts.separator)))},buildChangeDetails:function(t,e){for(var e=e.slice(0),t=t.slice(0),i=0;i<e.length;i++)for(var n=0;n<t.length;n++)o(this.opts.id(e[i]),this.opts.id(t[n]))&&(e.splice(i,1),i>0&&i--,t.splice(n,1),n--);return{added:e,removed:t}},val:function(i,n){var r,a=this;if(0===arguments.length)return this.getVal();if(r=this.data(),r.length||(r=[]),!i&&0!==i)return this.opts.element.val(""),this.updateSelection([]),this.clearSearch(),void(n&&this.triggerChange({added:this.data(),removed:r}));if(this.setVal(i),this.select)this.opts.initSelection(this.select,this.bind(this.updateSelection)),n&&this.triggerChange(this.buildChangeDetails(r,this.data()));else{if(this.opts.initSelection===e)throw new Error("val() cannot be called if initSelection() is not defined");this.opts.initSelection(this.opts.element,function(e){var i=t.map(e,a.id);a.setVal(i),a.updateSelection(e),a.clearSearch(),n&&a.triggerChange(a.buildChangeDetails(r,a.data()))})}this.clearSearch()},onSortStart:function(){if(this.select)throw new Error("Sorting of elements is not supported when attached to <select>. Attach to <input type='hidden'/> instead.");this.search.width(0),this.searchContainer.hide()},onSortEnd:function(){var e=[],i=this;this.searchContainer.show(),this.searchContainer.appendTo(this.searchContainer.parent()),this.resizeSearch(),this.selection.find(".select2-search-choice").each(function(){e.push(i.opts.id(t(this).data("select2-data")))}),this.setVal(e),this.triggerChange()},data:function(e,i){var n,r,a=this;if(0===arguments.length)return this.selection.children(".select2-search-choice").map(function(){return t(this).data("select2-data")}).get();r=this.data(),e||(e=[]),n=t.map(e,function(t){return a.opts.id(t)}),this.setVal(n),this.updateSelection(e),this.clearSearch(),i&&this.triggerChange(this.buildChangeDetails(r,this.data()))}}),t.fn.select2=function(){var i,n,a,o,s,l=Array.prototype.slice.call(arguments,0),u=["val","destroy","opened","open","close","focus","isFocused","container","dropdown","onSortStart","onSortEnd","enable","disable","readonly","positionDropdown","data","search"],c=["opened","isFocused","container","dropdown"],h=["val","data"],d={search:"externalSearch"};return this.each(function(){if(0===l.length||"object"==typeof l[0])i=0===l.length?{}:t.extend({},l[0]),i.element=t(this),"select"===i.element.get(0).tagName.toLowerCase()?s=i.element.prop("multiple"):(s=i.multiple||!1,"tags"in i&&(i.multiple=s=!0)),n=s?new window.Select2.class.multi:new window.Select2.class.single,n.init(i);else{if("string"!=typeof l[0])throw"Invalid arguments to select2 plugin: "+l;if(r(l[0],u)<0)throw"Unknown method: "+l[0];if(o=e,(n=t(this).data("select2"))===e)return;if(a=l[0],"container"===a?o=n.container:"dropdown"===a?o=n.dropdown:(d[a]&&(a=d[a]),o=n[a].apply(n,l.slice(1))),r(l[0],c)>=0||r(l[0],h)>=0&&1==l.length)return!1}}),o===e?this:o},t.fn.select2.defaults={width:"copy",loadMorePadding:0,closeOnSelect:!0,openOnEnter:!0,containerCss:{},dropdownCss:{},containerCssClass:"",dropdownCssClass:"",formatResult:function(t,e,i,n){var r=[];return y(t.text,i.term,r,n),r.join("")},formatSelection:function(t,i,n){return t?n(t.text):e},sortResults:function(t,e,i){return t},formatResultCssClass:function(t){return t.css},formatSelectionCssClass:function(t,i){return e},minimumResultsForSearch:0,minimumInputLength:0,maximumInputLength:null,maximumSelectionSize:0,id:function(t){return t==e?null:t.id},matcher:function(t,e){return n(""+e).toUpperCase().indexOf(n(""+t).toUpperCase())>=0},separator:",",tokenSeparators:[],tokenizer:A,escapeMarkup:b,blurOnChange:!1,selectOnBlur:!1,adaptContainerCssClass:function(t){return t},adaptDropdownCssClass:function(t){return null},nextSearchTerm:function(t,i){return e},searchInputPlaceholder:"",createSearchChoicePosition:"top",shouldFocusInput:function(t){return!(("ontouchstart"in window||navigator.msMaxTouchPoints>0)&&t.opts.minimumResultsForSearch<0)}},t.fn.select2.locales=[],t.fn.select2.locales.en={formatMatches:function(t){return 1===t?"One result is available, press enter to select it.":t+" results are available, use up and down arrow keys to navigate."},formatNoMatches:function(){return"No matches found"},formatAjaxError:function(t,e,i){return"Loading failed"},formatInputTooShort:function(t,e){var i=e-t.length;return"Please enter "+i+" or more character"+(1==i?"":"s")},formatInputTooLong:function(t,e){var i=t.length-e;return"Please delete "+i+" character"+(1==i?"":"s")},formatSelectionTooBig:function(t){return"You can only select "+t+" item"+(1==t?"":"s")},formatLoadMore:function(t){return"Loading more results…"},formatSearching:function(){return"Searching…"}},t.extend(t.fn.select2.defaults,t.fn.select2.locales.en),t.fn.select2.ajaxDefaults={transport:t.ajax,params:{type:"GET",cache:!1,dataType:"json"}},window.Select2={query:{ajax:w,local:x,tags:C},util:{debounce:h,markMatch:y,escapeMarkup:b,stripDiacritics:n},class:{abstract:$,single:D,multi:j}}}}(t)}).call(e,i(0))},function(t,e,i){(function(t){!function(t,e){var i,n;n=e.document,i=function(){function i(i){var n;try{n=e.localStorage}catch(t){n=!1}this._options=t.extend({name:"tour",steps:[],container:"body",autoscroll:!0,keyboard:!0,storage:n,debug:!1,backdrop:!1,backdropContainer:"body",backdropPadding:0,redirect:!0,orphan:!1,duration:!1,delay:!1,basePath:"",template:'<div class="popover" role="tooltip"> <div class="arrow"></div> <h3 class="popover-title"></h3> <div class="popover-content"></div> <div class="popover-navigation"> <div class="btn-group"> <button class="btn btn-sm btn-default" data-role="prev">&laquo; Prev</button> <button class="btn btn-sm btn-default" data-role="next">Next &raquo;</button> <button class="btn btn-sm btn-default" data-role="pause-resume" data-pause-text="Pause" data-resume-text="Resume">Pause</button> </div> <button class="btn btn-sm btn-default" data-role="end">End tour</button> </div> </div>',afterSetState:function(t,e){},afterGetState:function(t,e){},afterRemoveState:function(t){},onStart:function(t){},onEnd:function(t){},onShow:function(t){},onShown:function(t){},onHide:function(t){},onHidden:function(t){},onNext:function(t){},onPrev:function(t){},onPause:function(t,e){},onResume:function(t,e){},onRedirectError:function(t){}},i),this._force=!1,this._inited=!1,this._current=null,this.backdrop={overlay:null,$element:null,$background:null,backgroundShown:!1,overlayElementShown:!1}}return i.prototype.addSteps=function(t){var e,i,n;for(i=0,n=t.length;i<n;i++)e=t[i],this.addStep(e);return this},i.prototype.addStep=function(t){return this._options.steps.push(t),this},i.prototype.getStep=function(e){if(null!=this._options.steps[e])return t.extend({id:"step-"+e,path:"",host:"",placement:"right",title:"",content:"<p></p>",next:e===this._options.steps.length-1?-1:e+1,prev:e-1,animation:!0,container:this._options.container,autoscroll:this._options.autoscroll,backdrop:this._options.backdrop,backdropContainer:this._options.backdropContainer,backdropPadding:this._options.backdropPadding,redirect:this._options.redirect,reflexElement:this._options.steps[e].element,orphan:this._options.orphan,duration:this._options.duration,delay:this._options.delay,template:this._options.template,onShow:this._options.onShow,onShown:this._options.onShown,onHide:this._options.onHide,onHidden:this._options.onHidden,onNext:this._options.onNext,onPrev:this._options.onPrev,onPause:this._options.onPause,onResume:this._options.onResume,onRedirectError:this._options.onRedirectError},this._options.steps[e])},i.prototype.init=function(t){return this._force=t,this.ended()?(this._debug("Tour ended, init prevented."),this):(this.setCurrentStep(),this._initMouseNavigation(),this._initKeyboardNavigation(),this._onResize(function(t){return function(){return t.showStep(t._current)}}(this)),null!==this._current&&this.showStep(this._current),this._inited=!0,this)},i.prototype.start=function(t){var e;return null==t&&(t=!1),this._inited||this.init(t),null===this._current&&(e=this._makePromise(null!=this._options.onStart?this._options.onStart(this):void 0),this._callOnPromiseDone(e,this.showStep,0)),this},i.prototype.next=function(){var t;return t=this.hideStep(this._current),this._callOnPromiseDone(t,this._showNextStep)},i.prototype.prev=function(){var t;return t=this.hideStep(this._current),this._callOnPromiseDone(t,this._showPrevStep)},i.prototype.goTo=function(t){var e;return e=this.hideStep(this._current),this._callOnPromiseDone(e,this.showStep,t)},i.prototype.end=function(){var i,r;return i=function(i){return function(r){if(t(n).off("click.tour-"+i._options.name),t(n).off("keyup.tour-"+i._options.name),t(e).off("resize.tour-"+i._options.name),i._setState("end","yes"),i._inited=!1,i._force=!1,i._clearTimer(),null!=i._options.onEnd)return i._options.onEnd(i)}}(this),r=this.hideStep(this._current),this._callOnPromiseDone(r,i)},i.prototype.ended=function(){return!this._force&&!!this._getState("end")},i.prototype.restart=function(){return this._removeState("current_step"),this._removeState("end"),this._removeState("redirect_to"),this.start()},i.prototype.pause=function(){var t;return(t=this.getStep(this._current))&&t.duration?(this._paused=!0,this._duration-=(new Date).getTime()-this._start,e.clearTimeout(this._timer),this._debug("Paused/Stopped step "+(this._current+1)+" timer ("+this._duration+" remaining)."),null!=t.onPause?t.onPause(this,this._duration):void 0):this},i.prototype.resume=function(){var t;return(t=this.getStep(this._current))&&t.duration?(this._paused=!1,this._start=(new Date).getTime(),this._duration=this._duration||t.duration,this._timer=e.setTimeout(function(t){return function(){return t._isLast()?t.next():t.end()}}(this),this._duration),this._debug("Started step "+(this._current+1)+" timer with duration "+this._duration),null!=t.onResume&&this._duration!==t.duration?t.onResume(this,this._duration):void 0):this},i.prototype.hideStep=function(e){var i,n,r;if(r=this.getStep(e))return this._clearTimer(),n=this._makePromise(null!=r.onHide?r.onHide(this,e):void 0),i=function(i){return function(n){var a;if(a=t(r.element),a.data("bs.popover")||a.data("popover")||(a=t("body")),a.popover("destroy").removeClass("tour-"+i._options.name+"-element tour-"+i._options.name+"-"+e+"-element"),a.removeData("bs.popover"),r.reflex&&t(r.reflexElement).removeClass("tour-step-element-reflex").off(i._reflexEvent(r.reflex)+".tour-"+i._options.name),r.backdrop&&i._hideBackdrop(),null!=r.onHidden)return r.onHidden(i)}}(this),this._callOnPromiseDone(n,i),n},i.prototype.showStep=function(t){var i,r,a,o;return this.ended()?(this._debug("Tour ended, showStep prevented."),this):(o=this.getStep(t))?(a=t<this._current,i=this._makePromise(null!=o.onShow?o.onShow(this,t):void 0),r=function(e){return function(i){var r,s;if(e.setCurrentStep(t),r=function(){switch({}.toString.call(o.path)){case"[object Function]":return o.path();case"[object String]":return this._options.basePath+o.path;default:return o.path}}.call(e),!e._isRedirect(o.host,r,n.location)||(e._redirect(o,t,r),e._isJustPathHashDifferent(o.host,r,n.location))){if(e._isOrphan(o)){if(!1===o.orphan)return e._debug("Skip the orphan step "+(e._current+1)+".\nOrphan option is false and the element does not exist or is hidden."),void(a?e._showPrevStep():e._showNextStep());e._debug("Show the orphan step "+(e._current+1)+". Orphans option is true.")}return o.backdrop&&e._showBackdrop(o),s=function(){if(e.getCurrentStep()===t&&!e.ended())return null!=o.element&&o.backdrop&&e._showOverlayElement(o),e._showPopover(o,t),null!=o.onShown&&o.onShown(e),e._debug("Step "+(e._current+1)+" of "+e._options.steps.length)},o.autoscroll?e._scrollIntoView(o.element,s):s(),o.duration?e.resume():void 0}}}(this),o.delay?(this._debug("Wait "+o.delay+" milliseconds to show the step "+(this._current+1)),e.setTimeout(function(t){return function(){return t._callOnPromiseDone(i,r)}}(this),o.delay)):this._callOnPromiseDone(i,r),i):void 0},i.prototype.getCurrentStep=function(){return this._current},i.prototype.setCurrentStep=function(t){return null!=t?(this._current=t,this._setState("current_step",t)):(this._current=this._getState("current_step"),this._current=null===this._current?null:parseInt(this._current,10)),this},i.prototype.redraw=function(){return this._showOverlayElement(this.getStep(this.getCurrentStep()).element,!0)},i.prototype._setState=function(t,e){var i,n;if(this._options.storage){n=this._options.name+"_"+t;try{this._options.storage.setItem(n,e)}catch(t){i=t,i.code===DOMException.QUOTA_EXCEEDED_ERR&&this._debug("LocalStorage quota exceeded. State storage failed.")}return this._options.afterSetState(n,e)}return null==this._state&&(this._state={}),this._state[t]=e},i.prototype._removeState=function(t){var e;return this._options.storage?(e=this._options.name+"_"+t,this._options.storage.removeItem(e),this._options.afterRemoveState(e)):null!=this._state?delete this._state[t]:void 0},i.prototype._getState=function(t){var e,i;return this._options.storage?(e=this._options.name+"_"+t,i=this._options.storage.getItem(e)):null!=this._state&&(i=this._state[t]),void 0!==i&&"null"!==i||(i=null),this._options.afterGetState(t,i),i},i.prototype._showNextStep=function(){var t,e,i;return i=this.getStep(this._current),e=function(t){return function(e){return t.showStep(i.next)}}(this),t=this._makePromise(null!=i.onNext?i.onNext(this):void 0),this._callOnPromiseDone(t,e)},i.prototype._showPrevStep=function(){var t,e,i;return i=this.getStep(this._current),e=function(t){return function(e){return t.showStep(i.prev)}}(this),t=this._makePromise(null!=i.onPrev?i.onPrev(this):void 0),this._callOnPromiseDone(t,e)},i.prototype._debug=function(t){if(this._options.debug)return e.console.log("Bootstrap Tour '"+this._options.name+"' | "+t)},i.prototype._isRedirect=function(t,e,i){var n;return!(""===t||!this._isHostDifferent(t,i.href))||(n=[i.pathname,i.search,i.hash].join(""),null!=e&&""!==e&&("[object RegExp]"==={}.toString.call(e)&&!e.test(n)||"[object String]"==={}.toString.call(e)&&this._isPathDifferent(e,n)))},i.prototype._isHostDifferent=function(t,e){return this._getProtocol(t)!==this._getProtocol(e)||this._getHost(t)!==this._getHost(e)},i.prototype._isPathDifferent=function(t,e){return this._getPath(t)!==this._getPath(e)||!this._equal(this._getQuery(t),this._getQuery(e))||!this._equal(this._getHash(t),this._getHash(e))},i.prototype._isJustPathHashDifferent=function(t,e,i){var n;return(""===t||!this._isHostDifferent(t,i.href))&&(n=[i.pathname,i.search,i.hash].join(""),"[object String]"==={}.toString.call(e)&&(this._getPath(e)===this._getPath(n)&&this._equal(this._getQuery(e),this._getQuery(n))&&!this._equal(this._getHash(e),this._getHash(n))))},i.prototype._redirect=function(e,i,r){if(t.isFunction(e.redirect))return e.redirect.call(this,r);if(!0===e.redirect){if(this._debug("Redirect to "+e.host+r),this._getState("redirect_to")!==""+i)return this._setState("redirect_to",""+i),n.location.href=""+e.host+r;if(this._debug("Error redirection loop to "+r),this._removeState("redirect_to"),null!=e.onRedirectError)return e.onRedirectError(this)}},i.prototype._isOrphan=function(e){return null==e.element||!t(e.element).length||t(e.element).is(":hidden")&&"http://www.w3.org/2000/svg"!==t(e.element)[0].namespaceURI},i.prototype._isLast=function(){return this._current<this._options.steps.length-1},i.prototype._showPopover=function(e,i){var n,r,a,o,s;if(t(".tour-"+this._options.name).remove(),o=t.extend({},this._options),a=this._isOrphan(e),e.template=this._template(e,i),a&&(e.element="body",e.placement="top"),n=t(e.element),n.addClass("tour-"+this._options.name+"-element tour-"+this._options.name+"-"+i+"-element"),e.options&&t.extend(o,e.options),e.reflex&&!a&&t(e.reflexElement).addClass("tour-step-element-reflex").off(this._reflexEvent(e.reflex)+".tour-"+this._options.name).on(this._reflexEvent(e.reflex)+".tour-"+this._options.name,function(t){return function(){return t._isLast()?t.next():t.end()}}(this)),s=!0===e.smartPlacement&&-1===e.placement.search(/auto/i),n.popover({placement:s?"auto "+e.placement:e.placement,trigger:"manual",title:e.title,content:e.content,html:!0,animation:e.animation,container:e.container,template:e.template,selector:e.element}).popover("show"),r=n.data("bs.popover")?n.data("bs.popover").tip():n.data("popover").tip(),r.attr("id",e.id),this._reposition(r,e),a)return this._center(r)},i.prototype._template=function(e,i){var n,r,a,o,s,l;return l=e.template,this._isOrphan(e)&&"[object Boolean]"!=={}.toString.call(e.orphan)&&(l=e.orphan),s=t(t.isFunction(l)?l(i,e):l),n=s.find(".popover-navigation"),a=n.find('[data-role="prev"]'),r=n.find('[data-role="next"]'),o=n.find('[data-role="pause-resume"]'),this._isOrphan(e)&&s.addClass("orphan"),s.addClass("tour-"+this._options.name+" tour-"+this._options.name+"-"+i),e.reflex&&s.addClass("tour-"+this._options.name+"-reflex"),e.prev<0&&(a.addClass("disabled"),a.prop("disabled",!0)),e.next<0&&(r.addClass("disabled"),r.prop("disabled",!0)),e.duration||o.remove(),s.clone().wrap("<div>").parent().html()},i.prototype._reflexEvent=function(t){return"[object Boolean]"==={}.toString.call(t)?"click":t},i.prototype._reposition=function(e,i){var r,a,o,s,l,u,c;if(s=e[0].offsetWidth,a=e[0].offsetHeight,c=e.offset(),l=c.left,u=c.top,r=t(n).outerHeight()-c.top-e.outerHeight(),r<0&&(c.top=c.top+r),o=t("html").outerWidth()-c.left-e.outerWidth(),o<0&&(c.left=c.left+o),c.top<0&&(c.top=0),c.left<0&&(c.left=0),e.offset(c),"bottom"===i.placement||"top"===i.placement){if(l!==c.left)return this._replaceArrow(e,2*(c.left-l),s,"left")}else if(u!==c.top)return this._replaceArrow(e,2*(c.top-u),a,"top")},i.prototype._center=function(i){return i.css("top",t(e).outerHeight()/2-i.outerHeight()/2)},i.prototype._replaceArrow=function(t,e,i,n){return t.find(".arrow").css(n,e?50*(1-e/i)+"%":"")},i.prototype._scrollIntoView=function(i,n){var r,a,o,s,l,u;return r=t(i),r.length?(a=t(e),s=r.offset().top,u=a.height(),l=Math.max(0,s-u/2),this._debug("Scroll into view. ScrollTop: "+l+". Element offset: "+s+". Window height: "+u+"."),o=0,t("body, html").stop(!0,!0).animate({scrollTop:Math.ceil(l)},function(t){return function(){if(2==++o)return n(),t._debug("Scroll into view.\nAnimation end element offset: "+r.offset().top+".\nWindow height: "+a.height()+".")}}(this))):n()},i.prototype._onResize=function(i,n){return t(e).on("resize.tour-"+this._options.name,function(){return clearTimeout(n),n=setTimeout(i,100)})},i.prototype._initMouseNavigation=function(){var e;return e=this,t(n).off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='prev']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='next']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='end']").off("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='pause-resume']").on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='next']",function(t){return function(e){return e.preventDefault(),t.next()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='prev']",function(t){return function(e){return e.preventDefault(),t.prev()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='end']",function(t){return function(e){return e.preventDefault(),t.end()}}(this)).on("click.tour-"+this._options.name,".popover.tour-"+this._options.name+" *[data-role='pause-resume']",function(i){var n;return i.preventDefault(),n=t(this),n.text(e._paused?n.data("pause-text"):n.data("resume-text")),e._paused?e.resume():e.pause()})},i.prototype._initKeyboardNavigation=function(){if(this._options.keyboard)return t(n).on("keyup.tour-"+this._options.name,function(t){return function(e){if(e.which)switch(e.which){case 39:return e.preventDefault(),t._isLast()?t.next():t.end();case 37:if(e.preventDefault(),t._current>0)return t.prev();break;case 27:return e.preventDefault(),t.end()}}}(this))},i.prototype._makePromise=function(e){return e&&t.isFunction(e.then)?e:null},i.prototype._callOnPromiseDone=function(t,e,i){return t?t.then(function(t){return function(n){return e.call(t,i)}}(this)):e.call(this,i)},i.prototype._showBackdrop=function(e){if(!this.backdrop.backgroundShown)return this.backdrop=t("<div>",{class:"tour-backdrop"}),this.backdrop.backgroundShown=!0,t(e.backdropContainer).append(this.backdrop)},i.prototype._hideBackdrop=function(){return this._hideOverlayElement(),this._hideBackground()},i.prototype._hideBackground=function(){if(this.backdrop)return this.backdrop.remove(),this.backdrop.overlay=null,this.backdrop.backgroundShown=!1},i.prototype._showOverlayElement=function(e,i){var n,r;if((n=t(e.element))&&0!==n.length&&(!this.backdrop.overlayElementShown||i))return this.backdrop.overlayElementShown||(this.backdrop.$element=n.addClass("tour-step-backdrop"),this.backdrop.$background=t("<div>",{class:"tour-step-background"}),this.backdrop.$background.appendTo(e.backdropContainer),this.backdrop.overlayElementShown=!0),r={width:n.innerWidth(),height:n.innerHeight(),offset:n.offset()},e.backdropPadding&&(r=this._applyBackdropPadding(e.backdropPadding,r)),this.backdrop.$background.width(r.width).height(r.height).offset(r.offset)},i.prototype._hideOverlayElement=function(){if(this.backdrop.overlayElementShown)return this.backdrop.$element.removeClass("tour-step-backdrop"),this.backdrop.$background.remove(),this.backdrop.$element=null,this.backdrop.$background=null,this.backdrop.overlayElementShown=!1},i.prototype._applyBackdropPadding=function(t,e){return"object"==typeof t?(null==t.top&&(t.top=0),null==t.right&&(t.right=0),null==t.bottom&&(t.bottom=0),null==t.left&&(t.left=0),e.offset.top=e.offset.top-t.top,e.offset.left=e.offset.left-t.left,e.width=e.width+t.left+t.right,e.height=e.height+t.top+t.bottom):(e.offset.top=e.offset.top-t,e.offset.left=e.offset.left-t,e.width=e.width+2*t,e.height=e.height+2*t),e},i.prototype._clearTimer=function(){return e.clearTimeout(this._timer),this._timer=null,this._duration=null},i.prototype._getProtocol=function(t){return t=t.split("://"),t.length>1?t[0]:"http"},i.prototype._getHost=function(t){return t=t.split("//"),t=t.length>1?t[1]:t[0],t.split("/")[0]},i.prototype._getPath=function(t){return t.replace(/\/?$/,"").split("?")[0].split("#")[0]},i.prototype._getQuery=function(t){return this._getParams(t,"?")},i.prototype._getHash=function(t){return this._getParams(t,"#")},i.prototype._getParams=function(t,e){var i,n,r,a,o;if(n=t.split(e),1===n.length)return{};for(n=n[1].split("&"),r={},a=0,o=n.length;a<o;a++)i=n[a],i=i.split("="),r[i[0]]=i[1]||"";return r},i.prototype._equal=function(t,e){var i,n;if("[object Object]"==={}.toString.call(t)&&"[object Object]"==={}.toString.call(e)){for(i in t)if(n=t[i],e[i]!==n)return!1;for(i in e)if(n=e[i],t[i]!==n)return!1;return!0}return t===e},i}(),e.Tour=i}(t,window)}).call(e,i(0))},function(t,e){var i;i=function(){return this}();try{i=i||Function("return this")()||(0,eval)("this")}catch(t){"object"==typeof window&&(i=window)}t.exports=i},function(t,e,i){"use strict";(function(t){function n(t,e){o(t).find(".tag-name").each(function(){o(this).click(function(){var t=o(this).text(),i=t.split(":");return e(i[0],i[1]),!0})})}Object.defineProperty(e,"__esModule",{value:!0});var r=i(0),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=a.default;a.default.fn.autocomplete_tagging=function(e){function 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k=C.extend({initialize:function(t){b.default.cssLoadFile("static/style/jquery.rating.css"),b.default.cssLoadFile("static/style/autocomplete_tagging.css"),b.default.cssLoadFile("static/style/jquery-ui/smoothness/jquery-ui.css"),b.default.cssLoadFile("static/style/library.css"),b.default.cssLoadFile("static/style/trackster.css"),this.baseURL=t},save_viz:function(){Galaxy.modal.show({title:"Saving...",body:"progress"});var t=[];n(".bookmark").each(function(){t.push({position:n(this).children(".position").text(),annotation:n(this).children(".annotation").text()})});var e=x.overview_drawable?x.overview_drawable.config.get_value("name"):null,i={view:x.to_dict(),viewport:{chrom:x.chrom,start:x.low,end:x.high,overview:e},bookmarks:t};return n.ajax({url:Galaxy.root+"visualization/save",type:"POST",dataType:"json",data:{id:x.vis_id,title:x.config.get_value("name"),dbkey:x.dbkey,type:"trackster",vis_json:JSON.stringify(i)}}).success(function(t){Galaxy.modal.hide(),x.vis_id=t.vis_id,x.has_changes=!1,window.history.pushState({},"",t.url+window.location.hash)}).error(function(){Galaxy.modal.show({title:(0,o.default)("Could Not Save"),body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})},createButtonMenu:function(){var t=this,e=p.default.create_icon_buttons_menu([{icon_class:"plus-button",title:(0,o.default)("Add tracks"),on_click:function(){d.default.select_datasets({dbkey:x.dbkey},function(t){l.each(t,function(t){x.add_drawable(c.default.object_from_template(t,x,x))})})}},{icon_class:"block--plus",title:(0,o.default)("Add group"),on_click:function(){x.add_drawable(new c.default.DrawableGroup(x,x,{name:"New 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d.default.TrackBrowserRouter(e),t.history.start()},init_keyboard_nav:function(t){n(document).keyup(function(e){if(!n(e.srcElement).is(":input"))switch(e.which){case 37:t.move_fraction(.25);break;case 38:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()-20);break;case 39:t.move_fraction(-.25);break;case 40:Math.round(t.viewport_container.height()/15);t.viewport_container.scrollTop(t.viewport_container.scrollTop()+20)}})},handle_unsaved_changes:function(t){if(t.has_changes){var e=this;Galaxy.modal.show({title:(0,o.default)("Close visualization"),body:"There are unsaved changes to your visualization which will be lost if you do not save them.",buttons:{Cancel:function(){Galaxy.modal.hide()},"Leave without Saving":function(){n(window).off("beforeunload"),window.location=Galaxy.root+"visualization"},Save:function(){n.when(e.save_viz()).then(function(){window.location=Galaxy.root+"visualization"})}}})}else window.location=Galaxy.root+"visualization"}}),S=t.View.extend({initialize:function(){w=new k(Galaxy.root),w.createButtonMenu(),w.buttonMenu.$el.attr("style","float: right"),n("#center .unified-panel-header-inner").append(w.buttonMenu.$el),n("#right .unified-panel-title").append("Bookmarks"),n("#right .unified-panel-icons").append("<a id='add-bookmark-button' class='icon-button menu-button plus-button' href='javascript:void(0);' title='Add bookmark'></a>"),n("#right-border").click(function(){x.resize_window()}),force_right_panel("hide"),galaxy_config.app.id?this.view_existing():g.default.get("dataset_id")?this.choose_existing_or_new():this.view_new()},choose_existing_or_new:function(){var t=this,e=g.default.get("dbkey"),i={},n={dbkey:e,dataset_id:g.default.get("dataset_id"),hda_ldda:g.default.get("hda_ldda"),gene_region:g.default.get("gene_region")};e&&(i["f-dbkey"]=e),Galaxy.modal.show({title:"View Data in a New or Saved Visualization?",body:"<p><ul style='list-style: disc inside 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t=galaxy_config.app.viz_config;x=w.create_visualization({container:n("#center .unified-panel-body"),name:t.title,vis_id:t.vis_id,dbkey:t.dbkey},t.viewport,t.tracks,t.bookmarks,!0),this.init_editor()},view_new:function(){var t=this;n.ajax({url:Galaxy.root+"api/genomes?chrom_info=True",data:{},error:function(){alert("Couldn't create new browser.")},success:function(e){Galaxy.modal.show({title:(0,o.default)("New Visualization"),body:t.template_view_new(e),buttons:{Cancel:function(){window.location=Galaxy.root+"visualizations/list"},Create:function(){t.create_browser(n("#new-title").val(),n("#new-dbkey").val()),Galaxy.modal.hide()}}});var i=e.map(function(t){return t[1]});galaxy_config.app.default_dbkey&&l.contains(i,galaxy_config.app.default_dbkey)&&n("#new-dbkey").val(galaxy_config.app.default_dbkey),n("#new-title").focus(),n("select[name='dbkey']").select2(),n("#overlay").css("overflow","auto")}})},template_view_new:function(t){for(var e='<form id="new-browser-form" action="javascript:void(0);" method="post" onsubmit="return false;"><div class="form-row"><label for="new-title">Browser name:</label><div class="form-row-input"><input type="text" name="title" id="new-title" value="Unnamed"></input></div><div style="clear: both;"></div></div><div class="form-row"><label for="new-dbkey">Reference genome build (dbkey): </label><div class="form-row-input"><select name="dbkey" id="new-dbkey">',i=0;i<t.length;i++)e+='<option value="'+t[i][1]+'">'+t[i][0]+"</option>";return e+='</select></div><div style="clear: both;"></div></div><div class="form-row">Is the build not listed here? <a href="'+Galaxy.root+'custom_builds">Add a Custom Build</a></div></form>'},create_browser:function(t,e){n(document).trigger("convert_to_values"),x=w.create_visualization({container:n("#center .unified-panel-body"),name:t,dbkey:e},galaxy_config.app.gene_region),this.init_editor(),x.editor=!0},init_editor:function(){n("#center .unified-panel-title").text(x.config.get_value("name")+" ("+x.dbkey+")"),galaxy_config.app.add_dataset&&n.ajax({url:Galaxy.root+"api/datasets/"+galaxy_config.app.add_dataset,data:{hda_ldda:"hda",data_type:"track_config"},dataType:"json",success:function(t){x.add_drawable(c.default.object_from_template(t,x,x))}}),n("#add-bookmark-button").click(function(){var t=x.chrom+":"+x.low+"-"+x.high;return w.add_bookmark(t,"Bookmark description",!0)}),w.init_keyboard_nav(x),n(window).on("beforeunload",function(){if(x.has_changes)return"There are unsaved changes to your visualization that will be lost if you leave this page."})}});e.default={TracksterUI:k,GalaxyApp:S}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var a=i(1),o=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=i(36),l=r(s),u=i(35),c=r(u),h=i(86),d=(r(h),{hidden:!1,show:function(){this.set("hidden",!1)},hide:function(){this.set("hidden",!0)},toggle:function(){this.set("hidden",!this.get("hidden"))},is_visible:function(){return!this.attributes.hidden}}),f=t.Model.extend({defaults:{name:null,label:null,type:null,value:null,html:null,num_samples:5},initialize:function(t){this.attributes.html=unescape(this.attributes.html)},copy:function(){return new f(this.toJSON())},set_value:function(t){this.set("value",t||"")}}),p=t.Collection.extend({model:f}),m=f.extend({}),g=f.extend({set_value:function(t){this.set("value",parseInt(t,10))},get_samples:function(){return d3.scale.linear().domain([this.get("min"),this.get("max")]).ticks(this.get("num_samples"))}}),v=g.extend({set_value:function(t){this.set("value",parseFloat(t))}}),_=f.extend({get_samples:function(){return o.map(this.get("options"),function(t){return t[0]})}});f.subModelTypes={integer:g,float:v,data:m,select:_};var y=t.Model.extend({defaults:{id:null,name:null,description:null,target:null,inputs:[],outputs:[]},urlRoot:Galaxy.root+"api/tools",initialize:function(t){this.set("inputs",new p(o.map(t.inputs,function(t){return new(f.subModelTypes[t.type]||f)(t)})))},toJSON:function(){var e=t.Model.prototype.toJSON.call(this);return e.inputs=this.get("inputs").map(function(t){return t.toJSON()}),e},remove_inputs:function(t){var e=this,i=e.get("inputs").filter(function(e){return-1!==t.indexOf(e.get("type"))});e.get("inputs").remove(i)},copy:function(e){var i=new y(this.toJSON());if(e){var n=new t.Collection;i.get("inputs").each(function(t){t.get_samples()&&n.push(t)}),i.set("inputs",n)}return i},apply_search_results:function(t){return-1!==o.indexOf(t,this.attributes.id)?this.show():this.hide(),this.is_visible()},set_input_value:function(t,e){this.get("inputs").find(function(e){return e.get("name")===t}).set("value",e)},set_input_values:function(t){var e=this;o.each(o.keys(t),function(i){e.set_input_value(i,t[i])})},run:function(){return this._run()},rerun:function(t,e){return this._run({action:"rerun",target_dataset_id:t.id,regions:e})},get_inputs_dict:function(){var t={};return this.get("inputs").each(function(e){t[e.get("name")]=e.get("value")}),t},_run:function(t){var e=o.extend({tool_id:this.id,inputs:this.get_inputs_dict()},t),i=n.Deferred(),r=new l.default.ServerStateDeferred({ajax_settings:{url:this.urlRoot,data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});return n.when(r.go()).then(function(t){i.resolve(new c.default.DatasetCollection(t))}),i}});o.extend(y.prototype,d);var b=(t.View.extend({}),t.Collection.extend({model:y})),w=t.Model.extend(d),x=t.Model.extend({defaults:{elems:[],open:!1},clear_search_results:function(){o.each(this.attributes.elems,function(t){t.show()}),this.show(),this.set("open",!1)},apply_search_results:function(t){var e,i=!0;o.each(this.attributes.elems,function(n){n instanceof w?(e=n,e.hide()):n instanceof y&&n.apply_search_results(t)&&(i=!1,e&&e.show())}),i?this.hide():(this.show(),this.set("open",!0))}});o.extend(x.prototype,d);var C=t.Model.extend({defaults:{search_hint_string:"search tools",min_chars_for_search:3,clear_btn_url:"",visible:!0,query:"",results:null,clear_key:27},urlRoot:Galaxy.root+"api/tools",initialize:function(){this.on("change:query",this.do_search)},do_search:function(){var t=this.attributes.query;if(t.length<this.attributes.min_chars_for_search)return void this.set("results",null);var e=t;this.timer&&clearTimeout(this.timer),n("#search-clear-btn").hide(),n("#search-spinner").show();var i=this;this.timer=setTimeout(function(){"undefined"!=typeof ga&&ga("send","pageview",Galaxy.root+"?q="+e),n.get(i.urlRoot,{q:e},function(t){i.set("results",t),n("#search-spinner").hide(),n("#search-clear-btn").show()},"json")},400)},clear_search:function(){this.set("query",""),this.set("results",null)}});o.extend(C.prototype,d);var k=t.Model.extend({initialize:function(e){this.attributes.tool_search=e.tool_search,this.attributes.tool_search.on("change:results",this.apply_search_results,this),this.attributes.tools=e.tools,this.attributes.layout=new t.Collection(this.parse(e.layout))},parse:function(t){var e=this,i=function t(i){var n=i.model_class;if(n.indexOf("Tool")===n.length-4)return e.attributes.tools.get(i.id);if("ToolSection"===n){var r=o.map(i.elems,t);return i.elems=r,new x(i)}return"ToolSectionLabel"===n?new w(i):void 0};return o.map(t,i)},clear_search_results:function(){this.get("layout").each(function(t){t instanceof x?t.clear_search_results():t.show()})},apply_search_results:function(){var t=this.get("tool_search").get("results");if(null===t)return void this.clear_search_results();var e=null;this.get("layout").each(function(i){i instanceof w?(e=i,e.hide()):i instanceof y?i.apply_search_results(t)&&e&&e.show():(e=null,i.apply_search_results(t))})}}),S=t.View.extend({initialize:function(){this.model.on("change:hidden",this.update_visible,this),this.update_visible()},update_visible:function(){this.model.attributes.hidden?this.$el.hide():this.$el.show()}}),T=S.extend({tagName:"div",render:function(){var t=n("<div/>");t.append(D.tool_link(this.model.toJSON()));var e=this.model.get("form_style",null);if("upload1"===this.model.id)t.find("a").on("click",function(t){t.preventDefault(),Galaxy.upload.show()});else if("regular"===e){var i=this;t.find("a").on("click",function(t){t.preventDefault(),Galaxy.router.push("/",{tool_id:i.model.id,version:i.model.get("version")})})}return this.$el.append(t),this}}),A=S.extend({tagName:"div",className:"toolPanelLabel",render:function(){return this.$el.append(n("<span/>").text(this.model.attributes.text)),this}}),M=S.extend({tagName:"div",className:"toolSectionWrapper",initialize:function(){S.prototype.initialize.call(this),this.model.on("change:open",this.update_open,this)},render:function(){this.$el.append(D.panel_section(this.model.toJSON()));var t=this.$el.find(".toolSectionBody");return o.each(this.model.attributes.elems,function(e){if(e instanceof y){var i=new T({model:e,className:"toolTitle"});i.render(),t.append(i.$el)}else if(e instanceof w){var n=new A({model:e});n.render(),t.append(n.$el)}}),this},events:{"click .toolSectionTitle > a":"toggle"},toggle:function(){this.model.set("open",!this.model.attributes.open)},update_open:function(){this.model.attributes.open?this.$el.children(".toolSectionBody").slideDown("fast"):this.$el.children(".toolSectionBody").slideUp("fast")}}),E=t.View.extend({tagName:"div",id:"tool-search",className:"bar",events:{click:"focus_and_select","keyup :input":"query_changed","change :input":"query_changed","click #search-clear-btn":"clear"},render:function(){return this.$el.append(D.tool_search(this.model.toJSON())),this.model.is_visible()||this.$el.hide(),n("#messagebox").is(":visible")&&this.$el.css("top","95px"),this.$el.find("[title]").tooltip(),this},focus_and_select:function(){this.$el.find(":input").focus().select()},clear:function(){return this.model.clear_search(),this.$el.find(":input").val(""),this.focus_and_select(),!1},query_changed:function(t){if(this.model.attributes.clear_key&&this.model.attributes.clear_key===t.which)return this.clear(),!1;this.model.set("query",this.$el.find(":input").val())}}),O=t.View.extend({tagName:"div",className:"toolMenu",initialize:function(){this.model.get("tool_search").on("change:results",this.handle_search_results,this)},render:function(){var t=this,e=new E({model:this.model.get("tool_search")});return e.render(),t.$el.append(e.$el),this.model.get("layout").each(function(e){if(e instanceof x){var i=new M({model:e});i.render(),t.$el.append(i.$el)}else if(e instanceof y){var n=new T({model:e,className:"toolTitleNoSection"});n.render(),t.$el.append(n.$el)}else if(e instanceof w){var r=new A({model:e});r.render(),t.$el.append(r.$el)}}),t.$el.find("a.tool-link").click(function(e){var i=n(this).attr("class").split(/\s+/)[0],r=t.model.get("tools").get(i);t.trigger("tool_link_click",e,r)}),this},handle_search_results:function(){var t=this.model.get("tool_search").get("results");t&&0===t.length?n("#search-no-results").show():n("#search-no-results").hide()}}),$=t.View.extend({className:"toolForm",render:function(){this.$el.children().remove(),this.$el.append(D.tool_form(this.model.toJSON()))}}),D=(t.View.extend({className:"toolMenuAndView",initialize:function(){this.tool_panel_view=new O({collection:this.collection}),this.tool_form_view=new $},render:function(){this.tool_panel_view.render(),this.tool_panel_view.$el.css("float","left"),this.$el.append(this.tool_panel_view.$el),this.tool_form_view.$el.hide(),this.$el.append(this.tool_form_view.$el);var t=this;this.tool_panel_view.on("tool_link_click",function(e,i){e.preventDefault(),t.show_tool(i)})},show_tool:function(t){var e=this;t.fetch().done(function(){e.tool_form_view.model=t,e.tool_form_view.render(),e.tool_form_view.$el.show(),n("#left").width("650px")})}}),{tool_search:o.template(['<input id="tool-search-query" class="search-query parent-width" name="query" ','placeholder="<%- search_hint_string %>" autocomplete="off" type="text" />','<a id="search-clear-btn" title="clear search (esc)"> </a>','<span id="search-spinner" class="search-spinner fa fa-spinner fa-spin"></span>'].join("")),panel_section:o.template(['<div class="toolSectionTitle" id="title_<%- id %>">','<a href="javascript:void(0)"><span><%- name %></span></a>',"</div>",'<div id="<%- id %>" class="toolSectionBody" style="display: none;">','<div class="toolSectionBg"></div>',"<div>"].join("")),tool_link:o.template(['<a class="<%- id %> tool-link" href="<%= link %>" target="<%- target %>" minsizehint="<%- min_width %>">','<span class="labels">',"<% _.each( labels, function( label ){ %>",'<span class="label label-default label-<%- label %>">',"<%- label %>","</span>","<% }); %>","</span>",'<span class="tool-old-link">',"<%- name %>","</span>"," <%- description %>","</a>"].join("")),tool_form:o.template(['<div class="toolFormTitle"><%- tool.name %> (version <%- tool.version %>)</div>','<div class="toolFormBody">',"<% _.each( tool.inputs, function( input ){ %>",'<div class="form-row">','<label for="<%- input.name %>"><%- input.label %>:</label>','<div class="form-row-input">',"<%= input.html %>","</div>",'<div class="toolParamHelp" style="clear: both;">',"<%- input.help %>","</div>",'<div style="clear: both;"></div>',"</div>","<% }); %>","</div>",'<div class="form-row form-actions">','<input type="submit" class="btn btn-primary" name="runtool_btn" value="Execute" />',"</div>",'<div class="toolHelp">','<div class="toolHelpBody"><% tool.help %></div>',"</div>"].join(""),{variable:"tool"})});e.default={ToolParameter:f,IntegerToolParameter:g,SelectToolParameter:_,Tool:y,ToolCollection:b,ToolSearch:C,ToolPanel:k,ToolPanelView:O,ToolFormView:$}}).call(e,i(2),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(4),u=a(l),c=i(6),h=a(c),d=i(8),f=a(d),p=i(45),m=a(p),g=i(34),v=a(g),_=t.View.extend({initialize:function(t){var e=this;this.modal=parent.Galaxy.modal||new f.default.View,this.form=new m.default(u.default.merge({listen_to_history:!0,always_refresh:!1,buildmodel:function(t,i){var r=i.model.attributes,a="",o={},l=r.job_id;l?a=Galaxy.root+"api/jobs/"+l+"/build_for_rerun":(a=Galaxy.root+"api/tools/"+r.id+"/build",o=n.extend({},Galaxy.params),o.tool_id&&delete o.tool_id),r.version&&(o.tool_version=r.version),u.default.get({url:a,data:o,success:function(n){if(!n.display)return void(window.location=Galaxy.root);i.model.set(n),e._customize(i),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model ready.",n),t.resolve()},error:function(e,a){var o=e&&e.err_msg||"Uncaught error.";401==a?window.location=Galaxy.root+"user/login?"+n.param({redirect:Galaxy.root+"?tool_id="+r.id}):i.$el.is(":empty")?i.$el.prepend(new h.default.Message({message:o,status:"danger",persistent:!0,large:!0}).$el):Galaxy.modal&&Galaxy.modal.show({title:(0,s.default)("Tool request failed"),body:o,buttons:{Close:function(){Galaxy.modal.hide()}}}),Galaxy.emit.debug("tool-form-base::_buildModel()","Initial tool model request failed.",e),t.reject()}})},postchange:function(t,e){var i={tool_id:e.model.get("id"),tool_version:e.model.get("version"),inputs:n.extend(!0,{},e.data.create())};e.wait(!0),Galaxy.emit.debug("tool-form::postchange()","Sending current state.",i),u.default.request({type:"POST",url:Galaxy.root+"api/tools/"+e.model.get("id")+"/build",data:i,success:function(i){e.update(i),e.wait(!1),Galaxy.emit.debug("tool-form::postchange()","Received new model.",i),t.resolve()},error:function(e){Galaxy.emit.debug("tool-form::postchange()","Refresh request failed.",e),t.reject()}})}},t)),this.deferred=this.form.deferred,this.setElement("<div/>"),this.$el.append(this.form.$el)},_customize:function(t){var e=this,i=t.model.attributes,n=new h.default.Button({icon:"fa-check",tooltip:"Execute: "+i.name+" ("+i.version+")",title:(0,s.default)("Execute"),cls:"btn btn-primary ui-clear-float",wait_cls:"btn btn-info ui-clear-float",onclick:function(){n.wait(),t.portlet.disable(),e.submit(i,function(){n.unwait(),t.portlet.enable()})}});i.buttons={execute:n},i.job_id&&i.job_remap&&i.inputs.push({label:"Resume dependencies from this job",name:"rerun_remap_job_id",type:"select",display:"radio",ignore:"__ignore__",value:"__ignore__",options:[["Yes",i.job_id],["No","__ignore__"]],help:"The previous run of this tool failed and other tools were waiting for it to finish successfully. Use this option to resume those tools using the new output(s) of this tool run."})},submit:function(t,e){var i=this,a={tool_id:t.id,tool_version:t.version,inputs:this.form.data.create()};if(this.form.trigger("reset"),!i.validate(a))return Galaxy.emit.debug("tool-form::submit()","Submission canceled. Validation failed."),void(e&&e());if(t.action!==Galaxy.root+"tool_runner/index"){var o=n("<form/>").attr({action:t.action,method:t.method,enctype:t.enctype});return r.each(a.inputs,function(t,e){o.append(n("<input/>").attr({name:e,value:t}))}),o.hide().appendTo("body").submit().remove(),void(e&&e())}Galaxy.emit.debug("tool-form::submit()","Validation complete.",a),u.default.request({type:"POST",url:Galaxy.root+"api/tools",data:a,success:function(t){if(e&&e(),i.$el.children().hide(),i.$el.append(i._templateSuccess(t)),t.jobs&&t.jobs.length>0){i.$el.append(n("<div/>",{id:"webhook-view"}));new v.default.WebhookView({urlRoot:Galaxy.root+"api/webhooks/tool",toolId:a.tool_id})}parent.Galaxy&&parent.Galaxy.currHistoryPanel&&parent.Galaxy.currHistoryPanel.refreshContents()},error:function(t){e&&e(),Galaxy.emit.debug("tool-form::submit","Submission failed.",t);var n=!1;if(t&&t.err_data){var r=i.form.data.matchResponse(t.err_data);for(var o in r){i.form.highlight(o,r[o]),n=!0;break}}n||i.modal.show({title:(0,s.default)("Job submission failed"),body:i._templateError(a,t&&t.err_msg),buttons:{Close:function(){i.modal.hide()}}})}})},validate:function(t){var e=t.inputs,i=-1,n=null;for(var r in e){var a=e[r],o=this.form.data.match(r),s=this.form.field_list[o],l=this.form.input_list[o];if(o&&l&&s){if(!l.optional&&null==a)return this.form.highlight(o),!1;if(a&&a.batch){var u=a.values.length,c=u>0&&a.values[0]&&a.values[0].src;if(c)if(null===n)n=c;else if(n!==c)return this.form.highlight(o,"Please select either dataset or dataset list fields for all batch mode fields."),!1;if(-1===i)i=u;else if(i!==u)return this.form.highlight(o,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+u+"</b> selection(s) while a previous field contains <b>"+i+"</b>."),!1}}else Galaxy.emit.debug("tool-form::validate()","Retrieving input objects failed.")}return!0},_templateSuccess:function(t){if(t.jobs&&t.jobs.length>0){var e=t.jobs.length,i=1==e?"1 job has":e+" jobs have",a=n("<div/>").addClass("donemessagelarge").append(n("<p/>").text(i+" been successfully added to the queue - resulting in the following datasets:"));return r.each(t.outputs,function(t){a.append(n("<p/>").addClass("messagerow").append(n("<b/>").text(t.hid+": "+t.name)))}),a.append(n("<p/>").append("<b/>").text("You can check the status of queued jobs and view the resulting data by refreshing the History pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered.")),a}return this._templateError(t,"Invalid success response. No jobs found.")},_templateError:function(t,e){return n("<div/>").addClass("errormessagelarge").append(n("<p/>").text("The server could not complete the request. Please contact the Galaxy Team if this error persists. "+(e||""))).append(n("<pre/>").text(JSON.stringify(t,null,4)))}});e.default={View:_}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(4),a=function(t){return t&&t.__esModule?t:{default:t}}(r);e.default=t.Model.extend({initialize:function(){this.active={},this.last=null},execute:function(t){var e=this,i=a.default.uid(),r=t.length>0;this.active[i]=!0;var o=n.Deferred();o.promise().always(function(){delete e.active[i],r&&Galaxy.emit.debug("deferred::execute()",this.state().charAt(0).toUpperCase()+this.state().slice(1)+" "+i)}),n.when(this.last).always(function(){e.active[i]?(r&&Galaxy.emit.debug("deferred::execute()","Running "+i),t(o),!r&&o.resolve()):o.reject()}),this.last=o.promise()},reset:function(){Galaxy.emit.debug("deferred::execute()","Reset");for(var t in this.active)this.active[t]=!1},ready:function(){return n.isEmptyObject(this.active)}})}).call(e,i(2),i(0))},function(t,e,i){"use 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  * @author <a href="mailto:dylan@dyve.net">Dylan Verheul</a>
  * @version 2.4.4
@@ -53,10 +53,10 @@ return a&&(s.length<4&&n("jQuery.fn.attr( props, pass ) is deprecated"),e&&!h.te
  * @license MIT | GPL | Apache 2.0, see LICENSE.txt
  * @see https://github.com/dyve/jquery-autocomplete
  */
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n=parseInt(t,10);return i=i||{},(isNaN(n)||i.min&&n<i.min)&&(n=e),n},n=function(t,e){return[t,encodeURIComponent(e)].join("=")},r=function(e,i){var r=[];return t.each(i,function(t,e){r.push(n(t,e))}),r.length&&(e+=-1===e.indexOf("?")?"?":"&",e+=r.join("&")),e},a=function(t,e,i){return t=String(t.value),e=String(e.value),i||(t=t.toLowerCase(),e=e.toLowerCase()),t>e?1:t<e?-1:0},o=function(t,e,i){var n,r,a,o,s,l,u=[];for(l=String(t).replace("\r\n","\n").split(e),n=0;n<l.length;n++){for(o=l[n].split(i),a=[],r=0;r<o.length;r++)a.push(decodeURIComponent(o[r]));s=a.shift(),u.push({value:s,data:a})}return u};t.Autocompleter=function(e,n){if(!e||!(e instanceof t)||1!==e.length||"INPUT"!==e.get(0).tagName.toUpperCase()&&"TEXTAREA"!==e.get(0).tagName.toUpperCase())throw new Error("Invalid parameter for jquery.Autocompleter, jQuery object with one element with INPUT or TEXTAREA tag expected.");var r=this;this.options=n,this.cacheData_={},this.cacheLength_=0,this.selectClass_="jquery-autocomplete-selected-item",this.keyTimeout_=null,this.finishTimeout_=null,this.lastKeyPressed_=null,this.lastProcessedValue_=null,this.lastSelectedValue_=null,this.active_=!1,this.finishOnBlur_=!0,this.options.minChars=i(this.options.minChars,t.fn.autocomplete_verheul.defaults.minChars,{min:0}),this.options.maxItemsToShow=i(this.options.maxItemsToShow,t.fn.autocomplete_verheul.defaults.maxItemsToShow,{min:0}),this.options.maxCacheLength=i(this.options.maxCacheLength,t.fn.autocomplete_verheul.defaults.maxCacheLength,{min:1}),this.options.delay=i(this.options.delay,t.fn.autocomplete_verheul.defaults.delay,{min:0}),2!=this.options.preventDefaultReturn&&(this.options.preventDefaultReturn=this.options.preventDefaultReturn?1:0),2!=this.options.preventDefaultTab&&(this.options.preventDefaultTab=this.options.preventDefaultTab?1:0),this.dom={},this.dom.$elem=e,this.dom.$elem.attr("autocomplete","off").addClass(this.options.inputClass),this.dom.$results=t("<div></div>").hide().addClass(this.options.resultsClass).css({position:"absolute"}),t("body").append(this.dom.$results),e.keydown(function(t){switch(r.lastKeyPressed_=t.keyCode,r.lastKeyPressed_){case r.options.delimiterKeyCode:r.options.useDelimiter&&r.active_&&r.selectCurrent();break;case 35:case 36:case 16:case 17:case 18:case 37:case 39:break;case 38:return t.preventDefault(),r.active_?r.focusPrev():r.activate(),!1;case 40:return t.preventDefault(),r.active_?r.focusNext():r.activate(),!1;case 9:if(r.active_&&(r.selectCurrent(),r.options.preventDefaultTab))return t.preventDefault(),!1;if(2===r.options.preventDefaultTab)return t.preventDefault(),!1;break;case 13:if(r.active_&&(r.selectCurrent(),r.options.preventDefaultReturn))return t.preventDefault(),!1;if(2===r.options.preventDefaultReturn)return t.preventDefault(),!1;break;case 27:if(r.active_)return t.preventDefault(),r.deactivate(!0),!1;break;default:r.activate()}}),e.on("paste",function(){r.activate()});var a=function(){r.deactivate(!0)};e.blur(function(){r.finishOnBlur_&&(r.finishTimeout_=setTimeout(a,200))}),e.parents("form").on("submit",a)},t.Autocompleter.prototype.position=function(){var e=this.dom.$elem.offset(),i=this.dom.$results.outerHeight(),n=t(window).outerHeight(),r=e.top+this.dom.$elem.outerHeight(),a=r+i,o={top:r,left:e.left};if(a>n){var s=e.top-i;s>=0&&(o.top=s)}this.dom.$results.css(o)},t.Autocompleter.prototype.cacheRead=function(t){var e,i,n,r,a;if(this.options.useCache)for(t=String(t),e=t.length,i=this.options.matchSubset?1:e;i<=e;){for(r=this.options.matchInside?e-i:0,a=0;a<=r;){if(n=t.substr(0,i),void 0!==this.cacheData_[n])return this.cacheData_[n];a++}i++}return!1},t.Autocompleter.prototype.cacheWrite=function(t,e){return!!this.options.useCache&&(this.cacheLength_>=this.options.maxCacheLength&&this.cacheFlush(),t=String(t),void 0!==this.cacheData_[t]&&this.cacheLength_++,this.cacheData_[t]=e,this.cacheData_[t])},t.Autocompleter.prototype.cacheFlush=function(){this.cacheData_={},this.cacheLength_=0},t.Autocompleter.prototype.callHook=function(e,i){var n=this.options[e];return!(!n||!t.isFunction(n))&&n(i,this)},t.Autocompleter.prototype.activate=function(){if(this.options.enabled){var t=this;this.keyTimeout_&&clearTimeout(this.keyTimeout_),this.keyTimeout_=setTimeout(function(){t.activateNow()},this.options.delay)}},t.Autocompleter.prototype.activateNow=function(){var t=this.beforeUseConverter(this.dom.$elem.val());t!==this.lastProcessedValue_&&t!==this.lastSelectedValue_&&this.fetchData(t)},t.Autocompleter.prototype.fetchData=function(t){var e=this,i=function(t,i){e.options.processData&&(t=e.options.processData(t)),e.showResults(e.filterResults(t,i),i)};this.lastProcessedValue_=t,t.length<this.options.minChars?i([],t):this.options.data?i(this.options.data,t):this.fetchRemoteData(t,function(e){i(e,t)})},t.Autocompleter.prototype.fetchRemoteData=function(e,i){var n=this.cacheRead(e);if(n)i(n);else{var r=this,a="json"===r.options.remoteDataType?"json":"text",o=function(t){var n=!1;!1!==t&&(n=r.parseRemoteData(t),r.cacheWrite(e,n)),r.dom.$elem.removeClass(r.options.loadingClass),i(n)};this.dom.$elem.addClass(this.options.loadingClass),t.ajax({url:this.makeUrl(e),success:o,error:function(e,i,n){t.isFunction(r.options.onError)?r.options.onError(e,i,n):o(!1)},dataType:a})}},t.Autocompleter.prototype.setExtraParam=function(e,i){var n=t.trim(String(e));return n&&(this.options.extraParams||(this.options.extraParams={}),this.options.extraParams[n]!==i&&(this.options.extraParams[n]=i,this.cacheFlush())),this},t.Autocompleter.prototype.makeUrl=function(e){var i=this.options.url,n=t.extend({},this.options.extraParams);return!1===this.options.queryParamName?i+=encodeURIComponent(e):n[this.options.queryParamName]=e,r(i,n)},t.Autocompleter.prototype.parseRemoteData=function(e){var i,n=e;if("json"===this.options.remoteDataType){switch(i=typeof e){case"object":n=e;break;case"string":n=t.parseJSON(e);break;default:throw new Error("Unexpected remote data type: "+i)}return n}return o(n,this.options.lineSeparator,this.options.cellSeparator)},t.Autocompleter.prototype.defaultFilter=function(t,e){if(!t.value)return!1;if(this.options.filterResults){var i=this.matchStringConverter(e),n=this.matchStringConverter(t.value);this.options.matchCase||(i=i.toLowerCase(),n=n.toLowerCase());var r=n.indexOf(i);return this.options.matchInside?r>-1:0===r}return!0},t.Autocompleter.prototype.filterResult=function(e,i){return!1===this.options.filter||(t.isFunction(this.options.filter)?this.options.filter(e,i):this.defaultFilter(e,i))},t.Autocompleter.prototype.filterResults=function(t,i){var n,r,a=[];for(n=0;n<t.length;n++)r=e(t[n]),this.filterResult(r,i)&&a.push(r);return this.options.sortResults&&(a=this.sortResults(a,i)),this.options.maxItemsToShow>0&&this.options.maxItemsToShow<a.length&&(a.length=this.options.maxItemsToShow),a},t.Autocompleter.prototype.sortResults=function(e,i){var n=this,r=this.options.sortFunction;return t.isFunction(r)||(r=function(t,e,i){return a(t,e,n.options.matchCase)}),e.sort(function(t,e){return r(t,e,i,n.options)}),e},t.Autocompleter.prototype.matchStringConverter=function(e,i,n){var r=this.options.matchStringConverter;return t.isFunction(r)&&(e=r(e,i,n)),e},t.Autocompleter.prototype.beforeUseConverter=function(e){e=this.getValue(e);var i=this.options.beforeUseConverter;return t.isFunction(i)&&(e=i(e)),e},t.Autocompleter.prototype.enableFinishOnBlur=function(){this.finishOnBlur_=!0},t.Autocompleter.prototype.disableFinishOnBlur=function(){this.finishOnBlur_=!1},t.Autocompleter.prototype.createItemFromResult=function(e){var i=this,n=t("<li/>");return n.html(this.showResult(e.value,e.data)),n.data({value:e.value,data:e.data}).click(function(){i.selectItem(n)}).mousedown(i.disableFinishOnBlur).mouseup(i.enableFinishOnBlur),n},t.Autocompleter.prototype.getItems=function(){return t(">ul>li",this.dom.$results)},t.Autocompleter.prototype.showResults=function(e,i){var n,r,a,o,s=e.length,l=this,u=t("<ul></ul>"),c=!1,h=!1;if(s){for(n=0;n<s;n++)r=e[n],a=this.createItemFromResult(r),u.append(a),!1===c&&(c=String(r.value),h=a,a.addClass(this.options.firstItemClass)),n===s-1&&a.addClass(this.options.lastItemClass);this.dom.$results.html(u).show(),this.position(),this.options.autoWidth&&(o=this.dom.$elem.outerWidth()-this.dom.$results.outerWidth()+this.dom.$results.width(),this.dom.$results.css(this.options.autoWidth,o)),this.getItems().hover(function(){l.focusItem(this)},function(){}),(this.autoFill(c,i)||this.options.selectFirst||this.options.selectOnly&&1===s)&&this.focusItem(h),this.active_=!0}else this.hideResults(),this.active_=!1},t.Autocompleter.prototype.showResult=function(e,i){return t.isFunction(this.options.showResult)?this.options.showResult(e,i):t("<p></p>").text(e).html()},t.Autocompleter.prototype.autoFill=function(t,e){var i,n,r,a;if(this.options.autoFill&&8!==this.lastKeyPressed_&&(i=String(t).toLowerCase(),n=String(e).toLowerCase(),r=t.length,a=e.length,i.substr(0,a)===n)){var o=this.getDelimiterOffsets(),s=o.start?" 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e=t.data("value"),i=t.data("data"),n=this.displayValue(e,i),r=this.beforeUseConverter(n);this.lastProcessedValue_=r,this.lastSelectedValue_=r;var a=this.getDelimiterOffsets(),o=this.options.delimiterChar,s=this.dom.$elem,l=0;this.options.useDelimiter&&(s.val().substring(a.start-1,a.start)==o&&" "!=o&&(n=" "+n),s.val().substring(a.end,a.end+1)!=o&&this.lastKeyPressed_!=this.options.delimiterKeyCode?n+=o:l=1),this.setValue(n),this.setCaret(a.start+n.length+l),this.callHook("onItemSelect",{value:e,data:i}),this.deactivate(!0),s.focus()},t.Autocompleter.prototype.displayValue=function(e,i){return t.isFunction(this.options.displayValue)?this.options.displayValue(e,i):e},t.Autocompleter.prototype.hideResults=function(){this.dom.$results.hide()},t.Autocompleter.prototype.deactivate=function(t){this.finishTimeout_&&clearTimeout(this.finishTimeout_),this.keyTimeout_&&clearTimeout(this.keyTimeout_),t&&(this.lastProcessedValue_!==this.lastSelectedValue_&&(this.options.mustMatch&&this.setValue(""),this.callHook("onNoMatch")),this.active_&&this.callHook("onFinish"),this.lastKeyPressed_=null,this.lastProcessedValue_=null,this.lastSelectedValue_=null,this.active_=!1),this.hideResults()},t.Autocompleter.prototype.selectRange=function(t,e){var i=this.dom.$elem.get(0);if(i.setSelectionRange)i.focus(),i.setSelectionRange(t,e);else if(i.createTextRange){var n=i.createTextRange();n.collapse(!0),n.moveEnd("character",e),n.moveStart("character",t),n.select()}},t.Autocompleter.prototype.setCaret=function(t){this.selectRange(t,t)},t.Autocompleter.prototype.getCaret=function(){var t,e,i,n,r,a,o=this.dom.$elem,s=o[0];return s.createTextRange?(e=document.selection,"textarea"!=s.tagName.toLowerCase()?(t=o.val(),i=e.createRange().duplicate(),i.moveEnd("character",t.length),n=""===i.text?t.length:t.lastIndexOf(i.text),i=e.createRange().duplicate(),i.moveStart("character",-t.length),r=i.text.length):(i=e.createRange(),a=i.duplicate(),a.moveToElementText(s),a.setEndPoint("EndToEnd",i),n=a.text.length-i.text.length,r=n+i.text.length)):(n=o[0].selectionStart,r=o[0].selectionEnd),{start:n,end:r}},t.Autocompleter.prototype.setValue=function(t){if(this.options.useDelimiter){var e=this.dom.$elem.val(),i=this.getDelimiterOffsets();t=e.substring(0,i.start)+t+e.substring(i.end)}this.dom.$elem.val(t)},t.Autocompleter.prototype.getValue=function(t){if(this.options.useDelimiter){var e=this.getDelimiterOffsets();return t.substring(e.start,e.end).trim()}return t},t.Autocompleter.prototype.getDelimiterOffsets=function(){var t=this.dom.$elem.val();if(this.options.useDelimiter){var e=t.substring(0,this.getCaret().start),i=e.lastIndexOf(this.options.delimiterChar)+1,n=t.substring(this.getCaret().start),r=n.indexOf(this.options.delimiterChar);-1==r&&(r=t.length),r+=this.getCaret().start}else i=0,r=t.length;return{start:i,end:r}}}(t)}).call(e,i(0))},function(t,e,i){var n,r,a;!function(o,s,l){!function(o){r=[i(0)],n=o,void 0!==(a="function"==typeof n?n.apply(e,r):n)&&(t.exports=a)}(function(t){"use strict";var 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$(t,e,i,n)};else{if(!o.namespaces||o.namespaces.v)return t.fn.sparkline.canvas=!1,!1;o.namespaces.add("v","urn:schemas-microsoft-com:vml","#default#VML"),t.fn.sparkline.canvas=function(t,e,i,n){return new D(t,e,i)}}}return void 0===e&&(e=t(this).innerWidth()),void 0===i&&(i=t(this).innerHeight()),a=t.fn.sparkline.canvas(e,i,this,r),s=t(this).data("_jqs_mhandler"),s&&s.registerCanvas(a),a},t.fn.cleardraw=function(){var t=this.data("_jqs_vcanvas");t&&t.reset()},t.RangeMapClass=v=i({init:function(t){var e,i,n=[];for(e in t)t.hasOwnProperty(e)&&"string"==typeof e&&e.indexOf(":")>-1&&(i=e.split(":"),i[0]=0===i[0].length?-1/0:parseFloat(i[0]),i[1]=0===i[1].length?1/0:parseFloat(i[1]),i[2]=t[e],n.push(i));this.map=t,this.rangelist=n||!1},get:function(t){var e,i,n,r=this.rangelist;if(void 0!==(n=this.map[t]))return n;if(r)for(e=r.length;e--;)if(i=r[e],i[0]<=t&&i[1]>=t)return i[2]}}),t.range_map=function(t){return new v(t)},g=i({init:function(e,i){var n=t(e);this.$el=n,this.options=i,this.currentPageX=0,this.currentPageY=0,this.el=e,this.splist=[],this.tooltip=null,this.over=!1,this.displayTooltips=!i.get("disableTooltips"),this.highlightEnabled=!i.get("disableHighlight")},registerSparkline:function(t){this.splist.push(t),this.over&&this.updateDisplay()},registerCanvas:function(e){var i=t(e.canvas);this.canvas=e,this.$canvas=i,i.mouseenter(t.proxy(this.mouseenter,this)),i.mouseleave(t.proxy(this.mouseleave,this)),i.click(t.proxy(this.mouseclick,this))},reset:function(t){this.splist=[],this.tooltip&&t&&(this.tooltip.remove(),this.tooltip=void 0)},mouseclick:function(e){var i=t.Event("sparklineClick");i.originalEvent=e,i.sparklines=this.splist,this.$el.trigger(i)},mouseenter:function(e){t(o.body).unbind("mousemove.jqs"),t(o.body).bind("mousemove.jqs",t.proxy(this.mousemove,this)),this.over=!0,this.currentPageX=e.pageX,this.currentPageY=e.pageY,this.currentEl=e.target,!this.tooltip&&this.displayTooltips&&(this.tooltip=new _(this.options),this.tooltip.updatePosition(e.pageX,e.pageY)),this.updateDisplay()},mouseleave:function(){t(o.body).unbind("mousemove.jqs");var e,i,n=this.splist,r=n.length,a=!1;for(this.over=!1,this.currentEl=null,this.tooltip&&(this.tooltip.remove(),this.tooltip=null),i=0;i<r;i++)e=n[i],e.clearRegionHighlight()&&(a=!0);a&&this.canvas.render()},mousemove:function(t){this.currentPageX=t.pageX,this.currentPageY=t.pageY,this.currentEl=t.target,this.tooltip&&this.tooltip.updatePosition(t.pageX,t.pageY),this.updateDisplay()},updateDisplay:function(){var e,i,n,r,a,o=this.splist,s=o.length,l=!1,u=this.$canvas.offset(),c=this.currentPageX-u.left,h=this.currentPageY-u.top;if(this.over){for(n=0;n<s;n++)i=o[n],(r=i.setRegionHighlight(this.currentEl,c,h))&&(l=!0);if(l){if(a=t.Event("sparklineRegionChange"),a.sparklines=this.splist,this.$el.trigger(a),this.tooltip){for(e="",n=0;n<s;n++)i=o[n],e+=i.getCurrentRegionTooltip();this.tooltip.setContent(e)}this.disableHighlight||this.canvas.render()}null===r&&this.mouseleave()}}}),_=i({sizeStyle:"position: static !important;display: block !important;visibility: hidden !important;float: left !important;",init:function(e){var i,n=e.get("tooltipClassname","jqstooltip"),r=this.sizeStyle;this.container=e.get("tooltipContainer")||o.body,this.tooltipOffsetX=e.get("tooltipOffsetX",10),this.tooltipOffsetY=e.get("tooltipOffsetY",12),t("#jqssizetip").remove(),t("#jqstooltip").remove(),this.sizetip=t("<div/>",{id:"jqssizetip",style:r,class:n}),this.tooltip=t("<div/>",{id:"jqstooltip",class:n}).appendTo(this.container),i=this.tooltip.offset(),this.offsetLeft=i.left,this.offsetTop=i.top,this.hidden=!0,t(window).unbind("resize.jqs scroll.jqs"),t(window).bind("resize.jqs scroll.jqs",t.proxy(this.updateWindowDims,this)),this.updateWindowDims()},updateWindowDims:function(){this.scrollTop=t(window).scrollTop(),this.scrollLeft=t(window).scrollLeft(),this.scrollRight=this.scrollLeft+t(window).width(),this.updatePosition()},getSize:function(t){this.sizetip.html(t).appendTo(this.container),this.width=this.sizetip.width()+1,this.height=this.sizetip.height(),this.sizetip.remove()},setContent:function(t){if(!t)return this.tooltip.css("visibility","hidden"),void(this.hidden=!0);this.getSize(t),this.tooltip.html(t).css({width:this.width,height:this.height,visibility:"visible"}),this.hidden&&(this.hidden=!1,this.updatePosition())},updatePosition:function(t,e){if(void 0===t){if(void 0===this.mousex)return;t=this.mousex-this.offsetLeft,e=this.mousey-this.offsetTop}else this.mousex=t-=this.offsetLeft,this.mousey=e-=this.offsetTop;this.height&&this.width&&!this.hidden&&(e-=this.height+this.tooltipOffsetY,t+=this.tooltipOffsetX,e<this.scrollTop&&(e=this.scrollTop),t<this.scrollLeft?t=this.scrollLeft:t+this.width>this.scrollRight&&(t=this.scrollRight-this.width),this.tooltip.css({left:t,top:e}))},remove:function(){this.tooltip.remove(),this.sizetip.remove(),this.sizetip=this.tooltip=void 0,t(window).unbind("resize.jqs scroll.jqs")}}),M=function(){f(A)},t(M),j=[],t.fn.sparkline=function(e,i){return this.each(function(){var n,r,a=new t.fn.sparkline.options(this,i),s=t(this);if(n=function(){var i,n,r,l,u,c,h;if("html"===e||void 0===e?(h=this.getAttribute(a.get("tagValuesAttribute")),void 0!==h&&null!==h||(h=s.html()),i=h.replace(/(^\s*<!--)|(-->\s*$)|\s+/g,"").split(",")):i=e,n="auto"===a.get("width")?i.length*a.get("defaultPixelsPerValue"):a.get("width"),"auto"===a.get("height")?a.get("composite")&&t.data(this,"_jqs_vcanvas")||(l=o.createElement("span"),l.innerHTML="a",s.html(l),r=t(l).innerHeight()||t(l).height(),t(l).remove(),l=null):r=a.get("height"),a.get("disableInteraction")?u=!1:(u=t.data(this,"_jqs_mhandler"),u?a.get("composite")||u.reset():(u=new g(this,a),t.data(this,"_jqs_mhandler",u))),a.get("composite")&&!t.data(this,"_jqs_vcanvas"))return void(t.data(this,"_jqs_errnotify")||(alert("Attempted to attach a composite sparkline to an element with no existing sparkline"),t.data(this,"_jqs_errnotify",!0)));c=new(t.fn.sparkline[a.get("type")])(this,i,a,n,r),c.render(),u&&u.registerSparkline(c)},t(this).html()&&!a.get("disableHiddenCheck")&&t(this).is(":hidden")||!t(this).parents("body").length){if(!a.get("composite")&&t.data(this,"_jqs_pending"))for(r=j.length;r;r--)j[r-1][0]==this&&j.splice(r-1,1);j.push([this,n]),t.data(this,"_jqs_pending",!0)}else n.call(this)})},t.fn.sparkline.defaults=e(),t.sparkline_display_visible=function(){var e,i,n,r=[];for(i=0,n=j.length;i<n;i++)e=j[i][0],t(e).is(":visible")&&!t(e).parents().is(":hidden")?(j[i][1].call(e),t.data(j[i][0],"_jqs_pending",!1),r.push(i)):t(e).closest("html").length||t.data(e,"_jqs_pending")||(t.data(j[i][0],"_jqs_pending",!1),r.push(i));for(i=r.length;i;i--)j.splice(r[i-1],1)},t.fn.sparkline.options=i({init:function(e,i){var n,r,a,o;this.userOptions=i=i||{},this.tag=e,this.tagValCache={},r=t.fn.sparkline.defaults,a=r.common,this.tagOptionsPrefix=i.enableTagOptions&&(i.tagOptionsPrefix||a.tagOptionsPrefix),o=this.getTagSetting("type"),n=o===R?r[i.type||a.type]:r[o],this.mergedOptions=t.extend({},a,n,i)},getTagSetting:function(t){var e,i,n,r,a=this.tagOptionsPrefix;if(!1===a||void 0===a)return R;if(this.tagValCache.hasOwnProperty(t))e=this.tagValCache.key;else{if(void 0===(e=this.tag.getAttribute(a+t))||null===e)e=R;else if("["===e.substr(0,1))for(e=e.substr(1,e.length-2).split(","),i=e.length;i--;)e[i]=l(e[i].replace(/(^\s*)|(\s*$)/g,""));else if("{"===e.substr(0,1))for(n=e.substr(1,e.length-2).split(","),e={},i=n.length;i--;)r=n[i].split(":",2),e[r[0].replace(/(^\s*)|(\s*$)/g,"")]=l(r[1].replace(/(^\s*)|(\s*$)/g,""));else e=l(e);this.tagValCache.key=e}return e},get:function(t,e){var i,n=this.getTagSetting(t);return n!==R?n:void 0===(i=this.mergedOptions[t])?e:i}}),t.fn.sparkline._base=i({disabled:!1,init:function(e,i,n,r,a){this.el=e,this.$el=t(e),this.values=i,this.options=n,this.width=r,this.height=a,this.currentRegion=void 0},initTarget:function(){var t=!this.options.get("disableInteraction");(this.target=this.$el.simpledraw(this.width,this.height,this.options.get("composite"),t))?(this.canvasWidth=this.target.pixelWidth,this.canvasHeight=this.target.pixelHeight):this.disabled=!0},render:function(){return!this.disabled||(this.el.innerHTML="",!1)},getRegion:function(t,e){},setRegionHighlight:function(t,e,i){var n,r=this.currentRegion,a=!this.options.get("disableHighlight");return e>this.canvasWidth||i>this.canvasHeight||e<0||i<0?null:(n=this.getRegion(t,e,i),r!==n&&(void 0!==r&&a&&this.removeHighlight(),this.currentRegion=n,void 0!==n&&a&&this.renderHighlight(),!0))},clearRegionHighlight:function(){return void 0!==this.currentRegion&&(this.removeHighlight(),this.currentRegion=void 0,!0)},renderHighlight:function(){this.changeHighlight(!0)},removeHighlight:function(){this.changeHighlight(!1)},changeHighlight:function(t){},getCurrentRegionTooltip:function(){var e,i,r,a,o,s,l,u,c,h,d,f,p,m,v=this.options,g="",_=[];if(void 0===this.currentRegion)return"";if(e=this.getCurrentRegionFields(),d=v.get("tooltipFormatter"))return d(this,v,e);if(v.get("tooltipChartTitle")&&(g+='<div class="jqs jqstitle">'+v.get("tooltipChartTitle")+"</div>\n"),!(i=this.options.get("tooltipFormat")))return"";if(t.isArray(i)||(i=[i]),t.isArray(e)||(e=[e]),l=this.options.get("tooltipFormatFieldlist"),u=this.options.get("tooltipFormatFieldlistKey"),l&&u){for(c=[],s=e.length;s--;)h=e[s][u],-1!=(m=t.inArray(h,l))&&(c[m]=e[s]);e=c}for(r=i.length,p=e.length,s=0;s<r;s++)for(f=i[s],"string"==typeof f&&(f=new n(f)),a=f.fclass||"jqsfield",m=0;m<p;m++)e[m].isNull&&v.get("tooltipSkipNull")||(t.extend(e[m],{prefix:v.get("tooltipPrefix"),suffix:v.get("tooltipSuffix")}),o=f.render(e[m],v.get("tooltipValueLookups"),v),_.push('<div class="'+a+'">'+o+"</div>"));return _.length?g+_.join("\n"):""},getCurrentRegionFields:function(){},calcHighlightColor:function(t,e){var i,n,a,o,l=e.get("highlightColor"),u=e.get("highlightLighten");if(l)return l;if(u&&(i=/^#([0-9a-f])([0-9a-f])([0-9a-f])$/i.exec(t)||/^#([0-9a-f]{2})([0-9a-f]{2})([0-9a-f]{2})$/i.exec(t))){for(a=[],n=4===t.length?16:1,o=0;o<3;o++)a[o]=r(s.round(parseInt(i[o+1],16)*n*u),0,255);return"rgb("+a.join(",")+")"}return t}}),y={changeHighlight:function(e){var i,n=this.currentRegion,r=this.target,a=this.regionShapes[n];a&&(i=this.renderRegion(n,e),t.isArray(i)||t.isArray(a)?(r.replaceWithShapes(a,i),this.regionShapes[n]=t.map(i,function(t){return t.id})):(r.replaceWithShape(a,i),this.regionShapes[n]=i.id))},render:function(){var e,i,n,r,a=this.values,o=this.target,s=this.regionShapes;if(this.cls._super.render.call(this)){for(n=a.length;n--;)if(e=this.renderRegion(n))if(t.isArray(e)){for(i=[],r=e.length;r--;)e[r].append(),i.push(e[r].id);s[n]=i}else e.append(),s[n]=e.id;else s[n]=null;o.render()}}},t.fn.sparkline.line=b=i(t.fn.sparkline._base,{type:"line",init:function(t,e,i,n,r){b._super.init.call(this,t,e,i,n,r),this.vertices=[],this.regionMap=[],this.xvalues=[],this.yvalues=[],this.yminmax=[],this.hightlightSpotId=null,this.lastShapeId=null,this.initTarget()},getRegion:function(t,e,i){var n,r=this.regionMap;for(n=r.length;n--;)if(null!==r[n]&&e>=r[n][0]&&e<=r[n][1])return r[n][2]},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:null===this.yvalues[t],x:this.xvalues[t],y:this.yvalues[t],color:this.options.get("lineColor"),fillColor:this.options.get("fillColor"),offset:t}},renderHighlight:function(){var t,e,i=this.currentRegion,n=this.target,r=this.vertices[i],a=this.options,o=a.get("spotRadius"),s=a.get("highlightSpotColor"),l=a.get("highlightLineColor");r&&(o&&s&&(t=n.drawCircle(r[0],r[1],o,void 0,s),this.highlightSpotId=t.id,n.insertAfterShape(this.lastShapeId,t)),l&&(e=n.drawLine(r[0],this.canvasTop,r[0],this.canvasTop+this.canvasHeight,l),this.highlightLineId=e.id,n.insertAfterShape(this.lastShapeId,e)))},removeHighlight:function(){var t=this.target;this.highlightSpotId&&(t.removeShapeId(this.highlightSpotId),this.highlightSpotId=null),this.highlightLineId&&(t.removeShapeId(this.highlightLineId),this.highlightLineId=null)},scanValues:function(){var t,e,i,n,r,a=this.values,o=a.length,l=this.xvalues,u=this.yvalues,c=this.yminmax;for(t=0;t<o;t++)e=a[t],i="string"==typeof a[t],n="object"==typeof a[t]&&a[t]instanceof Array,r=i&&a[t].split(":"),i&&2===r.length?(l.push(Number(r[0])),u.push(Number(r[1])),c.push(Number(r[1]))):n?(l.push(e[0]),u.push(e[1]),c.push(e[1])):(l.push(t),null===a[t]||"null"===a[t]?u.push(null):(u.push(Number(e)),c.push(Number(e))));this.options.get("xvalues")&&(l=this.options.get("xvalues")),this.maxy=this.maxyorg=s.max.apply(s,c),this.miny=this.minyorg=s.min.apply(s,c),this.maxx=s.max.apply(s,l),this.minx=s.min.apply(s,l),this.xvalues=l,this.yvalues=u,this.yminmax=c},processRangeOptions:function(){var t=this.options,e=t.get("normalRangeMin"),i=t.get("normalRangeMax");void 0!==e&&(e<this.miny&&(this.miny=e),i>this.maxy&&(this.maxy=i)),void 0!==t.get("chartRangeMin")&&(t.get("chartRangeClip")||t.get("chartRangeMin")<this.miny)&&(this.miny=t.get("chartRangeMin")),void 0!==t.get("chartRangeMax")&&(t.get("chartRangeClip")||t.get("chartRangeMax")>this.maxy)&&(this.maxy=t.get("chartRangeMax")),void 0!==t.get("chartRangeMinX")&&(t.get("chartRangeClipX")||t.get("chartRangeMinX")<this.minx)&&(this.minx=t.get("chartRangeMinX")),void 0!==t.get("chartRangeMaxX")&&(t.get("chartRangeClipX")||t.get("chartRangeMaxX")>this.maxx)&&(this.maxx=t.get("chartRangeMaxX"))},drawNormalRange:function(t,e,i,n,r){var a=this.options.get("normalRangeMin"),o=this.options.get("normalRangeMax"),l=e+s.round(i-i*((o-this.miny)/r)),u=s.round(i*(o-a)/r);this.target.drawRect(t,l,n,u,void 0,this.options.get("normalRangeColor")).append()},render:function(){var e,i,n,r,a,o,l,u,c,h,d,f,p,m,g,_,y,w,x,k,C,S,T,A,M,E=this.options,O=this.target,$=this.canvasWidth,D=this.canvasHeight,j=this.vertices,R=E.get("spotRadius"),P=this.regionMap;if(b._super.render.call(this)&&(this.scanValues(),this.processRangeOptions(),T=this.xvalues,A=this.yvalues,this.yminmax.length&&!(this.yvalues.length<2))){for(r=a=0,e=this.maxx-this.minx==0?1:this.maxx-this.minx,i=this.maxy-this.miny==0?1:this.maxy-this.miny,n=this.yvalues.length-1,R&&($<4*R||D<4*R)&&(R=0),R&&(C=E.get("highlightSpotColor")&&!E.get("disableInteraction"),(C||E.get("minSpotColor")||E.get("spotColor")&&A[n]===this.miny)&&(D-=s.ceil(R)),(C||E.get("maxSpotColor")||E.get("spotColor")&&A[n]===this.maxy)&&(D-=s.ceil(R),r+=s.ceil(R)),(C||(E.get("minSpotColor")||E.get("maxSpotColor"))&&(A[0]===this.miny||A[0]===this.maxy))&&(a+=s.ceil(R),$-=s.ceil(R)),(C||E.get("spotColor")||E.get("minSpotColor")||E.get("maxSpotColor")&&(A[n]===this.miny||A[n]===this.maxy))&&($-=s.ceil(R))),D--,void 0===E.get("normalRangeMin")||E.get("drawNormalOnTop")||this.drawNormalRange(a,r,D,$,i),l=[],u=[l],m=g=null,_=A.length,M=0;M<_;M++)c=T[M],d=T[M+1],h=A[M],f=a+s.round((c-this.minx)*($/e)),p=M<_-1?a+s.round((d-this.minx)*($/e)):$,g=f+(p-f)/2,P[M]=[m||0,g,M],m=g,null===h?M&&(null!==A[M-1]&&(l=[],u.push(l)),j.push(null)):(h<this.miny&&(h=this.miny),h>this.maxy&&(h=this.maxy),l.length||l.push([f,r+D]),o=[f,r+s.round(D-D*((h-this.miny)/i))],l.push(o),j.push(o));for(y=[],w=[],x=u.length,M=0;M<x;M++)l=u[M],l.length&&(E.get("fillColor")&&(l.push([l[l.length-1][0],r+D]),w.push(l.slice(0)),l.pop()),l.length>2&&(l[0]=[l[0][0],l[1][1]]),y.push(l));for(x=w.length,M=0;M<x;M++)O.drawShape(w[M],E.get("fillColor"),E.get("fillColor")).append();for(void 0!==E.get("normalRangeMin")&&E.get("drawNormalOnTop")&&this.drawNormalRange(a,r,D,$,i),x=y.length,M=0;M<x;M++)O.drawShape(y[M],E.get("lineColor"),void 0,E.get("lineWidth")).append();if(R&&E.get("valueSpots"))for(k=E.get("valueSpots"),void 0===k.get&&(k=new v(k)),M=0;M<_;M++)(S=k.get(A[M]))&&O.drawCircle(a+s.round((T[M]-this.minx)*($/e)),r+s.round(D-D*((A[M]-this.miny)/i)),R,void 0,S).append();R&&E.get("spotColor")&&null!==A[n]&&O.drawCircle(a+s.round((T[T.length-1]-this.minx)*($/e)),r+s.round(D-D*((A[n]-this.miny)/i)),R,void 0,E.get("spotColor")).append(),this.maxy!==this.minyorg&&(R&&E.get("minSpotColor")&&(c=T[t.inArray(this.minyorg,A)],O.drawCircle(a+s.round((c-this.minx)*($/e)),r+s.round(D-D*((this.minyorg-this.miny)/i)),R,void 0,E.get("minSpotColor")).append()),R&&E.get("maxSpotColor")&&(c=T[t.inArray(this.maxyorg,A)],O.drawCircle(a+s.round((c-this.minx)*($/e)),r+s.round(D-D*((this.maxyorg-this.miny)/i)),R,void 0,E.get("maxSpotColor")).append())),this.lastShapeId=O.getLastShapeId(),this.canvasTop=r,O.render()}}}),t.fn.sparkline.bar=w=i(t.fn.sparkline._base,y,{type:"bar",init:function(e,i,n,a,o){var h,d,f,p,m,g,_,y,b,x,k,C,S,T,A,M,E,O,$,D,j,R,P=parseInt(n.get("barWidth"),10),N=parseInt(n.get("barSpacing"),10),I=n.get("chartRangeMin"),L=n.get("chartRangeMax"),H=n.get("chartRangeClip"),z=1/0,q=-1/0;for(w._super.init.call(this,e,i,n,a,o),g=0,_=i.length;g<_;g++)D=i[g],((h="string"==typeof D&&D.indexOf(":")>-1)||t.isArray(D))&&(A=!0,h&&(D=i[g]=u(D.split(":"))),D=c(D,null),d=s.min.apply(s,D),f=s.max.apply(s,D),d<z&&(z=d),f>q&&(q=f));this.stacked=A,this.regionShapes={},this.barWidth=P,this.barSpacing=N,this.totalBarWidth=P+N,this.width=a=i.length*P+(i.length-1)*N,this.initTarget(),H&&(S=void 0===I?-1/0:I,T=void 0===L?1/0:L),m=[],p=A?[]:m;var F=[],B=[];for(g=0,_=i.length;g<_;g++)if(A)for(M=i[g],i[g]=$=[],F[g]=0,p[g]=B[g]=0,E=0,O=M.length;E<O;E++)null!==(D=$[E]=H?r(M[E],S,T):M[E])&&(D>0&&(F[g]+=D),z<0&&q>0?D<0?B[g]+=s.abs(D):p[g]+=D:p[g]+=s.abs(D-(D<0?q:z)),m.push(D));else D=H?r(i[g],S,T):i[g],null!==(D=i[g]=l(D))&&m.push(D);this.max=C=s.max.apply(s,m),this.min=k=s.min.apply(s,m),this.stackMax=q=A?s.max.apply(s,F):C,this.stackMin=z=A?s.min.apply(s,m):k,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<k)&&(k=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>C)&&(C=n.get("chartRangeMax")),this.zeroAxis=b=n.get("zeroAxis",!0),x=k<=0&&C>=0&&b?0:0==b?k:k>0?k:C,this.xaxisOffset=x,y=A?s.max.apply(s,p)+s.max.apply(s,B):C-k,this.canvasHeightEf=b&&k<0?this.canvasHeight-2:this.canvasHeight-1,k<x?(R=A&&C>=0?q:C,(j=(R-x)/y*this.canvasHeight)!==s.ceil(j)&&(this.canvasHeightEf-=2,j=s.ceil(j))):j=this.canvasHeight,this.yoffset=j,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new v(this.colorMapByValue))),this.range=y},getRegion:function(t,e,i){var n=s.floor(e/this.totalBarWidth);return n<0||n>=this.values.length?void 0:n},getCurrentRegionFields:function(){var t,e,i=this.currentRegion,n=p(this.values[i]),r=[];for(e=n.length;e--;)t=n[e],r.push({isNull:null===t,value:t,color:this.calcColor(e,t,i),offset:i});return r},calcColor:function(e,i,n){var r,a,o=this.colorMapByIndex,s=this.colorMapByValue,l=this.options;return r=this.stacked?l.get("stackedBarColor"):i<0?l.get("negBarColor"):l.get("barColor"),0===i&&void 0!==l.get("zeroColor")&&(r=l.get("zeroColor")),s&&(a=s.get(i))?r=a:o&&o.length>n&&(r=o[n]),t.isArray(r)?r[e%r.length]:r},renderRegion:function(e,i){var n,r,a,o,l,u,c,h,f,p,m=this.values[e],v=this.options,g=this.xaxisOffset,_=[],y=this.range,b=this.stacked,w=this.target,x=e*this.totalBarWidth,k=this.canvasHeightEf,C=this.yoffset;if(m=t.isArray(m)?m:[m],c=m.length,h=m[0],o=d(null,m),p=d(g,m,!0),o)return v.get("nullColor")?(a=i?v.get("nullColor"):this.calcHighlightColor(v.get("nullColor"),v),n=C>0?C-1:C,w.drawRect(x,n,this.barWidth-1,0,a,a)):void 0;for(l=C,u=0;u<c;u++){if(h=m[u],b&&h===g){if(!p||f)continue;f=!0}r=y>0?s.floor(k*(s.abs(h-g)/y))+1:1,h<g||h===g&&0===C?(n=l,l+=r):(n=C-r,C-=r),a=this.calcColor(u,h,e),i&&(a=this.calcHighlightColor(a,v)),_.push(w.drawRect(x,n,this.barWidth-1,r-1,a,a))}return 1===_.length?_[0]:_}}),t.fn.sparkline.tristate=x=i(t.fn.sparkline._base,y,{type:"tristate",init:function(e,i,n,r,a){var o=parseInt(n.get("barWidth"),10),s=parseInt(n.get("barSpacing"),10);x._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.barWidth=o,this.barSpacing=s,this.totalBarWidth=o+s,this.values=t.map(i,Number),this.width=r=i.length*o+(i.length-1)*s,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new v(this.colorMapByValue))),this.initTarget()},getRegion:function(t,e,i){return s.floor(e/this.totalBarWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],color:this.calcColor(this.values[t],t),offset:t}},calcColor:function(t,e){var i,n=this.values,r=this.options,a=this.colorMapByIndex,o=this.colorMapByValue;return o&&(i=o.get(t))?i:a&&a.length>e?a[e]:n[e]<0?r.get("negBarColor"):n[e]>0?r.get("posBarColor"):r.get("zeroBarColor")},renderRegion:function(t,e){var i,n,r,a,o,l,u=this.values,c=this.options,h=this.target;if(i=h.pixelHeight,r=s.round(i/2),a=t*this.totalBarWidth,u[t]<0?(o=r,n=r-1):u[t]>0?(o=0,n=r-1):(o=r-1,n=2),null!==(l=this.calcColor(u[t],t)))return e&&(l=this.calcHighlightColor(l,c)),h.drawRect(a,o,this.barWidth-1,n-1,l,l)}}),t.fn.sparkline.discrete=k=i(t.fn.sparkline._base,y,{type:"discrete",init:function(e,i,n,r,a){k._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.values=i=t.map(i,Number),this.min=s.min.apply(s,i),this.max=s.max.apply(s,i),this.range=this.max-this.min,this.width=r="auto"===n.get("width")?2*i.length:this.width,this.interval=s.floor(r/i.length),this.itemWidth=r/i.length,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<this.min)&&(this.min=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>this.max)&&(this.max=n.get("chartRangeMax")),this.initTarget(),this.target&&(this.lineHeight="auto"===n.get("lineHeight")?s.round(.3*this.canvasHeight):n.get("lineHeight"))},getRegion:function(t,e,i){return s.floor(e/this.itemWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],offset:t}},renderRegion:function(t,e){var i,n,a,o,l=this.values,u=this.options,c=this.min,h=this.max,d=this.range,f=this.interval,p=this.target,m=this.canvasHeight,v=this.lineHeight,g=m-v;return n=r(l[t],c,h),o=t*f,i=s.round(g-g*((n-c)/d)),a=u.get("thresholdColor")&&n<u.get("thresholdValue")?u.get("thresholdColor"):u.get("lineColor"),e&&(a=this.calcHighlightColor(a,u)),p.drawLine(o,i,o,i+v,a)}}),t.fn.sparkline.bullet=C=i(t.fn.sparkline._base,{type:"bullet",init:function(t,e,i,n,r){var a,o,l;C._super.init.call(this,t,e,i,n,r),this.values=e=u(e),l=e.slice(),l[0]=null===l[0]?l[2]:l[0],l[1]=null===e[1]?l[2]:l[1],a=s.min.apply(s,e),o=s.max.apply(s,e),a=void 0===i.get("base")?a<0?a:0:i.get("base"),this.min=a,this.max=o,this.range=o-a,this.shapes={},this.valueShapes={},this.regiondata={},this.width=n="auto"===i.get("width")?"4.0em":n,this.target=this.$el.simpledraw(n,r,i.get("composite")),e.length||(this.disabled=!0),this.initTarget()},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{fieldkey:t.substr(0,1),value:this.values[t.substr(1)],region:t}},changeHighlight:function(t){var e,i=this.currentRegion,n=this.valueShapes[i];switch(delete this.shapes[n],i.substr(0,1)){case"r":e=this.renderRange(i.substr(1),t);break;case"p":e=this.renderPerformance(t);break;case"t":e=this.renderTarget(t)}this.valueShapes[i]=e.id,this.shapes[e.id]=i,this.target.replaceWithShape(n,e)},renderRange:function(t,e){var i=this.values[t],n=s.round(this.canvasWidth*((i-this.min)/this.range)),r=this.options.get("rangeColors")[t-2];return e&&(r=this.calcHighlightColor(r,this.options)),this.target.drawRect(0,0,n-1,this.canvasHeight-1,r,r)},renderPerformance:function(t){var e=this.values[1],i=s.round(this.canvasWidth*((e-this.min)/this.range)),n=this.options.get("performanceColor");return t&&(n=this.calcHighlightColor(n,this.options)),this.target.drawRect(0,s.round(.3*this.canvasHeight),i-1,s.round(.4*this.canvasHeight)-1,n,n)},renderTarget:function(t){var e=this.values[0],i=s.round(this.canvasWidth*((e-this.min)/this.range)-this.options.get("targetWidth")/2),n=s.round(.1*this.canvasHeight),r=this.canvasHeight-2*n,a=this.options.get("targetColor");return t&&(a=this.calcHighlightColor(a,this.options)),this.target.drawRect(i,n,this.options.get("targetWidth")-1,r-1,a,a)},render:function(){var t,e,i=this.values.length,n=this.target;if(C._super.render.call(this)){for(t=2;t<i;t++)e=this.renderRange(t).append(),this.shapes[e.id]="r"+t,this.valueShapes["r"+t]=e.id;null!==this.values[1]&&(e=this.renderPerformance().append(),this.shapes[e.id]="p1",this.valueShapes.p1=e.id),null!==this.values[0]&&(e=this.renderTarget().append(),this.shapes[e.id]="t0",this.valueShapes.t0=e.id),n.render()}}}),t.fn.sparkline.pie=S=i(t.fn.sparkline._base,{type:"pie",init:function(e,i,n,r,a){var o,l=0;if(S._super.init.call(this,e,i,n,r,a),this.shapes={},this.valueShapes={},this.values=i=t.map(i,Number),"auto"===n.get("width")&&(this.width=this.height),i.length>0)for(o=i.length;o--;)l+=i[o];this.total=l,this.initTarget(),this.radius=s.floor(s.min(this.canvasWidth,this.canvasHeight)/2)},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],percent:this.values[t]/this.total*100,color:this.options.get("sliceColors")[t%this.options.get("sliceColors").length],offset:t}},changeHighlight:function(t){var e=this.currentRegion,i=this.renderSlice(e,t),n=this.valueShapes[e];delete this.shapes[n],this.target.replaceWithShape(n,i),this.valueShapes[e]=i.id,this.shapes[i.id]=e},renderSlice:function(t,e){var i,n,r,a,o,l=this.target,u=this.options,c=this.radius,h=u.get("borderWidth"),d=u.get("offset"),f=2*s.PI,p=this.values,m=this.total,v=d?2*s.PI*(d/360):0;for(a=p.length,r=0;r<a;r++){if(i=v,n=v,m>0&&(n=v+f*(p[r]/m)),t===r)return o=u.get("sliceColors")[r%u.get("sliceColors").length],e&&(o=this.calcHighlightColor(o,u)),l.drawPieSlice(c,c,c-h,i,n,void 0,o);v=n}},render:function(){var t,e,i=this.target,n=this.values,r=this.options,a=this.radius,o=r.get("borderWidth");if(S._super.render.call(this)){for(o&&i.drawCircle(a,a,s.floor(a-o/2),r.get("borderColor"),void 0,o).append(),e=n.length;e--;)n[e]&&(t=this.renderSlice(e).append(),this.valueShapes[e]=t.id,this.shapes[t.id]=e);i.render()}}}),t.fn.sparkline.box=T=i(t.fn.sparkline._base,{type:"box",init:function(e,i,n,r,a){T._super.init.call(this,e,i,n,r,a),this.values=t.map(i,Number),this.width="auto"===n.get("width")?"4.0em":r,this.initTarget(),this.values.length||(this.disabled=1)},getRegion:function(){return 1},getCurrentRegionFields:function(){var t=[{field:"lq",value:this.quartiles[0]},{field:"med",value:this.quartiles[1]},{field:"uq",value:this.quartiles[2]}];return void 0!==this.loutlier&&t.push({field:"lo",value:this.loutlier}),void 0!==this.routlier&&t.push({field:"ro",value:this.routlier}),void 0!==this.lwhisker&&t.push({field:"lw",value:this.lwhisker}),void 0!==this.rwhisker&&t.push({field:"rw",value:this.rwhisker}),t},render:function(){var t,e,i,n,r,o,l,u,c,h,d,f=this.target,p=this.values,m=p.length,v=this.options,g=this.canvasWidth,_=this.canvasHeight,y=void 0===v.get("chartRangeMin")?s.min.apply(s,p):v.get("chartRangeMin"),b=void 0===v.get("chartRangeMax")?s.max.apply(s,p):v.get("chartRangeMax"),w=0;if(T._super.render.call(this)){if(v.get("raw"))v.get("showOutliers")&&p.length>5?(e=p[0],t=p[1],n=p[2],r=p[3],o=p[4],l=p[5],u=p[6]):(t=p[0],n=p[1],r=p[2],o=p[3],l=p[4]);else if(p.sort(function(t,e){return t-e}),n=a(p,1),r=a(p,2),o=a(p,3),i=o-n,v.get("showOutliers")){for(t=l=void 0,c=0;c<m;c++)void 0===t&&p[c]>n-i*v.get("outlierIQR")&&(t=p[c]),p[c]<o+i*v.get("outlierIQR")&&(l=p[c]);e=p[0],u=p[m-1]}else t=p[0],l=p[m-1];this.quartiles=[n,r,o],this.lwhisker=t,this.rwhisker=l,this.loutlier=e,this.routlier=u,d=g/(b-y+1),v.get("showOutliers")&&(w=s.ceil(v.get("spotRadius")),g-=2*s.ceil(v.get("spotRadius")),d=g/(b-y+1),e<t&&f.drawCircle((e-y)*d+w,_/2,v.get("spotRadius"),v.get("outlierLineColor"),v.get("outlierFillColor")).append(),u>l&&f.drawCircle((u-y)*d+w,_/2,v.get("spotRadius"),v.get("outlierLineColor"),v.get("outlierFillColor")).append()),f.drawRect(s.round((n-y)*d+w),s.round(.1*_),s.round((o-n)*d),s.round(.8*_),v.get("boxLineColor"),v.get("boxFillColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/2),s.round((n-y)*d+w),s.round(_/2),v.get("lineColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/4),s.round((t-y)*d+w),s.round(_-_/4),v.get("whiskerColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/2),s.round((o-y)*d+w),s.round(_/2),v.get("lineColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/4),s.round((l-y)*d+w),s.round(_-_/4),v.get("whiskerColor")).append(),f.drawLine(s.round((r-y)*d+w),s.round(.1*_),s.round((r-y)*d+w),s.round(.9*_),v.get("medianColor")).append(),v.get("target")&&(h=s.ceil(v.get("spotRadius")),f.drawLine(s.round((v.get("target")-y)*d+w),s.round(_/2-h),s.round((v.get("target")-y)*d+w),s.round(_/2+h),v.get("targetColor")).append(),f.drawLine(s.round((v.get("target")-y)*d+w-h),s.round(_/2),s.round((v.get("target")-y)*d+w+h),s.round(_/2),v.get("targetColor")).append()),f.render()}}}),E=i({init:function(t,e,i,n){this.target=t,this.id=e,this.type=i,this.args=n},append:function(){return this.target.appendShape(this),this}}),O=i({_pxregex:/(\d+)(px)?\s*$/i,init:function(e,i,n){e&&(this.width=e,this.height=i,this.target=n,this.lastShapeId=null,n[0]&&(n=n[0]),t.data(n,"_jqs_vcanvas",this))},drawLine:function(t,e,i,n,r,a){return this.drawShape([[t,e],[i,n]],r,a)},drawShape:function(t,e,i,n){return this._genShape("Shape",[t,e,i,n])},drawCircle:function(t,e,i,n,r,a){return this._genShape("Circle",[t,e,i,n,r,a])},drawPieSlice:function(t,e,i,n,r,a,o){return this._genShape("PieSlice",[t,e,i,n,r,a,o])},drawRect:function(t,e,i,n,r,a){return this._genShape("Rect",[t,e,i,n,r,a])},getElement:function(){return this.canvas},getLastShapeId:function(){return this.lastShapeId},reset:function(){alert("reset not implemented")},_insert:function(e,i){t(i).html(e)},_calculatePixelDims:function(e,i,n){var r;r=this._pxregex.exec(i),this.pixelHeight=r?r[1]:t(n).height(),r=this._pxregex.exec(e),this.pixelWidth=r?r[1]:t(n).width()},_genShape:function(t,e){var i=P++;return e.unshift(i),new 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Are you sure?":!1,Dataset:!1,Annotation:!1,"This history is empty. Click 'Get Data' on the left tool menu to start":!1,"You must be logged in to create histories":!1,"Unable to purge dataset":!1,"Cannot display datasets removed from disk":!1,"This dataset must finish uploading before it can be viewed":!1,"This dataset is not yet viewable":!1,"View data":!1,Download:!1,"Download dataset":!1,"Additional files":!1,"View details":!1,"This is a new dataset and not all of its data are available yet":!1,"You do not have permission to view this dataset":!1,"The job creating this dataset was cancelled before completion":!1,"This job is waiting to run":!1,"This dataset is currently uploading":!1,"Metadata is being auto-detected":!1,"This job is currently running":!1,'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':!1,"An error occurred with this dataset":!1,"No data":!1,"An error occurred setting the metadata for this dataset":!1,"There was an error getting the data for this dataset":!1,"This dataset has been deleted and removed from disk":!1,"This dataset has been deleted":!1,"This dataset has been hidden":!1,format:!1,database:!1,"Edit attributes":!1,"Cannot edit attributes of datasets removed from disk":!1,"Undelete dataset to edit attributes":!1,"This dataset must finish uploading before it can be edited":!1,"This dataset is not yet editable":!1,Delete:!1,"Dataset is already deleted":!1,"View or report this error":!1,"Run this job again":!1,Visualize:!1,"Visualize in":!1,"Undelete it":!1,"Permanently remove it from disk":!1,"Unhide it":!1,"You may be able to":!1,"set it manually or retry auto-detection":!1,"Edit dataset tags":!1,"Edit dataset annotation":!1,"Tool Help":!1,"Reset passwords":!1,"Search Tool Shed":!1,"Monitor 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the data source.":!1,"Next in History":!1,"Previous in History":!1,"Chat online":!1,"Multiple collections":!1,"Dataset collections":!1,"Dataset collection":!1,"Multiple datasets":!1,"Single dataset":!1,"Download from URL or upload files from disk":!1,"tool tooltip":!1},__ja:{"Analyze Data":"データ解析",Workflow:"ワークフロー","Shared Data":"共有データ","Data Libraries":"データライブラリ",Histories:"ヒストリー",Workflows:"ワークフロー",Visualizations:"可視化",Pages:"ページ",Visualization:"可視化","New Track Browser":"新しい Track Browser","Saved Visualizations":"保存された可視化","Interactive Environments":"インタラクティブ環境",Admin:"管理者",Help:"ヘルプ",Support:"サポート",Search:"検索","Mailing Lists":"メーリングリスト",Videos:"動画","How to Cite Galaxy":"Galaxy を引用する方法","Interactive Tours":"インタラクティブツアー",User:"ユーザー",Login:"ログイン",Register:"登録","Login or Register":"ログイン/登録",Preferences:"設定","Custom Builds":"カスタムビルド",Logout:"ログアウト","Saved Histories":"保存されたヒストリ","Saved Datasets":"保存されたデータセット","Saved Pages":"保存されたページ","Account and saved data":"アカウントと保存されたデータ","Account registration or login":"アカウントの登録またはログイン","Support, contact, and community":"サポート、コンタクト、コミュニティ","Administer this Galaxy":"この Galaxy の管理者","Visualize datasets":"データセットの可視化","Access published resources":"パブリッシュされたリソースへアクセス","Chain tools into workflows":"ツールとワークフローの連携","Analysis home view":"解析ホーム","History Lists":"ヒストリーリスト","Histories Shared with Me":"私と共有されているヒストリー","Current History":"現在のヒストリー","Create New":"新しく作成","Copy History":"ヒストリーをコピーする","Share or Publish":"共有またはパブリッシュ","Show Structure":"構造を見る","Extract Workflow":"ワークフローを抽出","Delete Permanently":"永久に削除","Dataset Actions":"データセットの操作","Copy Datasets":"データセットをコピー","Dataset Security":"データセットのセキュリティ","Resume Paused Jobs":"一時停止したジョブの再開","Collapse Expanded Datasets":"展開されたデータセットを畳む","Unhide Hidden Datasets":"隠されたデータセットを表示する","Delete Hidden Datasets":"隠されたデータセットを削除する","Purge Deleted Datasets":"削除されたデータセットを永久に削除",Downloads:"ダウンロード","Export Tool Citations":"ツールの引用をエクスポート","Export History to File":"ヒストリーをファイルへエクスポート","Other Actions":"その他のアクション","Import from File":"ファイルからの読み込み",Webhooks:"Webhooks","This history is empty":"ヒストリーは空です","No matching datasets found":"一致するデータセットが見つかりませんでした","Search datasets":"データセットを検索する","You are currently viewing a deleted history!":"消去したヒストリーをみています。","You are over your disk quota":"あなたはディスククォータを超えている",All:"一式",None:"なし","For all selected":"各項目を","Edit history tags":"ヒストリーのタグを編集","Edit history annotation":"ヒストリーのアノテーションを編集","Click to rename history":"ヒストリーの名前を変更するにはクリック","Operations on multiple datasets":"複数のデータセットに対する操作","Permanently delete datasets":"永久にデータセットを削除","This will permanently remove the data in your datasets. Are you sure?":"これは永久にあなたのデータセット内のデータを削除します。本当に？",Dataset:"データセット","This history is empty. Click 'Get Data' on the left tool menu to start":"ヒストリーは空です。解析をはじめるには、左パネルの 'データ取得' をクリック","You must be logged in to create histories":"ヒストリーを作成するためにはログインする必要があります","View data":"データを表示",Download:"ダウンロード","Download dataset":"データセットをダウンロード","View details":"細部を表示","This job is waiting to run":"ジョブは実行待ちです","This job is currently running":"ジョブは実行中です","An error occurred with this dataset":"このジョブの実行中に発生したエラー","No data":"データ無し","This dataset has been deleted and removed from disk":"このデータセットは、永続的にディスクから削除されました","This dataset has been deleted":"このデータセットは削除されました","This dataset has been hidden":"このデータセットは、非表示にされた",format:"フォーマット",database:"データベース","Edit attributes":"変数を編集する",Delete:"削除する","View or report this error":"このエラーを届け出る","Run this job again":"もう一度このジョブを実行する",Visualize:"可視化する","Undelete it":"復元する","Permanently remove it from disk":"永久にディスクから削除","Unhide it":"非表示解除する","Search Tool Shed":"Tool Shed で探す","Search Tool Shed (Beta)":"Tool Shed (Beta) で探す","Monitor installing repositories":"インストールレポジトリのモニタ","Manage installed tools":"インストールしたツールの管理","Reset metadata":"メタデータのリセット","Download local tool":"ローカルツールのダウンロード","Tool lineage":"ツール系統","Reload a tool's configuration":"ツールのコンフィグのリロード","Review tool migration stages":"ツール移行ステージのレビュー","View Tool Error Logs":"ツールのエラーログ","Manage Display Whitelist":"表示ホワイトリストの管理","Manage Tool Dependencies":"ツール依存関係の管理",Users:"ユーザー",Groups:"グループ","API keys":"API キー","Impersonate a user":"ユーザー偽装",Data:"データ",Quotas:"クォータ",Roles:"ロール","Local data":"ローカルデータ","Form definitions":"フォーム定義",Administration:"管理",Server:"サーバー","Tools and Tool Shed":"ツールと Tool Shed","User Management":"ユーザ管理","Form Definitions":"フォーム定義","Your workflows":"あなたのワークフロー"},__fr:{"Analyze Data":"Analyse de données",Workflow:"Workflow","Shared Data":"Données partagées","Data Libraries":"Bibliothèque de données",Histories:!1,Workflows:!1,Visualizations:"Visualisations",Pages:"Pages",Visualization:!1,"New Track Browser":"Nouveau Navigateur de Tracks/Pistes","Saved Visualizations":"Visualisations sauvegardées","Interactive Environments":"Environnements interactifs",Admin:"Admin",Help:"Aide",Support:"Assistance",Search:!1,"Mailing Lists":"Liste de diffusion",Videos:"Vidéos",Wiki:"Documentations","How to Cite Galaxy":"Comment citer Galaxy","Interactive Tours":"Guides interactifs",User:"Utilisateur",Login:"Authentification",Register:"Enregistrement","Login or Register":"Authentification et Enregistrement","Logged in as":"Authentifié en tant que",Preferences:"Préférences","Custom Builds":"Mes génomes Builds de référence",Logout:"Déconnexion","Saved Histories":"Historiques sauvegardés","Saved Datasets":"Jeux de données sauvegardés","Saved Pages":"Pages sauvegardées","Account and saved data":"Compte et données sauvegardées","Account registration or login":"Enregistrement ou authentification","Support, contact, and community":"Support,contact et communauté","Administer this Galaxy":"Outils Admin","Visualize datasets":"Visualiser les jeux de données","Access published resources":"Accéder aux données partagées","Chain tools into workflows":"Relier outils dans un workflow","Analysis home view":"Accueil analyse de données","History Lists":"Tableaux des historiques","Histories Shared with Me":"Historiques partagés avec moi","Current History":"Cet Historique","Create New":"Créer un nouveau","Copy History":"Copier l'Historique","Share or Publish":"Partager et publier","Show Structure":"Montrer la structure","Extract Workflow":"Extraire un Workflow","Delete Permanently":"Supprimer définitivement","Dataset Actions":"Actions sur les jeux de données","Copy Datasets":"Copier des jeux de données","Dataset Security":"Permissions/Sécurité","Resume Paused Jobs":"Reprendre les processus en pause","Collapse Expanded Datasets":"Réduire les données étendues","Unhide Hidden Datasets":"Afficher les données cachées","Delete Hidden Datasets":"Supprimer les données cachées","Purge Deleted Datasets":"Purger les données supprimées",Downloads:"Télécharger","Export Tool Citations":"Exporter les citations des outils","Export History to File":"Exporter l'Historique dans un fichier","Other Actions":"Autres actions","Import from File":"Importer depuis un fichier",Webhooks:"Webhooks","This history is empty":"Cet historique est vide","No matching datasets found":"Aucunes données correspondantes n'ont été trouvées","An error occurred while getting updates from the server":"Une erreur s'est produite lors de la réception des données depuis le serveur","Please contact a Galaxy administrator if the problem persists":"Veuillez contacter un administrateur de l'instance Galaxy si ce problème persiste","search datasets":"Rechercher des données","You are currently viewing a deleted history!":"Vous consultez actuellement un historique supprimé!","You are over your disk quota":"Vous avez dépassé votre quota d'espace disque","Tool execution is on hold until your disk usage drops below your allocated quota":"L'exécution de l'outil est en attente tant que votre utilisation d'espace disque dépasse le quota attribué",All:"Tout",None:"Aucun","For all selected":"Pour toute la sélection","Edit history tags":"Editer les mots-clés de l'historique","Edit history Annotation":"Editer l'annotation de l'historique","Click to rename history":"Cliquer pour renommer l'historique","Operations on multiple datasets":"Opérer sur plusieurs jeux de données en même temps","Hide datasets":"Cacher les jeux de données","Unhide datasets":"Afficher les jeux de données cachés","Delete datasets":"Supprimer les jeux de données","Undelete datasets":"Restaurer les jeux de données supprimés","Permanently delete datasets":"Supprimer définitivement les jeux de données","This will permanently remove the data in your datasets. Are you sure?":"Cela supprimera de manière permanente les données de votre historique. Êtes-vous certain?",Dataset:"Jeu de données",Annotation:"Annotation","This history is empty. Click 'Get Data' on the left tool menu to start":"Cet historique est vide. Cliquer sur 'Get Data' au niveau du menu d'outils à gauche pour démarrer","You must be logged in to create histories":"Vous devez être connecté pour créer un historique","load your own data":"Charger vos propres données","get data from an external source":"Charger des données depuis une source externe","Include Deleted Datasets":"Inclure les jeux de données supprimés","Include Hidden Datasets":"Inclure les jeux de données cachés","Unable to purge dataset":"Impossible de purger le jeu de données","Cannot display datasets removed from disk":"Impossible de visualiser les jeux de données supprimés du disque","This dataset must finish uploading before it can be viewed":"Le jeu de données doit être totalement téléversé avant de pouvoir être visualiser","This dataset is not yet viewable":"Ce jeu de données n'est pas visualisable","View data":"Voir les données",Download:!1,"Download dataset":"Télécharger le jeu de données","Additional files":"Fichiers additionnels","View details":"Voir les détails","This is a new dataset and not all of its data are available yet":"Il s'agit d'un nouveau jeu de données et seule une partie des données est accessible pour le moment","You do not have permission to view this dataset":"Vous n'avez pas la permission de voir ce jeu de données","The job creating this dataset was cancelled before completion":"Le processus à l'origine de ce jeu de données a été annulé prématurément","This job is waiting to run":"Ce calcul est en attente de traitement","This dataset is currently uploading":"Ce jeu de données est en cours de téléversement","Metadata is being auto-detected":"Les métadonnées sont auto-détectées","This job is currently running":"Le traitement est en cours",'This job is paused. Use the "Resume Paused Jobs" in the history menu to resume':'Ce traitement est en pause. Utilisez le "Relancer les traitements en pause" dans le menu d\'historique pour le relancer',"An error occurred with this dataset":"Une erreur est survenue avec ce jeu de données","No data":"Aucune donnée","An error occurred setting the metadata for this dataset":"Une erreur est survenue pendant la récupération des métadonnées de ce jeu de données","There was an error getting the data for this dataset":"Il est survenu une erreur durant la récupération du contenu de ce jeu de données","This dataset has been deleted and removed from disk":"Ce jeu de données a été supprimé et effacé du disque","This dataset has been deleted":"Ce jeu de données a été supprimé","This dataset has been hidden":"Ce jeu de données a été caché",format:"format",database:"génome de référence","Edit attributes":"Editer les attributs","Cannot edit attributes of datasets removed from disk":"Impossible d'éditer les attributs de jeux de données effacés du disque","Undelete dataset to edit attributes":"Restaurer le jeu de données pour en éditer les attributs","This dataset must finish uploading before it can be edited":"Ce jeu de données doit être entièrement téléversé avant toute modification","This dataset is not yet editable":"Ce jeu de données n'est pas encore éditable",Delete:"Supprimer","Dataset is already deleted":"Le jeu de données est déjà supprimé","View or report this error":"Voir ou remonter cette erreur","Run this job again":"Exécuter ce traitement à nouveau",Visualize:!1,"Visualize in":"Visualiser via","Undelete it":"Restaurer","Permanently remove it from disk":"Supprimer définitivement du disque","Unhide it":"Rendre visible","You may be able to":"Vous devriez être en mesure de","set it manually or retry auto-detection":"Traitez le manuellement ou retenter la détection automatique","Edit dataset tags":"Editer les mots-clés du jeu de données","Edit dataset annotation":"Editer les annotations du jeu de données","Tool Help":!1,"Reset passwords":!1,"Search Tool Shed":!1,"Monitor installing repositories":!1,"Manage installed tools":!1,"Reset metadata":!1,"Download local tool":!1,"Tool lineage":!1,"Reload a tool's configuration":!1,"Review tool migration stages":!1,"View Tool Error Logs":!1,"Manage Display Whitelist":!1,"Manage Tool Dependencies":!1,Users:!1,Groups:!1,"API keys":!1,"Impersonate a user":!1,Data:!1,Quotas:!1,Roles:!1,"Local data":!1,"Form Definitions":!1,"Enable/Disable Scratchbook":!1,"Show/Hide Scratchbook":!1,Tags:"Mots-clés","Edit annotation":"Editer les annotations",Subscript:!1,Superscript:!1,Trackster:!1,"Any additional comments you can provide regarding what you were doing at the time of the bug.":!1,"Your email address":!1,Report:!1,"Error Report":!1,"Dataset details":!1,"Save permissions.":!1,"Change the datatype to a new type.":!1,"Convert the datatype to a new format.":!1,"Save attributes of the dataset.":!1,"Change data type":!1,"Edit dataset attributes":!1,"Save permissions":!1,"Manage dataset permissions":!1,"Change datatype":!1,"Convert 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i="",n=0;0===e.items.length&&(i+='<tr><td colspan="100"><em>No Items</em></td></tr>',n=1);var r=!0,a=!1,o=void 0;try{for(var s,l=e.items[Symbol.iterator]();!(r=(s=l.next()).done);r=!0){var u=s.value;i+="<tr ",e.current_item_id==u.id&&(i+='class="current"'),i+=">",e.show_item_checkboxes&&(i+='<td style="width: 1.5em;"><input type="checkbox" name="id" value="'+u.encode_id+'" id="'+u.encode_id+'" class="grid-row-select-checkbox" /></td>');var c=!0,h=!1,d=void 0;try{for(var f,p=e.columns[Symbol.iterator]();!(c=(f=p.next()).done);c=!0){var m=f.value;if(m.visible){var v="";m.nowrap&&(v='style="white-space:nowrap;"');var g=u.column_config[m.label],_=g.link,y=g.value,b=g.target;"string"===t.type(y)&&(y=y.replace(/\/\//g,"/"));var w="",x="";m.attach_popup&&(w="grid-"+u.encode_id+"-popup",x="menubutton",""!==_&&(x+=" split"),x+=" popup"),i+="<td "+v+">",_?(0!==e.operations.length&&(i+='<div id="'+w+'" class="'+x+'" style="float: left;">'),i+='<a class="menubutton-label use-target" target="'+b+'" 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g=m.value;g.allow_multiple&&(e+='<input type="button" value="'+g.label+'" class="operation-button action-button">&nbsp;')}}catch(t){f=!0,p=t}finally{try{!d&&v.return&&v.return()}finally{if(f)throw p}}e+="</td></tr>"}var _=!1,y=!0,b=!1,w=void 0;try{for(var x,k=t.operations[Symbol.iterator]();!(y=(x=k.next()).done);y=!0){if(x.value.global_operation){_=!0;break}}}catch(t){b=!0,w=t}finally{try{!y&&k.return&&k.return()}finally{if(b)throw w}}if(_){e+='<tr><td colspan="100">';var C=!0,S=!1,T=void 0;try{for(var A,M=t.operations[Symbol.iterator]();!(C=(A=M.next()).done);C=!0){var E=A.value;E.global_operation&&(e+='<a class="action-button" href="'+E.global_operation+'">'+E.label+"</a>")}}catch(t){S=!0,T=t}finally{try{!C&&M.return&&M.return()}finally{if(S)throw T}}e+="</td></tr>"}return t.legend&&(e+='<tr><td colspan="100">'+t.legend+"</td></tr>"),e},message:function(t){var e=t.status;return-1!=["success","ok"].indexOf(e)&&(e="done"),'<p><div class="'+e+'message transient-message">'+n.escape(t.message)+'</div><div style="clear: both"></div></p>'},grid_filters:function(t){var e=t.default_filter_dict,i=t.filters,n="none";t.advanced_search&&(n="block");var r=!1,a=!0,o=!1,s=void 0;try{for(var l,u=t.columns[Symbol.iterator]();!(a=(l=u.next()).done);a=!0){var c=l.value;if("advanced"==c.filterable){var h=c.key,d=i[h],f=e[h];d&&f&&d!=f&&(n="block"),r=!0}}}catch(t){o=!0,s=t}finally{try{!a&&u.return&&u.return()}finally{if(o)throw s}}var p="block";"block"==n&&(p="none");var m='<div id="standard-search" style="display: '+p+';"><table><tr><td style="padding: 0;"><table>',v=!0,g=!1,_=void 0;try{for(var y,b=t.columns[Symbol.iterator]();!(v=(y=b.next()).done);v=!0){var w=y.value;"standard"==w.filterable&&(m+=this.grid_column_filter(t,w))}}catch(t){g=!0,_=t}finally{try{!v&&b.return&&b.return()}finally{if(g)throw _}}m+="</table></td></tr><tr><td>",r&&(m+='<a href="" class="advanced-search-toggle">Advanced Search</a>'),m+="</td></tr></table></div>",m+='<div id="advanced-search" style="display: '+n+'; margin-top: 5px; border: 1px solid #ccc;"><table><tr><td style="text-align: left" colspan="100"><a href="" class="advanced-search-toggle">Close Advanced Search</a></td></tr>';var x=!0,k=!1,C=void 0;try{for(var S,T=t.columns[Symbol.iterator]();!(x=(S=T.next()).done);x=!0){var A=S.value;"advanced"==A.filterable&&(m+=this.grid_column_filter(t,A))}}catch(t){k=!0,C=t}finally{try{!x&&T.return&&T.return()}finally{if(k)throw C}}return m+="</table></div>"},grid_column_filter:function(e,i){var n=e.filters,r=i.label,a=i.key;"advanced"==i.filterable&&(r=r.toLowerCase());var o="<tr>";if("advanced"==i.filterable&&(o+='<td align="left" style="padding-left: 10px">'+r+":</td>"),o+='<td style="padding-bottom: 1px;">',i.is_text){o+='<form class="text-filter-form" column_key="'+a+'" action="'+e.url+'" method="get" >';var s=!0,l=!1,u=void 0;try{for(var c,h=e.columns[Symbol.iterator]();!(s=(c=h.next()).done);s=!0){var d=c.value,f=n[d.key];f&&"All"!=f&&(d.is_text&&(f=JSON.stringify(f)),o+='<input type="hidden" id="'+d.key+'" name="f-'+d.key+'" value="'+f+'"/>')}}catch(t){l=!0,u=t}finally{try{!s&&h.return&&h.return()}finally{if(l)throw u}}o+='<span id="'+a+'-filtering-criteria">';var p=n[a];if(p){var m=t.type(p);if("string"==m&&"All"!=p&&(o+=this.filter_element(a,p)),"array"==m)for(var v in p){var g=p;g=g.slice(v),o+=this.filter_element(a,p[v])}}o+="</span>";var _="",y=20;"standard"==i.filterable&&(_=i.label.toLowerCase(),_.length<20&&(y=_.length),y+=4),o+='\n                <span class="search-box">\n                    <input class="search-box-input" id="input-'+a+'-filter" name="f-'+a+'" type="text" placeholder="'+_+'" size="'+y+'"/>\n                    <button type="submit" style="background: transparent; border: none; padding: 4px; margin: 0px;">\n                        <i class="fa fa-search"></i>\n                    </button>\n                </span>\n            </form>'}else{o+='<span id="'+a+'-filtering-criteria">';var b=!1;for(var w in e.categorical_filters[a]){var x=e.categorical_filters[a][w],k="",C="";for(var S in x)k=S,C=x[S];b&&(o+=" | "),b=!0;var T=n[a];T&&x[a]&&T==C?o+='<span class="categorical-filter '+a+'-filter current-filter">'+w+"</span>":o+='<span class="categorical-filter '+a+'-filter"><a href="javascript:void(0);" filter_key="'+k+'" filter_val="'+C+'">'+w+"</a></span>"}o+="</span>"}return o+="</td></tr>"},filter_element:function(t,e){return'<span class="text-filter-val">'+(e=a.default.sanitize(e))+'<a href="javascript:void(0);" filter_key="'+t+'" filter_val="'+e+'"><i class="fa fa-times" style="padding-left: 5px; padding-bottom: 6px;"/></a></span>'}}}).call(e,i(0),i(1))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(4),a=function(t){return t&&t.__esModule?t:{default:t}}(r),o=t.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new 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Track")}},{name:"remove_icon",title:(0,l.default)("Remove"),css_class:"remove-icon",on_click_fn:function(e){t(".tooltip").remove(),e.remove()}}],$(I.prototype,{config_params:[{key:"name",label:"Name",type:"text",default_value:""},{key:"content_visible",type:"bool",default_value:!0,hidden:!0}],config_onchange:function(){},init:function(){},changed:function(){this.view.changed()},can_draw:function(){return!(!this.enabled||!this.config.get_value("content_visible"))},request_draw:function(){},_draw:function(t){},to_dict:function(){},set_name:function(t){this.old_name=this.config.get_value("name"),this.config.set_value("name",t)},revert_name:function(){this.old_name&&this.config.set_value("name",this.old_name)},remove:function(){this.changed(),this.container.remove_drawable(this);var e=this.view;this.container_div.hide(0,function(){t(this).remove(),e.update_intro_div()})},build_container_div:function(){},update_icons:function(){},hide_contents:function(){},show_contents:function(){},get_drawables:function(){}});var L=function(t,e,i){I.call(this,t,e,i),this.obj_type=i.obj_type,this.drawables=[]};$(L.prototype,I.prototype,{unpack_drawables:function(t){this.drawables=[];for(var e,i=0;i<t.length;i++)e=at(t[i],this.view,this),this.add_drawable(e)},init:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].init()},_draw:function(t){for(var e=0;e<this.drawables.length;e++)this.drawables[e]._draw(t)},to_dict:function(){for(var t=[],e=0;e<this.drawables.length;e++)t.push(this.drawables[e].to_dict());return{prefs:this.config.to_key_value_dict(),obj_type:this.obj_type,drawables:t}},add_drawable:function(t){this.drawables.push(t),t.container=this,this.changed()},add_drawable_before:function(t,e){this.changed();var i=this.drawables.indexOf(e);return-1!==i&&(this.drawables.splice(i,0,t),!0)},replace_drawable:function(t,e,i){var n=this.drawables.indexOf(t);return-1!==n&&(this.drawables[n]=e,i&&t.container_div.replaceWith(e.container_div),this.changed()),n},remove_drawable:function(t){var e=this.drawables.indexOf(t);return-1!==e&&(this.drawables.splice(e,1),t.container=null,this.changed(),!0)},move_drawable:function(t,e){var i=this.drawables.indexOf(t);return-1!==i&&(this.drawables.splice(i,1),this.drawables.splice(e,0,t),this.changed(),!0)},get_drawables:function(){return this.drawables},get_tracks:function(t){for(var e,i=this.drawables.slice(0),n=[];0!==i.length;)e=i.shift(),e instanceof t?n.push(e):e.drawables&&(i=i.concat(e.drawables));return n}});var H=function(e,i,n){if($(n,{obj_type:"DrawableGroup",drag_handle_class:"group-handle"}),L.call(this,e,i,n),this.content_div=t("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div),j(this.container_div,this),j(this.content_div,this),R(this.container_div,this.drag_handle_class,".group",this),this.filters_manager=new x.default.FiltersManager(this),this.header_div.after(this.filters_manager.parent_div),this.filters_manager.parent_div.after(t("<div style='clear: both'/>")),this.saved_filters_managers=[],"drawables"in n&&this.unpack_drawables(n.drawables),"filters"in n){var r=this.filters_manager;this.filters_manager=new x.default.FiltersManager(this,n.filters),r.parent_div.replaceWith(this.filters_manager.parent_div),n.filters.visible&&this.setup_multitrack_filtering()}};$(H.prototype,I.prototype,L.prototype,{action_icons_def:[I.prototype.action_icons_def[0],I.prototype.action_icons_def[1],{name:"composite_icon",title:(0,l.default)("Show composite track"),css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_composite_track()}},{name:"filters_icon",title:(0,l.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?(t.filters_manager.clear_filters(),t._restore_filter_managers()):(t.setup_multitrack_filtering(),t.request_draw({clear_tile_cache:!0})),t.filters_manager.toggle()}},I.prototype.action_icons_def[2]],build_container_div:function(){var e=t("<div/>").addClass("group").attr("id","group_"+this.id);return this.container&&this.container.content_div.append(e),e},hide_contents:function(){this.tiles_div.hide()},show_contents:function(){this.tiles_div.show(),this.request_draw()},update_icons:function(){var e=this.drawables.length;if(0===e)this.action_icons.composite_icon.hide(),this.action_icons.filters_icon.hide();else if(1===e)this.action_icons.composite_icon.toggle(this.drawables[0]instanceof K),this.action_icons.filters_icon.hide();else{var i,n,r,a=this.drawables[0].get_type(),o=0;for(i=0;i<e;i++){if(r=this.drawables[i],r.get_type()!==a){can_composite=!1;break}r instanceof et&&o++}if(this.drawables[0]instanceof Z?this.action_icons.composite_icon.show():(this.action_icons.composite_icon.hide(),t(".tooltip").remove()),o>1&&o===this.drawables.length){var s,l={};for(r=this.drawables[0],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],l[s.name]=[s];for(i=1;i<this.drawables.length;i++)for(r=this.drawables[i],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],s.name in l&&l[s.name].push(s);this.filters_manager.remove_all();var u,c;for(var h in l)u=l[h],u.length===o&&(c=new x.default.NumberFilter({name:u[0].name,index:u[0].index}),this.filters_manager.add_filter(c));this.action_icons.filters_icon.toggle(this.filters_manager.filters.length>0)}else this.action_icons.filters_icon.hide()}},_restore_filter_managers:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].filters_manager=this.saved_filters_managers[t];this.saved_filters_managers=[]},setup_multitrack_filtering:function(){if(this.filters_manager.filters.length>0){this.saved_filters_managers=[];for(var t=0;t<this.drawables.length;t++){var e=this.drawables[t];this.saved_filters_managers.push(e.filters_manager),e.filters_manager=this.filters_manager}}this.filters_manager.init_filters()},show_composite_track:function(){var t=new K(this.view,this.view,{name:this.config.get_value("name"),drawables:this.drawables});this.container.replace_drawable(this,t,!0);t.request_draw()},add_drawable:function(t){L.prototype.add_drawable.call(this,t),this.update_icons()},remove_drawable:function(t){L.prototype.remove_drawable.call(this,t),this.update_icons()},to_dict:function(){this.filters_manager.visible()&&this._restore_filter_managers();var t=$(L.prototype.to_dict.call(this),{filters:this.filters_manager.to_dict()});return this.filters_manager.visible()&&this.setup_multitrack_filtering(),t},request_draw:function(t){c.each(this.drawables,function(e){e.request_draw(t)})}});var z=n.View.extend({initialize:function(t){$(t,{obj_type:"View"}),L.call(this,"View",t.container,t),this.chrom=null,this.vis_id=t.vis_id,this.dbkey=t.dbkey,this.stand_alone=void 0===t.stand_alone||t.stand_alone,this.label_tracks=[],this.tracks_to_be_redrawn=[],this.max_low=0,this.max_high=0,this.zoom_factor=3,this.min_separation=30,this.has_changes=!1,this.load_chroms_deferred=null,this.render(),this.canvas_manager=new d.default.CanvasManager(this.container.get(0).ownerDocument),this.reset(),this.config=M.default.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"}],{name:t.name})},render:function(){this.requested_redraw=!1;var e=this.container,i=this;this.top_container=t("<div/>").addClass("top-container").appendTo(e),this.browser_content_div=t("<div/>").addClass("content").appendTo(e),this.bottom_container=t("<div/>").addClass("bottom-container").appendTo(e),this.top_labeltrack=t("<div/>").addClass("top-labeltrack").appendTo(this.top_container),this.viewport_container=t("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div),this.content_div=this.viewport_container,j(this.viewport_container,i),this.intro_div=t("<div/>").addClass("intro").appendTo(this.viewport_container);t("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){d.default.select_datasets({dbkey:i.dbkey},function(t){c.each(t,function(t){i.add_drawable(at(t,i,i))})})});this.nav_container=t("<div/>").addClass("trackster-nav-container").prependTo(this.top_container),this.nav=t("<div/>").addClass("trackster-nav").appendTo(this.nav_container),this.stand_alone&&(this.nav_container.addClass("stand-alone"),this.nav.addClass("stand-alone")),this.overview=t("<div/>").addClass("overview").appendTo(this.bottom_container),this.overview_viewport=t("<div/>").addClass("overview-viewport").appendTo(this.overview),this.overview_close=t("<a/>").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport),this.overview_highlight=t("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport),this.overview_box_background=t("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport),this.overview_box=t("<div/>").addClass("overview-box").appendTo(this.overview_viewport),this.default_overview_height=this.overview_box.height(),this.nav_controls=t("<div/>").addClass("nav-controls").appendTo(this.nav),this.chrom_select=t("<select/>").attr({name:"chrom"}).addClass("chrom-nav").append("<option value=''>Loading</option>").appendTo(this.nav_controls);var n=function(e){"focusout"!==e.type&&13!==(e.keyCode||e.which)&&27!==(e.keyCode||e.which)||(27!==(e.keyCode||e.which)&&i.go_to(t(this).val()),t(this).hide(),t(this).val(""),i.location_span.show(),i.chrom_select.show()),e.stopPropagation()};this.nav_input=t("<input/>").addClass("nav-input").hide().bind("keyup focusout",n).appendTo(this.nav_controls),this.location_span=t("<span/>").addClass("location").attr("title","Click to change location").tooltip({placement:"bottom"}).appendTo(this.nav_controls),this.location_span.click(function(){i.location_span.hide(),i.chrom_select.hide(),i.nav_input.val(i.chrom+":"+i.low+"-"+i.high),i.nav_input.css("display","inline-block"),i.nav_input.select(),i.nav_input.focus(),i.nav_input.autocomplete({source:function(e,n){var r=[],a=t.map(i.get_tracks(et),function(t){return t.data_manager.search_features(e.term).success(function(t){r=r.concat(t)})});t.when.apply(t,a).done(function(){n(t.map(r,function(t){return{label:t[0],value:t[1]}}))})},minLength:2})}),void 0!==this.vis_id&&(this.hidden_input=t("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)),this.zo_link=t("<a/>").attr("id","zoom-out").attr("title","Zoom out").tooltip({placement:"bottom"}).click(function(){i.zoom_out()}).appendTo(this.nav_controls),this.zi_link=t("<a/>").attr("id","zoom-in").attr("title","Zoom in").tooltip({placement:"bottom"}).click(function(){i.zoom_in()}).appendTo(this.nav_controls),this.load_chroms_deferred=this.load_chroms({low:0}),this.chrom_select.bind("change",function(){i.change_chrom(i.chrom_select.val())}),this.browser_content_div.click(function(e){t(this).find("input").trigger("blur")}),this.browser_content_div.bind("dblclick",function(t){i.zoom_in(t.pageX,this.viewport_container)}),this.overview_box.bind("dragstart",function(t,e){this.current_x=e.offsetX}).bind("drag",function(t,e){var n=e.offsetX-this.current_x;this.current_x=e.offsetX;var r=Math.round(n/i.viewport_container.width()*(i.max_high-i.max_low));i.move_delta(-r)}),this.overview_close.click(function(){i.reset_overview()}),this.viewport_container.bind("draginit",function(t,e){if(t.clientX>i.viewport_container.width()-16)return!1}).bind("dragstart",function(t,e){e.original_low=i.low,e.current_height=t.clientY,e.current_x=e.offsetX}).bind("drag",function(e,n){var r=t(this),a=n.offsetX-n.current_x,o=r.scrollTop()-(e.clientY-n.current_height);r.scrollTop(o),n.current_height=e.clientY,n.current_x=n.offsetX;var s=Math.round(a/i.viewport_container.width()*(i.high-i.low));i.move_delta(s)}),this.top_labeltrack.bind("dragstart",function(e,n){return t("<div/>").addClass("zoom-area").css("height",i.browser_content_div.height()+i.top_labeltrack.height()+1).appendTo(t(this))}).bind("drag",function(e,n){t(n.proxy).css({left:Math.min(e.pageX,n.startX)-i.container.offset().left,width:Math.abs(e.pageX-n.startX)});var r=Math.min(e.pageX,n.startX)-i.container.offset().left,a=Math.max(e.pageX,n.startX)-i.container.offset().left,o=i.high-i.low,s=i.viewport_container.width();i.update_location(Math.round(r/s*o)+i.low,Math.round(a/s*o)+i.low)}).bind("dragend",function(e,n){var r=Math.min(e.pageX,n.startX),a=Math.max(e.pageX,n.startX),o=i.high-i.low,s=i.viewport_container.width(),l=i.low;i.low=Math.round(r/s*o)+l,i.high=Math.round(a/s*o)+l,t(n.proxy).remove(),i.request_redraw()}),this.add_label_track(new J(this,{content_div:this.top_labeltrack})),t(window).bind("resize",function(){this.resize_timer&&clearTimeout(this.resize_timer),this.resize_timer=setTimeout(function(){i.resize_window()},500)}),t(document).bind("redraw",function(){i.redraw()}),this.reset(),t(window).trigger("resize")},get_base_color:function(t){return this.config.get_value(t.toLowerCase()+"_color")||this.config.get_value("n_color")}});$(z.prototype,L.prototype,{changed:function(){this.has_changes=!0},update_intro_div:function(){this.intro_div.toggle(0===this.drawables.length)},trigger_navigate:function(t,e,i,n){if(this.timer&&clearTimeout(this.timer),n){var r=this;this.timer=setTimeout(function(){r.trigger("navigate",t+":"+e+"-"+i)},500)}else view.trigger("navigate",t+":"+e+"-"+i)},update_location:function(t,e){this.location_span.text(v.default.commatize(t)+" - "+v.default.commatize(e)),this.nav_input.val(this.chrom+":"+v.default.commatize(t)+"-"+v.default.commatize(e));var i=this.chrom_select.val();""!==i&&this.trigger_navigate(i,this.low,this.high,!0)},load_chroms:function(e){e.num=100;var i=this,n=t.Deferred();return t.ajax({url:Galaxy.root+"api/genomes/"+this.dbkey,data:e,dataType:"json",success:function(e){if(0!==e.chrom_info.length){if(e.reference){var r=new Q(i);i.add_label_track(r),i.reference_track=r}i.chrom_data=e.chrom_info,i.chrom_select.html(""),i.chrom_select.append(t('<option value="">Select Chrom/Contig</option>'));for(var a=0,o=i.chrom_data.length;a<o;a++){var s=i.chrom_data[a].chrom,l=t("<option>");l.text(s),l.val(s),i.chrom_select.append(l)}e.prev_chroms&&i.chrom_select.append(t('<option value="previous">Previous 100</option>')),e.next_chroms&&i.chrom_select.append(t('<option value="next">Next 100</option>')),i.chrom_start_index=e.start_index,n.resolve(e.chrom_info)}},error:function(){alert("Could not load chroms for this dbkey: "+i.dbkey)}}),n},change_chrom:function(e,i,n){var r=this;if(!r.chrom_data)return void r.load_chroms_deferred.then(function(){r.change_chrom(e,i,n)});if(e&&"None"!==e){if("previous"===e)return void r.load_chroms({low:this.chrom_start_index-100});if("next"===e)return void r.load_chroms({low:this.chrom_start_index+100});var a=t.grep(r.chrom_data,function(t,i){return t.chrom===e})[0];if(void 0===a)return void r.load_chroms({chrom:e},function(){r.change_chrom(e,i,n)});if(e!==r.chrom){r.chrom=e,r.chrom_select.val(r.chrom),r.max_high=a.len-1,r.reset();for(var o=0,s=r.drawables.length;o<s;o++){var l=r.drawables[o];l.init&&l.init()}r.reference_track&&r.reference_track.init()}void 0===i&&void 0===n?(r.low=0,r.high=r.max_high):(r.low=void 0!==i?Math.max(i,0):0,void 0===n?(r.low=Math.max(r.low-15,0),r.high=r.low+30):r.high=Math.min(n,r.max_high)),r.request_redraw()}},go_to:function(t){t=t.replace(/,/g,""),t=t.replace(/:|\-/g," ");var e=t.split(/\s+/),i=e[0],n=e[1]?parseInt(e[1],10):void 0,r=e[2]?parseInt(e[2],10):void 0;this.change_chrom(i,n,r)},move_fraction:function(t){var e=this,i=e.high-e.low;this.move_delta(t*i)},move_delta:function(t){var e=this,i=e.high-e.low;e.low-t<e.max_low?(e.low=e.max_low,e.high=e.max_low+i):e.high-t>e.max_high?(e.high=e.max_high,e.low=e.max_high-i):(e.high-=t,e.low-=t),e.request_redraw({data_fetch:!1}),this.redraw_on_move_fn&&clearTimeout(this.redraw_on_move_fn),this.redraw_on_move_fn=setTimeout(function(){e.request_redraw()},200);var n=e.chrom_select.val();this.trigger_navigate(n,e.low,e.high,!0)},add_drawable:function(t){L.prototype.add_drawable.call(this,t),t.init(),this.changed(),this.update_intro_div();var e=this;t.config.on("change",function(){e.changed()})},add_label_track:function(t){t.view=this,t.init(),this.label_tracks.push(t)},remove_drawable:function(e,i){if(L.prototype.remove_drawable.call(this,e),i){var n=this;e.container_div.hide(0,function(){t(this).remove(),n.update_intro_div()})}},reset:function(){this.low=this.max_low,this.high=this.max_high,this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(t,e){var i=this,n=e?[e]:i.drawables;c.each(n,function(e){var n=c.find(i.tracks_to_be_redrawn,function(t){return t[0]===e});n?n[1]=t:i.tracks_to_be_redrawn.push([e,t])}),this.requested_redraw||(requestAnimationFrame(function(){i._redraw()}),this.requested_redraw=!0)},_redraw:function(){this.requested_redraw=!1;var t=this.low,e=this.high;t<this.max_low&&(t=this.max_low),e>this.max_high&&(e=this.max_high);var i=this.high-this.low;0!==this.high&&i<this.min_separation&&(e=t+this.min_separation),this.low=Math.floor(t),this.high=Math.ceil(e),this.update_location(this.low,this.high),this.resolution_px_b=this.viewport_container.width()/(this.high-this.low);var n=this.low/(this.max_high-this.max_low)*this.overview_viewport.width()||0,r=(this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width()||0;this.overview_box.css({left:n,width:Math.max(13,r)}).show(),r<13&&this.overview_box.css("left",n-(13-r)/2),this.overview_highlight&&this.overview_highlight.css({left:n,width:r}),c.each(this.tracks_to_be_redrawn,function(t){var e=t[0],i=t[1];e&&e._draw(i)}),this.tracks_to_be_redrawn=[],c.each(this.label_tracks,function(t){t._draw()})},zoom_in:function(t,e){if(!(0===this.max_high||this.high-this.low<=this.min_separation)){var i=this.high-this.low,n=i/2+this.low,r=i/this.zoom_factor/2;t&&(n=t/this.viewport_container.width()*(this.high-this.low)+this.low),this.low=Math.round(n-r),this.high=Math.round(n+r),this.changed(),this.request_redraw()}},zoom_out:function(){if(0!==this.max_high){var t=this.high-this.low,e=t/2+this.low,i=t*this.zoom_factor/2;this.low=Math.round(e-i),this.high=Math.round(e+i),this.changed(),this.request_redraw()}},resize_viewport:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height())},resize_window:function(){this.resize_viewport(),this.request_redraw()},set_overview:function(t){if(this.overview_drawable){if(this.overview_drawable.dataset.id===t.dataset.id)return;this.overview_viewport.find(".track").remove()}var e=t.copy({content_div:this.overview_viewport}),i=this;e.header_div.hide(),e.is_overview=!0,i.overview_drawable=e,this.overview_drawable.postdraw_actions=function(){i.overview_highlight.show().height(i.overview_drawable.content_div.height()),i.overview_viewport.height(i.overview_drawable.content_div.height()+i.overview_box.outerHeight()),i.overview_close.show(),i.resize_window()},i.overview_drawable.request_draw(),this.changed()},reset_overview:function(){t(".tooltip").remove(),this.overview_viewport.find(".track-tile").remove(),this.overview_viewport.height(this.default_overview_height),this.overview_box.height(this.default_overview_height),this.overview_close.hide(),this.overview_highlight.hide(),view.resize_window(),view.overview_drawable=null}});var q=T.default.Tool.extend({defaults:{track:null},initialize:function(t){T.default.Tool.prototype.initialize.call(this,t);var e=!0;void 0!==t.tool_state&&void 0!==t.tool_state.hidden&&(e=t.tool_state.hidden),this.set("hidden",e),this.remove_inputs(["data","hidden_data","conditional"])},state_dict:function(t){return c.extend(this.get_inputs_dict(),{hidden:!this.is_visible()})}}),F=n.View.extend({events:{"change :input":"update_value"},render:function(){var e=this.$el.addClass("param-row"),i=this.model;t("<div>").addClass("param-label").text(i.get("label")).appendTo(e);t("<div/>").addClass("param-input").html(i.get("html")).appendTo(e).find(":input").val(i.get("value")),t("<div style='clear: both;'/>").appendTo(e)},update_value:function(e){this.model.set_value(t(e.target).val())}}),B=n.View.extend({initialize:function(t){this.model.on("change:hidden",this.set_visible,this)},render:function(){var e=this,i=this.model,n=this.$el.addClass("dynamic-tool").hide();n.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).keydown(function(t){t.stopPropagation()});t("<div class='tool-name'>").appendTo(n).text(i.get("name"));i.get("inputs").each(function(t){var e=new F({model:t});e.render(),n.append(e.$el)}),n.find("input").click(function(){t(this).select()});var r=t("<div>").addClass("param-row").appendTo(n),a=t("<input type='submit'>").attr("value","Run on complete dataset").appendTo(r);t("<input type='submit'>").attr("value","Run on visible region").appendTo(r).click(function(){e.run_on_region()}),a.click(function(){e.run_on_dataset()}),i.is_visible()&&this.$el.show()},set_visible:function(){this.$el.toggle(this.model.is_visible())},update_params:function(){for(var t=0;t<this.params.length;t++)this.params[t].update_value()},run_on_dataset:function(){var t=this.model;this.run({target_dataset_id:this.model.get("track").dataset.id,action:"rerun",tool_id:t.id},null,function(e){Galaxy.modal.show({title:t.get("name")+" is Running",body:t.get("name")+" is running on the complete dataset. Tool outputs are in dataset's history.",buttons:{Close:function(){Galaxy.modal.hide()}}})})},run_on_region:function(){var t,e=this.model.get("track"),i=this.model,n=new d.default.GenomeRegion({chrom:e.view.chrom,start:e.view.low,end:e.view.high}),r={target_dataset_id:e.dataset.id,action:"rerun",tool_id:i.id,regions:[n.toJSON()]},a=e,o=i.get("name")+a.tool_region_and_parameters_str(n);if(a.container===view){var s=new H(view,view,{name:e.config.get_value("name")}),l=a.container.replace_drawable(a,s,!1);s.container_div.insertBefore(a.view.content_div.children()[l]),s.add_drawable(a),a.container_div.appendTo(s.content_div),t=s}else t=a.container;var u=new a.constructor(view,t,{name:o,hda_ldda:"hda"});u.init_for_tool_data(),u.change_mode(a.mode),u.set_filters_manager(a.filters_manager.copy(u)),u.update_icons(),t.add_drawable(u),u.tiles_div.text("Starting job."),this.run(r,u,function(t){u.set_dataset(new C.default.Dataset(t)),u.tiles_div.text("Running job."),u.init()})},run:function(e,i,n){e.inputs=this.model.get_inputs_dict();var r=new v.default.ServerStateDeferred({ajax_settings:{url:Galaxy.root+"api/tools",data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});t.when(r.go()).then(function(t){"no converter"===t?(i.container_div.addClass("error"),i.content_div.text(P)):t.error?(i.container_div.addClass("error"),i.content_div.text("Tool cannot be rerun: "+t.message)):n(t)})}}),V=function(t,e){b.default.Scaler.call(this,e),this.filter=t};V.prototype.gen_val=function(t){return this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high?this.default_val:(parseFloat(t[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low)};var U=function(e,i,n,r,a){this.track=e,this.region=i,this.low=i.get("start"),this.high=i.get("end"),this.w_scale=n,this.canvas=r,this.html_elt=t("<div class='track-tile'/>").append(r),this.data=a,this.stale=!1};U.prototype.predisplay_actions=function(){};var W=function(t,e,i,n,r){U.call(this,t,e,i,n,r)};W.prototype.predisplay_actions=function(){};var G=function(t,e,i,n,r,a,o,s,l,u,c){U.call(this,t,e,i,n,r),this.mode=a,this.all_slotted=s,this.feature_mapper=l,this.has_icons=!1,this.incomplete_features=u,this.other_tiles_features_drawn={},this.seq_data=c};$(G.prototype,U.prototype),G.prototype.predisplay_actions=function(){};var X=function(e,i,r){$(r,{drag_handle_class:"draghandle"}),I.call(this,e,i,r),this.dataset=null,r.dataset&&(this.dataset=r.dataset instanceof n.Model?r.dataset:new C.default.Dataset(r.dataset)),this.dataset_check_type="converted_datasets_state",this.data_url_extra_params={},this.data_query_wait="data_query_wait"in r?r.data_query_wait:5e3,this.data_manager="data_manager"in r?r.data_manager:new d.default.GenomeDataManager({dataset:this.dataset,genome:new d.default.Genome({key:e.dbkey,chroms_info:{chrom_info:e.chrom_data}}),data_mode_compatible:this.data_and_mode_compatible,can_subset:this.can_subset}),this.min_height_px=16,this.max_height_px=800,this.visible_height_px=this.config.get_value("height"),this.content_div=t("<div class='track-content'>").appendTo(this.container_div),this.container&&(this.container.content_div.append(this.container_div),"resize"in r&&!r.resize||this.add_resize_handle())};$(X.prototype,I.prototype,{action_icons_def:[{name:"mode_icon",title:(0,l.default)("Set display mode"),css_class:"chevron-expand",on_click_fn:function(){}},I.prototype.action_icons_def[0],{name:"overview_icon",title:(0,l.default)("Set as overview"),css_class:"application-dock-270",on_click_fn:function(t){t.view.set_overview(t)}},I.prototype.action_icons_def[1],{name:"filters_icon",title:(0,l.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?t.filters_manager.clear_filters():t.filters_manager.init_filters(),t.filters_manager.toggle()}},{name:"tools_icon",title:(0,l.default)("Tool"),css_class:"hammer",on_click_fn:function(e){e.tool.toggle(),e.tool.is_visible()?e.set_name(e.config.get_value("name")+e.tool_region_and_parameters_str()):e.revert_name(),t(".tooltip").remove()}},{name:"param_space_viz_icon",title:(0,l.default)("Tool parameter space visualization"),css_class:"arrow-split",on_click_fn:function(e){var i="<strong>Tool</strong>:"+e.tool.get("name")+"<br/><strong>Dataset</strong>:"+e.config.get_value("name")+'<br/><strong>Region(s)</strong>: <select name="regions"><option value="cur">current viewing area</option><option value="bookmarks">bookmarks</option><option value="both">current viewing area and bookmarks</option></select>',r=function(){Galaxy.modal.hide(),t(window).unbind("keypress.check_enter_esc")},a=function(){var i,r=t('select[name="regions"] option:selected').val(),a=new d.default.GenomeRegion({chrom:view.chrom,start:view.low,end:view.high}),o=c.map(t(".bookmark"),function(e){return new d.default.GenomeRegion({from_str:t(e).children(".position").text()})});i="cur"===r?[a]:"bookmarks"===r?o:[a].concat(o),Galaxy.modal.hide(),window.location.href=Galaxy.root+"visualization/sweepster?"+t.param({dataset_id:e.dataset.id,hda_ldda:e.dataset.get("hda_ldda"),regions:JSON.stringify(new n.Collection(i).toJSON())})};Galaxy.modal.show({title:"Visualize tool parameter space and output from different parameter settings?",body:i,buttons:{No:r,Yes:a}})}},I.prototype.action_icons_def[2]],can_draw:function(){return this.dataset&&I.prototype.can_draw.call(this)},build_container_div:function(){return t("<div/>").addClass("track").attr("id","track_"+this.id)},set_dataset:function(t){this.dataset=t,this.data_manager.set("dataset",t)},on_resize:function(){this.request_draw({clear_tile_cache:!0})},add_resize_handle:function(){var e=this,i=!1,n=!1,r=t("<div class='track-resize'>");t(e.container_div).hover(function(){e.config.get_value("content_visible")&&(i=!0,r.show())},function(){i=!1,n||r.hide()}),r.hide().bind("dragstart",function(i,r){n=!0,r.original_height=t(e.content_div).height()}).bind("drag",function(i,n){var r=Math.min(Math.max(n.original_height+n.deltaY,e.min_height_px),e.max_height_px);t(e.tiles_div).css("height",r),e.visible_height_px=e.max_height_px===r?0:r,e.on_resize()}).bind("dragend",function(t,a){e.tile_cache.clear(),n=!1,i||r.hide(),e.config.set_value("height",e.visible_height_px),e.changed()}).appendTo(e.container_div)},hide_contents:function(){this.tiles_div.hide(),this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.tiles_div.show(),this.container_div.find(".yaxislabel, .track-resize").show(),this.request_draw()},get_type:function(){return this instanceof J?"LabelTrack":this instanceof Q?"ReferenceTrack":this instanceof Z?"LineTrack":this instanceof nt?"ReadTrack":this instanceof it?"VariantTrack":this instanceof K?"CompositeTrack":this instanceof et?"FeatureTrack":""},show_message:function(e){return this.tiles_div.remove(),t("<span/>").addClass("message").html(e).appendTo(this.content_div)},init:function(e){var i=this;if(i.enabled=!1,i.tile_cache.clear(),i.data_manager.clear(),i.content_div.children().remove(),i.container_div.removeClass("nodata error pending"),i.tiles_div=t("<div/>").addClass("tiles").appendTo(i.content_div),i.dataset.id){var n=t.Deferred(),r={hda_ldda:i.dataset.get("hda_ldda"),data_type:this.dataset_check_type,chrom:i.view.chrom,retry:e};return t.getJSON(this.dataset.url(),r,function(e){if(e&&"error"!==e&&"error"!==e.kind)"no converter"===e?(i.container_div.addClass("error"),i.show_message(P)):"no data"===e||void 0!==e.data&&(null===e.data||0===e.data.length)?(i.container_div.addClass("nodata"),i.show_message("No data for this chrom/contig.")):"pending"===e?(i.container_div.addClass("pending"),i.show_message("Preparing data. This can take a while for a large dataset. If the visualization is saved and closed, preparation will continue in the background."),setTimeout(function(){i.init()},i.data_query_wait)):"data"!==e&&"data"!==e.status||(e.valid_chroms&&(i.valid_chroms=e.valid_chroms,i.update_icons()),i.tiles_div.text("Ready for display"),i.view.chrom?(i.tiles_div.text(""),i.tiles_div.css("height",i.visible_height_px+"px"),i.enabled=!0,t.when.apply(t,i.predraw_init()).done(function(){n.resolve(),i.container_div.removeClass("nodata error pending"),i.request_draw()})):n.resolve());else{i.container_div.addClass("error");var r=i.show_message("Cannot display dataset due to an error. ");e.message&&(r.append(t("<a href='javascript:void(0);'></a>").text("View error").click(function(){Galaxy.modal.show({title:(0,l.default)("Trackster Error"),body:"<pre>"+e.message+"</pre>",buttons:{Close:function(){Galaxy.modal.hide()}}})})),r.append(t("<span/>").text(" ")),r.append(t("<a href='javascript:void(0);'></a>").text("Try again").click(function(){i.init(!0)})))}}),this.update_icons(),n}},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(i&&void 0!==i.min&&void 0!==i.max){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_default_value("min_value",n),e.config.set_default_value("max_value",r),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},get_drawables:function(){return this}});var Y=function(e,i,n){X.call(this,e,i,n);var r=this;if(R(r.container_div,r.drag_handle_class,".group",r),this.filters_manager=new x.default.FiltersManager(this,"filters"in n?n.filters:null),this.data_manager.set("filters_manager",this.filters_manager),this.filters_available=!1,this.tool=n.tool?new q(c.extend(n.tool,{track:this,tool_state:n.tool_state})):null,this.tile_cache=new d.default.Cache(10),this.left_offset=0,this.header_div&&(this.set_filters_manager(this.filters_manager),this.tool)){var a=new B({model:this.tool});a.render(),this.dynamic_tool_div=a.$el,this.header_div.after(this.dynamic_tool_div)}this.tiles_div=t("<div/>").addClass("tiles").appendTo(this.content_div),this.config.get_value("content_visible")||this.tiles_div.hide(),this.overlay_div=t("<div/>").addClass("overlay").appendTo(this.content_div),n.mode&&this.change_mode(n.mode)};$(Y.prototype,I.prototype,X.prototype,{action_icons_def:X.prototype.action_icons_def.concat([{name:"show_more_rows_icon",title:"To minimize track height, not all feature rows are displayed. Click to display more rows.",css_class:"exclamation",on_click_fn:function(e){t(".tooltip").remove(),e.slotters[e.view.resolution_px_b].max_rows*=2,e.request_draw({clear_tile_cache:!0})},hide:!0}]),copy:function(t){var e=this.to_dict();$(e,{data_manager:this.data_manager});var i=new this.constructor(this.view,t,e);return i.change_mode(this.mode),i.enabled=this.enabled,i},set_filters_manager:function(t){this.filters_manager=t,this.header_div.after(this.filters_manager.parent_div)},to_dict:function(){return{track_type:this.get_type(),dataset:{id:this.dataset.id,hda_ldda:this.dataset.get("hda_ldda")},prefs:this.config.to_key_value_dict(),mode:this.mode,filters:this.filters_manager.to_dict(),tool_state:this.tool?this.tool.state_dict():{}}},set_min_max:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(isNaN(parseFloat(e.config.get_value("min_value")))||isNaN(parseFloat(e.config.get_value("max_value")))){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},change_mode:function(t){var e=this;return e.mode=t,e.config.set_value("mode",t),"Auto"===t&&this.data_manager.clear(),e.request_draw({clear_tile_cache:!0}),this.action_icons.mode_icon.attr("title","Set display mode (now: "+e.mode+")"),e},update_icons:function(){var t=this;t.action_icons.filters_icon.toggle(t.filters_available),t.action_icons.tools_icon.toggle(null!==t.tool),t.action_icons.param_space_viz_icon.toggle(null!==t.tool)},_gen_tile_cache_key:function(t,e){return t+"_"+e},request_draw:function(t){t&&t.clear_tile_cache&&this.tile_cache.clear(),this.view.request_redraw(t,this)},before_draw:function(){this.max_height_px=0},_draw:function(e){if(this.can_draw()){var i=e&&e.clear_after,n=this.view.low,r=this.view.high,a=this.view.container.width(),o=this.view.resolution_px_b,s=1/o;this.is_overview&&(n=this.view.max_low,r=this.view.max_high,o=a/(view.max_high-view.max_low),s=1/o),this.before_draw(),this.tiles_div.children().addClass("remove");for(var l,u,h=Math.floor(400*s),f=Math.floor(n/h),p=[],m=[];f*h<r;)l=new d.default.GenomeRegion({chrom:this.view.chrom,start:f*h,end:Math.min((f+1)*h,this.view.max_high)}),u=this.draw_helper(l,o,e),p.push(u),t.when(u).then(function(t){m.push(t)}),f+=1;i||this.tiles_div.children(".remove").removeClass("remove").remove();var v=this;t.when.apply(t,p).then(function(){v.tiles_div.children(".remove").remove(),m=c.filter(m,function(t){return null!==t}),0!==m.length&&v.postdraw_actions(m,a,o,i)})}},_add_yaxis_label:function(e,i){var n=this,r="max"===e?"top":"bottom",o="max"===e?"max":"min",s="max"===e?"max_value":"min_value",l=this.container_div.find(".yaxislabel."+r),u=a(n.config.get_value(s),1);i=i||function(){n.request_draw({clear_tile_cache:!0})},0!==l.length?l.text(u):(l=t("<div/>").text(u).make_text_editable({num_cols:12,on_finish:function(e){t(".tooltip").remove(),n.config.set_value(s,a(e,1)),i()},help_text:"Set "+o+" value"}).addClass("yaxislabel "+r).css("color",this.config.get_value("label_color")),this.container_div.prepend(l))},postdraw_actions:function(t,e,i,n){if(c.filter(t,function(t){return t instanceof W}).length>0){this.max_height_px=0;var r=this;c.each(t,function(t){t instanceof W||(t.html_elt.remove(),r.draw_helper(t.region,i,{force:!0,mode:"Coverage"}))}),r._add_yaxis_label("max")}else this.container_div.find(".yaxislabel").remove(),c.find(t,function(t){return t.has_icons})&&c.each(t,function(t){t.has_icons||t.html_elt.css("padding-top",20)})},get_mode:function(t){return this.mode},update_auto_mode:function(t){},_get_drawables:function(){return[this]},draw_helper:function(e,i,n){n||(n={});var r=n.force,a=n.mode||this.mode,o=1/i,s=this,l=this._get_drawables(),u=this._gen_tile_cache_key(i,e),h=r?void 0:s.tile_cache.get_elt(u);if(h)return function(t){return t&&"track"in t}(h)&&s.show_tile(h,i),h;if(!1===n.data_fetch)return null;var d=function(){var t=c.find(N,function(t){return t===a})?"Coverage":a,i=c.map(l,function(i){return i.data_manager.get_data(e,t,o,s.data_url_extra_params)});return view.reference_track&&i.push(view.reference_track.data_manager.get_data(e,a,o,view.reference_track.data_url_extra_params)),i},f=t.Deferred();return s.tile_cache.set_elt(u,f),t.when.apply(t,d()).then(function(){var r,a=d(),o=a;if(c.find(a,function(t){return v.default.is_deferred(t)}))return s.tile_cache.set_elt(u,void 0),void t.when(s.draw_helper(e,i,n)).then(function(t){f.resolve(t)});view.reference_track&&(r=view.reference_track.data_manager.subset_entry(a.pop(),e));var h=[],p=[];c.each(l,function(t,e){var n=t.mode,r=o[e];"Auto"===n&&(n=t.get_mode(r),t.update_auto_mode(n)),h.push(n),p.push(t.get_canvas_height(r,n,i,b))});var m,g=s.view.canvas_manager.new_canvas(),_=e.get("start"),y=e.get("end"),b=Math.ceil((y-_)*i)+s.left_offset,w=c.max(p);g.width=b,g.height=n.height||w;var x=g.getContext("2d");x.translate(s.left_offset,0),l.length>1&&(x.globalAlpha=.5,x.globalCompositeOperation="source-over"),c.each(l,function(t,n){m=t.draw_tile(o[n],x,h[n],e,i,r)}),void 0!==m&&(s.tile_cache.set_elt(u,m),s.show_tile(m,i)),f.resolve(m)}),f},get_canvas_height:function(t,e,i,n){return this.visible_height_px},_draw_line_track_tile:function(t,e,i,n,r){-1!==[void 0,null].indexOf(this.config.get_value("min_value"))&&this.config.set_value("min_value",0),-1!==[void 0,null,0].indexOf(this.config.get_value("max_value"))&&this.config.set_value("max_value",c.max(c.map(t.data,function(t){return t[1]}))||0);var a=e.canvas;return new b.default.LinePainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new W(this,n,r,a,t.data)},draw_tile:function(t,e,i,n,r,a){},show_tile:function(t,e){var i=t.html_elt;t.predisplay_actions();var n=Math.round((t.low-(this.is_overview?this.view.max_low:this.view.low))*e);this.left_offset&&(n-=this.left_offset),i.css("left",n),i.hasClass("remove")?i.removeClass("remove"):this.tiles_div.append(i),i.css("height","auto"),this.max_height_px=Math.max(this.max_height_px,i.height()-2),i.parent().children().css("height",this.max_height_px+"px");var r=this.max_height_px;0!==this.visible_height_px&&(r=Math.min(this.max_height_px,this.visible_height_px)),this.tiles_div.css("height",r+"px")},tool_region_and_parameters_str:function(t){var e=this;return" - region=["+(void 0!==t?t.toString():"all")+"], parameters=["+c.values(e.tool.get_inputs_dict()).join(", ")+"]"},data_and_mode_compatible:function(t,e){return"Auto"===e||("Coverage"===e?"bigwig"===t.dataset_type:"bigwig"!==t.dataset_type&&"no_detail"!==t.extra_info)},can_subset:function(t){return!t.message&&"no_detail"!==t.extra_info&&("bigwig"!==t.dataset_type||t.data[1][0]-t.data[0][0]==1)},init_for_tool_data:function(){this.data_manager.set("data_type","raw_data"),this.data_query_wait=1e3,this.dataset_check_type="state"}});var J=function(t,e){X.call(this,t,e,{resize:!1,header:!1}),this.container_div.addClass("label-track")};$(J.prototype,X.prototype,{init:function(){this.enabled=!0},predraw_init:function(){},_draw:function(e){for(var i=this.view,n=i.high-i.low,r=Math.floor(Math.pow(10,Math.floor(Math.log(n)/Math.log(10)))),a=Math.floor(i.low/r)*r,o=this.view.container.width(),s=t("<div/>").addClass("label-container");a<i.high;){var l=Math.floor((a-i.low)/n*o);s.append(t("<div/>").addClass("pos-label").text(v.default.commatize(a)).css({left:l})),a+=r}this.content_div.children(":first").remove(),this.content_div.append(s)}});var K=function(t,e,i){if(Y.call(this,t,e,i),this.drawables=[],"drawables"in i){for(var n,r=0;r<i.drawables.length;r++)n=i.drawables[r],this.drawables[r]=at(n,t,null),n.left_offset>this.left_offset&&(this.left_offset=n.left_offset);this.enabled=!0}c.each(this.drawables,function(t){(t instanceof et||t instanceof nt)&&t.change_mode("Coverage")}),this.update_icons(),this.obj_type="CompositeTrack"};$(K.prototype,Y.prototype,{display_modes:N,build_config_params:function(){return c.union(I.prototype.config_params,[{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},action_icons_def:[{name:"composite_icon",title:(0,l.default)("Show individual tracks"),css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_group()}}].concat(Y.prototype.action_icons_def),to_dict:L.prototype.to_dict,add_drawable:L.prototype.add_drawable,unpack_drawables:L.prototype.unpack_drawables,config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},on_resize:function(){var t=this.visible_height_px;c.each(this.drawables,function(e){e.visible_height_px=t}),X.prototype.on_resize.call(this)},change_mode:function(t){Y.prototype.change_mode.call(this,t);for(var e=0;e<this.drawables.length;e++)this.drawables[e].change_mode(t)},init:function(){for(var e=[],i=0;i<this.drawables.length;i++)e.push(this.drawables[i].init());var n=this;t.when.apply(t,e).then(function(){n.enabled=!0,n.request_draw()})},update_icons:function(){this.action_icons.filters_icon.hide(),this.action_icons.tools_icon.hide(),this.action_icons.param_space_viz_icon.hide()},can_draw:I.prototype.can_draw,_get_drawables:function(){return this.drawables},show_group:function(){for(var t,e=new H(this.view,this.container,{name:this.config.get_value("name")}),i=0;i<this.drawables.length;i++)t=this.drawables[i],t.update_icons(),e.add_drawable(t),t.container=e,e.content_div.append(t.container_div);this.container.replace_drawable(this,e,!0);e.request_draw({clear_tile_cache:!0})},before_draw:function(){var t=c.min(c.map(this.drawables,function(t){return t.config.get_value("min_value")})),e=c.max(c.map(this.drawables,function(t){return t.config.get_value("max_value")}));this.config.set_value("min_value",t),this.config.set_value("max_value",e),c.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)})},update_all_min_max:function(){var t=this.config.get_value("min_value"),e=this.config.get_value("max_value");c.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)}),this.request_draw({clear_tile_cache:!0})},postdraw_actions:function(t,e,i,n){var r,a=-1;for(r=0;r<t.length;r++){var o=t[r].html_elt.find("canvas").height();o>a&&(a=o)}for(r=0;r<t.length;r++){var s=t[r];s.html_elt.find("canvas").height()!==a&&(this.draw_helper(s.region,i,{force:!0,height:a}),s.html_elt.remove())}var l=this,u=function(){l.update_all_min_max()};this._add_yaxis_label("min",u),this._add_yaxis_label("max",u)}});var Q=function(t){Y.call(this,t,{content_div:t.top_labeltrack},{resize:!1,header:!1}),this.left_offset=t.canvas_manager.char_width_px,this.container_div.addClass("reference-track"),this.data_url=Galaxy.root+"api/genomes/"+this.view.dbkey,this.data_url_extra_params={reference:!0},this.data_manager=new d.default.GenomeReferenceDataManager({data_url:this.data_url,can_subset:this.can_subset}),this.hide_contents()};$(Q.prototype,I.prototype,Y.prototype,{build_config_params:function(){return c.union(I.prototype.config_params,[{key:"height",type:"int",default_value:13,hidden:!0}])},init:function(){this.data_manager.clear(),this.enabled=!0},predraw_init:function(){},can_draw:I.prototype.can_draw,draw_helper:function(t,e,i){var n,r=this.tiles_div.is(":visible"),a=null;return e>this.view.canvas_manager.char_width_px?(this.tiles_div.show(),n=!0,a=Y.prototype.draw_helper.call(this,t,e,i)):(n=!1,this.tiles_div.hide()),r!==n&&this.view.resize_viewport(),a},can_subset:function(t){return!0},draw_tile:function(t,e,i,n,r){var a=this.data_manager.subset_entry(t,n),o=a.data,s=e.canvas;e.font=e.canvas.manager.default_font,e.textAlign="center";for(var l=0,u=o.length;l<u;l++)e.fillStyle=this.view.get_base_color(o[l]),e.fillText(o[l],Math.floor(l*r),10);return new U(this,n,r,s,a)}});var Z=function(e,i,n){this.mode="Histogram",Y.call(this,e,i,n),this.left_offset=30;var r=this;t.when(o(Galaxy.root+"datasets/"+this.dataset.id+"/display")).then(function(t){t&&(r.data_manager=new O.default.BBIDataManager({dataset:r.dataset}))})};$(Z.prototype,I.prototype,Y.prototype,{display_modes:N,build_config_params:function(){return c.union(I.prototype.config_params,[{key:"color",label:"Color",type:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},before_draw:function(){},draw_tile:function(t,e,i,n,r){return this._draw_line_track_tile(t,e,i,n,r)},can_subset:function(t){return t.data[1][0]-t.data[0][0]==1},postdraw_actions:function(t,e,i,n){this._add_yaxis_label("max"),this._add_yaxis_label("min")}});var tt=function(t,e,i){this.mode="Heatmap",Y.call(this,t,e,i)};$(tt.prototype,I.prototype,Y.prototype,{display_modes:["Heatmap"],build_config_params:function(){return c.union(I.prototype.config_params,[{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"min_value",label:"Min Value",type:"int",default_value:void 0},{key:"max_value",label:"Max Value",type:"int",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:500,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){t.data})},draw_tile:function(t,e,i,n,r){var a=e.canvas;return new b.default.DiagonalHeatmapPainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new U(this,n,r,a,t.data)}});var et=function(t,e,i){Y.call(this,t,e,i),this.container_div.addClass("feature-track"),this.summary_draw_height=30,this.slotters={},this.start_end_dct={},this.left_offset=200,this.set_painter_from_config()};$(et.prototype,I.prototype,Y.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return c.union(I.prototype.config_params,[{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0,help:"Show the number of items in each bin when drawing summary histogram"},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.set_painter_from_config(),this.request_draw({clear_tile_cache:!0})},set_painter_from_config:function(){"arcs"===this.config.get_value("connector_style")?this.painter=b.default.ArcLinkedFeaturePainter:this.painter=b.default.LinkedFeaturePainter},postdraw_actions:function(e,i,n,r){Y.prototype.postdraw_actions.call(this,e,i,n,r);var a,o=this;if(0===c.filter(e,function(t){return t instanceof W}).length){var s={};c.each(c.pluck(e,"incomplete_features"),function(t){c.each(t,function(t){s[t[0]]=t})});var l=this;c.each(e,function(e){var i=c.omit(s,c.map(e.incomplete_features,function(t){return t[0]}));if(i=c.omit(i,c.keys(e.other_tiles_features_drawn)),0!==c.size(i)){var n={data:c.values(i)},r=l.view.canvas_manager.new_canvas(),a=r.getContext("2d");r.height=Math.max(e.canvas.height,l.get_canvas_height(n,e.mode,e.w_scale,100)),r.width=e.canvas.width,a.drawImage(e.canvas,0,0),a.translate(o.left_offset,0);var u=l.draw_tile(n,a,e.mode,e.region,e.w_scale,e.seq_data);t(e.canvas).replaceWith(t(u.canvas)),e.canvas=r,c.extend(e.other_tiles_features_drawn,s)}})}if(o.filters_manager){var u,h=o.filters_manager.filters;for(u=0;u<h.length;u++)h[u].update_ui_elt();var d,f,p=!1;for(a=0;a<e.length;a++)if(e[a].data.length)for(d=e[a].data[0],u=0;u<h.length;u++)if(f=h[u],f.applies_to(d)&&f.min!==f.max){p=!0;break}o.filters_available!==p&&(o.filters_available=p,o.filters_available||o.filters_manager.hide(),o.update_icons())}if(e[0]instanceof G){var m=!0;for(a=0;a<e.length;a++)if(!e[a].all_slotted){m=!1;break}this.action_icons.show_more_rows_icon.toggle(!m)}else this.action_icons.show_more_rows_icon.hide()},update_auto_mode:function(t){"Auto"===this.mode&&("no_detail"===t&&(t="feature spans"),this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+t+")"))},incremental_slots:function(t,e,i){var n=this.view.canvas_manager.dummy_context,r=this.slotters[t];return r&&r.mode===i||(r=new _.default.FeatureSlotter(t,i,100,function(t){return n.measureText(t)}),this.slotters[t]=r),r.slot_features(e)},get_mode:function(t){return"no_detail"===t.extra_info||this.is_overview?"no_detail":this.view.high-this.view.low>12e3?"Squish":"Pack"},get_canvas_height:function(t,e,i,n){if("Coverage"===e||"bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.incremental_slots(i,t.data,e),a=new this.painter(null,null,null,this.config.to_key_value_dict(),e);return Math.max(this.min_height_px,a.get_required_height(r,n))},draw_tile:function(t,e,i,n,r,a,o){var s=this,l=e.canvas,u=n.get("start"),c=n.get("end"),h=this.left_offset;if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,i,n,r);var d=[],f=this.slotters[r].slots,p=!0;if(t.data)for(var m=this.filters_manager.filters,v=0,g=t.data.length;v<g;v++){for(var _,y=t.data[v],b=!1,w=0,x=m.length;w<x;w++)if(_=m[w],_.update_attrs(y),!_.keep(y)){b=!0;break}b||(d.push(y),y[0]in f||(p=!1))}var k=this.filters_manager.alpha_filter?new V(this.filters_manager.alpha_filter):null,C=this.filters_manager.height_filter?new V(this.filters_manager.height_filter):null,S=new this.painter(d,u,c,this.config.to_key_value_dict(),i,k,C,a,function(t){return s.view.get_base_color(t)}),T=null;if(e.fillStyle=this.config.get_value("block_color"),e.font=e.canvas.manager.default_font,e.textAlign="right",t.data){var A=S.draw(e,l.width,l.height,r,f);T=A.feature_mapper,incomplete_features=A.incomplete_features,T.translation=-h}return o?void 0:new G(s,n,r,l,t.data,i,t.message,p,T,incomplete_features,a)}});var it=function(t,e,i){Y.call(this,t,e,i),this.painter=b.default.VariantPainter,this.summary_draw_height=30,this.left_offset=30};$(it.prototype,I.prototype,Y.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return c.union(I.prototype.config_params,[{key:"color",label:"Histogram color",type:"color"},{key:"show_sample_data",label:"Show sample data",type:"bool",default_value:!0},{key:"show_labels",label:"Show summary and sample labels",type:"bool",default_value:!0},{key:"summary_height",label:"Locus summary height",type:"float",default_value:20},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},draw_tile:function(t,e,i,n,r){if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,"Histogram",n,r);var a=this.view;return new this.painter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i,function(t){return a.get_base_color(t)}).draw(e,e.canvas.width,e.canvas.height,r),new U(this,n,r,e.canvas,t.data)},get_canvas_height:function(t,e,i,n){if("bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.dataset.get_metadata("sample_names")?this.dataset.get_metadata("sample_names").length:0;return 0===r&&0!==t.data.length&&(r=t.data[0][7].match(/,/g),r=null===r?1:r.length+1),new this.painter(null,null,null,this.config.to_key_value_dict(),e).get_required_height(r)},predraw_init:function(){var t=[X.prototype.predraw_init.call(this)];return this.dataset.get_metadata("sample_names")||t.push(this.dataset.fetch()),t},postdraw_actions:function(e,i,n,r){Y.prototype.postdraw_actions.call(this,e,i,n,r);var a=c.filter(e,function(t){return t instanceof W}),o=this.dataset.get_metadata("sample_names");if(0===a.length&&this.config.get_value("show_labels")&&o&&o.length>1){var s;if(0===this.container_div.find(".yaxislabel.variant").length&&(s=this.config.get_value("summary_height")/2,this.tiles_div.prepend(t("<div/>").text("Summary").addClass("yaxislabel variant top").css({"font-size":s+"px",top:(this.config.get_value("summary_height")-s)/2+"px"})),this.config.get_value("show_sample_data"))){var l=o.join("<br/>");this.tiles_div.prepend(t("<div/>").html(l).addClass("yaxislabel variant top sample").css({top:this.config.get_value("summary_height")}))}s=("Squish"===this.mode?5:10)+"px",t(this.tiles_div).find(".sample").css({"font-size":s,"line-height":s}),t(this.tiles_div).find(".yaxislabel").css("color",this.config.get_value("label_color"))}else this.container_div.find(".yaxislabel.variant").remove()}});var nt=function(t,e,i){et.call(this,t,e,i),this.painter=b.default.ReadPainter,this.update_icons()};$(nt.prototype,I.prototype,Y.prototype,et.prototype,{build_config_params:function(){return c.union(I.prototype.config_params,[{key:"block_color",label:"Histogram color",type:"color"},{key:"detail_block_color",label:"Sense strand block color",type:"color",default_value:"#AAAAAA"},{key:"reverse_strand_color",label:"Antisense strand block color",type:"color",default_value:"#DDDDDD"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:!1},{key:"show_differences",label:"Show differences only",type:"bool",default_value:!0},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})}});var rt={CompositeTrack:K,DrawableGroup:H,DiagonalHeatmapTrack:tt,FeatureTrack:et,LineTrack:Z,ReadTrack:nt,VariantTrack:it,VcfTrack:it},at=function(t,e,i){if("copy"in t)return t.copy(i);var n=t.obj_type;return n||(n=t.track_type),new rt[n](e,i,t)};e.default={TracksterView:z,DrawableGroup:H,LineTrack:Z,FeatureTrack:et,DiagonalHeatmapTrack:tt,ReadTrack:nt,VariantTrack:it,CompositeTrack:K,object_from_template:at}}).call(e,i(0),i(2))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(1),a=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(r),o=t.View.extend({className:"track-header",initialize:function(){this.model.config.get("name").on("change:value",this.update_name,this),this.render()},render:function(){this.$el.append(n("<div/>").addClass(this.model.drag_handle_class)),this.$el.append(n("<div/>").addClass("track-name").text(this.model.config.get_value("name"))),this.action_icons={},this.render_action_icons(),this.$el.dblclick(function(t){t.stopPropagation()}),this.$el.append(n("<div style='clear: both'/>"))},update_name:function(){this.$el.find(".track-name").text(this.model.config.get_value("name"))},render_action_icons:function(){var t=this;this.icons_div=n("<div/>").addClass("track-icons").hide().appendTo(this.$el),a.each(this.model.action_icons_def,function(e){t.add_action_icon(e.name,e.title,e.css_class,e.on_click_fn,e.prepend,e.hide)}),this.set_display_modes(this.model.display_modes)},add_action_icon:function(t,e,i,r,a,o){var s=this;this.action_icons[t]=n("<a/>").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(function(){r(s.model)}).appendTo(this.icons_div),o&&this.action_icons[t].hide()},set_display_modes:function(t,e){if(t){this.model.display_modes=t,this.model.mode=e||this.model.config.get_value("mode")||this.model.display_modes[0],this.action_icons.mode_icon.attr("title","Set display mode (now: "+this.mode+")");for(var i=this.model,n={},r=0,a=i.display_modes.length;r<a;r++){var o=i.display_modes[r];n[o]=function(t){return function(){i.change_mode(t)}}(o)}make_popupmenu(this.action_icons.mode_icon,n)}}});e.default={TrackHeaderView:o}}).call(e,i(2),i(0))},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=r.extend,o=function(t,e){this.slot=t,this.feature=e},s=function(t,e,i,n){this.slots={},this.start_end_dct={},this.w_scale=t,this.mode=e,this.include_label="Pack"===e,this.max_rows=i,this.measureText=n};a(s.prototype,{_get_draw_coords:function(t){var e=Math.floor(t[1]*this.w_scale),i=Math.ceil(t[2]*this.w_scale),n=t[3];if(void 0!==n&&this.include_label){var r=this.measureText(n).width+7;e-r>=0?(e-=r,"left"):(i+=r,"right")}return[e,i]},_find_slot:function(t){for(var e=t[0],i=t[1],n=0;n<=this.max_rows;n++){var r=!1,a=this.start_end_dct[n];if(void 0!==a)for(var o=0,s=a.length;o<s;o++){var l=a[o];if(i>l[0]&&e<l[1]){r=!0;break}}if(!r)return n}return-1},slot_features:function(t){for(var e,i,n=this.start_end_dct,r=[],a=0,s=0,l=t.length;s<l;s++){e=t[s],i=e[0];var u=this.slots[i];if(u){if(e[1]<u.feature[1]||u.feature[2]<e[2])for(var c=this._get_draw_coords(u.feature),h=this._get_draw_coords(e),d=this.start_end_dct[u.slot],f=0;f<d.length;f++){var p=d[f];p[0]===c[0]&&p[1]===c[1]&&(d[f]=h)}a=Math.max(a,this.slots[i].slot)}else r.push(s)}for(var s=0,l=r.length;s<l;s++){e=t[r[s]],i=e[0];var m=this._get_draw_coords(e),v=this._find_slot(m);v>=0&&(void 0===n[v]&&(n[v]=[]),n[v].push(m),this.slots[i]=new o(v,e),a=Math.max(a,v))}return a+1}}),e.default={FeatureSlotter:s}},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=function(t,e){var i=t[0],n=t[1],r=e[0],a=e[1];return i<r?n<=r?1001:n<=a?1003:1002:i>a?1006:n<=a?1005:1004},o=function(t,e){var i=a(t,e);return 1001!==i&&1006!==i},s=function(t,e,i,n,r,a){void 0===a&&(a=4);var o,s=n-e,l=r-i,u=Math.floor(Math.sqrt(s*s+l*l)/a),c=s/u,h=l/u;for(o=0;o<u;o++,e+=c,i+=h)o%2==0&&t.fillRect(e,i,a,1)},l=function(t,e,i,n){var r=e-n/2,a=e+n/2,o=i-Math.sqrt(3*n/2);t.beginPath(),t.moveTo(r,o),t.lineTo(a,o),t.lineTo(e,i),t.lineTo(r,o),t.strokeStyle=this.fillStyle,t.fill(),t.stroke(),t.closePath()},u=function(t){this.default_val=t||1};u.prototype.gen_val=function(t){return this.default_val};var c=function(t){this.incomplete_features=t.incomplete_features,this.feature_mapper=t.feature_mapper},h=function(t,e,i,n,a){this.data=t,this.view_start=e,this.view_end=i,this.prefs=r.extend({},this.default_prefs,n),this.mode=a};h.prototype.default_prefs={},h.prototype.draw=function(t,e,i,n){},h.prototype.get_start_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,-.5)},h.prototype.get_end_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,.5)},h.prototype.get_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,0)},h.prototype._chrom_pos_to_draw_pos=function(t,e,i){return Math.floor(e*(Math.max(0,t-this.view_start)+i))};var d=function(t,e,i,n,r){h.call(this,t,e,i,n,r)};d.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Histogram",color:"#000",overflow_color:"#F66"},d.prototype.draw=function(t,e,i,n){var a=!1,o=this.prefs.min_value,s=this.prefs.max_value,l=s-o,u=i,c=this.view_start,h=this.mode,d=this.data;t.save();var f=Math.round(i+o/l*i);"Intensity"!==h&&(t.fillStyle="#aaa",t.fillRect(0,f,e,1)),t.beginPath();var p,m,v;v=d.length>1?r.map(d.slice(0,-1),function(t,e){return Math.ceil((d[e+1][0]-d[e][0])*n)}):[10];for(var g,_=this.prefs.block_color||this.prefs.color,y=parseInt(_.slice(1),16),b=(16711680&y)>>16,w=(65280&y)>>8,x=255&y,k=!1,C=!1,S=0,T=d.length;S<T;S++)if(t.fillStyle=t.strokeStyle=_,k=C=!1,g=v[S],p=Math.floor((d[S][0]-c-.5)*n),null!==(m=d[S][1])){if(m<o?(C=!0,m=o):m>s&&(k=!0,m=s),"Histogram"===h)m=Math.round(m/l*u),t.fillRect(p,f,g,-m);else if("Intensity"===h){var A=(m-o)/l,M=Math.round(b+(255-b)*(1-A)),E=Math.round(w+(255-w)*(1-A)),O=Math.round(x+(255-x)*(1-A));t.fillStyle="rgb("+M+","+E+","+O+")",t.fillRect(p,0,g,u)}else m=Math.round(u-(m-o)/l*u),a?t.lineTo(p,m):(a=!0,"Filled"===h?(t.moveTo(p,u),t.lineTo(p,m)):t.moveTo(p,m));if(t.fillStyle=this.prefs.overflow_color,k||C){var $;"Histogram"===h||"Intensity"===h?$=g:(p-=2,$=4),k&&t.fillRect(p,0,$,3),C&&t.fillRect(p,u-3,$,3)}t.fillStyle=_}else a&&"Filled"===h&&t.lineTo(p,u),a=!1;"Filled"===h?(a&&(t.lineTo(p,f),t.lineTo(0,f)),t.fill()):t.stroke(),t.restore()};var f=function(t){this.feature_positions={},this.slot_height=t,this.translation=0,this.y_translation=0};f.prototype.map_feature_data=function(t,e,i,n){this.feature_positions[e]||(this.feature_positions[e]=[]),this.feature_positions[e].push({data:t,x_start:i,x_end:n})},f.prototype.get_feature_data=function(t,e){var i,n=Math.floor((e-this.y_translation)/this.slot_height);if(!this.feature_positions[n])return null;t+=this.translation;for(var r=0;r<this.feature_positions[n].length;r++)if(i=this.feature_positions[n][r],t>=i.x_start&&t<=i.x_end)return i.data};var p=function(t,e,i,n,r,a,o){h.call(this,t,e,i,n,r),this.alpha_scaler=a||new u,this.height_scaler=o||new u,this.max_label_length=200};p.prototype.default_prefs={block_color:"#FFF",connector_color:"#FFF"},r.extend(p.prototype,{get_required_height:function(t,e){var i=this.get_row_height(),n=i,r=this.mode;return"no_detail"!==r&&"Squish"!==r&&"Pack"!==r||(i=t*n),i+this.get_top_padding(e)},get_top_padding:function(t){return 0},draw:function(t,e,i,n,r){var a=this.data,o=this.view_start,s=this.view_end;t.save(),t.fillStyle=this.prefs.block_color,t.textAlign="right";for(var l,u=this.get_row_height(),h=new f(u),d=[],p=0,m=a.length;p<m;p++){var v=a[p],g=v[0],_=v[1],y=v[2],b=r&&void 0!==r[g]?r[g].slot:null;("Dense"===this.mode||null!==b)&&_<s&&y>o&&(l=this.draw_element(t,this.mode,v,b,o,s,n,u,e),h.map_feature_data(v,b,l[0],l[1]),(_<o||y>s)&&d.push(v))}return t.restore(),h.y_translation=this.get_top_padding(e),new c({incomplete_features:d,feature_mapper:h})},draw_element:function(t,e,i,n,r,a,o,s,l){return[0,0]}});var m=function(t,e,i,n,r,a,o){p.call(this,t,e,i,n,r,a,o),this.draw_background_connector=!0,this.draw_individual_connectors=!1};r.extend(m.prototype,p.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"no_detail"===t?3:"Squish"===t?5:10},draw_element:function(t,e,i,n,r,a,o,s,l){var u,c=(i[0],i[1]),h=i[2],d=i[3],f=i[4],p=Math.floor(Math.max(0,(c-r-.5)*o)),m=Math.ceil(Math.min(l,Math.max(0,(h-r-.5)*o))),v=p,g=m,u=("Dense"===e?0:0+n)*s+this.get_top_padding(l),_=null,y=null,b=f&&"+"!==f&&"."!==f?this.prefs.reverse_strand_color:this.prefs.block_color,w=this.prefs.label_color;if(t.globalAlpha=this.alpha_scaler.gen_val(i),"Dense"===e&&(n=1),"no_detail"===e)t.fillStyle=b,t.fillRect(p,u+5,m-p,1);else{var x=i[5],k=i[6],C=i[7],S=!0;x&&k&&(_=Math.floor(Math.max(0,(x-r)*o)),y=Math.ceil(Math.min(l,Math.max(0,(k-r)*o))));var T,A;if("Squish"===e?(T=1,A=3,S=!1):(T=5,A=9),C){var M,E;"Squish"===e||"Dense"===e?(M=u+Math.floor(1.5)+1,E=1):f?(M=u,E=A):(M+=2.5,E=1),this.draw_background_connector&&("Squish"===e||"Dense"===e?t.fillStyle="#ccc":f?"+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand")):t.fillStyle="#ccc",t.fillRect(p,M,m-p,E));for(var O=0,$=C.length;O<$;O++){var D,j,R=C[O],P=Math.floor(Math.max(0,(R[0]-r-.5)*o)),N=Math.ceil(Math.min(l,Math.max((R[1]-r-.5)*o)));if(!(P>N)){if(t.fillStyle=b,t.fillRect(P,u+(A-T)/2+1,N-P,T),void 0!==_&&k>x&&!(P>y||N<_)){var I=Math.max(P,_),L=Math.min(N,y);t.fillRect(I,u+1,L-I,A),1===C.length&&"Pack"===e&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),I+14<L&&(I+=2,L-=2),t.fillRect(I,u+1,L-I,A))}this.draw_individual_connectors&&D&&this.draw_connector(t,D,j,P,N,u),D=P,j=N}}if("Pack"===e){t.globalAlpha=1,t.fillStyle="white";var H=this.height_scaler.gen_val(i),z=Math.ceil(A*H),q=Math.round((A-z)/2);1!==H&&(t.fillRect(p,M+1,m-p,q),t.fillRect(p,M+A-q+1,m-p,q))}}else t.fillStyle=b,t.fillRect(p,u+1,m-p,A),f&&S&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),t.fillRect(p,u+1,m-p,A));t.globalAlpha=1,d&&"Pack"===e&&c>r&&(t.fillStyle=w,0===r&&p-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,m+2,u+8,this.max_label_length),g+=t.measureText(d).width+2):(t.textAlign="right",t.fillText(d,p-2,u+8,this.max_label_length),v-=t.measureText(d).width+2))}return t.globalAlpha=1,[v,g]}});var v=function(t,e,i,n,r,a,o,s,l){p.call(this,t,e,i,n,r,a,o),this.ref_seq=s?s.data:null,this.base_color_fn=l};r.extend(v.prototype,p.prototype,{get_row_height:function(){var t,e=this.mode;return"Dense"===e?t=10:"Squish"===e?t=5:(t=10,this.prefs.show_insertions&&(t*=2)),t},_parse_cigar:function(t){var e="MIDNSHP=X",i=[[0,0]],n=i[0],a=0,o=r.map(t.match(/[0-9]+[MIDNSHP=X]/g),function(t){var r=parseInt(t.slice(0,-1),10),o=t.slice(-1);return"N"===o?0!==n[1]&&(n=[a+r,a+r],i.push(n)):-1==="ISHP".indexOf(o)&&(n[1]+=r,a+=r),[e.indexOf(o),r]});return{blocks:i,cigar:o}},draw_read:function(t,e,i,n,r,s,u,c,h,d){var f=function(t){return Math.floor(Math.max(0,(t-r-.5)*i))};t.textAlign="center";var p,m,v=[r,s],g=0,_=0,y=Math.round(i/2),b=t.canvas.manager.char_width_px,w="+"===h?this.prefs.detail_block_color:this.prefs.reverse_strand_color,k="Pack"===e,C=k?9:3,S=n+1,T=new x(t,C,i,e),A=[],M=[],E=this._parse_cigar(c);c=E.cigar,A=E.blocks;for(var O=0;O<A.length;O++){var $=A[O];o([u+$[0],u+$[1]],v)&&(p=f(u+$[0]),m=f(u+$[1]),p===m&&(m+=1),t.fillStyle=w,t.fillRect(p,S,m-p,C))}for(var D=0,j=c.length;D<j;D++){var R=c[D],P="MIDNSHP=X"[R[0]],N=R[1],I=u+g;if(p=f(I),m=f(I+N),o([I,I+N],v))switch(p===m&&(m+=1),P){case"H":case"S":case"P":break;case"M":g+=N;break;case"=":case"X":var L="";"X"===P?L=d.slice(_,_+N):this.ref_seq&&(L=this.ref_seq.slice(Math.max(0,I-r),Math.min(I-r+N,s-r)));for(var H=Math.max(I,r),z=0;z<L.length;z++)if(L&&!this.prefs.show_differences||"X"===P){var q=Math.floor(Math.max(0,(H+z-r)*i));t.fillStyle=this.base_color_fn(L[z]),k&&i>b?t.fillText(L[z],q,n+9):i>.05&&t.fillRect(q-y,S,Math.max(1,Math.round(i)),C)}"X"===P&&(_+=N),g+=N;break;case"N":t.fillStyle="#ccc",t.fillRect(p,S+(C-1)/2,m-p,1),g+=N;break;case"D":T.draw_deletion(p,S,N),g+=N;break;case"I":var F=p-y;if(o([I,I+N],v)){var B=d.slice(_,_+N);if(this.prefs.show_insertions){var V=p-(m-p)/2;if(("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b){switch(t.fillStyle="yellow",t.fillRect(V-y,n-9,m-p,9),M[M.length]={type:"triangle",data:[F,n+4,5]},t.fillStyle="#ccc",a([I,I+N],v)){case 1003:B=B.slice(r-I);break;case 1004:B=B.slice(0,I-s);break;case 1005:break;case 1002:B=B.slice(r-I,I-s)}for(var z=0,U=B.length;z<U;z++){var q=Math.floor(Math.max(0,(I+z-r)*i));t.fillText(B[z],q-(m-p)/2,n)}}else t.fillStyle="yellow",t.fillRect(V,n+("Dense"!==this.mode?2:5),m-p,"Dense"!==e?3:9)}else("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b&&M.push({type:"text",data:[B.length,F,n+9]})}_+=N}else g=function(t,e,i){return-1!=="M=NXD".indexOf(e)&&(t+=i),t}(g,P,N),_=function(t,e,i){return-1!=="IX".indexOf(e)&&(t+=i),t}(_,P,N)}t.fillStyle="yellow";for(var W,G,X,O=0;O<M.length;O++)W=M[O],G=W.type,X=W.data,"text"===G?(t.save(),t.font="bold "+t.font,t.fillText(X[0],X[1],X[2]),t.restore()):"triangle"===G&&l(t,X[0],X[1],X[2])},draw_element:function(t,e,i,n,r,a,o,l,u){var c=(i[0],i[1]),h=i[2],d=i[3],f=Math.floor(Math.max(-.5*o,(c-r-.5)*o)),p=Math.ceil(Math.min(u,Math.max(0,(h-r-.5)*o))),m=("Dense"===e?0:0+n)*l,v="Pack"===e?9:3;this.prefs.label_color;if(i[5]instanceof Array){var g=!0;i[4][1]>=r&&i[4][0]<=a&&i[4][2]?this.draw_read(t,e,o,m,r,a,i[4][0],i[4][2],i[4][3],i[4][4]):g=!1,i[5][1]>=r&&i[5][0]<=a&&i[5][2]?this.draw_read(t,e,o,m,r,a,i[5][0],i[5][2],i[5][3],i[5][4]):g=!1;var _=Math.ceil(Math.min(u,Math.max(-.5*o,(i[4][1]-r-.5)*o))),y=Math.floor(Math.max(-.5*o,(i[5][0]-r-.5)*o));if(g&&y>_){t.fillStyle="#ccc";var b=m+1+(v-1)/2;s(t,_,b,y,b)}}else this.draw_read(t,e,o,m,r,a,c,i[4],i[5],i[6]);return"Pack"===e&&c>=r&&"."!==d&&(t.fillStyle=this.prefs.label_color,0===r&&f-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,p+2,m+9,this.max_label_length)):(t.textAlign="right",t.fillText(d,f-2,m+9,this.max_label_length))),[0,0]}});var g=function(t,e,i,n,r,a,o){m.call(this,t,e,i,n,r,a,o),this.longest_feature_length=this.calculate_longest_feature_length(),this.draw_background_connector=!1,this.draw_individual_connectors=!0};r.extend(g.prototype,p.prototype,m.prototype,{calculate_longest_feature_length:function(){for(var t=0,e=0,i=this.data.length;e<i;e++){var n=this.data[e],r=n[1],a=n[2];t=Math.max(t,a-r)}return t},get_top_padding:function(t){var e=this.view_end-this.view_start,i=t/e;return Math.min(128,Math.ceil(this.longest_feature_length/2*i))},draw_connector:function(t,e,i,n,r,a){var o=(i+n)/2,s=n-o;Math.PI;s>0&&(t.beginPath(),t.arc(o,a,n-o,Math.PI,0),t.stroke())}});var _=function(t,e){Array.isArray(t)?this.rgb=t:6==t.length?this.rgb=t.match(/.{2}/g).map(function(t){return parseInt(t,16)}):7==t.length?this.rgb=t.substring(1,7).match(/.{2}/g).map(function(t){return parseInt(t,16)}):this.rgb=t.split("").map(function(t){return parseInt(t+t,16)}),this.alpha="number"==typeof e?e:1};_.prototype={eval:function(){return this},toCSS:function(){return this.alpha<1?"rgba("+this.rgb.map(function(t){return Math.round(t)}).concat(this.alpha).join(", ")+")":"#"+this.rgb.map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},toHSL:function(){var t,e,i=this.rgb[0]/255,n=this.rgb[1]/255,r=this.rgb[2]/255,a=this.alpha,o=Math.max(i,n,r),s=Math.min(i,n,r),l=(o+s)/2,u=o-s;if(o===s)t=e=0;else{switch(e=l>.5?u/(2-o-s):u/(o+s),o){case i:t=(n-r)/u+(n<r?6:0);break;case n:t=(r-i)/u+2;break;case r:t=(i-n)/u+4}t/=6}return{h:360*t,s:e,l:l,a:a}},toARGB:function(){return"#"+[Math.round(255*this.alpha)].concat(this.rgb).map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},mix:function(t,e){var i=this,n=e,r=2*n-1,a=i.toHSL().a-t.toHSL().a,o=((r*a==-1?r:(r+a)/(1+r*a))+1)/2,s=1-o,l=[i.rgb[0]*o+t.rgb[0]*s,i.rgb[1]*o+t.rgb[1]*s,i.rgb[2]*o+t.rgb[2]*s],u=i.alpha*n+t.alpha*(1-n);return new _(l,u)}};var y=function(t,e,i,n){this.start_color=new _(t),this.end_color=new _(e),this.start_value=i,this.end_value=n,this.value_range=n-i};y.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t=(t-this.start_value)/this.value_range,this.start_color.mix(this.end_color,1-t).toCSS()};var b=function(t,e,i,n,r){this.positive_ramp=new y(e,i,0,r),this.negative_ramp=new 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g=0,_=f.length;g<_;g++)r=f[g],a=v(r[1]),o=v(r[2]),s=v(r[4]),l=v(r[5]),u=r[6],t.fillStyle=m.map_value(u),t.fillRect(a,s,o-a,l-s);t.restore()};var x=function(t,e,i,n){this.ctx=t,this.row_height=e,this.px_per_base=i,this.draw_details=("Pack"===n||"Auto"===n)&&i>=t.canvas.manager.char_width_px,this.delete_details_thickness=.2};r.extend(x.prototype,{draw_deletion:function(t,e,i){this.ctx.fillStyle="black";var n=(this.draw_details?this.delete_details_thickness:1)*this.row_height;e+=.5*(this.row_height-n),this.ctx.fillRect(t,e,i*this.px_per_base,n)}});var k=function(t,e,i,n,r,a){h.call(this,t,e,i,n,r),this.base_color_fn=a,this.divider_height=1};r.extend(k.prototype,h.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"Squish"===t?5:10},get_required_height:function(t){var e=this.prefs.summary_height;return t>1&&this.prefs.show_sample_data&&(e+=this.divider_height+t*this.get_row_height()),e},draw:function(t,e,i,n){t.save();var a,o,s,l,u,c,h,d,f,p,m,v=function(t,e){var i=t.length,n=e.length,r=0,a=1,o=null;return"-"===e?(o="deletion",a=t.length):0===t.indexOf(e)&&i>n?(o="deletion",a=i-n,r=n):0===e.indexOf(t)&&i<n&&(o="insertion",a=n-i,r=n),null!==o?{type:o,start:r,len:a}:{}},g=Math.max(1,Math.floor(n)),_=this.data.length?this.data[0][7].split(",").length:0,y="Squish"===this.mode?5:10,b=n<.1?y:"Squish"===this.mode?3:9,w=!0,k=new x(t,y,n,this.mode);1===_&&(y=b=n<t.canvas.manager.char_width_px?this.prefs.summary_height:y,k.row_height=y,w=!1),this.prefs.show_sample_data&&w&&(t.fillStyle="#F3F3F3",t.globalAlpha=1,t.fillRect(0,this.prefs.summary_height-this.divider_height,e,this.divider_height)),t.textAlign="center";for(var C=0;C<this.data.length;C++)if(a=this.data[C],o=a[1],s=a[3],l=[a[4].split(",")],u=a[7].split(","),c=a.slice(8),l=r.map(r.flatten(l),function(t){var e={type:"snp",value:t,start:0},i=v(s,t);return r.extend(e,i)}),!(o<this.view_start||o>this.view_end)){if(w)for(t.fillStyle="#999999",t.globalAlpha=1,m=0;m<l.length;m++)for(d=this.get_start_draw_pos(o+l[m].start,n),t.fillRect(d,0,g,this.prefs.summary_height),f=this.prefs.summary_height,m=0;m<l.length;m++){t.fillStyle="deletion"===l[m].type?"black":this.base_color_fn(l[m].value);var S=c/u.length,T=Math.ceil(this.prefs.summary_height*S);t.fillRect(d,f-T,g,T),f-=T}if(this.prefs.show_sample_data)for(f=w?this.prefs.summary_height+this.divider_height:0,m=0;m<u.length;m++,f+=y)if(p=u[m]?u[m].split(/\/|\|/):["0","0"],h=null,p[0]===p[1]?"."===p[0]||"0"!==p[0]&&(h=l[parseInt(p[0],10)-1],t.globalAlpha=1):(h="0"!==p[0]?p[0]:p[1],h=l[parseInt(h,10)-1],t.globalAlpha=.5),h)if(d=this.get_start_draw_pos(o+h.start,n),"snp"===h.type){var A=h.value;t.fillStyle=this.base_color_fn(A),k.draw_details?t.fillText(A,this.get_draw_pos(o,n),f+y):t.fillRect(d,f+1,g,b)}else"deletion"===h.type&&k.draw_deletion(d,f+1,h.len)}t.restore()}}),e.default={Scaler:u,LinePainter:d,LinkedFeaturePainter:m,ReadPainter:v,ArcLinkedFeaturePainter:g,DiagonalHeatmapPainter:w,VariantPainter:k}},function(t,e,i){"use strict";(function(t){Object.defineProperty(e,"__esModule",{value:!0});var n=i(3),r=function(t){return t&&t.__esModule?t:{default:t}}(n),a=i(1),o=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=o.extend,l=function(t){this.manager=null,this.name=t.name,this.index=t.index,this.tool_id=t.tool_id,this.tool_exp_name=t.tool_exp_name};s(l.prototype,{to_dict:function(){return{name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name}}});var u=function(e,i,n){return t("<a/>").attr("href","javascript:void(0);").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(n)},c=function(e){l.call(this,e),this.low="low"in e?e.low:-Number.MAX_VALUE,this.high="high"in e?e.high:Number.MAX_VALUE,this.min="min"in e?e.min:Number.MAX_VALUE,this.max="max"in e?e.max:-Number.MAX_VALUE,this.container=null,this.slider=null,this.slider_label=null;var i=this;i.parent_div=t("<div/>").addClass("filter-row slider-row");var n=t("<div/>").addClass("elt-label").appendTo(i.parent_div),r=(t("<span/>").addClass("slider-name").text(i.name+"  ").appendTo(n),t("<span/>").text(this.low+"-"+this.high)),a=t("<span/>").addClass("slider-value").appendTo(n).append("[").append(r).append("]");i.values_span=r;var o=t("<div/>").addClass("slider").appendTo(i.parent_div);i.control_element=t("<div/>").attr("id",i.name+"-filter-control").appendTo(o),i.control_element.slider({range:!0,min:this.min,max:this.max,step:this.get_slider_step(this.min,this.max),values:[this.low,this.high],slide:function(t,e){i.slide(t,e)},change:function(t,e){i.control_element.slider("option","slide").call(i.control_element,t,e)}}),i.slider=i.control_element,i.slider_label=r,function(e,i,n){e.click(function(){var e=i.text(),r=parseFloat(n.slider("option","max")),a=r<=1?4:r<=1e6?r.toString().length:6,o=!1,s=t(this).parents(".slider-row");s.addClass("input"),n.slider("option","values")&&(a=2*a+1,o=!0),i.text(""),t("<input type='text'/>").attr("size",a).attr("maxlength",a).attr("value",e).appendTo(i).focus().select().click(function(t){t.stopPropagation()}).blur(function(){t(this).remove(),i.text(e),s.removeClass("input")}).keyup(function(e){if(27===e.keyCode)t(this).trigger("blur");else if(13===e.keyCode){var i=n.slider("option","min"),r=n.slider("option","max"),a=function(t){return isNaN(t)||t>r||t<i},l=t(this).val();if(o){if(l=l.split("-"),l=[parseFloat(l[0]),parseFloat(l[1])],a(l[0])||a(l[1]))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this)}else if(l=parseFloat(l),a(l))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this);n.slider(o?"values":"value",l),s.removeClass("input")}})})}(a,r,i.control_element);var s=t("<div/>").addClass("display-controls").appendTo(i.parent_div);this.transparency_icon=u("Use filter for data transparency","layer-transparent",function(){i.manager.alpha_filter!==i?(i.manager.alpha_filter=i,i.manager.parent_div.find(".layer-transparent").removeClass("active").hide(),i.transparency_icon.addClass("active").show()):(i.manager.alpha_filter=null,i.transparency_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(s).hide(),this.height_icon=u("Use filter for data 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i=e.values;this.values_span.text(i[0]+"-"+i[1]),this.low=i[0],this.high=i[1];var n=this;setTimeout(function(){i[0]===n.low&&i[1]===n.high&&n.manager.track.request_draw({force:!0,clear_after:!0})},25)},applies_to:function(t){return t.length>this.index},_keep_val:function(t){return isNaN(t)||t>=this.low&&t<=this.high},keep:function(t){if(!this.applies_to(t))return!0;var e=t[this.index];if(e instanceof Array){for(var i=!0,n=0;n<e.length;n++)if(!this._keep_val(e[n])){i=!1;break}return i}return this._keep_val(t[this.index])},update_attrs:function(t){var e=!1;if(!this.applies_to(t))return e;var i=t[this.index];i instanceof Array||(i=[i]);for(var n=0;n<i.length;n++){var r=i[n];r<this.min&&(this.min=Math.floor(r),e=!0),r>this.max&&(this.max=Math.ceil(r),e=!0)}return e},update_ui_elt:function(){this.min<this.max?this.parent_div.show():this.parent_div.hide();var t=this.slider.slider("option","min"),e=this.slider.slider("option","max");(this.min<t||this.max>e)&&(this.slider.slider("option","min",this.min),this.slider.slider("option","max",this.max),this.slider.slider("option","step",this.get_slider_step(this.min,this.max)),this.slider.slider("option","values",[this.min,this.max]))}});var h=function(e,i){if(this.track=e,this.alpha_filter=null,this.height_filter=null,this.filters=[],this.parent_div=t("<div/>").addClass("filters").hide(),this.parent_div.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).bind("keydown",function(t){t.stopPropagation()}),i&&"filters"in i){for(var n,r=("alpha_filter"in i?i.alpha_filter:null),a=("height_filter"in i?i.height_filter:null),o=i.filters,s=0;s<o.length;s++)"number"===o[s].type?(n=new 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e.filters=i,e.alpha_filter=this.alpha_filter?this.alpha_filter.name:null,e.height_filter=this.height_filter?this.height_filter.name:null,e.visible=this.parent_div.is(":visible"),e},copy:function(t){for(var e=new h(t),i=0;i<this.filters.length;i++)e.add_filter(this.filters[i].copy());return e},add_filter:function(t){t.manager=this,this.parent_div.append(t.parent_div),this.filters.push(t)},remove_all:function(){this.filters=[],this.parent_div.children().remove()},init_filters:function(){for(var t=0;t<this.filters.length;t++){this.filters[t].update_ui_elt()}},clear_filters:function(){for(var t=0;t<this.filters.length;t++){var e=this.filters[t];e.slider.slider("option","values",[e.min,e.max])}this.alpha_filter=null,this.height_filter=null,this.parent_div.find(".icon-button").hide()},run_on_dataset:function(){for(var e,i,n=(function(t,e,i){return e in 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e=this;t.test_param.id=t.id,this.app.model.get("sustain_conditionals")&&(t.test_param.disabled=!0);var i=this._addRow(t.test_param);i.model&&i.model.set("onchange",function(i){var n=e.app.data.matchCase(t,i);for(var r in t.cases){var a=t.cases[r],o=e.$("#"+t.id+"-section-"+r),s=!1;for(var l in a.inputs)if(!a.inputs[l].hidden){s=!0;break}r==n&&s?o.fadeIn("fast"):o.hide()}e.app.trigger("change")});for(var n in t.cases){var r=new _(this.app,{inputs:t.cases[n].inputs});this._append(r.$el.addClass("ui-form-section"),t.id+"-section-"+n)}i.trigger("change")},_addRepeat:function(t){function e(e){var r=t.id+"-section-"+n++,o=new _(i.app,{inputs:e});a.add({id:r,$el:o.$el,ondel:function(){a.del(r),i.app.trigger("change")}})}for(var i=this,n=0,a=new 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m.default(this.app,{name:t.name,label:t.hide_label?"":t.label||t.name,value:t.value,text_value:t.text_value,collapsible_value:t.collapsible_value,collapsible_preview:t.collapsible_preview,help:t.help,argument:t.argument,disabled:t.disabled,color:t.color,style:t.style,backdrop:t.backdrop,hidden:t.hidden,fixed:t.fixed,field:n});return this.app.element_list[i]=r,this._append(r.$el,t.id),n},_append:function(t,e){this.$el.append(t.addClass("section-row").attr("id",e))}});e.default={View:_}}).call(e,i(2),i(0),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0}),e.View=void 0;var o=i(3),s=a(o),l=i(4),u=a(l),c=i(38),h=a(c),d=i(6),f=a(d),p=e.View=t.View.extend({initialize:function(t){this.list={},this.options=u.default.merge(t,{title:(0,s.default)("Repeat"),empty_text:"Not available.",max:null,min:null}),this.button_new=new f.default.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title,tooltip:"Add new "+this.options.title+" block",cls:"ui-button-icon ui-clear-float form-repeat-add",onclick:function(){t.onnew&&t.onnew()}}),this.setElement(n("<div/>").append(this.$list=n("<div/>")).append(n("<div/>").append(this.button_new.$el)))},size:function(){return r.size(this.list)},add:function(t){if(!t.id||this.list[t.id])return void Galaxy.emit.debug("form-repeat::add()","Duplicate or invalid repeat block id.");var e=new f.default.ButtonIcon({icon:"fa-trash-o",tooltip:(0,s.default)("Delete this repeat block"),cls:"ui-button-icon-plain form-repeat-delete",onclick:function(){t.ondel&&t.ondel()}}),i=new h.default.View({id:t.id,title:(0,s.default)("placeholder"),cls:t.cls||"ui-portlet-repeat",operations:{button_delete:e}});i.append(t.$el),i.$el.addClass("section-row").hide(),this.list[t.id]=i,this.$list.append(i.$el.fadeIn("fast")),this.options.max>0&&this.size()>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(t){if(!this.list[t])return void Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.");this.$list.find("#"+t).remove(),delete this.list[t],this.button_new.enable(),this._refresh()},delAll:function(){for(var t in this.list)this.del(t)},hideOptions:function(){this.button_new.$el.hide(),r.each(this.list,function(t){t.hideOperation("button_delete")}),r.isEmpty(this.list)&&this.$el.append(n("<div/>").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),i[this.size()>this.options.min?"showOperation":"hideOperation"]("button_delete")}}});e.default={View:p}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,i,n){Object.defineProperty(e,"__esModule",{value:!0}),e.default=t.View.extend({initialize:function(e,i){this.app=e,this.app_options=e.model?e.model.attributes:{},this.field=i&&i.field||new t.View,this.model=i&&i.model||new t.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up",always_refresh:this.app_options.always_refresh}).set(i),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var n=this.model.get("collapsible_value");this.field.collapsed=void 0!==n&&JSON.stringify(this.model.get("value"))==JSON.stringify(n),this.listenTo(this.model,"change",this.render,this),this.render();var r=this;this.$collapsible.on("click",function(){r.field.collapsed=!r.field.collapsed,e.trigger&&e.trigger("change"),r.render()}),this.field.model&&!this.model.get("always_refresh")&&this.listenTo(this.field.model,"change:value",function(){r.reset()})},backdrop:function(){this.model.set("backdrop",!0)},error:function(t){this.model.set("error_text",t)},reset:function(){!this.model.get("fixed")&&this.model.set("error_text",null)},render:function(){i(".tooltip").hide();var t=this.model.get("help",""),e=this.model.get("argument");e&&-1==t.indexOf("("+e+")")&&(t+=" ("+e+")"),this.$info.html(t),this.$el[this.model.get("hidden")?"hide":"show"](),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")||this.model.get("disabled")?"show":"hide"]().html(n.escape(this.model.get("text_value")));var r=this.model.get("error_text");if(this.$error[r?"show":"hide"](),this.$el[r?"addClass":"removeClass"]("ui-error"),this.$error_text.html(r),this.$backdrop[this.model.get("backdrop")?"show":"hide"](),this.field.collapsed||this.model.get("disabled")?this.$field.hide():this.$field.show(),this.field.model&&this.field.model.set({color:this.model.get("color"),style:this.model.get("style")}),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var a=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+a)).attr("data-original-title",this.model.get("text_"+a)).tooltip({placement:"bottom"})}},_template:function(){return i("<div/>").addClass("ui-form-element").append(i("<div/>").addClass("ui-form-error ui-error").append(i("<span/>").addClass("fa fa-arrow-down")).append(i("<span/>").addClass("ui-form-error-text"))).append(i("<div/>").addClass("ui-form-title").append(i("<div/>").addClass("ui-form-collapsible").append(i("<i/>").addClass("ui-form-collapsible-icon")).append(i("<span/>").addClass("ui-form-collapsible-text"))).append(i("<span/>").addClass("ui-form-title-text"))).append(i("<div/>").addClass("ui-form-field").append(i("<span/>").addClass("ui-form-info")).append(i("<div/>").addClass("ui-form-backdrop"))).append(i("<div/>").addClass("ui-form-preview"))}})}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(4),s=a(o),l=i(6),u=a(l),c=i(157),h=a(c),d=i(158),f=a(d),p=i(159),m=a(p),v=i(160),g=a(v),_=i(162),y=a(_);e.default=t.Model.extend({types:{text:"_fieldText",password:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider",float:"_fieldSlider",boolean:"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp",upload:"_fieldUpload",genomespacefile:"_fieldGenomeSpace"},create:function(t){var e=this.types[t.type],i="function"==typeof this[e]?this[e].call(this,t):null;return i||(i=t.options?this._fieldSelect(t):this._fieldText(t),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+t.type+").")),void 0===t.value&&(t.value=null),i.value(t.value),i},_fieldData:function(t){return new h.default.View({id:"field-"+t.id,extensions:t.extensions,optional:t.optional,multiple:t.multiple,type:t.type,flavor:t.flavor,data:t.options,onchange:t.onchange})},_fieldSelect:function(t){if(t.is_workflow)return this._fieldText(t);"data_column"==t.type&&(t.error_text="Missing columns in referenced dataset.");var e=t.data;e||(e=[],n.each(t.options,function(t){e.push({label:t[0],value:t[1]})}));var i=u.default.Select;switch(t.display){case"checkboxes":i=u.default.Checkbox;break;case"radio":i=u.default.Radio;break;case"radiobutton":i=u.default.RadioButton}return new i.View({id:"field-"+t.id,data:e,error_text:t.error_text||"No options available",readonly:t.readonly,multiple:t.multiple,optional:t.optional,onchange:t.onchange,individual:t.individual,searchable:"workflow"!==t.flavor})},_fieldDrilldown:function(t){return t.is_workflow?this._fieldText(t):new u.default.Drilldown.View({id:"field-"+t.id,data:t.options,display:t.display,optional:t.optional,onchange:t.onchange})},_fieldText:function(t){if(t.options&&t.data)if(t.area=t.multiple,s.default.isEmpty(t.value))t.value=null;else if(r.isArray(t.value)){var e="";for(var i in t.value){if(e+=String(t.value[i]),!t.multiple)break;e+="\n"}t.value=e}return new u.default.Input({id:"field-"+t.id,type:t.type,area:t.area,readonly:t.readonly,placeholder:t.placeholder,datalist:t.datalist,onchange:t.onchange})},_fieldSlider:function(t){return new u.default.Slider.View({id:"field-"+t.id,precise:"float"==t.type,is_workflow:t.is_workflow,min:t.min,max:t.max,onchange:t.onchange})},_fieldHidden:function(t){return new u.default.Hidden({id:"field-"+t.id,info:t.info})},_fieldBoolean:function(t){return new u.default.RadioButton.View({id:"field-"+t.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:t.onchange})},_fieldColor:function(t){return new y.default({id:"field-"+t.id,onchange:t.onchange})},_fieldLibrary:function(t){return new f.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldFtp:function(t){return new m.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldGenomeSpace:function(t){var e=this;return new g.default.View({id:"field-"+t.id,onchange:function(){e.app.trigger("change")}})},_fieldUpload:function(t){return new u.default.Upload({id:"field-"+t.id,onchange:t.onchange})}})}).call(e,i(2),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(4),u=a(l),c=i(6),h=a(c),d=i(82),f=a(d),p={DISABLED:"disabled",ENABLED:"enabled",LINKED:"linked"},m={data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.LINKED},{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.LINKED}],data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.DISABLED},{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collections"),multiple:!0,batch:p.DISABLED}],data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED}],workflow_data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED}],workflow_data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.DISABLED}],workflow_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED}],module_data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.ENABLED}],module_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED},{src:"hdca",icon:"fa-folder",tooltip:(0,s.default)("Multiple collections"),multiple:!0,batch:p.ENABLED}]},v=t.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new t.Model({src_labels:{hda:"dataset",hdca:"dataset collection"},pagelimit:100,statustimer:1e3}).set(e),this.setElement(n("<div/>").addClass("ui-select-content")),this.button_product=new h.default.RadioButton.View({value:"false",data:[{icon:"fa fa-chain",value:"false",tooltip:"Linked inputs will be run in matched order with other datasets e.g. use this for matching forward and reverse reads."},{icon:"fa fa-chain-broken",value:"true",tooltip:"Unlinked dataset inputs will be run against *all* other inputs."}]});var r=n("<div/>").addClass("ui-form-info").append(n("<i/>").addClass("fa fa-sitemap")).append(n("<span/>").html("This is a batch mode input field. Separate jobs will be triggered for each dataset selection."));this.$batch={linked:r.clone(),enabled:r.clone().append(n("<div/>").append(n("<div/>").addClass("ui-form-title").html("Batch options:")).append(this.button_product.$el)).append(n("<div/>").css("clear","both"))},this.$el.on("dragenter",function(t){this.lastenter=t.target,i.$el.addClass("ui-dragover")}).on("dragover",function(t){t.preventDefault()}).on("dragleave",function(t){this.lastenter===t.target&&i.$el.removeClass("ui-dragover")}).on("drop",function(t){i._handleDrop(t)}),this.history={},this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:current",this._changeCurrent,this),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:type change:optional change:multiple change:extensions",this._changeType,this),this.render(),this.on("change",function(){e.onchange&&e.onchange(i.value())})},render:function(){this._changeType(),this._changeValue(),this._changeWait()},wait:function(){this.model.set("wait",!0)},unwait:function(){this.model.set("wait",!1)},update:function(t){this.model.set("data",t)},value:function(t){void 0!==t&&this.model.set("value",t);var e=this.model.get("current");if(this.config[e]){var i=this.fields[e].value();if(null!==i&&(i=n.isArray(i)?i:[i],i.length>0)){var r=this._batch({values:[]});for(var a in i){var o=this.history[i[a]+"_"+this.config[e].src];if(!o)return Galaxy.emit.debug("ui-select-content::value()","Requested details not found for '"+i[a]+"'."),null;r.values.push(o)}return r.values.sort(function(t,e){return t.hid-e.hid}),r}}else Galaxy.emit.debug("ui-select-content::value()","Invalid value/source '"+t+"'.");return null},_changeCurrent:function(){var t=this;r.each(this.fields,function(e,i){t.model.get("current")==i?(e.$el.show(),r.each(t.$batch,function(e,n){e[t.config[i].batch==n?"show":"hide"]()}),t.button_type.value(i)):e.$el.hide()})},_changeType:function(){var t=this,e=(this.model.get("flavor")?this.model.get("flavor")+"_":"")+String(this.model.get("type"))+(this.model.get("multiple")?"_multiple":"");m[e]?this.config=m[e]:(this.config=m.data,Galaxy.emit.debug("ui-select-content::_changeType()","Invalid configuration/type id '"+e+"'."));var i=t.model.get("data"),n=u.default.textify(this.model.get("extensions")),a=this.model.get("src_labels");this.fields=[],this.button_data=[],r.each(this.config,function(e,r){t.button_data.push({value:r,icon:e.icon,tooltip:e.tooltip}),t.fields.push(new f.default.View({optional:t.model.get("optional"),multiple:e.multiple,searchable:!e.multiple||i&&i[e.src]&&i[e.src].length>t.model.get("pagelimit"),individual:!0,error_text:"No "+(n?n+" ":"")+(a[e.src]||"content")+" available.",onchange:function(){t.trigger("change")}}))}),this.button_type=new h.default.RadioButton.View({value:this.model.get("current"),data:this.button_data,onchange:function(e){t.model.set("current",e),t.trigger("change")}}),this.$el.empty();var o=0;this.fields.length>1&&(this.$el.append(this.button_type.$el),o=Math.max(0,36*this.fields.length)+"px"),r.each(this.fields,function(e){t.$el.append(e.$el.css({"margin-left":o}))}),r.each(this.$batch,function(e,i){t.$el.append(e.css({"margin-left":o}))}),this.model.set("current",0),this._changeCurrent(),this._changeData()},_changeWait:function(){var t=this;r.each(this.fields,function(e){e[t.model.get("wait")?"wait":"unwait"]()})},_changeData:function(){var t=this.model.get("data"),e=this,i={};r.each(t,function(t,n){i[n]=[],r.each(t,function(t){i[n].push({hid:t.hid,keep:t.keep,label:t.hid+": "+t.name,value:t.id,tags:t.tags}),e.history[t.id+"_"+n]=t})}),r.each(this.config,function(t,n){i[t.src]&&e.fields[n].add(i[t.src],function(t,e){return e.hid-t.hid})})},_changeValue:function(){var t=this.model.get("value");if(t&&t.values&&t.values.length>0){var e=[];r.each(t.values,function(t){e.push(t.id)});for(var i=t.values[0].src,n=t.values.length>1,a=0;a<this.config.length;a++){var o=this.fields[a],s=this.config[a];if(s.src==i&&-1!==[n,!0].indexOf(s.multiple)){this.model.set("current",a),o.value(e);break}}}else r.each(this.fields,function(t){t.value(null)})},_handleDrop:function(t){try{var e=this.model.get("data"),i=this.model.get("current"),n=this.config[i],a=this.fields[i],o=JSON.parse(t.originalEvent.dataTransfer.getData("text"))[0],s=o.id,l="dataset"==o.history_content_type?"hda":"hdca",u={id:s,src:l};if(e&&r.findWhere(e[l],u)){if(n.src==l){var c=a.value();c&&n.multiple?-1==c.indexOf(s)&&c.push(s):c=s,a.value(c)}else this.model.set("value",{values:[u]}),this.model.trigger("change:value");this.trigger("change"),this._handleDropStatus("success")}else this._handleDropStatus("danger")}catch(t){this._handleDropStatus("danger")}t.preventDefault()},_handleDropStatus:function(t){var e=this;this.$el.removeClass("ui-dragover").addClass("ui-dragover-"+t),setTimeout(function(){e.$el.removeClass("ui-dragover-"+t)},this.model.get("statustimer"))},_batch:function(t){t.batch=!1;var e=this.model.get("current"),i=this.config[e];if("hdca"==i.src&&!i.multiple){var n=this.history[this.fields[e].value()+"_hdca"];n&&n.map_over_type&&(t.batch=!0)}return i.batch!=p.LINKED&&i.batch!=p.ENABLED||(t.batch=!0,i.batch==p.ENABLED&&"true"===this.button_product.value()&&(t.product=!0)),t}});e.default={View:v}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t){function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(4),a=(n(r),i(6)),o=n(a),s=i(88),l=(n(s),i(89)),u=n(l),c=t.Collection.extend({url:Galaxy.root+"api/libraries?deleted=false"}),h=t.Collection.extend({initialize:function(){var e=this;this.config=new t.Model({library_id:null}),this.config.on("change",function(){e.fetch({reset:!0})})},url:function(){return Galaxy.root+"api/libraries/"+this.config.get("library_id")+"/contents"}}),d=t.View.extend({initialize:function(t){var e=this;this.libraries=new c,this.datasets=new h,this.options=t,this.library_select=new o.default.Select.View({onchange:function(t){e.datasets.config.set("library_id",t)}}),this.dataset_list=new u.default.View({name:"dataset",optional:t.optional,multiple:t.multiple,onchange:function(){e.trigger("change")}}),this.libraries.on("reset",function(){var t=[];e.libraries.each(function(e){t.push({value:e.id,label:e.get("name")})}),e.library_select.update(t)}),this.datasets.on("reset",function(){var t=[];null!==e.library_select.text()&&e.datasets.each(function(e){"file"===e.get("type")&&t.push({value:e.id,label:e.get("name")})}),e.dataset_list.update(t)}),this.on("change",function(){t.onchange&&t.onchange(e.value())}),this.setElement(this._template()),this.$(".library-select").append(this.library_select.$el),this.$el.append(this.dataset_list.$el),this.libraries.fetch({reset:!0,success:function(){e.library_select.trigger("change"),void 0!==e.options.value&&e.value(e.options.value)}})},value:function(t){return this.dataset_list.value(t)},_template:function(){return'<div class="ui-select-library"><div class="library ui-margin-bottom"><span class="library-title">Select Library</span><span class="library-select"/></div></div>'}});e.default={View:d}}).call(e,i(2))},function(t,e,i){"use strict";(function(t){function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(4),a=n(r),o=i(89),s=n(o),l=t.View.extend({initialize:function(t){var e=this;this.ftpfile_list=new s.default.View({name:"file",optional:t.optional,multiple:t.multiple,onchange:function(){t.onchange&&t.onchange(e.value())}}),this.setElement(this.ftpfile_list.$el),a.default.get({url:Galaxy.root+"api/remote_files",success:function(t){var i=[];for(var n in t)i.push({value:t[n].path,label:t[n].path});e.ftpfile_list.update(i)}})},value:function(t){return this.ftpfile_list.value(t)}});e.default={View:l}}).call(e,i(2))},function(t,e,i){"use strict";(function(t){function n(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var r=i(3),a=n(r),o=i(4),s=(n(o),i(6)),l=n(s),u=i(161),c=n(u),h=t.View.extend({initialize:function(t){var e=this;this.browse_button=new l.default.ButtonIcon({title:(0,a.default)("Browse"),icon:"fa fa-sign-in",tooltip:(0,a.default)("Browse GenomeSpace"),onclick:function(){e.browseGenomeSpace()}}),this.filename_textbox=new l.default.Input,this.token_textbox=new l.default.Input({type:"password"}),this.setElement(this._template(t)),this.$(".ui-gs-browse-button").append(this.browse_button.$el),this.$(".ui-gs-filename-textbox").append(this.filename_textbox.$el),this.$(".ui-gs-token-textbox").append(this.token_textbox.$el)},browseGenomeSpace:function(t){var e=this;c.default.openFileBrowser({successCallback:function(t){e.value(t.destination+"^"+t.token)}})},_template:function(t){return'<div class="ui-gs-select-file"><div class="ui-gs-browse-field"><span class="ui-gs-browse-button" /><span class="ui-gs-filename-textbox" /></div><div class="ui-gs-token-field"><span class=ui-gs-label"><div class="ui-gs-token-label">Token</div></span><span class="ui-gs-token-textbox" /></div></div>'},value:function(t){if(void 0===t)return this._getValue();this._setValue(t)},_getValue:function(){return 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n,r,a,o;this.userOptions=i=i||{},this.tag=e,this.tagValCache={},r=t.fn.sparkline.defaults,a=r.common,this.tagOptionsPrefix=i.enableTagOptions&&(i.tagOptionsPrefix||a.tagOptionsPrefix),o=this.getTagSetting("type"),n=o===P?r[i.type||a.type]:r[o],this.mergedOptions=t.extend({},a,n,i)},getTagSetting:function(t){var e,i,n,r,a=this.tagOptionsPrefix;if(!1===a||void 0===a)return P;if(this.tagValCache.hasOwnProperty(t))e=this.tagValCache.key;else{if(void 0===(e=this.tag.getAttribute(a+t))||null===e)e=P;else if("["===e.substr(0,1))for(e=e.substr(1,e.length-2).split(","),i=e.length;i--;)e[i]=l(e[i].replace(/(^\s*)|(\s*$)/g,""));else if("{"===e.substr(0,1))for(n=e.substr(1,e.length-2).split(","),e={},i=n.length;i--;)r=n[i].split(":",2),e[r[0].replace(/(^\s*)|(\s*$)/g,"")]=l(r[1].replace(/(^\s*)|(\s*$)/g,""));else e=l(e);this.tagValCache.key=e}return e},get:function(t,e){var i,n=this.getTagSetting(t);return n!==P?n:void 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0,!0)},renderHighlight:function(){this.changeHighlight(!0)},removeHighlight:function(){this.changeHighlight(!1)},changeHighlight:function(t){},getCurrentRegionTooltip:function(){var e,i,r,a,o,s,l,u,c,h,d,f,p,m,g=this.options,v="",_=[];if(void 0===this.currentRegion)return"";if(e=this.getCurrentRegionFields(),d=g.get("tooltipFormatter"))return d(this,g,e);if(g.get("tooltipChartTitle")&&(v+='<div class="jqs jqstitle">'+g.get("tooltipChartTitle")+"</div>\n"),!(i=this.options.get("tooltipFormat")))return"";if(t.isArray(i)||(i=[i]),t.isArray(e)||(e=[e]),l=this.options.get("tooltipFormatFieldlist"),u=this.options.get("tooltipFormatFieldlistKey"),l&&u){for(c=[],s=e.length;s--;)h=e[s][u],-1!=(m=t.inArray(h,l))&&(c[m]=e[s]);e=c}for(r=i.length,p=e.length,s=0;s<r;s++)for(f=i[s],"string"==typeof f&&(f=new n(f)),a=f.fclass||"jqsfield",m=0;m<p;m++)e[m].isNull&&g.get("tooltipSkipNull")||(t.extend(e[m],{prefix:g.get("tooltipPrefix"),suffix:g.get("tooltipSuffix")}),o=f.render(e[m],g.get("tooltipValueLookups"),g),_.push('<div class="'+a+'">'+o+"</div>"));return _.length?v+_.join("\n"):""},getCurrentRegionFields:function(){},calcHighlightColor:function(t,e){var i,n,a,o,l=e.get("highlightColor"),u=e.get("highlightLighten");if(l)return l;if(u&&(i=/^#([0-9a-f])([0-9a-f])([0-9a-f])$/i.exec(t)||/^#([0-9a-f]{2})([0-9a-f]{2})([0-9a-f]{2})$/i.exec(t))){for(a=[],n=4===t.length?16:1,o=0;o<3;o++)a[o]=r(s.round(parseInt(i[o+1],16)*n*u),0,255);return"rgb("+a.join(",")+")"}return t}}),y={changeHighlight:function(e){var i,n=this.currentRegion,r=this.target,a=this.regionShapes[n];a&&(i=this.renderRegion(n,e),t.isArray(i)||t.isArray(a)?(r.replaceWithShapes(a,i),this.regionShapes[n]=t.map(i,function(t){return t.id})):(r.replaceWithShape(a,i),this.regionShapes[n]=i.id))},render:function(){var e,i,n,r,a=this.values,o=this.target,s=this.regionShapes;if(this.cls._super.render.call(this)){for(n=a.length;n--;)if(e=this.renderRegion(n))if(t.isArray(e)){for(i=[],r=e.length;r--;)e[r].append(),i.push(e[r].id);s[n]=i}else e.append(),s[n]=e.id;else s[n]=null;o.render()}}},t.fn.sparkline.line=b=i(t.fn.sparkline._base,{type:"line",init:function(t,e,i,n,r){b._super.init.call(this,t,e,i,n,r),this.vertices=[],this.regionMap=[],this.xvalues=[],this.yvalues=[],this.yminmax=[],this.hightlightSpotId=null,this.lastShapeId=null,this.initTarget()},getRegion:function(t,e,i){var n,r=this.regionMap;for(n=r.length;n--;)if(null!==r[n]&&e>=r[n][0]&&e<=r[n][1])return r[n][2]},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:null===this.yvalues[t],x:this.xvalues[t],y:this.yvalues[t],color:this.options.get("lineColor"),fillColor:this.options.get("fillColor"),offset:t}},renderHighlight:function(){var t,e,i=this.currentRegion,n=this.target,r=this.vertices[i],a=this.options,o=a.get("spotRadius"),s=a.get("highlightSpotColor"),l=a.get("highlightLineColor");r&&(o&&s&&(t=n.drawCircle(r[0],r[1],o,void 0,s),this.highlightSpotId=t.id,n.insertAfterShape(this.lastShapeId,t)),l&&(e=n.drawLine(r[0],this.canvasTop,r[0],this.canvasTop+this.canvasHeight,l),this.highlightLineId=e.id,n.insertAfterShape(this.lastShapeId,e)))},removeHighlight:function(){var t=this.target;this.highlightSpotId&&(t.removeShapeId(this.highlightSpotId),this.highlightSpotId=null),this.highlightLineId&&(t.removeShapeId(this.highlightLineId),this.highlightLineId=null)},scanValues:function(){var t,e,i,n,r,a=this.values,o=a.length,l=this.xvalues,u=this.yvalues,c=this.yminmax;for(t=0;t<o;t++)e=a[t],i="string"==typeof a[t],n="object"==typeof a[t]&&a[t]instanceof Array,r=i&&a[t].split(":"),i&&2===r.length?(l.push(Number(r[0])),u.push(Number(r[1])),c.push(Number(r[1]))):n?(l.push(e[0]),u.push(e[1]),c.push(e[1])):(l.push(t),null===a[t]||"null"===a[t]?u.push(null):(u.push(Number(e)),c.push(Number(e))));this.options.get("xvalues")&&(l=this.options.get("xvalues")),this.maxy=this.maxyorg=s.max.apply(s,c),this.miny=this.minyorg=s.min.apply(s,c),this.maxx=s.max.apply(s,l),this.minx=s.min.apply(s,l),this.xvalues=l,this.yvalues=u,this.yminmax=c},processRangeOptions:function(){var t=this.options,e=t.get("normalRangeMin"),i=t.get("normalRangeMax");void 0!==e&&(e<this.miny&&(this.miny=e),i>this.maxy&&(this.maxy=i)),void 0!==t.get("chartRangeMin")&&(t.get("chartRangeClip")||t.get("chartRangeMin")<this.miny)&&(this.miny=t.get("chartRangeMin")),void 0!==t.get("chartRangeMax")&&(t.get("chartRangeClip")||t.get("chartRangeMax")>this.maxy)&&(this.maxy=t.get("chartRangeMax")),void 0!==t.get("chartRangeMinX")&&(t.get("chartRangeClipX")||t.get("chartRangeMinX")<this.minx)&&(this.minx=t.get("chartRangeMinX")),void 0!==t.get("chartRangeMaxX")&&(t.get("chartRangeClipX")||t.get("chartRangeMaxX")>this.maxx)&&(this.maxx=t.get("chartRangeMaxX"))},drawNormalRange:function(t,e,i,n,r){var a=this.options.get("normalRangeMin"),o=this.options.get("normalRangeMax"),l=e+s.round(i-i*((o-this.miny)/r)),u=s.round(i*(o-a)/r);this.target.drawRect(t,l,n,u,void 0,this.options.get("normalRangeColor")).append()},render:function(){var e,i,n,r,a,o,l,u,c,h,d,f,p,m,v,_,y,w,x,C,k,S,T,A,M,E=this.options,O=this.target,$=this.canvasWidth,D=this.canvasHeight,j=this.vertices,P=E.get("spotRadius"),R=this.regionMap;if(b._super.render.call(this)&&(this.scanValues(),this.processRangeOptions(),T=this.xvalues,A=this.yvalues,this.yminmax.length&&!(this.yvalues.length<2))){for(r=a=0,e=this.maxx-this.minx==0?1:this.maxx-this.minx,i=this.maxy-this.miny==0?1:this.maxy-this.miny,n=this.yvalues.length-1,P&&($<4*P||D<4*P)&&(P=0),P&&(k=E.get("highlightSpotColor")&&!E.get("disableInteraction"),(k||E.get("minSpotColor")||E.get("spotColor")&&A[n]===this.miny)&&(D-=s.ceil(P)),(k||E.get("maxSpotColor")||E.get("spotColor")&&A[n]===this.maxy)&&(D-=s.ceil(P),r+=s.ceil(P)),(k||(E.get("minSpotColor")||E.get("maxSpotColor"))&&(A[0]===this.miny||A[0]===this.maxy))&&(a+=s.ceil(P),$-=s.ceil(P)),(k||E.get("spotColor")||E.get("minSpotColor")||E.get("maxSpotColor")&&(A[n]===this.miny||A[n]===this.maxy))&&($-=s.ceil(P))),D--,void 0===E.get("normalRangeMin")||E.get("drawNormalOnTop")||this.drawNormalRange(a,r,D,$,i),l=[],u=[l],m=v=null,_=A.length,M=0;M<_;M++)c=T[M],d=T[M+1],h=A[M],f=a+s.round((c-this.minx)*($/e)),p=M<_-1?a+s.round((d-this.minx)*($/e)):$,v=f+(p-f)/2,R[M]=[m||0,v,M],m=v,null===h?M&&(null!==A[M-1]&&(l=[],u.push(l)),j.push(null)):(h<this.miny&&(h=this.miny),h>this.maxy&&(h=this.maxy),l.length||l.push([f,r+D]),o=[f,r+s.round(D-D*((h-this.miny)/i))],l.push(o),j.push(o));for(y=[],w=[],x=u.length,M=0;M<x;M++)l=u[M],l.length&&(E.get("fillColor")&&(l.push([l[l.length-1][0],r+D]),w.push(l.slice(0)),l.pop()),l.length>2&&(l[0]=[l[0][0],l[1][1]]),y.push(l));for(x=w.length,M=0;M<x;M++)O.drawShape(w[M],E.get("fillColor"),E.get("fillColor")).append();for(void 0!==E.get("normalRangeMin")&&E.get("drawNormalOnTop")&&this.drawNormalRange(a,r,D,$,i),x=y.length,M=0;M<x;M++)O.drawShape(y[M],E.get("lineColor"),void 0,E.get("lineWidth")).append();if(P&&E.get("valueSpots"))for(C=E.get("valueSpots"),void 0===C.get&&(C=new g(C)),M=0;M<_;M++)(S=C.get(A[M]))&&O.drawCircle(a+s.round((T[M]-this.minx)*($/e)),r+s.round(D-D*((A[M]-this.miny)/i)),P,void 0,S).append();P&&E.get("spotColor")&&null!==A[n]&&O.drawCircle(a+s.round((T[T.length-1]-this.minx)*($/e)),r+s.round(D-D*((A[n]-this.miny)/i)),P,void 0,E.get("spotColor")).append(),this.maxy!==this.minyorg&&(P&&E.get("minSpotColor")&&(c=T[t.inArray(this.minyorg,A)],O.drawCircle(a+s.round((c-this.minx)*($/e)),r+s.round(D-D*((this.minyorg-this.miny)/i)),P,void 0,E.get("minSpotColor")).append()),P&&E.get("maxSpotColor")&&(c=T[t.inArray(this.maxyorg,A)],O.drawCircle(a+s.round((c-this.minx)*($/e)),r+s.round(D-D*((this.maxyorg-this.miny)/i)),P,void 0,E.get("maxSpotColor")).append())),this.lastShapeId=O.getLastShapeId(),this.canvasTop=r,O.render()}}}),t.fn.sparkline.bar=w=i(t.fn.sparkline._base,y,{type:"bar",init:function(e,i,n,a,o){var h,d,f,p,m,v,_,y,b,x,C,k,S,T,A,M,E,O,$,D,j,P,R=parseInt(n.get("barWidth"),10),I=parseInt(n.get("barSpacing"),10),N=n.get("chartRangeMin"),L=n.get("chartRangeMax"),z=n.get("chartRangeClip"),H=1/0,q=-1/0;for(w._super.init.call(this,e,i,n,a,o),v=0,_=i.length;v<_;v++)D=i[v],((h="string"==typeof D&&D.indexOf(":")>-1)||t.isArray(D))&&(A=!0,h&&(D=i[v]=u(D.split(":"))),D=c(D,null),d=s.min.apply(s,D),f=s.max.apply(s,D),d<H&&(H=d),f>q&&(q=f));this.stacked=A,this.regionShapes={},this.barWidth=R,this.barSpacing=I,this.totalBarWidth=R+I,this.width=a=i.length*R+(i.length-1)*I,this.initTarget(),z&&(S=void 0===N?-1/0:N,T=void 0===L?1/0:L),m=[],p=A?[]:m;var F=[],B=[];for(v=0,_=i.length;v<_;v++)if(A)for(M=i[v],i[v]=$=[],F[v]=0,p[v]=B[v]=0,E=0,O=M.length;E<O;E++)null!==(D=$[E]=z?r(M[E],S,T):M[E])&&(D>0&&(F[v]+=D),H<0&&q>0?D<0?B[v]+=s.abs(D):p[v]+=D:p[v]+=s.abs(D-(D<0?q:H)),m.push(D));else D=z?r(i[v],S,T):i[v],null!==(D=i[v]=l(D))&&m.push(D);this.max=k=s.max.apply(s,m),this.min=C=s.min.apply(s,m),this.stackMax=q=A?s.max.apply(s,F):k,this.stackMin=H=A?s.min.apply(s,m):C,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<C)&&(C=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>k)&&(k=n.get("chartRangeMax")),this.zeroAxis=b=n.get("zeroAxis",!0),x=C<=0&&k>=0&&b?0:0==b?C:C>0?C:k,this.xaxisOffset=x,y=A?s.max.apply(s,p)+s.max.apply(s,B):k-C,this.canvasHeightEf=b&&C<0?this.canvasHeight-2:this.canvasHeight-1,C<x?(P=A&&k>=0?q:k,(j=(P-x)/y*this.canvasHeight)!==s.ceil(j)&&(this.canvasHeightEf-=2,j=s.ceil(j))):j=this.canvasHeight,this.yoffset=j,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new g(this.colorMapByValue))),this.range=y},getRegion:function(t,e,i){var n=s.floor(e/this.totalBarWidth);return n<0||n>=this.values.length?void 0:n},getCurrentRegionFields:function(){var t,e,i=this.currentRegion,n=p(this.values[i]),r=[];for(e=n.length;e--;)t=n[e],r.push({isNull:null===t,value:t,color:this.calcColor(e,t,i),offset:i});return r},calcColor:function(e,i,n){var r,a,o=this.colorMapByIndex,s=this.colorMapByValue,l=this.options;return r=this.stacked?l.get("stackedBarColor"):i<0?l.get("negBarColor"):l.get("barColor"),0===i&&void 0!==l.get("zeroColor")&&(r=l.get("zeroColor")),s&&(a=s.get(i))?r=a:o&&o.length>n&&(r=o[n]),t.isArray(r)?r[e%r.length]:r},renderRegion:function(e,i){var n,r,a,o,l,u,c,h,f,p,m=this.values[e],g=this.options,v=this.xaxisOffset,_=[],y=this.range,b=this.stacked,w=this.target,x=e*this.totalBarWidth,C=this.canvasHeightEf,k=this.yoffset;if(m=t.isArray(m)?m:[m],c=m.length,h=m[0],o=d(null,m),p=d(v,m,!0),o)return g.get("nullColor")?(a=i?g.get("nullColor"):this.calcHighlightColor(g.get("nullColor"),g),n=k>0?k-1:k,w.drawRect(x,n,this.barWidth-1,0,a,a)):void 0;for(l=k,u=0;u<c;u++){if(h=m[u],b&&h===v){if(!p||f)continue;f=!0}r=y>0?s.floor(C*(s.abs(h-v)/y))+1:1,h<v||h===v&&0===k?(n=l,l+=r):(n=k-r,k-=r),a=this.calcColor(u,h,e),i&&(a=this.calcHighlightColor(a,g)),_.push(w.drawRect(x,n,this.barWidth-1,r-1,a,a))}return 1===_.length?_[0]:_}}),t.fn.sparkline.tristate=x=i(t.fn.sparkline._base,y,{type:"tristate",init:function(e,i,n,r,a){var o=parseInt(n.get("barWidth"),10),s=parseInt(n.get("barSpacing"),10);x._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.barWidth=o,this.barSpacing=s,this.totalBarWidth=o+s,this.values=t.map(i,Number),this.width=r=i.length*o+(i.length-1)*s,t.isArray(n.get("colorMap"))?(this.colorMapByIndex=n.get("colorMap"),this.colorMapByValue=null):(this.colorMapByIndex=null,this.colorMapByValue=n.get("colorMap"),this.colorMapByValue&&void 0===this.colorMapByValue.get&&(this.colorMapByValue=new g(this.colorMapByValue))),this.initTarget()},getRegion:function(t,e,i){return s.floor(e/this.totalBarWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],color:this.calcColor(this.values[t],t),offset:t}},calcColor:function(t,e){var i,n=this.values,r=this.options,a=this.colorMapByIndex,o=this.colorMapByValue;return o&&(i=o.get(t))?i:a&&a.length>e?a[e]:n[e]<0?r.get("negBarColor"):n[e]>0?r.get("posBarColor"):r.get("zeroBarColor")},renderRegion:function(t,e){var i,n,r,a,o,l,u=this.values,c=this.options,h=this.target;if(i=h.pixelHeight,r=s.round(i/2),a=t*this.totalBarWidth,u[t]<0?(o=r,n=r-1):u[t]>0?(o=0,n=r-1):(o=r-1,n=2),null!==(l=this.calcColor(u[t],t)))return e&&(l=this.calcHighlightColor(l,c)),h.drawRect(a,o,this.barWidth-1,n-1,l,l)}}),t.fn.sparkline.discrete=C=i(t.fn.sparkline._base,y,{type:"discrete",init:function(e,i,n,r,a){C._super.init.call(this,e,i,n,r,a),this.regionShapes={},this.values=i=t.map(i,Number),this.min=s.min.apply(s,i),this.max=s.max.apply(s,i),this.range=this.max-this.min,this.width=r="auto"===n.get("width")?2*i.length:this.width,this.interval=s.floor(r/i.length),this.itemWidth=r/i.length,void 0!==n.get("chartRangeMin")&&(n.get("chartRangeClip")||n.get("chartRangeMin")<this.min)&&(this.min=n.get("chartRangeMin")),void 0!==n.get("chartRangeMax")&&(n.get("chartRangeClip")||n.get("chartRangeMax")>this.max)&&(this.max=n.get("chartRangeMax")),this.initTarget(),this.target&&(this.lineHeight="auto"===n.get("lineHeight")?s.round(.3*this.canvasHeight):n.get("lineHeight"))},getRegion:function(t,e,i){return s.floor(e/this.itemWidth)},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],offset:t}},renderRegion:function(t,e){var i,n,a,o,l=this.values,u=this.options,c=this.min,h=this.max,d=this.range,f=this.interval,p=this.target,m=this.canvasHeight,g=this.lineHeight,v=m-g;return n=r(l[t],c,h),o=t*f,i=s.round(v-v*((n-c)/d)),a=u.get("thresholdColor")&&n<u.get("thresholdValue")?u.get("thresholdColor"):u.get("lineColor"),e&&(a=this.calcHighlightColor(a,u)),p.drawLine(o,i,o,i+g,a)}}),t.fn.sparkline.bullet=k=i(t.fn.sparkline._base,{type:"bullet",init:function(t,e,i,n,r){var a,o,l;k._super.init.call(this,t,e,i,n,r),this.values=e=u(e),l=e.slice(),l[0]=null===l[0]?l[2]:l[0],l[1]=null===e[1]?l[2]:l[1],a=s.min.apply(s,e),o=s.max.apply(s,e),a=void 0===i.get("base")?a<0?a:0:i.get("base"),this.min=a,this.max=o,this.range=o-a,this.shapes={},this.valueShapes={},this.regiondata={},this.width=n="auto"===i.get("width")?"4.0em":n,this.target=this.$el.simpledraw(n,r,i.get("composite")),e.length||(this.disabled=!0),this.initTarget()},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{fieldkey:t.substr(0,1),value:this.values[t.substr(1)],region:t}},changeHighlight:function(t){var e,i=this.currentRegion,n=this.valueShapes[i];switch(delete this.shapes[n],i.substr(0,1)){case"r":e=this.renderRange(i.substr(1),t);break;case"p":e=this.renderPerformance(t);break;case"t":e=this.renderTarget(t)}this.valueShapes[i]=e.id,this.shapes[e.id]=i,this.target.replaceWithShape(n,e)},renderRange:function(t,e){var i=this.values[t],n=s.round(this.canvasWidth*((i-this.min)/this.range)),r=this.options.get("rangeColors")[t-2];return e&&(r=this.calcHighlightColor(r,this.options)),this.target.drawRect(0,0,n-1,this.canvasHeight-1,r,r)},renderPerformance:function(t){var e=this.values[1],i=s.round(this.canvasWidth*((e-this.min)/this.range)),n=this.options.get("performanceColor");return t&&(n=this.calcHighlightColor(n,this.options)),this.target.drawRect(0,s.round(.3*this.canvasHeight),i-1,s.round(.4*this.canvasHeight)-1,n,n)},renderTarget:function(t){var e=this.values[0],i=s.round(this.canvasWidth*((e-this.min)/this.range)-this.options.get("targetWidth")/2),n=s.round(.1*this.canvasHeight),r=this.canvasHeight-2*n,a=this.options.get("targetColor");return t&&(a=this.calcHighlightColor(a,this.options)),this.target.drawRect(i,n,this.options.get("targetWidth")-1,r-1,a,a)},render:function(){var t,e,i=this.values.length,n=this.target;if(k._super.render.call(this)){for(t=2;t<i;t++)e=this.renderRange(t).append(),this.shapes[e.id]="r"+t,this.valueShapes["r"+t]=e.id;null!==this.values[1]&&(e=this.renderPerformance().append(),this.shapes[e.id]="p1",this.valueShapes.p1=e.id),null!==this.values[0]&&(e=this.renderTarget().append(),this.shapes[e.id]="t0",this.valueShapes.t0=e.id),n.render()}}}),t.fn.sparkline.pie=S=i(t.fn.sparkline._base,{type:"pie",init:function(e,i,n,r,a){var o,l=0;if(S._super.init.call(this,e,i,n,r,a),this.shapes={},this.valueShapes={},this.values=i=t.map(i,Number),"auto"===n.get("width")&&(this.width=this.height),i.length>0)for(o=i.length;o--;)l+=i[o];this.total=l,this.initTarget(),this.radius=s.floor(s.min(this.canvasWidth,this.canvasHeight)/2)},getRegion:function(t,e,i){var n=this.target.getShapeAt(t,e,i);return void 0!==n&&void 0!==this.shapes[n]?this.shapes[n]:void 0},getCurrentRegionFields:function(){var t=this.currentRegion;return{isNull:void 0===this.values[t],value:this.values[t],percent:this.values[t]/this.total*100,color:this.options.get("sliceColors")[t%this.options.get("sliceColors").length],offset:t}},changeHighlight:function(t){var e=this.currentRegion,i=this.renderSlice(e,t),n=this.valueShapes[e];delete this.shapes[n],this.target.replaceWithShape(n,i),this.valueShapes[e]=i.id,this.shapes[i.id]=e},renderSlice:function(t,e){var i,n,r,a,o,l=this.target,u=this.options,c=this.radius,h=u.get("borderWidth"),d=u.get("offset"),f=2*s.PI,p=this.values,m=this.total,g=d?2*s.PI*(d/360):0;for(a=p.length,r=0;r<a;r++){if(i=g,n=g,m>0&&(n=g+f*(p[r]/m)),t===r)return o=u.get("sliceColors")[r%u.get("sliceColors").length],e&&(o=this.calcHighlightColor(o,u)),l.drawPieSlice(c,c,c-h,i,n,void 0,o);g=n}},render:function(){var t,e,i=this.target,n=this.values,r=this.options,a=this.radius,o=r.get("borderWidth");if(S._super.render.call(this)){for(o&&i.drawCircle(a,a,s.floor(a-o/2),r.get("borderColor"),void 0,o).append(),e=n.length;e--;)n[e]&&(t=this.renderSlice(e).append(),this.valueShapes[e]=t.id,this.shapes[t.id]=e);i.render()}}}),t.fn.sparkline.box=T=i(t.fn.sparkline._base,{type:"box",init:function(e,i,n,r,a){T._super.init.call(this,e,i,n,r,a),this.values=t.map(i,Number),this.width="auto"===n.get("width")?"4.0em":r,this.initTarget(),this.values.length||(this.disabled=1)},getRegion:function(){return 1},getCurrentRegionFields:function(){var t=[{field:"lq",value:this.quartiles[0]},{field:"med",value:this.quartiles[1]},{field:"uq",value:this.quartiles[2]}];return void 0!==this.loutlier&&t.push({field:"lo",value:this.loutlier}),void 0!==this.routlier&&t.push({field:"ro",value:this.routlier}),void 0!==this.lwhisker&&t.push({field:"lw",value:this.lwhisker}),void 0!==this.rwhisker&&t.push({field:"rw",value:this.rwhisker}),t},render:function(){var t,e,i,n,r,o,l,u,c,h,d,f=this.target,p=this.values,m=p.length,g=this.options,v=this.canvasWidth,_=this.canvasHeight,y=void 0===g.get("chartRangeMin")?s.min.apply(s,p):g.get("chartRangeMin"),b=void 0===g.get("chartRangeMax")?s.max.apply(s,p):g.get("chartRangeMax"),w=0;if(T._super.render.call(this)){if(g.get("raw"))g.get("showOutliers")&&p.length>5?(e=p[0],t=p[1],n=p[2],r=p[3],o=p[4],l=p[5],u=p[6]):(t=p[0],n=p[1],r=p[2],o=p[3],l=p[4]);else if(p.sort(function(t,e){return t-e}),n=a(p,1),r=a(p,2),o=a(p,3),i=o-n,g.get("showOutliers")){for(t=l=void 0,c=0;c<m;c++)void 0===t&&p[c]>n-i*g.get("outlierIQR")&&(t=p[c]),p[c]<o+i*g.get("outlierIQR")&&(l=p[c]);e=p[0],u=p[m-1]}else t=p[0],l=p[m-1];this.quartiles=[n,r,o],this.lwhisker=t,this.rwhisker=l,this.loutlier=e,this.routlier=u,d=v/(b-y+1),g.get("showOutliers")&&(w=s.ceil(g.get("spotRadius")),v-=2*s.ceil(g.get("spotRadius")),d=v/(b-y+1),e<t&&f.drawCircle((e-y)*d+w,_/2,g.get("spotRadius"),g.get("outlierLineColor"),g.get("outlierFillColor")).append(),u>l&&f.drawCircle((u-y)*d+w,_/2,g.get("spotRadius"),g.get("outlierLineColor"),g.get("outlierFillColor")).append()),f.drawRect(s.round((n-y)*d+w),s.round(.1*_),s.round((o-n)*d),s.round(.8*_),g.get("boxLineColor"),g.get("boxFillColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/2),s.round((n-y)*d+w),s.round(_/2),g.get("lineColor")).append(),f.drawLine(s.round((t-y)*d+w),s.round(_/4),s.round((t-y)*d+w),s.round(_-_/4),g.get("whiskerColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/2),s.round((o-y)*d+w),s.round(_/2),g.get("lineColor")).append(),f.drawLine(s.round((l-y)*d+w),s.round(_/4),s.round((l-y)*d+w),s.round(_-_/4),g.get("whiskerColor")).append(),f.drawLine(s.round((r-y)*d+w),s.round(.1*_),s.round((r-y)*d+w),s.round(.9*_),g.get("medianColor")).append(),g.get("target")&&(h=s.ceil(g.get("spotRadius")),f.drawLine(s.round((g.get("target")-y)*d+w),s.round(_/2-h),s.round((g.get("target")-y)*d+w),s.round(_/2+h),g.get("targetColor")).append(),f.drawLine(s.round((g.get("target")-y)*d+w-h),s.round(_/2),s.round((g.get("target")-y)*d+w+h),s.round(_/2),g.get("targetColor")).append()),f.render()}}}),E=i({init:function(t,e,i,n){this.target=t,this.id=e,this.type=i,this.args=n},append:function(){return this.target.appendShape(this),this}}),O=i({_pxregex:/(\d+)(px)?\s*$/i,init:function(e,i,n){e&&(this.width=e,this.height=i,this.target=n,this.lastShapeId=null,n[0]&&(n=n[0]),t.data(n,"_jqs_vcanvas",this))},drawLine:function(t,e,i,n,r,a){return this.drawShape([[t,e],[i,n]],r,a)},drawShape:function(t,e,i,n){return this._genShape("Shape",[t,e,i,n])},drawCircle:function(t,e,i,n,r,a){return this._genShape("Circle",[t,e,i,n,r,a])},drawPieSlice:function(t,e,i,n,r,a,o){return this._genShape("PieSlice",[t,e,i,n,r,a,o])},drawRect:function(t,e,i,n,r,a){return this._genShape("Rect",[t,e,i,n,r,a])},getElement:function(){return this.canvas},getLastShapeId:function(){return this.lastShapeId},reset:function(){alert("reset not implemented")},_insert:function(e,i){t(i).html(e)},_calculatePixelDims:function(e,i,n){var r;r=this._pxregex.exec(i),this.pixelHeight=r?r[1]:t(n).height(),r=this._pxregex.exec(e),this.pixelWidth=r?r[1]:t(n).width()},_genShape:function(t,e){var i=R++;return e.unshift(i),new E(this,i,t,e)},appendShape:function(t){alert("appendShape not implemented")},replaceWithShape:function(t,e){alert("replaceWithShape not implemented")},insertAfterShape:function(t,e){alert("insertAfterShape not implemented")},removeShapeId:function(t){alert("removeShapeId not implemented")},getShapeAt:function(t,e,i){alert("getShapeAt not implemented")},render:function(){alert("render not implemented")}}),$=i(O,{init:function(e,i,n,r){$._super.init.call(this,e,i,n),this.canvas=o.createElement("canvas"),n[0]&&(n=n[0]),t.data(n,"_jqs_vcanvas",this),t(this.canvas).css({display:"inline-block",width:e,height:i,verticalAlign:"top"}),this._insert(this.canvas,n),this._calculatePixelDims(e,i,this.canvas),this.canvas.width=this.pixelWidth,this.canvas.height=this.pixelHeight,this.interact=r,this.shapes={},this.shapeseq=[],this.currentTargetShapeId=void 0,t(this.canvas).css({width:this.pixelWidth,height:this.pixelHeight})},_getContext:function(t,e,i){var n=this.canvas.getContext("2d");return void 0!==t&&(n.strokeStyle=t),n.lineWidth=void 0===i?1:i,void 0!==e&&(n.fillStyle=e),n},reset:function(){this._getContext().clearRect(0,0,this.pixelWidth,this.pixelHeight),this.shapes={},this.shapeseq=[],this.currentTargetShapeId=void 0},_drawShape:function(t,e,i,n,r){var a,o,s=this._getContext(i,n,r);for(s.beginPath(),s.moveTo(e[0][0]+.5,e[0][1]+.5),a=1,o=e.length;a<o;a++)s.lineTo(e[a][0]+.5,e[a][1]+.5);void 0!==i&&s.stroke(),void 0!==n&&s.fill(),void 0!==this.targetX&&void 0!==this.targetY&&s.isPointInPath(this.targetX,this.targetY)&&(this.currentTargetShapeId=t)},_drawCircle:function(t,e,i,n,r,a,o){var l=this._getContext(r,a,o);l.beginPath(),l.arc(e,i,n,0,2*s.PI,!1),void 0!==this.targetX&&void 0!==this.targetY&&l.isPointInPath(this.targetX,this.targetY)&&(this.currentTargetShapeId=t),void 0!==r&&l.stroke(),void 0!==a&&l.fill()},_drawPieSlice:function(t,e,i,n,r,a,o,s){var l=this._getContext(o,s);l.beginPath(),l.moveTo(e,i),l.arc(e,i,n,r,a,!1),l.lineTo(e,i),l.closePath(),void 0!==o&&l.stroke(),s&&l.fill(),void 0!==this.targetX&&void 0!==this.targetY&&l.isPointInPath(this.targetX,this.targetY)&&(this.currentTargetShapeId=t)},_drawRect:function(t,e,i,n,r,a,o){return this._drawShape(t,[[e,i],[e+n,i],[e+n,i+r],[e,i+r],[e,i]],a,o)},appendShape:function(t){return this.shapes[t.id]=t,this.shapeseq.push(t.id),this.lastShapeId=t.id,t.id},replaceWithShape:function(t,e){var i,n=this.shapeseq;for(this.shapes[e.id]=e,i=n.length;i--;)n[i]==t&&(n[i]=e.id);delete this.shapes[t]},replaceWithShapes:function(t,e){var i,n,r,a=this.shapeseq,o={};for(n=t.length;n--;)o[t[n]]=!0;for(n=a.length;n--;)i=a[n],o[i]&&(a.splice(n,1),delete this.shapes[i],r=n);for(n=e.length;n--;)a.splice(r,0,e[n].id),this.shapes[e[n].id]=e[n]},insertAfterShape:function(t,e){var i,n=this.shapeseq;for(i=n.length;i--;)if(n[i]===t)return n.splice(i+1,0,e.id),void(this.shapes[e.id]=e)},removeShapeId:function(t){var e,i=this.shapeseq;for(e=i.length;e--;)if(i[e]===t){i.splice(e,1);break}delete this.shapes[t]},getShapeAt:function(t,e,i){return this.targetX=e,this.targetY=i,this.render(),this.currentTargetShapeId},render:function(){var t,e,i,n=this.shapeseq,r=this.shapes,a=n.length,o=this._getContext();for(o.clearRect(0,0,this.pixelWidth,this.pixelHeight),i=0;i<a;i++)t=n[i],e=r[t],this["_draw"+e.type].apply(this,e.args);this.interact||(this.shapes={},this.shapeseq=[])}}),D=i(O,{init:function(e,i,n){var r;D._super.init.call(this,e,i,n),n[0]&&(n=n[0]),t.data(n,"_jqs_vcanvas",this),this.canvas=o.createElement("span"),t(this.canvas).css({display:"inline-block",position:"relative",overflow:"hidden",width:e,height:i,margin:"0px",padding:"0px",verticalAlign:"top"}),this._insert(this.canvas,n),this._calculatePixelDims(e,i,this.canvas),this.canvas.width=this.pixelWidth,this.canvas.height=this.pixelHeight,r='<v:group coordorigin="0 0" coordsize="'+this.pixelWidth+" "+this.pixelHeight+'" 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filled="false"':' fillColor="'+a+'" filled="true" ','<v:oval  id="jqsshape'+t+'" '+s+l+' style="position:absolute;top:'+i+"px; left:"+e+"px; width:"+2*n+"px; height:"+2*n+'px"></v:oval>'},_drawPieSlice:function(t,e,i,n,r,a,o,l){var u,c,h,d,f,p,m;if(r===a)return"";if(a-r==2*s.PI&&(r=0,a=2*s.PI),c=e+s.round(s.cos(r)*n),h=i+s.round(s.sin(r)*n),d=e+s.round(s.cos(a)*n),f=i+s.round(s.sin(a)*n),c===d&&h===f){if(a-r<s.PI)return"";c=d=e+n,h=f=i}return c===d&&h===f&&a-r<s.PI?"":(u=[e-n,i-n,e+n,i+n,c,h,d,f],p=void 0===o?' stroked="false" ':' strokeWeight="1px" strokeColor="'+o+'" ',m=void 0===l?' filled="false"':' fillColor="'+l+'" filled="true" ','<v:shape coordorigin="0 0" coordsize="'+this.pixelWidth+" "+this.pixelHeight+'"  id="jqsshape'+t+'" '+p+m+' style="position:absolute;left:0px;top:0px;height:'+this.pixelHeight+"px;width:"+this.pixelWidth+'px;padding:0px;margin:0px;"  path="m '+e+","+i+" wa "+u.join(", ")+' x e"> </v:shape>')},_drawRect:function(t,e,i,n,r,a,o){return this._drawShape(t,[[e,i],[e,i+r],[e+n,i+r],[e+n,i],[e,i]],a,o)},reset:function(){this.group.innerHTML=""},appendShape:function(t){var e=this["_draw"+t.type].apply(this,t.args);return this.rendered?this.group.insertAdjacentHTML("beforeEnd",e):this.prerender+=e,this.lastShapeId=t.id,t.id},replaceWithShape:function(e,i){var n=t("#jqsshape"+e),r=this["_draw"+i.type].apply(this,i.args);n[0].outerHTML=r},replaceWithShapes:function(e,i){var n,r=t("#jqsshape"+e[0]),a="",o=i.length;for(n=0;n<o;n++)a+=this["_draw"+i[n].type].apply(this,i[n].args);for(r[0].outerHTML=a,n=1;n<e.length;n++)t("#jqsshape"+e[n]).remove()},insertAfterShape:function(e,i){var n=t("#jqsshape"+e),r=this["_draw"+i.type].apply(this,i.args);n[0].insertAdjacentHTML("afterEnd",r)},removeShapeId:function(e){var i=t("#jqsshape"+e);this.group.removeChild(i[0])},getShapeAt:function(t,e,i){return t.id.substr(8)},render:function(){this.rendered||(this.group.innerHTML=this.prerender,this.rendered=!0)}})})}(document,Math)},function(t,e,i){(function(t){!function(){function e(){var t="{}";if("userDataBehavior"==C){w.load("jStorage");try{t=w.getAttribute("jStorage")}catch(t){}try{T=w.getAttribute("jStorage_update")}catch(t){}b.jStorage=t}s(),c(),h()}function i(){"localStorage"==C||"globalStorage"==C?"addEventListener"in window?window.addEventListener("storage",n,!1):document.attachEvent("onstorage",n):"userDataBehavior"==C&&setInterval(n,1e3)}function n(){var t;clearTimeout(S),S=setTimeout(function(){if("localStorage"==C||"globalStorage"==C)t=b.jStorage_update;else if("userDataBehavior"==C){w.load("jStorage");try{t=w.getAttribute("jStorage_update")}catch(t){}}t&&t!=T&&(T=t,r())},25)}function r(){var t,i=v.parse(v.stringify(y.__jstorage_meta.CRC32));e(),t=v.parse(v.stringify(y.__jstorage_meta.CRC32));var n,r=[],o=[];for(n in 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Are you sure?":"これは永久にあなたのデータセット内のデータを削除します。本当に？",Dataset:"データセット","This history is empty. Click 'Get Data' on the left tool menu to start":"ヒストリーは空です。解析をはじめるには、左パネルの 'データ取得' をクリック","You must be logged in to create histories":"ヒストリーを作成するためにはログインする必要があります","View data":"データを表示",Download:"ダウンロード","Download dataset":"データセットをダウンロード","View details":"細部を表示","This job is waiting to run":"ジョブは実行待ちです","This job is currently running":"ジョブは実行中です","An error occurred with this dataset":"このジョブの実行中に発生したエラー","No data":"データ無し","This dataset has been deleted and removed from disk":"このデータセットは、永続的にディスクから削除されました","This dataset has been deleted":"このデータセットは削除されました","This dataset has been hidden":"このデータセットは、非表示にされた",format:"フォーマット",database:"データベース","Edit attributes":"変数を編集する",Delete:"削除する","View or report this error":"このエラーを届け出る","Run this job again":"もう一度このジョブを実行する",Visualize:"可視化する","Undelete it":"復元する","Permanently remove it from disk":"永久にディスクから削除","Unhide it":"非表示解除する","Search Tool Shed":"Tool Shed で探す","Search Tool Shed (Beta)":"Tool Shed (Beta) で探す","Monitor installing 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i=t.find(".button-"+e);i.on("click",function(){n._setState(e,!i.data("is_expanded"))})}function i(r,a,s){s=s||[];for(var l in a){var u=a[l],c=u.options&&u.options.length>0,h=s.slice(0);n.header_index[u.value]=h.slice(0);var d=t("<div/>");if(c){var f=o.default.uid(),p=t("<span/>").addClass("button-"+f).addClass("ui-drilldown-button fa fa-plus-square"),m=t("<div/>").addClass("subgroup-"+f).addClass("ui-drilldown-subgroup");d.append(t("<div/>").append(p).append(n._templateOption({label:u.name,value:u.value}))),h.push(f),i(m,u.options,h),d.append(m),e(d,f)}else d.append(n._templateOption({label:u.name,value:u.value}));r.append(d)}}var n=this;this.header_index={};var r=t("<div/>");return i(r,this.model.get("data")),r},_template:function(){return t("<div/>").addClass("ui-options-list drilldown-container").attr("id",this.model.id)}});e.default={View:u}}).call(e,i(0),i(1))},function(t,e,i){"use strict";(function(t,n){function r(t){return t&&t.__esModule?t:{default:t}}function a(t,e){e||(e=0);var i=Math.pow(10,e);return Math.round(t*i)/i}function o(e){var i=t.Deferred();return t.ajax({type:"HEAD",url:e,beforeSend:function(t){t.setRequestHeader("Range","bytes=0-10")},success:function(t,e,n){i.resolve(206===n.status)}}),i}Object.defineProperty(e,"__esModule",{value:!0});var s=i(3),l=r(s),u=i(1),c=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(u),h=i(27),d=r(h),f=i(149),p=r(f),m=i(36),g=r(m),v=i(150),_=r(v),y=i(151),b=r(y),w=i(152),x=r(w),C=i(35),k=r(C),S=i(85),T=r(S),A=i(37),M=r(A),E=i(233),O=r(E);i(20);var $=c.extend,D={},j=function(t,e){D[t.attr("id")]=e},P=function(e,i,n,r){n=".group",D[e.attr("id")]=r,e.bind("drag",{handle:"."+i,relative:!0},function(e,i){var r,a,o,s,l,u=(t(this),t(this).parent()),c=u.children(".track,.group"),h=D[t(this).attr("id")];if(a=t(this).parents(n),0!==a.length){o=a.position().top,s=o+a.outerHeight();var d=D[a.attr("id")];if(i.offsetY<o)return t(this).insertBefore(a),d.remove_drawable(h),void d.container.add_drawable_before(h,d);if(i.offsetY>s)return t(this).insertAfter(a),d.remove_drawable(h),void d.container.add_drawable(h)}for(a=null,l=0;l<c.length;l++)if(r=t(c.get(l)),o=r.position().top,s=o+r.outerHeight(),r.is(n)&&this!==r.get(0)&&i.offsetY>=o&&i.offsetY<=s)return i.offsetY-o<s-i.offsetY?r.find(".content-div").prepend(this):r.find(".content-div").append(this),h.container&&h.container.remove_drawable(h),void D[r.attr("id")].add_drawable(h);for(l=0;l<c.length&&(r=t(c.get(l)),!(i.offsetY<r.position().top)||r.hasClass("reference-track")||r.hasClass("intro"));l++);l===c.length?this!==c.get(l-1)&&(u.append(this),D[u.attr("id")].move_drawable(h,l)):this!==c.get(l)&&(t(this).insertBefore(c.get(l)),D[u.attr("id")].move_drawable(h,i.deltaY>0?l-1:l))}).bind("dragstart",function(){t(this).addClass("dragging")}).bind("dragend",function(){t(this).removeClass("dragging")})},R="A converter for this dataset is not installed. Please check your datatypes_conf.xml file.",I=["Histogram","Line","Filled","Intensity"],N=function t(e,i,n){if(t.id_counter||(t.id_counter=0),this.id=t.id_counter++,this.view=e,this.container=i,this.drag_handle_class=n.drag_handle_class,this.is_overview=!1,this.action_icons={},this.config=M.default.ConfigSettingCollection.from_models_and_saved_values(this.config_params,n.prefs),this.config.get_value("name")||this.config.set_value("name",n.name),this.config_onchange&&this.config.on("change",this.config_onchange,this),this.container_div=this.build_container_div(),this.header_div=null,!1!==n.header){var r=new p.default.TrackHeaderView({model:this,id:this.id});this.header_div=r.$el,this.container_div.append(this.header_div);var a=r.icons_div;this.action_icons=r.action_icons,this.container_div.hover(function(){a.show()},function(){a.hide()})}};N.prototype.action_icons_def=[{name:"toggle_icon",title:"Hide/show content",css_class:"toggle",on_click_fn:function(t){t.config.get_value("content_visible")?(t.action_icons.toggle_icon.addClass("toggle-expand").removeClass("toggle"),t.hide_contents(),t.config.set_value("content_visible",!1)):(t.action_icons.toggle_icon.addClass("toggle").removeClass("toggle-expand"),t.config.set_value("content_visible",!0),t.show_contents())}},{name:"settings_icon",title:(0,l.default)("Edit settings"),css_class:"gear",on_click_fn:function(t){new M.default.ConfigSettingCollectionView({collection:t.config}).render_in_modal("Configure Track")}},{name:"remove_icon",title:(0,l.default)("Remove"),css_class:"remove-icon",on_click_fn:function(e){t(".tooltip").remove(),e.remove()}}],$(N.prototype,{config_params:[{key:"name",label:"Name",type:"text",default_value:""},{key:"content_visible",type:"bool",default_value:!0,hidden:!0}],config_onchange:function(){},init:function(){},changed:function(){this.view.changed()},can_draw:function(){return!(!this.enabled||!this.config.get_value("content_visible"))},request_draw:function(){},_draw:function(t){},to_dict:function(){},set_name:function(t){this.old_name=this.config.get_value("name"),this.config.set_value("name",t)},revert_name:function(){this.old_name&&this.config.set_value("name",this.old_name)},remove:function(){this.changed(),this.container.remove_drawable(this);var e=this.view;this.container_div.hide(0,function(){t(this).remove(),e.update_intro_div()})},build_container_div:function(){},update_icons:function(){},hide_contents:function(){},show_contents:function(){},get_drawables:function(){}});var L=function(t,e,i){N.call(this,t,e,i),this.obj_type=i.obj_type,this.drawables=[]};$(L.prototype,N.prototype,{unpack_drawables:function(t){this.drawables=[];for(var e,i=0;i<t.length;i++)e=at(t[i],this.view,this),this.add_drawable(e)},init:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].init()},_draw:function(t){for(var e=0;e<this.drawables.length;e++)this.drawables[e]._draw(t)},to_dict:function(){for(var t=[],e=0;e<this.drawables.length;e++)t.push(this.drawables[e].to_dict());return{prefs:this.config.to_key_value_dict(),obj_type:this.obj_type,drawables:t}},add_drawable:function(t){this.drawables.push(t),t.container=this,this.changed()},add_drawable_before:function(t,e){this.changed();var i=this.drawables.indexOf(e);return-1!==i&&(this.drawables.splice(i,0,t),!0)},replace_drawable:function(t,e,i){var n=this.drawables.indexOf(t);return-1!==n&&(this.drawables[n]=e,i&&t.container_div.replaceWith(e.container_div),this.changed()),n},remove_drawable:function(t){var e=this.drawables.indexOf(t);return-1!==e&&(this.drawables.splice(e,1),t.container=null,this.changed(),!0)},move_drawable:function(t,e){var i=this.drawables.indexOf(t);return-1!==i&&(this.drawables.splice(i,1),this.drawables.splice(e,0,t),this.changed(),!0)},get_drawables:function(){return this.drawables},get_tracks:function(t){for(var e,i=this.drawables.slice(0),n=[];0!==i.length;)e=i.shift(),e instanceof t?n.push(e):e.drawables&&(i=i.concat(e.drawables));return n}});var z=function(e,i,n){if($(n,{obj_type:"DrawableGroup",drag_handle_class:"group-handle"}),L.call(this,e,i,n),this.content_div=t("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div),j(this.container_div,this),j(this.content_div,this),P(this.container_div,this.drag_handle_class,".group",this),this.filters_manager=new x.default.FiltersManager(this),this.header_div.after(this.filters_manager.parent_div),this.filters_manager.parent_div.after(t("<div style='clear: both'/>")),this.saved_filters_managers=[],"drawables"in n&&this.unpack_drawables(n.drawables),"filters"in n){var r=this.filters_manager;this.filters_manager=new x.default.FiltersManager(this,n.filters),r.parent_div.replaceWith(this.filters_manager.parent_div),n.filters.visible&&this.setup_multitrack_filtering()}};$(z.prototype,N.prototype,L.prototype,{action_icons_def:[N.prototype.action_icons_def[0],N.prototype.action_icons_def[1],{name:"composite_icon",title:(0,l.default)("Show composite track"),css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_composite_track()}},{name:"filters_icon",title:(0,l.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?(t.filters_manager.clear_filters(),t._restore_filter_managers()):(t.setup_multitrack_filtering(),t.request_draw({clear_tile_cache:!0})),t.filters_manager.toggle()}},N.prototype.action_icons_def[2]],build_container_div:function(){var e=t("<div/>").addClass("group").attr("id","group_"+this.id);return this.container&&this.container.content_div.append(e),e},hide_contents:function(){this.tiles_div.hide()},show_contents:function(){this.tiles_div.show(),this.request_draw()},update_icons:function(){var e=this.drawables.length;if(0===e)this.action_icons.composite_icon.hide(),this.action_icons.filters_icon.hide();else if(1===e)this.action_icons.composite_icon.toggle(this.drawables[0]instanceof K),this.action_icons.filters_icon.hide();else{var i,n,r,a=this.drawables[0].get_type(),o=0;for(i=0;i<e;i++){if(r=this.drawables[i],r.get_type()!==a){can_composite=!1;break}r instanceof et&&o++}if(this.drawables[0]instanceof Z?this.action_icons.composite_icon.show():(this.action_icons.composite_icon.hide(),t(".tooltip").remove()),o>1&&o===this.drawables.length){var s,l={};for(r=this.drawables[0],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],l[s.name]=[s];for(i=1;i<this.drawables.length;i++)for(r=this.drawables[i],n=0;n<r.filters_manager.filters.length;n++)s=r.filters_manager.filters[n],s.name in l&&l[s.name].push(s);this.filters_manager.remove_all();var u,c;for(var h in l)u=l[h],u.length===o&&(c=new x.default.NumberFilter({name:u[0].name,index:u[0].index}),this.filters_manager.add_filter(c));this.action_icons.filters_icon.toggle(this.filters_manager.filters.length>0)}else this.action_icons.filters_icon.hide()}},_restore_filter_managers:function(){for(var t=0;t<this.drawables.length;t++)this.drawables[t].filters_manager=this.saved_filters_managers[t];this.saved_filters_managers=[]},setup_multitrack_filtering:function(){if(this.filters_manager.filters.length>0){this.saved_filters_managers=[];for(var t=0;t<this.drawables.length;t++){var e=this.drawables[t];this.saved_filters_managers.push(e.filters_manager),e.filters_manager=this.filters_manager}}this.filters_manager.init_filters()},show_composite_track:function(){var t=new K(this.view,this.view,{name:this.config.get_value("name"),drawables:this.drawables});this.container.replace_drawable(this,t,!0);t.request_draw()},add_drawable:function(t){L.prototype.add_drawable.call(this,t),this.update_icons()},remove_drawable:function(t){L.prototype.remove_drawable.call(this,t),this.update_icons()},to_dict:function(){this.filters_manager.visible()&&this._restore_filter_managers();var t=$(L.prototype.to_dict.call(this),{filters:this.filters_manager.to_dict()});return this.filters_manager.visible()&&this.setup_multitrack_filtering(),t},request_draw:function(t){c.each(this.drawables,function(e){e.request_draw(t)})}});var H=n.View.extend({initialize:function(t){$(t,{obj_type:"View"}),L.call(this,"View",t.container,t),this.chrom=null,this.vis_id=t.vis_id,this.dbkey=t.dbkey,this.stand_alone=void 0===t.stand_alone||t.stand_alone,this.label_tracks=[],this.tracks_to_be_redrawn=[],this.max_low=0,this.max_high=0,this.zoom_factor=3,this.min_separation=30,this.has_changes=!1,this.load_chroms_deferred=null,this.render(),this.canvas_manager=new d.default.CanvasManager(this.container.get(0).ownerDocument),this.reset(),this.config=M.default.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"}],{name:t.name})},render:function(){this.requested_redraw=!1;var e=this.container,i=this;this.top_container=t("<div/>").addClass("top-container").appendTo(e),this.browser_content_div=t("<div/>").addClass("content").appendTo(e),this.bottom_container=t("<div/>").addClass("bottom-container").appendTo(e),this.top_labeltrack=t("<div/>").addClass("top-labeltrack").appendTo(this.top_container),this.viewport_container=t("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div),this.content_div=this.viewport_container,j(this.viewport_container,i),this.intro_div=t("<div/>").addClass("intro").appendTo(this.viewport_container);t("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){d.default.select_datasets({dbkey:i.dbkey},function(t){c.each(t,function(t){i.add_drawable(at(t,i,i))})})});this.nav_container=t("<div/>").addClass("trackster-nav-container").prependTo(this.top_container),this.nav=t("<div/>").addClass("trackster-nav").appendTo(this.nav_container),this.stand_alone&&(this.nav_container.addClass("stand-alone"),this.nav.addClass("stand-alone")),this.overview=t("<div/>").addClass("overview").appendTo(this.bottom_container),this.overview_viewport=t("<div/>").addClass("overview-viewport").appendTo(this.overview),this.overview_close=t("<a/>").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport),this.overview_highlight=t("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport),this.overview_box_background=t("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport),this.overview_box=t("<div/>").addClass("overview-box").appendTo(this.overview_viewport),this.default_overview_height=this.overview_box.height(),this.nav_controls=t("<div/>").addClass("nav-controls").appendTo(this.nav),this.chrom_select=t("<select/>").attr({name:"chrom"}).addClass("chrom-nav").append("<option value=''>Loading</option>").appendTo(this.nav_controls);var n=function(e){"focusout"!==e.type&&13!==(e.keyCode||e.which)&&27!==(e.keyCode||e.which)||(27!==(e.keyCode||e.which)&&i.go_to(t(this).val()),t(this).hide(),t(this).val(""),i.location_span.show(),i.chrom_select.show()),e.stopPropagation()};this.nav_input=t("<input/>").addClass("nav-input").hide().bind("keyup focusout",n).appendTo(this.nav_controls),this.location_span=t("<span/>").addClass("location").attr("title","Click to change location").tooltip({placement:"bottom"}).appendTo(this.nav_controls),this.location_span.click(function(){i.location_span.hide(),i.chrom_select.hide(),i.nav_input.val(i.chrom+":"+i.low+"-"+i.high),i.nav_input.css("display","inline-block"),i.nav_input.select(),i.nav_input.focus(),i.nav_input.autocomplete({source:function(e,n){var r=[],a=t.map(i.get_tracks(et),function(t){return t.data_manager.search_features(e.term).success(function(t){r=r.concat(t)})});t.when.apply(t,a).done(function(){n(t.map(r,function(t){return{label:t[0],value:t[1]}}))})},minLength:2})}),void 0!==this.vis_id&&(this.hidden_input=t("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)),this.zo_link=t("<a/>").attr("id","zoom-out").attr("title","Zoom out").tooltip({placement:"bottom"}).click(function(){i.zoom_out()}).appendTo(this.nav_controls),this.zi_link=t("<a/>").attr("id","zoom-in").attr("title","Zoom in").tooltip({placement:"bottom"}).click(function(){i.zoom_in()}).appendTo(this.nav_controls),this.load_chroms_deferred=this.load_chroms({low:0}),this.chrom_select.bind("change",function(){i.change_chrom(i.chrom_select.val())}),this.browser_content_div.click(function(e){t(this).find("input").trigger("blur")}),this.browser_content_div.bind("dblclick",function(t){i.zoom_in(t.pageX,this.viewport_container)}),this.overview_box.bind("dragstart",function(t,e){this.current_x=e.offsetX}).bind("drag",function(t,e){var n=e.offsetX-this.current_x;this.current_x=e.offsetX;var r=Math.round(n/i.viewport_container.width()*(i.max_high-i.max_low));i.move_delta(-r)}),this.overview_close.click(function(){i.reset_overview()}),this.viewport_container.bind("draginit",function(t,e){if(t.clientX>i.viewport_container.width()-16)return!1}).bind("dragstart",function(t,e){e.original_low=i.low,e.current_height=t.clientY,e.current_x=e.offsetX}).bind("drag",function(e,n){var r=t(this),a=n.offsetX-n.current_x,o=r.scrollTop()-(e.clientY-n.current_height);r.scrollTop(o),n.current_height=e.clientY,n.current_x=n.offsetX;var s=Math.round(a/i.viewport_container.width()*(i.high-i.low));i.move_delta(s)}),this.top_labeltrack.bind("dragstart",function(e,n){return t("<div/>").addClass("zoom-area").css("height",i.browser_content_div.height()+i.top_labeltrack.height()+1).appendTo(t(this))}).bind("drag",function(e,n){t(n.proxy).css({left:Math.min(e.pageX,n.startX)-i.container.offset().left,width:Math.abs(e.pageX-n.startX)});var r=Math.min(e.pageX,n.startX)-i.container.offset().left,a=Math.max(e.pageX,n.startX)-i.container.offset().left,o=i.high-i.low,s=i.viewport_container.width();i.update_location(Math.round(r/s*o)+i.low,Math.round(a/s*o)+i.low)}).bind("dragend",function(e,n){var r=Math.min(e.pageX,n.startX),a=Math.max(e.pageX,n.startX),o=i.high-i.low,s=i.viewport_container.width(),l=i.low;i.low=Math.round(r/s*o)+l,i.high=Math.round(a/s*o)+l,t(n.proxy).remove(),i.request_redraw()}),this.add_label_track(new J(this,{content_div:this.top_labeltrack})),t(window).bind("resize",function(){this.resize_timer&&clearTimeout(this.resize_timer),this.resize_timer=setTimeout(function(){i.resize_window()},500)}),t(document).bind("redraw",function(){i.redraw()}),this.reset(),t(window).trigger("resize")},get_base_color:function(t){return this.config.get_value(t.toLowerCase()+"_color")||this.config.get_value("n_color")}});$(H.prototype,L.prototype,{changed:function(){this.has_changes=!0},update_intro_div:function(){this.intro_div.toggle(0===this.drawables.length)},trigger_navigate:function(t,e,i,n){if(this.timer&&clearTimeout(this.timer),n){var r=this;this.timer=setTimeout(function(){r.trigger("navigate",t+":"+e+"-"+i)},500)}else view.trigger("navigate",t+":"+e+"-"+i)},update_location:function(t,e){this.location_span.text(g.default.commatize(t)+" - "+g.default.commatize(e)),this.nav_input.val(this.chrom+":"+g.default.commatize(t)+"-"+g.default.commatize(e));var i=this.chrom_select.val();""!==i&&this.trigger_navigate(i,this.low,this.high,!0)},load_chroms:function(e){e.num=100;var i=this,n=t.Deferred();return t.ajax({url:Galaxy.root+"api/genomes/"+this.dbkey,data:e,dataType:"json",success:function(e){if(0!==e.chrom_info.length){if(e.reference){var r=new Q(i);i.add_label_track(r),i.reference_track=r}i.chrom_data=e.chrom_info,i.chrom_select.html(""),i.chrom_select.append(t('<option value="">Select Chrom/Contig</option>'));for(var a=0,o=i.chrom_data.length;a<o;a++){var s=i.chrom_data[a].chrom,l=t("<option>");l.text(s),l.val(s),i.chrom_select.append(l)}e.prev_chroms&&i.chrom_select.append(t('<option value="previous">Previous 100</option>')),e.next_chroms&&i.chrom_select.append(t('<option value="next">Next 100</option>')),i.chrom_start_index=e.start_index,n.resolve(e.chrom_info)}},error:function(){alert("Could not load chroms for this dbkey: "+i.dbkey)}}),n},change_chrom:function(e,i,n){var r=this;if(!r.chrom_data)return void r.load_chroms_deferred.then(function(){r.change_chrom(e,i,n)});if(e&&"None"!==e){if("previous"===e)return void r.load_chroms({low:this.chrom_start_index-100});if("next"===e)return void r.load_chroms({low:this.chrom_start_index+100});var a=t.grep(r.chrom_data,function(t,i){return t.chrom===e})[0];if(void 0===a)return void r.load_chroms({chrom:e},function(){r.change_chrom(e,i,n)});if(e!==r.chrom){r.chrom=e,r.chrom_select.val(r.chrom),r.max_high=a.len-1,r.reset();for(var o=0,s=r.drawables.length;o<s;o++){var l=r.drawables[o];l.init&&l.init()}r.reference_track&&r.reference_track.init()}void 0===i&&void 0===n?(r.low=0,r.high=r.max_high):(r.low=void 0!==i?Math.max(i,0):0,void 0===n?(r.low=Math.max(r.low-15,0),r.high=r.low+30):r.high=Math.min(n,r.max_high)),r.request_redraw()}},go_to:function(t){t=t.replace(/,/g,""),t=t.replace(/:|\-/g," ");var e=t.split(/\s+/),i=e[0],n=e[1]?parseInt(e[1],10):void 0,r=e[2]?parseInt(e[2],10):void 0;this.change_chrom(i,n,r)},move_fraction:function(t){var e=this,i=e.high-e.low;this.move_delta(t*i)},move_delta:function(t){var e=this,i=e.high-e.low;e.low-t<e.max_low?(e.low=e.max_low,e.high=e.max_low+i):e.high-t>e.max_high?(e.high=e.max_high,e.low=e.max_high-i):(e.high-=t,e.low-=t),e.request_redraw({data_fetch:!1}),this.redraw_on_move_fn&&clearTimeout(this.redraw_on_move_fn),this.redraw_on_move_fn=setTimeout(function(){e.request_redraw()},200);var n=e.chrom_select.val();this.trigger_navigate(n,e.low,e.high,!0)},add_drawable:function(t){L.prototype.add_drawable.call(this,t),t.init(),this.changed(),this.update_intro_div();var e=this;t.config.on("change",function(){e.changed()})},add_label_track:function(t){t.view=this,t.init(),this.label_tracks.push(t)},remove_drawable:function(e,i){if(L.prototype.remove_drawable.call(this,e),i){var n=this;e.container_div.hide(0,function(){t(this).remove(),n.update_intro_div()})}},reset:function(){this.low=this.max_low,this.high=this.max_high,this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(t,e){var i=this,n=e?[e]:i.drawables;c.each(n,function(e){var n=c.find(i.tracks_to_be_redrawn,function(t){return t[0]===e});n?n[1]=t:i.tracks_to_be_redrawn.push([e,t])}),this.requested_redraw||(requestAnimationFrame(function(){i._redraw()}),this.requested_redraw=!0)},_redraw:function(){this.requested_redraw=!1;var t=this.low,e=this.high;t<this.max_low&&(t=this.max_low),e>this.max_high&&(e=this.max_high);var i=this.high-this.low;0!==this.high&&i<this.min_separation&&(e=t+this.min_separation),this.low=Math.floor(t),this.high=Math.ceil(e),this.update_location(this.low,this.high),this.resolution_px_b=this.viewport_container.width()/(this.high-this.low);var n=this.low/(this.max_high-this.max_low)*this.overview_viewport.width()||0,r=(this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width()||0;this.overview_box.css({left:n,width:Math.max(13,r)}).show(),r<13&&this.overview_box.css("left",n-(13-r)/2),this.overview_highlight&&this.overview_highlight.css({left:n,width:r}),c.each(this.tracks_to_be_redrawn,function(t){var e=t[0],i=t[1];e&&e._draw(i)}),this.tracks_to_be_redrawn=[],c.each(this.label_tracks,function(t){t._draw()})},zoom_in:function(t,e){if(!(0===this.max_high||this.high-this.low<=this.min_separation)){var i=this.high-this.low,n=i/2+this.low,r=i/this.zoom_factor/2;t&&(n=t/this.viewport_container.width()*(this.high-this.low)+this.low),this.low=Math.round(n-r),this.high=Math.round(n+r),this.changed(),this.request_redraw()}},zoom_out:function(){if(0!==this.max_high){var t=this.high-this.low,e=t/2+this.low,i=t*this.zoom_factor/2;this.low=Math.round(e-i),this.high=Math.round(e+i),this.changed(),this.request_redraw()}},resize_viewport:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height())},resize_window:function(){this.resize_viewport(),this.request_redraw()},set_overview:function(t){if(this.overview_drawable){if(this.overview_drawable.dataset.id===t.dataset.id)return;this.overview_viewport.find(".track").remove()}var e=t.copy({content_div:this.overview_viewport}),i=this;e.header_div.hide(),e.is_overview=!0,i.overview_drawable=e,this.overview_drawable.postdraw_actions=function(){i.overview_highlight.show().height(i.overview_drawable.content_div.height()),i.overview_viewport.height(i.overview_drawable.content_div.height()+i.overview_box.outerHeight()),i.overview_close.show(),i.resize_window()},i.overview_drawable.request_draw(),this.changed()},reset_overview:function(){t(".tooltip").remove(),this.overview_viewport.find(".track-tile").remove(),this.overview_viewport.height(this.default_overview_height),this.overview_box.height(this.default_overview_height),this.overview_close.hide(),this.overview_highlight.hide(),view.resize_window(),view.overview_drawable=null}});var q=T.default.Tool.extend({defaults:{track:null},initialize:function(t){T.default.Tool.prototype.initialize.call(this,t);var e=!0;void 0!==t.tool_state&&void 0!==t.tool_state.hidden&&(e=t.tool_state.hidden),this.set("hidden",e),this.remove_inputs(["data","hidden_data","conditional"])},state_dict:function(t){return c.extend(this.get_inputs_dict(),{hidden:!this.is_visible()})}}),F=n.View.extend({events:{"change :input":"update_value"},render:function(){var e=this.$el.addClass("param-row"),i=this.model;t("<div>").addClass("param-label").text(i.get("label")).appendTo(e);t("<div/>").addClass("param-input").html(i.get("html")).appendTo(e).find(":input").val(i.get("value")),t("<div style='clear: both;'/>").appendTo(e)},update_value:function(e){this.model.set_value(t(e.target).val())}}),B=n.View.extend({initialize:function(t){this.model.on("change:hidden",this.set_visible,this)},render:function(){var e=this,i=this.model,n=this.$el.addClass("dynamic-tool").hide();n.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).keydown(function(t){t.stopPropagation()});t("<div class='tool-name'>").appendTo(n).text(i.get("name"));i.get("inputs").each(function(t){var e=new F({model:t});e.render(),n.append(e.$el)}),n.find("input").click(function(){t(this).select()});var r=t("<div>").addClass("param-row").appendTo(n),a=t("<input type='submit'>").attr("value","Run on complete dataset").appendTo(r);t("<input type='submit'>").attr("value","Run on visible region").appendTo(r).click(function(){e.run_on_region()}),a.click(function(){e.run_on_dataset()}),i.is_visible()&&this.$el.show()},set_visible:function(){this.$el.toggle(this.model.is_visible())},update_params:function(){for(var t=0;t<this.params.length;t++)this.params[t].update_value()},run_on_dataset:function(){var t=this.model;this.run({target_dataset_id:this.model.get("track").dataset.id,action:"rerun",tool_id:t.id},null,function(e){Galaxy.modal.show({title:t.get("name")+" is Running",body:t.get("name")+" is running on the complete dataset. Tool outputs are in dataset's history.",buttons:{Close:function(){Galaxy.modal.hide()}}})})},run_on_region:function(){var t,e=this.model.get("track"),i=this.model,n=new d.default.GenomeRegion({chrom:e.view.chrom,start:e.view.low,end:e.view.high}),r={target_dataset_id:e.dataset.id,action:"rerun",tool_id:i.id,regions:[n.toJSON()]},a=e,o=i.get("name")+a.tool_region_and_parameters_str(n);if(a.container===view){var s=new z(view,view,{name:e.config.get_value("name")}),l=a.container.replace_drawable(a,s,!1);s.container_div.insertBefore(a.view.content_div.children()[l]),s.add_drawable(a),a.container_div.appendTo(s.content_div),t=s}else t=a.container;var u=new a.constructor(view,t,{name:o,hda_ldda:"hda"});u.init_for_tool_data(),u.change_mode(a.mode),u.set_filters_manager(a.filters_manager.copy(u)),u.update_icons(),t.add_drawable(u),u.tiles_div.text("Starting job."),this.run(r,u,function(t){u.set_dataset(new k.default.Dataset(t)),u.tiles_div.text("Running job."),u.init()})},run:function(e,i,n){e.inputs=this.model.get_inputs_dict();var r=new g.default.ServerStateDeferred({ajax_settings:{url:Galaxy.root+"api/tools",data:JSON.stringify(e),dataType:"json",contentType:"application/json",type:"POST"},interval:2e3,success_fn:function(t){return"pending"!==t}});t.when(r.go()).then(function(t){"no converter"===t?(i.container_div.addClass("error"),i.content_div.text(R)):t.error?(i.container_div.addClass("error"),i.content_div.text("Tool cannot be rerun: "+t.message)):n(t)})}}),V=function(t,e){b.default.Scaler.call(this,e),this.filter=t};V.prototype.gen_val=function(t){return this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high?this.default_val:(parseFloat(t[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low)};var U=function(e,i,n,r,a){this.track=e,this.region=i,this.low=i.get("start"),this.high=i.get("end"),this.w_scale=n,this.canvas=r,this.html_elt=t("<div class='track-tile'/>").append(r),this.data=a,this.stale=!1};U.prototype.predisplay_actions=function(){};var W=function(t,e,i,n,r){U.call(this,t,e,i,n,r)};W.prototype.predisplay_actions=function(){};var G=function(t,e,i,n,r,a,o,s,l,u,c){U.call(this,t,e,i,n,r),this.mode=a,this.all_slotted=s,this.feature_mapper=l,this.has_icons=!1,this.incomplete_features=u,this.other_tiles_features_drawn={},this.seq_data=c};$(G.prototype,U.prototype),G.prototype.predisplay_actions=function(){};var X=function(e,i,r){$(r,{drag_handle_class:"draghandle"}),N.call(this,e,i,r),this.dataset=null,r.dataset&&(this.dataset=r.dataset instanceof n.Model?r.dataset:new k.default.Dataset(r.dataset)),this.dataset_check_type="converted_datasets_state",this.data_url_extra_params={},this.data_query_wait="data_query_wait"in r?r.data_query_wait:5e3,this.data_manager="data_manager"in r?r.data_manager:new d.default.GenomeDataManager({dataset:this.dataset,genome:new d.default.Genome({key:e.dbkey,chroms_info:{chrom_info:e.chrom_data}}),data_mode_compatible:this.data_and_mode_compatible,can_subset:this.can_subset}),this.min_height_px=16,this.max_height_px=800,this.visible_height_px=this.config.get_value("height"),this.content_div=t("<div class='track-content'>").appendTo(this.container_div),this.container&&(this.container.content_div.append(this.container_div),"resize"in r&&!r.resize||this.add_resize_handle())};$(X.prototype,N.prototype,{action_icons_def:[{name:"mode_icon",title:(0,l.default)("Set display mode"),css_class:"chevron-expand",on_click_fn:function(){}},N.prototype.action_icons_def[0],{name:"overview_icon",title:(0,l.default)("Set as overview"),css_class:"application-dock-270",on_click_fn:function(t){t.view.set_overview(t)}},N.prototype.action_icons_def[1],{name:"filters_icon",title:(0,l.default)("Filters"),css_class:"ui-slider-050",on_click_fn:function(t){t.filters_manager.visible()?t.filters_manager.clear_filters():t.filters_manager.init_filters(),t.filters_manager.toggle()}},{name:"tools_icon",title:(0,l.default)("Tool"),css_class:"hammer",on_click_fn:function(e){e.tool.toggle(),e.tool.is_visible()?e.set_name(e.config.get_value("name")+e.tool_region_and_parameters_str()):e.revert_name(),t(".tooltip").remove()}},{name:"param_space_viz_icon",title:(0,l.default)("Tool parameter space visualization"),css_class:"arrow-split",on_click_fn:function(e){var i="<strong>Tool</strong>:"+e.tool.get("name")+"<br/><strong>Dataset</strong>:"+e.config.get_value("name")+'<br/><strong>Region(s)</strong>: <select name="regions"><option value="cur">current viewing area</option><option value="bookmarks">bookmarks</option><option value="both">current viewing area and bookmarks</option></select>',r=function(){Galaxy.modal.hide(),t(window).unbind("keypress.check_enter_esc")},a=function(){var i,r=t('select[name="regions"] option:selected').val(),a=new d.default.GenomeRegion({chrom:view.chrom,start:view.low,end:view.high}),o=c.map(t(".bookmark"),function(e){return new d.default.GenomeRegion({from_str:t(e).children(".position").text()})});i="cur"===r?[a]:"bookmarks"===r?o:[a].concat(o),Galaxy.modal.hide(),window.location.href=Galaxy.root+"visualization/sweepster?"+t.param({dataset_id:e.dataset.id,hda_ldda:e.dataset.get("hda_ldda"),regions:JSON.stringify(new n.Collection(i).toJSON())})};Galaxy.modal.show({title:"Visualize tool parameter space and output from different parameter settings?",body:i,buttons:{No:r,Yes:a}})}},N.prototype.action_icons_def[2]],can_draw:function(){return this.dataset&&N.prototype.can_draw.call(this)},build_container_div:function(){return t("<div/>").addClass("track").attr("id","track_"+this.id)},set_dataset:function(t){this.dataset=t,this.data_manager.set("dataset",t)},on_resize:function(){this.request_draw({clear_tile_cache:!0})},add_resize_handle:function(){var e=this,i=!1,n=!1,r=t("<div class='track-resize'>");t(e.container_div).hover(function(){e.config.get_value("content_visible")&&(i=!0,r.show())},function(){i=!1,n||r.hide()}),r.hide().bind("dragstart",function(i,r){n=!0,r.original_height=t(e.content_div).height()}).bind("drag",function(i,n){var r=Math.min(Math.max(n.original_height+n.deltaY,e.min_height_px),e.max_height_px);t(e.tiles_div).css("height",r),e.visible_height_px=e.max_height_px===r?0:r,e.on_resize()}).bind("dragend",function(t,a){e.tile_cache.clear(),n=!1,i||r.hide(),e.config.set_value("height",e.visible_height_px),e.changed()}).appendTo(e.container_div)},hide_contents:function(){this.tiles_div.hide(),this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.tiles_div.show(),this.container_div.find(".yaxislabel, .track-resize").show(),this.request_draw()},get_type:function(){return this instanceof J?"LabelTrack":this instanceof Q?"ReferenceTrack":this instanceof Z?"LineTrack":this instanceof nt?"ReadTrack":this instanceof it?"VariantTrack":this instanceof K?"CompositeTrack":this instanceof et?"FeatureTrack":""},show_message:function(e){return this.tiles_div.remove(),t("<span/>").addClass("message").html(e).appendTo(this.content_div)},init:function(e){var i=this;if(i.enabled=!1,i.tile_cache.clear(),i.data_manager.clear(),i.content_div.children().remove(),i.container_div.removeClass("nodata error pending"),i.tiles_div=t("<div/>").addClass("tiles").appendTo(i.content_div),i.dataset.id){var n=t.Deferred(),r={hda_ldda:i.dataset.get("hda_ldda"),data_type:this.dataset_check_type,chrom:i.view.chrom,retry:e};return t.getJSON(this.dataset.url(),r,function(e){if(e&&"error"!==e&&"error"!==e.kind)"no converter"===e?(i.container_div.addClass("error"),i.show_message(R)):"no data"===e||void 0!==e.data&&(null===e.data||0===e.data.length)?(i.container_div.addClass("nodata"),i.show_message("No data for this chrom/contig.")):"pending"===e?(i.container_div.addClass("pending"),i.show_message("Preparing data. This can take a while for a large dataset. If the visualization is saved and closed, preparation will continue in the background."),setTimeout(function(){i.init()},i.data_query_wait)):"data"!==e&&"data"!==e.status||(e.valid_chroms&&(i.valid_chroms=e.valid_chroms,i.update_icons()),i.tiles_div.text("Ready for display"),i.view.chrom?(i.tiles_div.text(""),i.tiles_div.css("height",i.visible_height_px+"px"),i.enabled=!0,t.when.apply(t,i.predraw_init()).done(function(){n.resolve(),i.container_div.removeClass("nodata error pending"),i.request_draw()})):n.resolve());else{i.container_div.addClass("error");var r=i.show_message("Cannot display dataset due to an error. ");e.message&&(r.append(t("<a href='javascript:void(0);'></a>").text("View error").click(function(){Galaxy.modal.show({title:(0,l.default)("Trackster Error"),body:"<pre>"+e.message+"</pre>",buttons:{Close:function(){Galaxy.modal.hide()}}})})),r.append(t("<span/>").text(" ")),r.append(t("<a href='javascript:void(0);'></a>").text("Try again").click(function(){i.init(!0)})))}}),this.update_icons(),n}},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(i&&void 0!==i.min&&void 0!==i.max){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_default_value("min_value",n),e.config.set_default_value("max_value",r),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},get_drawables:function(){return this}});var Y=function(e,i,n){X.call(this,e,i,n);var r=this;if(P(r.container_div,r.drag_handle_class,".group",r),this.filters_manager=new x.default.FiltersManager(this,"filters"in n?n.filters:null),this.data_manager.set("filters_manager",this.filters_manager),this.filters_available=!1,this.tool=n.tool?new q(c.extend(n.tool,{track:this,tool_state:n.tool_state})):null,this.tile_cache=new d.default.Cache(10),this.left_offset=0,this.header_div&&(this.set_filters_manager(this.filters_manager),this.tool)){var a=new B({model:this.tool});a.render(),this.dynamic_tool_div=a.$el,this.header_div.after(this.dynamic_tool_div)}this.tiles_div=t("<div/>").addClass("tiles").appendTo(this.content_div),this.config.get_value("content_visible")||this.tiles_div.hide(),this.overlay_div=t("<div/>").addClass("overlay").appendTo(this.content_div),n.mode&&this.change_mode(n.mode)};$(Y.prototype,N.prototype,X.prototype,{action_icons_def:X.prototype.action_icons_def.concat([{name:"show_more_rows_icon",title:"To minimize track height, not all feature rows are displayed. Click to display more rows.",css_class:"exclamation",on_click_fn:function(e){t(".tooltip").remove(),e.slotters[e.view.resolution_px_b].max_rows*=2,e.request_draw({clear_tile_cache:!0})},hide:!0}]),copy:function(t){var e=this.to_dict();$(e,{data_manager:this.data_manager});var i=new this.constructor(this.view,t,e);return i.change_mode(this.mode),i.enabled=this.enabled,i},set_filters_manager:function(t){this.filters_manager=t,this.header_div.after(this.filters_manager.parent_div)},to_dict:function(){return{track_type:this.get_type(),dataset:{id:this.dataset.id,hda_ldda:this.dataset.get("hda_ldda")},prefs:this.config.to_key_value_dict(),mode:this.mode,filters:this.filters_manager.to_dict(),tool_state:this.tool?this.tool.state_dict():{}}},set_min_max:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){var i=t.data;if(isNaN(parseFloat(e.config.get_value("min_value")))||isNaN(parseFloat(e.config.get_value("max_value")))){var n=i.min,r=i.max;n=Math.floor(Math.min(0,Math.max(n,i.mean-2*i.sd))),r=Math.ceil(Math.max(0,Math.min(r,i.mean+2*i.sd))),e.config.set_value("min_value",n),e.config.set_value("max_value",r)}})},change_mode:function(t){var e=this;return e.mode=t,e.config.set_value("mode",t),"Auto"===t&&this.data_manager.clear(),e.request_draw({clear_tile_cache:!0}),this.action_icons.mode_icon.attr("title","Set display mode (now: "+e.mode+")"),e},update_icons:function(){var t=this;t.action_icons.filters_icon.toggle(t.filters_available),t.action_icons.tools_icon.toggle(null!==t.tool),t.action_icons.param_space_viz_icon.toggle(null!==t.tool)},_gen_tile_cache_key:function(t,e){return t+"_"+e},request_draw:function(t){t&&t.clear_tile_cache&&this.tile_cache.clear(),this.view.request_redraw(t,this)},before_draw:function(){this.max_height_px=0},_draw:function(e){if(this.can_draw()){var i=e&&e.clear_after,n=this.view.low,r=this.view.high,a=this.view.container.width(),o=this.view.resolution_px_b,s=1/o;this.is_overview&&(n=this.view.max_low,r=this.view.max_high,o=a/(view.max_high-view.max_low),s=1/o),this.before_draw(),this.tiles_div.children().addClass("remove");for(var l,u,h=Math.floor(400*s),f=Math.floor(n/h),p=[],m=[];f*h<r;)l=new d.default.GenomeRegion({chrom:this.view.chrom,start:f*h,end:Math.min((f+1)*h,this.view.max_high)}),u=this.draw_helper(l,o,e),p.push(u),t.when(u).then(function(t){m.push(t)}),f+=1;i||this.tiles_div.children(".remove").removeClass("remove").remove();var g=this;t.when.apply(t,p).then(function(){g.tiles_div.children(".remove").remove(),m=c.filter(m,function(t){return null!==t}),0!==m.length&&g.postdraw_actions(m,a,o,i)})}},_add_yaxis_label:function(e,i){var n=this,r="max"===e?"top":"bottom",o="max"===e?"max":"min",s="max"===e?"max_value":"min_value",l=this.container_div.find(".yaxislabel."+r),u=a(n.config.get_value(s),1);i=i||function(){n.request_draw({clear_tile_cache:!0})},0!==l.length?l.text(u):(l=t("<div/>").text(u).make_text_editable({num_cols:12,on_finish:function(e){t(".tooltip").remove(),n.config.set_value(s,a(e,1)),i()},help_text:"Set "+o+" value"}).addClass("yaxislabel "+r).css("color",this.config.get_value("label_color")),this.container_div.prepend(l))},postdraw_actions:function(t,e,i,n){if(c.filter(t,function(t){return t instanceof W}).length>0){this.max_height_px=0;var r=this;c.each(t,function(t){t instanceof W||(t.html_elt.remove(),r.draw_helper(t.region,i,{force:!0,mode:"Coverage"}))}),r._add_yaxis_label("max")}else this.container_div.find(".yaxislabel").remove(),c.find(t,function(t){return t.has_icons})&&c.each(t,function(t){t.has_icons||t.html_elt.css("padding-top",20)})},get_mode:function(t){return this.mode},update_auto_mode:function(t){},_get_drawables:function(){return[this]},draw_helper:function(e,i,n){n||(n={});var r=n.force,a=n.mode||this.mode,o=1/i,s=this,l=this._get_drawables(),u=this._gen_tile_cache_key(i,e),h=r?void 0:s.tile_cache.get_elt(u);if(h)return function(t){return t&&"track"in t}(h)&&s.show_tile(h,i),h;if(!1===n.data_fetch)return null;var d=function(){var t=c.find(I,function(t){return t===a})?"Coverage":a,i=c.map(l,function(i){return i.data_manager.get_data(e,t,o,s.data_url_extra_params)});return view.reference_track&&i.push(view.reference_track.data_manager.get_data(e,a,o,view.reference_track.data_url_extra_params)),i},f=t.Deferred();return s.tile_cache.set_elt(u,f),t.when.apply(t,d()).then(function(){var r,a=d(),o=a;if(c.find(a,function(t){return g.default.is_deferred(t)}))return s.tile_cache.set_elt(u,void 0),void t.when(s.draw_helper(e,i,n)).then(function(t){f.resolve(t)});view.reference_track&&(r=view.reference_track.data_manager.subset_entry(a.pop(),e));var h=[],p=[];c.each(l,function(t,e){var n=t.mode,r=o[e];"Auto"===n&&(n=t.get_mode(r),t.update_auto_mode(n)),h.push(n),p.push(t.get_canvas_height(r,n,i,b))});var m,v=s.view.canvas_manager.new_canvas(),_=e.get("start"),y=e.get("end"),b=Math.ceil((y-_)*i)+s.left_offset,w=c.max(p);v.width=b,v.height=n.height||w;var x=v.getContext("2d");x.translate(s.left_offset,0),l.length>1&&(x.globalAlpha=.5,x.globalCompositeOperation="source-over"),c.each(l,function(t,n){m=t.draw_tile(o[n],x,h[n],e,i,r)}),void 0!==m&&(s.tile_cache.set_elt(u,m),s.show_tile(m,i)),f.resolve(m)}),f},get_canvas_height:function(t,e,i,n){return this.visible_height_px},_draw_line_track_tile:function(t,e,i,n,r){-1!==[void 0,null].indexOf(this.config.get_value("min_value"))&&this.config.set_value("min_value",0),-1!==[void 0,null,0].indexOf(this.config.get_value("max_value"))&&this.config.set_value("max_value",c.max(c.map(t.data,function(t){return t[1]}))||0);var a=e.canvas;return new b.default.LinePainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new W(this,n,r,a,t.data)},draw_tile:function(t,e,i,n,r,a){},show_tile:function(t,e){var i=t.html_elt;t.predisplay_actions();var n=Math.round((t.low-(this.is_overview?this.view.max_low:this.view.low))*e);this.left_offset&&(n-=this.left_offset),i.css("left",n),i.hasClass("remove")?i.removeClass("remove"):this.tiles_div.append(i),i.css("height","auto"),this.max_height_px=Math.max(this.max_height_px,i.height()-2),i.parent().children().css("height",this.max_height_px+"px");var r=this.max_height_px;0!==this.visible_height_px&&(r=Math.min(this.max_height_px,this.visible_height_px)),this.tiles_div.css("height",r+"px")},tool_region_and_parameters_str:function(t){var e=this;return" - region=["+(void 0!==t?t.toString():"all")+"], parameters=["+c.values(e.tool.get_inputs_dict()).join(", ")+"]"},data_and_mode_compatible:function(t,e){return"Auto"===e||("Coverage"===e?"bigwig"===t.dataset_type:"bigwig"!==t.dataset_type&&"no_detail"!==t.extra_info)},can_subset:function(t){return!t.message&&"no_detail"!==t.extra_info&&("bigwig"!==t.dataset_type||t.data[1][0]-t.data[0][0]==1)},init_for_tool_data:function(){this.data_manager.set("data_type","raw_data"),this.data_query_wait=1e3,this.dataset_check_type="state"}});var J=function(t,e){X.call(this,t,e,{resize:!1,header:!1}),this.container_div.addClass("label-track")};$(J.prototype,X.prototype,{init:function(){this.enabled=!0},predraw_init:function(){},_draw:function(e){for(var i=this.view,n=i.high-i.low,r=Math.floor(Math.pow(10,Math.floor(Math.log(n)/Math.log(10)))),a=Math.floor(i.low/r)*r,o=this.view.container.width(),s=t("<div/>").addClass("label-container");a<i.high;){var l=Math.floor((a-i.low)/n*o);s.append(t("<div/>").addClass("pos-label").text(g.default.commatize(a)).css({left:l})),a+=r}this.content_div.children(":first").remove(),this.content_div.append(s)}});var K=function(t,e,i){if(Y.call(this,t,e,i),this.drawables=[],"drawables"in i){for(var n,r=0;r<i.drawables.length;r++)n=i.drawables[r],this.drawables[r]=at(n,t,null),n.left_offset>this.left_offset&&(this.left_offset=n.left_offset);this.enabled=!0}c.each(this.drawables,function(t){(t instanceof et||t instanceof nt)&&t.change_mode("Coverage")}),this.update_icons(),this.obj_type="CompositeTrack"};$(K.prototype,Y.prototype,{display_modes:I,build_config_params:function(){return c.union(N.prototype.config_params,[{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},action_icons_def:[{name:"composite_icon",title:(0,l.default)("Show individual tracks"),css_class:"layers-stack",on_click_fn:function(e){t(".tooltip").remove(),e.show_group()}}].concat(Y.prototype.action_icons_def),to_dict:L.prototype.to_dict,add_drawable:L.prototype.add_drawable,unpack_drawables:L.prototype.unpack_drawables,config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},on_resize:function(){var t=this.visible_height_px;c.each(this.drawables,function(e){e.visible_height_px=t}),X.prototype.on_resize.call(this)},change_mode:function(t){Y.prototype.change_mode.call(this,t);for(var e=0;e<this.drawables.length;e++)this.drawables[e].change_mode(t)},init:function(){for(var e=[],i=0;i<this.drawables.length;i++)e.push(this.drawables[i].init());var n=this;t.when.apply(t,e).then(function(){n.enabled=!0,n.request_draw()})},update_icons:function(){this.action_icons.filters_icon.hide(),this.action_icons.tools_icon.hide(),this.action_icons.param_space_viz_icon.hide()},can_draw:N.prototype.can_draw,_get_drawables:function(){return this.drawables},show_group:function(){for(var t,e=new z(this.view,this.container,{name:this.config.get_value("name")}),i=0;i<this.drawables.length;i++)t=this.drawables[i],t.update_icons(),e.add_drawable(t),t.container=e,e.content_div.append(t.container_div);this.container.replace_drawable(this,e,!0);e.request_draw({clear_tile_cache:!0})},before_draw:function(){var t=c.min(c.map(this.drawables,function(t){return t.config.get_value("min_value")})),e=c.max(c.map(this.drawables,function(t){return t.config.get_value("max_value")}));this.config.set_value("min_value",t),this.config.set_value("max_value",e),c.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)})},update_all_min_max:function(){var t=this.config.get_value("min_value"),e=this.config.get_value("max_value");c.each(this.drawables,function(i){i.config.set_value("min_value",t),i.config.set_value("max_value",e)}),this.request_draw({clear_tile_cache:!0})},postdraw_actions:function(t,e,i,n){var r,a=-1;for(r=0;r<t.length;r++){var o=t[r].html_elt.find("canvas").height();o>a&&(a=o)}for(r=0;r<t.length;r++){var s=t[r];s.html_elt.find("canvas").height()!==a&&(this.draw_helper(s.region,i,{force:!0,height:a}),s.html_elt.remove())}var l=this,u=function(){l.update_all_min_max()};this._add_yaxis_label("min",u),this._add_yaxis_label("max",u)}});var Q=function(t){Y.call(this,t,{content_div:t.top_labeltrack},{resize:!1,header:!1}),this.left_offset=t.canvas_manager.char_width_px,this.container_div.addClass("reference-track"),this.data_url=Galaxy.root+"api/genomes/"+this.view.dbkey,this.data_url_extra_params={reference:!0},this.data_manager=new d.default.GenomeReferenceDataManager({data_url:this.data_url,can_subset:this.can_subset}),this.hide_contents()};$(Q.prototype,N.prototype,Y.prototype,{build_config_params:function(){return c.union(N.prototype.config_params,[{key:"height",type:"int",default_value:13,hidden:!0}])},init:function(){this.data_manager.clear(),this.enabled=!0},predraw_init:function(){},can_draw:N.prototype.can_draw,draw_helper:function(t,e,i){var n,r=this.tiles_div.is(":visible"),a=null;return e>this.view.canvas_manager.char_width_px?(this.tiles_div.show(),n=!0,a=Y.prototype.draw_helper.call(this,t,e,i)):(n=!1,this.tiles_div.hide()),r!==n&&this.view.resize_viewport(),a},can_subset:function(t){return!0},draw_tile:function(t,e,i,n,r){var a=this.data_manager.subset_entry(t,n),o=a.data,s=e.canvas;e.font=e.canvas.manager.default_font,e.textAlign="center";for(var l=0,u=o.length;l<u;l++)e.fillStyle=this.view.get_base_color(o[l]),e.fillText(o[l],Math.floor(l*r),10);return new U(this,n,r,s,a)}});var Z=function(e,i,n){this.mode="Histogram",Y.call(this,e,i,n),this.left_offset=30;var r=this;t.when(o(Galaxy.root+"datasets/"+this.dataset.id+"/display")).then(function(t){t&&(r.data_manager=new O.default.BBIDataManager({dataset:r.dataset}))})};$(Z.prototype,N.prototype,Y.prototype,{display_modes:I,build_config_params:function(){return c.union(N.prototype.config_params,[{key:"color",label:"Color",type:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:void 0},{key:"max_value",label:"Max Value",type:"float",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:30,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},before_draw:function(){},draw_tile:function(t,e,i,n,r){return this._draw_line_track_tile(t,e,i,n,r)},can_subset:function(t){return t.data[1][0]-t.data[0][0]==1},postdraw_actions:function(t,e,i,n){this._add_yaxis_label("max"),this._add_yaxis_label("min")}});var tt=function(t,e,i){this.mode="Heatmap",Y.call(this,t,e,i)};$(tt.prototype,N.prototype,Y.prototype,{display_modes:["Heatmap"],build_config_params:function(){return c.union(N.prototype.config_params,[{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"min_value",label:"Min Value",type:"int",default_value:void 0},{key:"max_value",label:"Max Value",type:"int",default_value:void 0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:500,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},predraw_init:function(){var e=this;return t.getJSON(e.dataset.url(),{data_type:"data",stats:!0,chrom:e.view.chrom,low:0,high:e.view.max_high,hda_ldda:e.dataset.get("hda_ldda")},function(t){t.data})},draw_tile:function(t,e,i,n,r){var a=e.canvas;return new b.default.DiagonalHeatmapPainter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i).draw(e,a.width,a.height,r),new U(this,n,r,a,t.data)}});var et=function(t,e,i){Y.call(this,t,e,i),this.container_div.addClass("feature-track"),this.summary_draw_height=30,this.slotters={},this.start_end_dct={},this.left_offset=200,this.set_painter_from_config()};$(et.prototype,N.prototype,Y.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return c.union(N.prototype.config_params,[{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0,help:"Show the number of items in each bin when drawing summary histogram"},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.set_painter_from_config(),this.request_draw({clear_tile_cache:!0})},set_painter_from_config:function(){"arcs"===this.config.get_value("connector_style")?this.painter=b.default.ArcLinkedFeaturePainter:this.painter=b.default.LinkedFeaturePainter},postdraw_actions:function(e,i,n,r){Y.prototype.postdraw_actions.call(this,e,i,n,r);var a,o=this;if(0===c.filter(e,function(t){return t instanceof W}).length){var s={};c.each(c.pluck(e,"incomplete_features"),function(t){c.each(t,function(t){s[t[0]]=t})});var l=this;c.each(e,function(e){var i=c.omit(s,c.map(e.incomplete_features,function(t){return t[0]}));if(i=c.omit(i,c.keys(e.other_tiles_features_drawn)),0!==c.size(i)){var n={data:c.values(i)},r=l.view.canvas_manager.new_canvas(),a=r.getContext("2d");r.height=Math.max(e.canvas.height,l.get_canvas_height(n,e.mode,e.w_scale,100)),r.width=e.canvas.width,a.drawImage(e.canvas,0,0),a.translate(o.left_offset,0);var u=l.draw_tile(n,a,e.mode,e.region,e.w_scale,e.seq_data);t(e.canvas).replaceWith(t(u.canvas)),e.canvas=r,c.extend(e.other_tiles_features_drawn,s)}})}if(o.filters_manager){var u,h=o.filters_manager.filters;for(u=0;u<h.length;u++)h[u].update_ui_elt();var d,f,p=!1;for(a=0;a<e.length;a++)if(e[a].data.length)for(d=e[a].data[0],u=0;u<h.length;u++)if(f=h[u],f.applies_to(d)&&f.min!==f.max){p=!0;break}o.filters_available!==p&&(o.filters_available=p,o.filters_available||o.filters_manager.hide(),o.update_icons())}if(e[0]instanceof G){var m=!0;for(a=0;a<e.length;a++)if(!e[a].all_slotted){m=!1;break}this.action_icons.show_more_rows_icon.toggle(!m)}else this.action_icons.show_more_rows_icon.hide()},update_auto_mode:function(t){"Auto"===this.mode&&("no_detail"===t&&(t="feature spans"),this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+t+")"))},incremental_slots:function(t,e,i){var n=this.view.canvas_manager.dummy_context,r=this.slotters[t];return r&&r.mode===i||(r=new _.default.FeatureSlotter(t,i,100,function(t){return n.measureText(t)}),this.slotters[t]=r),r.slot_features(e)},get_mode:function(t){return"no_detail"===t.extra_info||this.is_overview?"no_detail":this.view.high-this.view.low>12e3?"Squish":"Pack"},get_canvas_height:function(t,e,i,n){if("Coverage"===e||"bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.incremental_slots(i,t.data,e),a=new this.painter(null,null,null,this.config.to_key_value_dict(),e);return Math.max(this.min_height_px,a.get_required_height(r,n))},draw_tile:function(t,e,i,n,r,a,o){var s=this,l=e.canvas,u=n.get("start"),c=n.get("end"),h=this.left_offset;if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,i,n,r);var d=[],f=this.slotters[r].slots,p=!0;if(t.data)for(var m=this.filters_manager.filters,g=0,v=t.data.length;g<v;g++){for(var _,y=t.data[g],b=!1,w=0,x=m.length;w<x;w++)if(_=m[w],_.update_attrs(y),!_.keep(y)){b=!0;break}b||(d.push(y),y[0]in f||(p=!1))}var C=this.filters_manager.alpha_filter?new V(this.filters_manager.alpha_filter):null,k=this.filters_manager.height_filter?new V(this.filters_manager.height_filter):null,S=new this.painter(d,u,c,this.config.to_key_value_dict(),i,C,k,a,function(t){return s.view.get_base_color(t)}),T=null;if(e.fillStyle=this.config.get_value("block_color"),e.font=e.canvas.manager.default_font,e.textAlign="right",t.data){var A=S.draw(e,l.width,l.height,r,f);T=A.feature_mapper,incomplete_features=A.incomplete_features,T.translation=-h}return o?void 0:new G(s,n,r,l,t.data,i,t.message,p,T,incomplete_features,a)}});var it=function(t,e,i){Y.call(this,t,e,i),this.painter=b.default.VariantPainter,this.summary_draw_height=30,this.left_offset=30};$(it.prototype,N.prototype,Y.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],build_config_params:function(){return c.union(N.prototype.config_params,[{key:"color",label:"Histogram color",type:"color"},{key:"show_sample_data",label:"Show sample data",type:"bool",default_value:!0},{key:"show_labels",label:"Show summary and sample labels",type:"bool",default_value:!0},{key:"summary_height",label:"Locus summary height",type:"float",default_value:20},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})},draw_tile:function(t,e,i,n,r){if("bigwig"===t.dataset_type)return this._draw_line_track_tile(t,e,"Histogram",n,r);var a=this.view;return new this.painter(t.data,n.get("start"),n.get("end"),this.config.to_key_value_dict(),i,function(t){return a.get_base_color(t)}).draw(e,e.canvas.width,e.canvas.height,r),new U(this,n,r,e.canvas,t.data)},get_canvas_height:function(t,e,i,n){if("bigwig"===t.dataset_type)return this.summary_draw_height;var r=this.dataset.get_metadata("sample_names")?this.dataset.get_metadata("sample_names").length:0;return 0===r&&0!==t.data.length&&(r=t.data[0][7].match(/,/g),r=null===r?1:r.length+1),new this.painter(null,null,null,this.config.to_key_value_dict(),e).get_required_height(r)},predraw_init:function(){var t=[X.prototype.predraw_init.call(this)];return this.dataset.get_metadata("sample_names")||t.push(this.dataset.fetch()),t},postdraw_actions:function(e,i,n,r){Y.prototype.postdraw_actions.call(this,e,i,n,r);var a=c.filter(e,function(t){return t instanceof W}),o=this.dataset.get_metadata("sample_names");if(0===a.length&&this.config.get_value("show_labels")&&o&&o.length>1){var s;if(0===this.container_div.find(".yaxislabel.variant").length&&(s=this.config.get_value("summary_height")/2,this.tiles_div.prepend(t("<div/>").text("Summary").addClass("yaxislabel variant top").css({"font-size":s+"px",top:(this.config.get_value("summary_height")-s)/2+"px"})),this.config.get_value("show_sample_data"))){var l=o.join("<br/>");this.tiles_div.prepend(t("<div/>").html(l).addClass("yaxislabel variant top sample").css({top:this.config.get_value("summary_height")}))}s=("Squish"===this.mode?5:10)+"px",t(this.tiles_div).find(".sample").css({"font-size":s,"line-height":s}),t(this.tiles_div).find(".yaxislabel").css("color",this.config.get_value("label_color"))}else this.container_div.find(".yaxislabel.variant").remove()}});var nt=function(t,e,i){et.call(this,t,e,i),this.painter=b.default.ReadPainter,this.update_icons()};$(nt.prototype,N.prototype,Y.prototype,et.prototype,{build_config_params:function(){return c.union(N.prototype.config_params,[{key:"block_color",label:"Histogram color",type:"color"},{key:"detail_block_color",label:"Sense strand block color",type:"color",default_value:"#AAAAAA"},{key:"reverse_strand_color",label:"Antisense strand block color",type:"color",default_value:"#DDDDDD"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:!1},{key:"show_differences",label:"Show differences only",type:"bool",default_value:!0},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:!0},{key:"mode",type:"string",default_value:this.mode,hidden:!0},{key:"min_value",label:"Histogram minimum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:void 0,help:"clear value to set automatically"},{key:"height",type:"int",default_value:0,hidden:!0}])},config_onchange:function(){this.set_name(this.config.get_value("name")),this.request_draw({clear_tile_cache:!0})}});var rt={CompositeTrack:K,DrawableGroup:z,DiagonalHeatmapTrack:tt,FeatureTrack:et,LineTrack:Z,ReadTrack:nt,VariantTrack:it,VcfTrack:it},at=function(t,e,i){if("copy"in t)return t.copy(i);var n=t.obj_type;return n||(n=t.track_type),new rt[n](e,i,t)};e.default={TracksterView:H,DrawableGroup:z,LineTrack:Z,FeatureTrack:et,DiagonalHeatmapTrack:tt,ReadTrack:nt,VariantTrack:it,CompositeTrack:K,object_from_template:at}}).call(e,i(0),i(2))},function(t,e,i){"use strict";(function(t,n){Object.defineProperty(e,"__esModule",{value:!0});var r=i(1),a=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(r),o=t.View.extend({className:"track-header",initialize:function(){this.model.config.get("name").on("change:value",this.update_name,this),this.render()},render:function(){this.$el.append(n("<div/>").addClass(this.model.drag_handle_class)),this.$el.append(n("<div/>").addClass("track-name").text(this.model.config.get_value("name"))),this.action_icons={},this.render_action_icons(),this.$el.dblclick(function(t){t.stopPropagation()}),this.$el.append(n("<div style='clear: both'/>"))},update_name:function(){this.$el.find(".track-name").text(this.model.config.get_value("name"))},render_action_icons:function(){var t=this;this.icons_div=n("<div/>").addClass("track-icons").hide().appendTo(this.$el),a.each(this.model.action_icons_def,function(e){t.add_action_icon(e.name,e.title,e.css_class,e.on_click_fn,e.prepend,e.hide)}),this.set_display_modes(this.model.display_modes)},add_action_icon:function(t,e,i,r,a,o){var s=this;this.action_icons[t]=n("<a/>").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(function(){r(s.model)}).appendTo(this.icons_div),o&&this.action_icons[t].hide()},set_display_modes:function(t,e){if(t){this.model.display_modes=t,this.model.mode=e||this.model.config.get_value("mode")||this.model.display_modes[0],this.action_icons.mode_icon.attr("title","Set display mode (now: "+this.mode+")");for(var i=this.model,n={},r=0,a=i.display_modes.length;r<a;r++){var o=i.display_modes[r];n[o]=function(t){return function(){i.change_mode(t)}}(o)}make_popupmenu(this.action_icons.mode_icon,n)}}});e.default={TrackHeaderView:o}}).call(e,i(2),i(0))},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=r.extend,o=function(t,e){this.slot=t,this.feature=e},s=function(t,e,i,n){this.slots={},this.start_end_dct={},this.w_scale=t,this.mode=e,this.include_label="Pack"===e,this.max_rows=i,this.measureText=n};a(s.prototype,{_get_draw_coords:function(t){var e=Math.floor(t[1]*this.w_scale),i=Math.ceil(t[2]*this.w_scale),n=t[3];if(void 0!==n&&this.include_label){var r=this.measureText(n).width+7;e-r>=0?(e-=r,"left"):(i+=r,"right")}return[e,i]},_find_slot:function(t){for(var e=t[0],i=t[1],n=0;n<=this.max_rows;n++){var r=!1,a=this.start_end_dct[n];if(void 0!==a)for(var o=0,s=a.length;o<s;o++){var l=a[o];if(i>l[0]&&e<l[1]){r=!0;break}}if(!r)return n}return-1},slot_features:function(t){for(var e,i,n=this.start_end_dct,r=[],a=0,s=0,l=t.length;s<l;s++){e=t[s],i=e[0];var u=this.slots[i];if(u){if(e[1]<u.feature[1]||u.feature[2]<e[2])for(var c=this._get_draw_coords(u.feature),h=this._get_draw_coords(e),d=this.start_end_dct[u.slot],f=0;f<d.length;f++){var p=d[f];p[0]===c[0]&&p[1]===c[1]&&(d[f]=h)}a=Math.max(a,this.slots[i].slot)}else r.push(s)}for(var s=0,l=r.length;s<l;s++){e=t[r[s]],i=e[0];var m=this._get_draw_coords(e),g=this._find_slot(m);g>=0&&(void 0===n[g]&&(n[g]=[]),n[g].push(m),this.slots[i]=new o(g,e),a=Math.max(a,g))}return a+1}}),e.default={FeatureSlotter:s}},function(t,e,i){"use strict";Object.defineProperty(e,"__esModule",{value:!0});var n=i(1),r=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(n),a=function(t,e){var i=t[0],n=t[1],r=e[0],a=e[1];return i<r?n<=r?1001:n<=a?1003:1002:i>a?1006:n<=a?1005:1004},o=function(t,e){var i=a(t,e);return 1001!==i&&1006!==i},s=function(t,e,i,n,r,a){void 0===a&&(a=4);var o,s=n-e,l=r-i,u=Math.floor(Math.sqrt(s*s+l*l)/a),c=s/u,h=l/u;for(o=0;o<u;o++,e+=c,i+=h)o%2==0&&t.fillRect(e,i,a,1)},l=function(t,e,i,n){var r=e-n/2,a=e+n/2,o=i-Math.sqrt(3*n/2);t.beginPath(),t.moveTo(r,o),t.lineTo(a,o),t.lineTo(e,i),t.lineTo(r,o),t.strokeStyle=this.fillStyle,t.fill(),t.stroke(),t.closePath()},u=function(t){this.default_val=t||1};u.prototype.gen_val=function(t){return this.default_val};var c=function(t){this.incomplete_features=t.incomplete_features,this.feature_mapper=t.feature_mapper},h=function(t,e,i,n,a){this.data=t,this.view_start=e,this.view_end=i,this.prefs=r.extend({},this.default_prefs,n),this.mode=a};h.prototype.default_prefs={},h.prototype.draw=function(t,e,i,n){},h.prototype.get_start_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,-.5)},h.prototype.get_end_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,.5)},h.prototype.get_draw_pos=function(t,e){return this._chrom_pos_to_draw_pos(t,e,0)},h.prototype._chrom_pos_to_draw_pos=function(t,e,i){return Math.floor(e*(Math.max(0,t-this.view_start)+i))};var d=function(t,e,i,n,r){h.call(this,t,e,i,n,r)};d.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Histogram",color:"#000",overflow_color:"#F66"},d.prototype.draw=function(t,e,i,n){var a=!1,o=this.prefs.min_value,s=this.prefs.max_value,l=s-o,u=i,c=this.view_start,h=this.mode,d=this.data;t.save();var f=Math.round(i+o/l*i);"Intensity"!==h&&(t.fillStyle="#aaa",t.fillRect(0,f,e,1)),t.beginPath();var p,m,g;g=d.length>1?r.map(d.slice(0,-1),function(t,e){return Math.ceil((d[e+1][0]-d[e][0])*n)}):[10];for(var v,_=this.prefs.block_color||this.prefs.color,y=parseInt(_.slice(1),16),b=(16711680&y)>>16,w=(65280&y)>>8,x=255&y,C=!1,k=!1,S=0,T=d.length;S<T;S++)if(t.fillStyle=t.strokeStyle=_,C=k=!1,v=g[S],p=Math.floor((d[S][0]-c-.5)*n),null!==(m=d[S][1])){if(m<o?(k=!0,m=o):m>s&&(C=!0,m=s),"Histogram"===h)m=Math.round(m/l*u),t.fillRect(p,f,v,-m);else if("Intensity"===h){var A=(m-o)/l,M=Math.round(b+(255-b)*(1-A)),E=Math.round(w+(255-w)*(1-A)),O=Math.round(x+(255-x)*(1-A));t.fillStyle="rgb("+M+","+E+","+O+")",t.fillRect(p,0,v,u)}else m=Math.round(u-(m-o)/l*u),a?t.lineTo(p,m):(a=!0,"Filled"===h?(t.moveTo(p,u),t.lineTo(p,m)):t.moveTo(p,m));if(t.fillStyle=this.prefs.overflow_color,C||k){var $;"Histogram"===h||"Intensity"===h?$=v:(p-=2,$=4),C&&t.fillRect(p,0,$,3),k&&t.fillRect(p,u-3,$,3)}t.fillStyle=_}else a&&"Filled"===h&&t.lineTo(p,u),a=!1;"Filled"===h?(a&&(t.lineTo(p,f),t.lineTo(0,f)),t.fill()):t.stroke(),t.restore()};var f=function(t){this.feature_positions={},this.slot_height=t,this.translation=0,this.y_translation=0};f.prototype.map_feature_data=function(t,e,i,n){this.feature_positions[e]||(this.feature_positions[e]=[]),this.feature_positions[e].push({data:t,x_start:i,x_end:n})},f.prototype.get_feature_data=function(t,e){var i,n=Math.floor((e-this.y_translation)/this.slot_height);if(!this.feature_positions[n])return null;t+=this.translation;for(var r=0;r<this.feature_positions[n].length;r++)if(i=this.feature_positions[n][r],t>=i.x_start&&t<=i.x_end)return i.data};var p=function(t,e,i,n,r,a,o){h.call(this,t,e,i,n,r),this.alpha_scaler=a||new u,this.height_scaler=o||new u,this.max_label_length=200};p.prototype.default_prefs={block_color:"#FFF",connector_color:"#FFF"},r.extend(p.prototype,{get_required_height:function(t,e){var i=this.get_row_height(),n=i,r=this.mode;return"no_detail"!==r&&"Squish"!==r&&"Pack"!==r||(i=t*n),i+this.get_top_padding(e)},get_top_padding:function(t){return 0},draw:function(t,e,i,n,r){var a=this.data,o=this.view_start,s=this.view_end;t.save(),t.fillStyle=this.prefs.block_color,t.textAlign="right";for(var l,u=this.get_row_height(),h=new f(u),d=[],p=0,m=a.length;p<m;p++){var g=a[p],v=g[0],_=g[1],y=g[2],b=r&&void 0!==r[v]?r[v].slot:null;("Dense"===this.mode||null!==b)&&_<s&&y>o&&(l=this.draw_element(t,this.mode,g,b,o,s,n,u,e),h.map_feature_data(g,b,l[0],l[1]),(_<o||y>s)&&d.push(g))}return t.restore(),h.y_translation=this.get_top_padding(e),new c({incomplete_features:d,feature_mapper:h})},draw_element:function(t,e,i,n,r,a,o,s,l){return[0,0]}});var m=function(t,e,i,n,r,a,o){p.call(this,t,e,i,n,r,a,o),this.draw_background_connector=!0,this.draw_individual_connectors=!1};r.extend(m.prototype,p.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"no_detail"===t?3:"Squish"===t?5:10},draw_element:function(t,e,i,n,r,a,o,s,l){var u,c=(i[0],i[1]),h=i[2],d=i[3],f=i[4],p=Math.floor(Math.max(0,(c-r-.5)*o)),m=Math.ceil(Math.min(l,Math.max(0,(h-r-.5)*o))),g=p,v=m,u=("Dense"===e?0:0+n)*s+this.get_top_padding(l),_=null,y=null,b=f&&"+"!==f&&"."!==f?this.prefs.reverse_strand_color:this.prefs.block_color,w=this.prefs.label_color;if(t.globalAlpha=this.alpha_scaler.gen_val(i),"Dense"===e&&(n=1),"no_detail"===e)t.fillStyle=b,t.fillRect(p,u+5,m-p,1);else{var x=i[5],C=i[6],k=i[7],S=!0;x&&C&&(_=Math.floor(Math.max(0,(x-r)*o)),y=Math.ceil(Math.min(l,Math.max(0,(C-r)*o))));var T,A;if("Squish"===e?(T=1,A=3,S=!1):(T=5,A=9),k){var M,E;"Squish"===e||"Dense"===e?(M=u+Math.floor(1.5)+1,E=1):f?(M=u,E=A):(M+=2.5,E=1),this.draw_background_connector&&("Squish"===e||"Dense"===e?t.fillStyle="#ccc":f?"+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand")):t.fillStyle="#ccc",t.fillRect(p,M,m-p,E));for(var O=0,$=k.length;O<$;O++){var D,j,P=k[O],R=Math.floor(Math.max(0,(P[0]-r-.5)*o)),I=Math.ceil(Math.min(l,Math.max((P[1]-r-.5)*o)));if(!(R>I)){if(t.fillStyle=b,t.fillRect(R,u+(A-T)/2+1,I-R,T),void 0!==_&&C>x&&!(R>y||I<_)){var N=Math.max(R,_),L=Math.min(I,y);t.fillRect(N,u+1,L-N,A),1===k.length&&"Pack"===e&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),N+14<L&&(N+=2,L-=2),t.fillRect(N,u+1,L-N,A))}this.draw_individual_connectors&&D&&this.draw_connector(t,D,j,R,I,u),D=R,j=I}}if("Pack"===e){t.globalAlpha=1,t.fillStyle="white";var z=this.height_scaler.gen_val(i),H=Math.ceil(A*z),q=Math.round((A-H)/2);1!==z&&(t.fillRect(p,M+1,m-p,q),t.fillRect(p,M+A-q+1,m-p,q))}}else t.fillStyle=b,t.fillRect(p,u+1,m-p,A),f&&S&&("+"===f?t.fillStyle=t.canvas.manager.get_pattern("right_strand_inv"):"-"===f&&(t.fillStyle=t.canvas.manager.get_pattern("left_strand_inv")),t.fillRect(p,u+1,m-p,A));t.globalAlpha=1,d&&"Pack"===e&&c>r&&(t.fillStyle=w,0===r&&p-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,m+2,u+8,this.max_label_length),v+=t.measureText(d).width+2):(t.textAlign="right",t.fillText(d,p-2,u+8,this.max_label_length),g-=t.measureText(d).width+2))}return t.globalAlpha=1,[g,v]}});var g=function(t,e,i,n,r,a,o,s,l){p.call(this,t,e,i,n,r,a,o),this.ref_seq=s?s.data:null,this.base_color_fn=l};r.extend(g.prototype,p.prototype,{get_row_height:function(){var t,e=this.mode;return"Dense"===e?t=10:"Squish"===e?t=5:(t=10,this.prefs.show_insertions&&(t*=2)),t},_parse_cigar:function(t){var e="MIDNSHP=X",i=[[0,0]],n=i[0],a=0,o=r.map(t.match(/[0-9]+[MIDNSHP=X]/g),function(t){var r=parseInt(t.slice(0,-1),10),o=t.slice(-1);return"N"===o?0!==n[1]&&(n=[a+r,a+r],i.push(n)):-1==="ISHP".indexOf(o)&&(n[1]+=r,a+=r),[e.indexOf(o),r]});return{blocks:i,cigar:o}},draw_read:function(t,e,i,n,r,s,u,c,h,d){var f=function(t){return Math.floor(Math.max(0,(t-r-.5)*i))};t.textAlign="center";var p,m,g=[r,s],v=0,_=0,y=Math.round(i/2),b=t.canvas.manager.char_width_px,w="+"===h?this.prefs.detail_block_color:this.prefs.reverse_strand_color,C="Pack"===e,k=C?9:3,S=n+1,T=new x(t,k,i,e),A=[],M=[],E=this._parse_cigar(c);c=E.cigar,A=E.blocks;for(var O=0;O<A.length;O++){var $=A[O];o([u+$[0],u+$[1]],g)&&(p=f(u+$[0]),m=f(u+$[1]),p===m&&(m+=1),t.fillStyle=w,t.fillRect(p,S,m-p,k))}for(var D=0,j=c.length;D<j;D++){var P=c[D],R="MIDNSHP=X"[P[0]],I=P[1],N=u+v;if(p=f(N),m=f(N+I),o([N,N+I],g))switch(p===m&&(m+=1),R){case"H":case"S":case"P":break;case"M":v+=I;break;case"=":case"X":var L="";"X"===R?L=d.slice(_,_+I):this.ref_seq&&(L=this.ref_seq.slice(Math.max(0,N-r),Math.min(N-r+I,s-r)));for(var z=Math.max(N,r),H=0;H<L.length;H++)if(L&&!this.prefs.show_differences||"X"===R){var q=Math.floor(Math.max(0,(z+H-r)*i));t.fillStyle=this.base_color_fn(L[H]),C&&i>b?t.fillText(L[H],q,n+9):i>.05&&t.fillRect(q-y,S,Math.max(1,Math.round(i)),k)}"X"===R&&(_+=I),v+=I;break;case"N":t.fillStyle="#ccc",t.fillRect(p,S+(k-1)/2,m-p,1),v+=I;break;case"D":T.draw_deletion(p,S,I),v+=I;break;case"I":var F=p-y;if(o([N,N+I],g)){var B=d.slice(_,_+I);if(this.prefs.show_insertions){var V=p-(m-p)/2;if(("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b){switch(t.fillStyle="yellow",t.fillRect(V-y,n-9,m-p,9),M[M.length]={type:"triangle",data:[F,n+4,5]},t.fillStyle="#ccc",a([N,N+I],g)){case 1003:B=B.slice(r-N);break;case 1004:B=B.slice(0,N-s);break;case 1005:break;case 1002:B=B.slice(r-N,N-s)}for(var H=0,U=B.length;H<U;H++){var q=Math.floor(Math.max(0,(N+H-r)*i));t.fillText(B[H],q-(m-p)/2,n)}}else t.fillStyle="yellow",t.fillRect(V,n+("Dense"!==this.mode?2:5),m-p,"Dense"!==e?3:9)}else("Pack"===e||"Auto"===this.mode)&&void 0!==d&&i>b&&M.push({type:"text",data:[B.length,F,n+9]})}_+=I}else v=function(t,e,i){return-1!=="M=NXD".indexOf(e)&&(t+=i),t}(v,R,I),_=function(t,e,i){return-1!=="IX".indexOf(e)&&(t+=i),t}(_,R,I)}t.fillStyle="yellow";for(var W,G,X,O=0;O<M.length;O++)W=M[O],G=W.type,X=W.data,"text"===G?(t.save(),t.font="bold "+t.font,t.fillText(X[0],X[1],X[2]),t.restore()):"triangle"===G&&l(t,X[0],X[1],X[2])},draw_element:function(t,e,i,n,r,a,o,l,u){var c=(i[0],i[1]),h=i[2],d=i[3],f=Math.floor(Math.max(-.5*o,(c-r-.5)*o)),p=Math.ceil(Math.min(u,Math.max(0,(h-r-.5)*o))),m=("Dense"===e?0:0+n)*l,g="Pack"===e?9:3;this.prefs.label_color;if(i[5]instanceof Array){var v=!0;i[4][1]>=r&&i[4][0]<=a&&i[4][2]?this.draw_read(t,e,o,m,r,a,i[4][0],i[4][2],i[4][3],i[4][4]):v=!1,i[5][1]>=r&&i[5][0]<=a&&i[5][2]?this.draw_read(t,e,o,m,r,a,i[5][0],i[5][2],i[5][3],i[5][4]):v=!1;var _=Math.ceil(Math.min(u,Math.max(-.5*o,(i[4][1]-r-.5)*o))),y=Math.floor(Math.max(-.5*o,(i[5][0]-r-.5)*o));if(v&&y>_){t.fillStyle="#ccc";var b=m+1+(g-1)/2;s(t,_,b,y,b)}}else this.draw_read(t,e,o,m,r,a,c,i[4],i[5],i[6]);return"Pack"===e&&c>=r&&"."!==d&&(t.fillStyle=this.prefs.label_color,0===r&&f-t.measureText(d).width<0?(t.textAlign="left",t.fillText(d,p+2,m+9,this.max_label_length)):(t.textAlign="right",t.fillText(d,f-2,m+9,this.max_label_length))),[0,0]}});var v=function(t,e,i,n,r,a,o){m.call(this,t,e,i,n,r,a,o),this.longest_feature_length=this.calculate_longest_feature_length(),this.draw_background_connector=!1,this.draw_individual_connectors=!0};r.extend(v.prototype,p.prototype,m.prototype,{calculate_longest_feature_length:function(){for(var t=0,e=0,i=this.data.length;e<i;e++){var n=this.data[e],r=n[1],a=n[2];t=Math.max(t,a-r)}return t},get_top_padding:function(t){var e=this.view_end-this.view_start,i=t/e;return Math.min(128,Math.ceil(this.longest_feature_length/2*i))},draw_connector:function(t,e,i,n,r,a){var o=(i+n)/2,s=n-o;Math.PI;s>0&&(t.beginPath(),t.arc(o,a,n-o,Math.PI,0),t.stroke())}});var _=function(t,e){Array.isArray(t)?this.rgb=t:6==t.length?this.rgb=t.match(/.{2}/g).map(function(t){return parseInt(t,16)}):7==t.length?this.rgb=t.substring(1,7).match(/.{2}/g).map(function(t){return parseInt(t,16)}):this.rgb=t.split("").map(function(t){return parseInt(t+t,16)}),this.alpha="number"==typeof e?e:1};_.prototype={eval:function(){return this},toCSS:function(){return this.alpha<1?"rgba("+this.rgb.map(function(t){return Math.round(t)}).concat(this.alpha).join(", ")+")":"#"+this.rgb.map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},toHSL:function(){var t,e,i=this.rgb[0]/255,n=this.rgb[1]/255,r=this.rgb[2]/255,a=this.alpha,o=Math.max(i,n,r),s=Math.min(i,n,r),l=(o+s)/2,u=o-s;if(o===s)t=e=0;else{switch(e=l>.5?u/(2-o-s):u/(o+s),o){case i:t=(n-r)/u+(n<r?6:0);break;case n:t=(r-i)/u+2;break;case r:t=(i-n)/u+4}t/=6}return{h:360*t,s:e,l:l,a:a}},toARGB:function(){return"#"+[Math.round(255*this.alpha)].concat(this.rgb).map(function(t){return t=Math.round(t),t=(t>255?255:t<0?0:t).toString(16),1===t.length?"0"+t:t}).join("")},mix:function(t,e){var i=this,n=e,r=2*n-1,a=i.toHSL().a-t.toHSL().a,o=((r*a==-1?r:(r+a)/(1+r*a))+1)/2,s=1-o,l=[i.rgb[0]*o+t.rgb[0]*s,i.rgb[1]*o+t.rgb[1]*s,i.rgb[2]*o+t.rgb[2]*s],u=i.alpha*n+t.alpha*(1-n);return new _(l,u)}};var y=function(t,e,i,n){this.start_color=new _(t),this.end_color=new _(e),this.start_value=i,this.end_value=n,this.value_range=n-i};y.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t=(t-this.start_value)/this.value_range,this.start_color.mix(this.end_color,1-t).toCSS()};var b=function(t,e,i,n,r){this.positive_ramp=new y(e,i,0,r),this.negative_ramp=new y(e,t,0,-n),this.start_value=n,this.end_value=r};b.prototype.map_value=function(t){return t=Math.max(t,this.start_value),t=Math.min(t,this.end_value),t>=0?this.positive_ramp.map_value(t):this.negative_ramp.map_value(-t)};var w=function(t,e,i,n,r){h.call(this,t,e,i,n,r);var a,o;if(void 0===this.prefs.min_value){var s=1/0;for(a=0,o=this.data.length;a<o;a++)s=Math.min(s,this.data[a][6]);this.prefs.min_value=s}if(void 0===this.prefs.max_value){var l=-1/0;for(a=0,o=this.data.length;a<o;a++)l=Math.max(l,this.data[a][6]);this.prefs.max_value=l}};w.prototype.default_prefs={min_value:void 0,max_value:void 0,mode:"Heatmap",pos_color:"#FF8C00",neg_color:"#4169E1"},w.prototype.draw=function(t,e,i,n){var r,a,o,s,l,u,c=this.prefs.min_value,h=this.prefs.max_value,d=this.view_start,f=(this.mode,this.data),p=1/Math.sqrt(2),m=new b(this.prefs.neg_color,"#FFFFFF",this.prefs.pos_color,c,h),g=function(t){return(t-d)*n};t.save(),t.rotate(-45*Math.PI/180),t.scale(p,p);for(var v=0,_=f.length;v<_;v++)r=f[v],a=g(r[1]),o=g(r[2]),s=g(r[4]),l=g(r[5]),u=r[6],t.fillStyle=m.map_value(u),t.fillRect(a,s,o-a,l-s);t.restore()};var x=function(t,e,i,n){this.ctx=t,this.row_height=e,this.px_per_base=i,this.draw_details=("Pack"===n||"Auto"===n)&&i>=t.canvas.manager.char_width_px,this.delete_details_thickness=.2};r.extend(x.prototype,{draw_deletion:function(t,e,i){this.ctx.fillStyle="black";var n=(this.draw_details?this.delete_details_thickness:1)*this.row_height;e+=.5*(this.row_height-n),this.ctx.fillRect(t,e,i*this.px_per_base,n)}});var C=function(t,e,i,n,r,a){h.call(this,t,e,i,n,r),this.base_color_fn=a,this.divider_height=1};r.extend(C.prototype,h.prototype,{get_row_height:function(){var t=this.mode;return"Dense"===t?10:"Squish"===t?5:10},get_required_height:function(t){var e=this.prefs.summary_height;return t>1&&this.prefs.show_sample_data&&(e+=this.divider_height+t*this.get_row_height()),e},draw:function(t,e,i,n){t.save();var a,o,s,l,u,c,h,d,f,p,m,g=function(t,e){var i=t.length,n=e.length,r=0,a=1,o=null;return"-"===e?(o="deletion",a=t.length):0===t.indexOf(e)&&i>n?(o="deletion",a=i-n,r=n):0===e.indexOf(t)&&i<n&&(o="insertion",a=n-i,r=n),null!==o?{type:o,start:r,len:a}:{}},v=Math.max(1,Math.floor(n)),_=this.data.length?this.data[0][7].split(",").length:0,y="Squish"===this.mode?5:10,b=n<.1?y:"Squish"===this.mode?3:9,w=!0,C=new x(t,y,n,this.mode);1===_&&(y=b=n<t.canvas.manager.char_width_px?this.prefs.summary_height:y,C.row_height=y,w=!1),this.prefs.show_sample_data&&w&&(t.fillStyle="#F3F3F3",t.globalAlpha=1,t.fillRect(0,this.prefs.summary_height-this.divider_height,e,this.divider_height)),t.textAlign="center";for(var k=0;k<this.data.length;k++)if(a=this.data[k],o=a[1],s=a[3],l=[a[4].split(",")],u=a[7].split(","),c=a.slice(8),l=r.map(r.flatten(l),function(t){var e={type:"snp",value:t,start:0},i=g(s,t);return r.extend(e,i)}),!(o<this.view_start||o>this.view_end)){if(w)for(t.fillStyle="#999999",t.globalAlpha=1,m=0;m<l.length;m++)for(d=this.get_start_draw_pos(o+l[m].start,n),t.fillRect(d,0,v,this.prefs.summary_height),f=this.prefs.summary_height,m=0;m<l.length;m++){t.fillStyle="deletion"===l[m].type?"black":this.base_color_fn(l[m].value);var S=c/u.length,T=Math.ceil(this.prefs.summary_height*S);t.fillRect(d,f-T,v,T),f-=T}if(this.prefs.show_sample_data)for(f=w?this.prefs.summary_height+this.divider_height:0,m=0;m<u.length;m++,f+=y)if(p=u[m]?u[m].split(/\/|\|/):["0","0"],h=null,p[0]===p[1]?"."===p[0]||"0"!==p[0]&&(h=l[parseInt(p[0],10)-1],t.globalAlpha=1):(h="0"!==p[0]?p[0]:p[1],h=l[parseInt(h,10)-1],t.globalAlpha=.5),h)if(d=this.get_start_draw_pos(o+h.start,n),"snp"===h.type){var A=h.value;t.fillStyle=this.base_color_fn(A),C.draw_details?t.fillText(A,this.get_draw_pos(o,n),f+y):t.fillRect(d,f+1,v,b)}else"deletion"===h.type&&C.draw_deletion(d,f+1,h.len)}t.restore()}}),e.default={Scaler:u,LinePainter:d,LinkedFeaturePainter:m,ReadPainter:g,ArcLinkedFeaturePainter:v,DiagonalHeatmapPainter:w,VariantPainter:C}},function(t,e,i){"use strict";(function(t){Object.defineProperty(e,"__esModule",{value:!0});var n=i(3),r=function(t){return t&&t.__esModule?t:{default:t}}(n),a=i(1),o=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var i in t)Object.prototype.hasOwnProperty.call(t,i)&&(e[i]=t[i]);return e.default=t,e}(a),s=o.extend,l=function(t){this.manager=null,this.name=t.name,this.index=t.index,this.tool_id=t.tool_id,this.tool_exp_name=t.tool_exp_name};s(l.prototype,{to_dict:function(){return{name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name}}});var u=function(e,i,n){return t("<a/>").attr("href","javascript:void(0);").attr("title",e).addClass("icon-button").addClass(i).tooltip().click(n)},c=function(e){l.call(this,e),this.low="low"in e?e.low:-Number.MAX_VALUE,this.high="high"in e?e.high:Number.MAX_VALUE,this.min="min"in e?e.min:Number.MAX_VALUE,this.max="max"in e?e.max:-Number.MAX_VALUE,this.container=null,this.slider=null,this.slider_label=null;var i=this;i.parent_div=t("<div/>").addClass("filter-row slider-row");var n=t("<div/>").addClass("elt-label").appendTo(i.parent_div),r=(t("<span/>").addClass("slider-name").text(i.name+"  ").appendTo(n),t("<span/>").text(this.low+"-"+this.high)),a=t("<span/>").addClass("slider-value").appendTo(n).append("[").append(r).append("]");i.values_span=r;var o=t("<div/>").addClass("slider").appendTo(i.parent_div);i.control_element=t("<div/>").attr("id",i.name+"-filter-control").appendTo(o),i.control_element.slider({range:!0,min:this.min,max:this.max,step:this.get_slider_step(this.min,this.max),values:[this.low,this.high],slide:function(t,e){i.slide(t,e)},change:function(t,e){i.control_element.slider("option","slide").call(i.control_element,t,e)}}),i.slider=i.control_element,i.slider_label=r,function(e,i,n){e.click(function(){var e=i.text(),r=parseFloat(n.slider("option","max")),a=r<=1?4:r<=1e6?r.toString().length:6,o=!1,s=t(this).parents(".slider-row");s.addClass("input"),n.slider("option","values")&&(a=2*a+1,o=!0),i.text(""),t("<input type='text'/>").attr("size",a).attr("maxlength",a).attr("value",e).appendTo(i).focus().select().click(function(t){t.stopPropagation()}).blur(function(){t(this).remove(),i.text(e),s.removeClass("input")}).keyup(function(e){if(27===e.keyCode)t(this).trigger("blur");else if(13===e.keyCode){var i=n.slider("option","min"),r=n.slider("option","max"),a=function(t){return isNaN(t)||t>r||t<i},l=t(this).val();if(o){if(l=l.split("-"),l=[parseFloat(l[0]),parseFloat(l[1])],a(l[0])||a(l[1]))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this)}else if(l=parseFloat(l),a(l))return alert("Parameter value must be in the range ["+i+"-"+r+"]"),t(this);n.slider(o?"values":"value",l),s.removeClass("input")}})})}(a,r,i.control_element);var s=t("<div/>").addClass("display-controls").appendTo(i.parent_div);this.transparency_icon=u("Use filter for data transparency","layer-transparent",function(){i.manager.alpha_filter!==i?(i.manager.alpha_filter=i,i.manager.parent_div.find(".layer-transparent").removeClass("active").hide(),i.transparency_icon.addClass("active").show()):(i.manager.alpha_filter=null,i.transparency_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(s).hide(),this.height_icon=u("Use filter for data height","arrow-resize-090",function(){i.manager.height_filter!==i?(i.manager.height_filter=i,i.manager.parent_div.find(".arrow-resize-090").removeClass("active").hide(),i.height_icon.addClass("active").show()):(i.manager.height_filter=null,i.height_icon.removeClass("active")),i.manager.track.request_draw({force:!0,clear_after:!0})}).appendTo(s).hide(),i.parent_div.hover(function(){i.transparency_icon.show(),i.height_icon.show()},function(){i.manager.alpha_filter!==i&&i.transparency_icon.hide(),i.manager.height_filter!==i&&i.height_icon.hide()}),t("<div style='clear: both;'/>").appendTo(i.parent_div)};s(c.prototype,{to_dict:function(){var t=l.prototype.to_dict.call(this);return s(t,{type:"number",min:this.min,max:this.max,low:this.low,high:this.high})},copy:function(){return new c({name:this.name,index:this.index,tool_id:this.tool_id,tool_exp_name:this.tool_exp_name})},get_slider_step:function(t,e){return e-t<=2?.01:1},slide:function(t,e){var i=e.values;this.values_span.text(i[0]+"-"+i[1]),this.low=i[0],this.high=i[1];var n=this;setTimeout(function(){i[0]===n.low&&i[1]===n.high&&n.manager.track.request_draw({force:!0,clear_after:!0})},25)},applies_to:function(t){return t.length>this.index},_keep_val:function(t){return isNaN(t)||t>=this.low&&t<=this.high},keep:function(t){if(!this.applies_to(t))return!0;var e=t[this.index];if(e instanceof Array){for(var i=!0,n=0;n<e.length;n++)if(!this._keep_val(e[n])){i=!1;break}return i}return this._keep_val(t[this.index])},update_attrs:function(t){var e=!1;if(!this.applies_to(t))return e;var i=t[this.index];i instanceof Array||(i=[i]);for(var n=0;n<i.length;n++){var r=i[n];r<this.min&&(this.min=Math.floor(r),e=!0),r>this.max&&(this.max=Math.ceil(r),e=!0)}return e},update_ui_elt:function(){this.min<this.max?this.parent_div.show():this.parent_div.hide();var t=this.slider.slider("option","min"),e=this.slider.slider("option","max");(this.min<t||this.max>e)&&(this.slider.slider("option","min",this.min),this.slider.slider("option","max",this.max),this.slider.slider("option","step",this.get_slider_step(this.min,this.max)),this.slider.slider("option","values",[this.min,this.max]))}});var h=function(e,i){if(this.track=e,this.alpha_filter=null,this.height_filter=null,this.filters=[],this.parent_div=t("<div/>").addClass("filters").hide(),this.parent_div.bind("drag",function(t){t.stopPropagation()}).click(function(t){t.stopPropagation()}).bind("dblclick",function(t){t.stopPropagation()}).bind("keydown",function(t){t.stopPropagation()}),i&&"filters"in i){for(var n,r=("alpha_filter"in i?i.alpha_filter:null),a=("height_filter"in i?i.height_filter:null),o=i.filters,s=0;s<o.length;s++)"number"===o[s].type?(n=new c(o[s]),this.add_filter(n),n.name===r&&(this.alpha_filter=n,n.transparency_icon.addClass("active").show()),n.name===a&&(this.height_filter=n,n.height_icon.addClass("active").show())):console.log("ERROR: unsupported filter: ",name,type);"visible"in i&&i.visible&&this.parent_div.show()}if(0!==this.filters.length){var l=t("<div/>").addClass("param-row").appendTo(this.parent_div),u=this;t("<input type='submit'/>").attr("value","Run on complete dataset").appendTo(l).click(function(){u.run_on_dataset()})}};s(h.prototype,{show:function(){this.parent_div.show()},hide:function(){this.parent_div.hide()},toggle:function(){this.parent_div.toggle()},visible:function(){return this.parent_div.is(":visible")},to_dict:function(){for(var t,e={},i=[],n=0;n<this.filters.length;n++)t=this.filters[n],i.push(t.to_dict());return e.filters=i,e.alpha_filter=this.alpha_filter?this.alpha_filter.name:null,e.height_filter=this.height_filter?this.height_filter.name:null,e.visible=this.parent_div.is(":visible"),e},copy:function(t){for(var e=new h(t),i=0;i<this.filters.length;i++)e.add_filter(this.filters[i].copy());return e},add_filter:function(t){t.manager=this,this.parent_div.append(t.parent_div),this.filters.push(t)},remove_all:function(){this.filters=[],this.parent_div.children().remove()},init_filters:function(){for(var t=0;t<this.filters.length;t++){this.filters[t].update_ui_elt()}},clear_filters:function(){for(var t=0;t<this.filters.length;t++){var e=this.filters[t];e.slider.slider("option","values",[e.min,e.max])}this.alpha_filter=null,this.height_filter=null,this.parent_div.find(".icon-button").hide()},run_on_dataset:function(){for(var e,i,n=(function(t,e,i){return e in t||(t[e]=i),t[e]}),a={},o=0;o<this.filters.length;o++)e=this.filters[o],e.tool_id&&(e.min!==e.low&&(i=n(a,e.tool_id,[]),i[i.length]=e.tool_exp_name+" >= "+e.low),e.max!==e.high&&(i=n(a,e.tool_id,[]),i[i.length]=e.tool_exp_name+" <= "+e.high));var s=[];for(var l in a)s[s.length]=[l,a[l]];!function e(i,n){var a=n[0],o=a[0],s=a[1],l="("+s.join(") and (")+")",u={cond:l,input:i,target_dataset_id:i,tool_id:o};n=n.slice(1),t.getJSON(run_tool_url,u,function(t){t.error?Galaxy.modal.show({title:(0,r.default)("Filter Dataset"),body:"Error running tool "+o,buttons:{Close:Galaxy.modal.hide()}}):0===n.length?Galaxy.modal.show({title:(0,r.default)("Filtering Dataset"),body:"Filter(s) are running on the complete dataset. Outputs are in dataset's history.",buttons:{Close:Galaxy.modal.hide()}}):e(t.dataset_id,n)})}(this.track.dataset_id,s)}}),e.default={FiltersManager:h,NumberFilter:c}}).call(e,i(0))},function(t,e,i){"use strict";(function(t,n,r,a){function o(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var s=i(4),l=o(s),u=i(6),c=(o(u),i(38)),h=o(c),d=i(154),f=o(d),p=i(155),m=o(p),g=i(156),v=o(g),_=t.View.extend({initialize:function(t,e){this.app=t,this.inputs=e.inputs,this.parameters=new v.default,this.setElement(n("<div/>")),this.render()},render:function(){var t=this;this.$el.empty(),r.each(this.inputs,function(e){t.add(e)})},add:function(t){var e=a.extend(!0,{},t);switch(e.id=t.id=l.default.uid(),this.app.input_list[e.id]=e,e.type){case"conditional":this._addConditional(e);break;case"repeat":this._addRepeat(e);break;case"section":this._addSection(e);break;default:this._addRow(e)}},_addConditional:function(t){var e=this;t.test_param.id=t.id,this.app.model.get("sustain_conditionals")&&(t.test_param.disabled=!0);var i=this._addRow(t.test_param);i.model&&i.model.set("onchange",function(i){var n=e.app.data.matchCase(t,i);for(var r in t.cases){var a=t.cases[r],o=e.$("#"+t.id+"-section-"+r),s=!1;for(var l in a.inputs)if(!a.inputs[l].hidden){s=!0;break}r==n&&s?o.fadeIn("fast"):o.hide()}e.app.trigger("change")});for(var n in t.cases){var r=new _(this.app,{inputs:t.cases[n].inputs});this._append(r.$el.addClass("ui-form-section"),t.id+"-section-"+n)}i.trigger("change")},_addRepeat:function(t){function e(e){var r=t.id+"-section-"+n++,o=new _(i.app,{inputs:e});a.add({id:r,$el:o.$el,ondel:function(){a.del(r),i.app.trigger("change")}})}for(var i=this,n=0,a=new f.default.View({title:t.title||"Repeat",min:t.min,max:t.max,onnew:function(){e(t.inputs),i.app.trigger("change")}}),o=r.size(t.cache),s=0;s<Math.max(Math.max(o,t.min||0),t.default||0);s++)e(s<o?t.cache[s]:t.inputs);this.app.model.get("sustain_repeats")&&a.hideOptions();var l=new m.default(this.app,{label:t.title||t.name,help:t.help,field:a});this._append(l.$el,t.id)},_addSection:function(t){var e=new h.default.View({title:t.title||t.name,cls:"ui-portlet-section",collapsible:!0,collapsible_button:!0,collapsed:!t.expanded});e.append(new _(this.app,{inputs:t.inputs}).$el),e.append(n("<div/>").addClass("ui-form-info").html(t.help)),this.app.on("expand",function(t){e.$("#"+t).length>0&&e.expand()}),this._append(e.$el,t.id)},_addRow:function(t){var e=this,i=t.id;t.onchange=t.onchange||function(){e.app.trigger("change",i)};var n=this.parameters.create(t);this.app.field_list[i]=n;var r=new m.default(this.app,{name:t.name,label:t.hide_label?"":t.label||t.name,value:t.value,text_value:t.text_value,collapsible_value:t.collapsible_value,collapsible_preview:t.collapsible_preview,help:t.help,argument:t.argument,disabled:t.disabled,color:t.color,style:t.style,backdrop:t.backdrop,hidden:t.hidden,fixed:t.fixed,field:n});return this.app.element_list[i]=r,this._append(r.$el,t.id),n},_append:function(t,e){this.$el.append(t.addClass("section-row").attr("id",e))}});e.default={View:_}}).call(e,i(2),i(0),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0}),e.View=void 0;var o=i(3),s=a(o),l=i(4),u=a(l),c=i(38),h=a(c),d=i(6),f=a(d),p=e.View=t.View.extend({initialize:function(t){this.list={},this.options=u.default.merge(t,{title:(0,s.default)("Repeat"),empty_text:"Not available.",max:null,min:null}),this.button_new=new f.default.ButtonIcon({icon:"fa-plus",title:"Insert "+this.options.title,tooltip:"Add new "+this.options.title+" block",cls:"ui-button-icon ui-clear-float form-repeat-add",onclick:function(){t.onnew&&t.onnew()}}),this.setElement(n("<div/>").append(this.$list=n("<div/>")).append(n("<div/>").append(this.button_new.$el)))},size:function(){return r.size(this.list)},add:function(t){if(!t.id||this.list[t.id])return void Galaxy.emit.debug("form-repeat::add()","Duplicate or invalid repeat block id.");var e=new f.default.ButtonIcon({icon:"fa-trash-o",tooltip:(0,s.default)("Delete this repeat block"),cls:"ui-button-icon-plain form-repeat-delete",onclick:function(){t.ondel&&t.ondel()}}),i=new h.default.View({id:t.id,title:(0,s.default)("placeholder"),cls:t.cls||"ui-portlet-repeat",operations:{button_delete:e}});i.append(t.$el),i.$el.addClass("section-row").hide(),this.list[t.id]=i,this.$list.append(i.$el.fadeIn("fast")),this.options.max>0&&this.size()>=this.options.max&&this.button_new.disable(),this._refresh()},del:function(t){if(!this.list[t])return void Galaxy.emit.debug("form-repeat::del()","Invalid repeat block id.");this.$list.find("#"+t).remove(),delete this.list[t],this.button_new.enable(),this._refresh()},delAll:function(){for(var t in this.list)this.del(t)},hideOptions:function(){this.button_new.$el.hide(),r.each(this.list,function(t){t.hideOperation("button_delete")}),r.isEmpty(this.list)&&this.$el.append(n("<div/>").addClass("ui-form-info").html(this.options.empty_text))},_refresh:function(){var t=0;for(var e in this.list){var i=this.list[e];i.title(++t+": "+this.options.title),i[this.size()>this.options.min?"showOperation":"hideOperation"]("button_delete")}}});e.default={View:p}}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,i,n){Object.defineProperty(e,"__esModule",{value:!0}),e.default=t.View.extend({initialize:function(e,i){this.app=e,this.app_options=e.model?e.model.attributes:{},this.field=i&&i.field||new t.View,this.model=i&&i.model||new t.Model({text_enable:this.app_options.text_enable||"Enable",text_disable:this.app_options.text_disable||"Disable",cls_enable:this.app_options.cls_enable||"fa fa-caret-square-o-down",cls_disable:this.app_options.cls_disable||"fa fa-caret-square-o-up",always_refresh:this.app_options.always_refresh}).set(i),this.setElement(this._template()),this.$field=this.$(".ui-form-field"),this.$info=this.$(".ui-form-info"),this.$preview=this.$(".ui-form-preview"),this.$collapsible=this.$(".ui-form-collapsible"),this.$collapsible_text=this.$(".ui-form-collapsible-text"),this.$collapsible_icon=this.$(".ui-form-collapsible-icon"),this.$title=this.$(".ui-form-title"),this.$title_text=this.$(".ui-form-title-text"),this.$error_text=this.$(".ui-form-error-text"),this.$error=this.$(".ui-form-error"),this.$backdrop=this.$(".ui-form-backdrop"),this.$field.prepend(this.field.$el);var n=this.model.get("collapsible_value");this.field.collapsed=void 0!==n&&JSON.stringify(this.model.get("value"))==JSON.stringify(n),this.listenTo(this.model,"change",this.render,this),this.render();var r=this;this.$collapsible.on("click",function(){r.field.collapsed=!r.field.collapsed,e.trigger&&e.trigger("change"),r.render()}),this.field.model&&!this.model.get("always_refresh")&&this.listenTo(this.field.model,"change:value",function(){r.reset()})},backdrop:function(){this.model.set("backdrop",!0)},error:function(t){this.model.set("error_text",t)},reset:function(){!this.model.get("fixed")&&this.model.set("error_text",null)},render:function(){i(".tooltip").hide();var t=this.model.get("help",""),e=this.model.get("argument");e&&-1==t.indexOf("("+e+")")&&(t+=" ("+e+")"),this.$info.html(t),this.$el[this.model.get("hidden")?"hide":"show"](),this.$preview[this.field.collapsed&&this.model.get("collapsible_preview")||this.model.get("disabled")?"show":"hide"]().html(n.escape(this.model.get("text_value")));var r=this.model.get("error_text");if(this.$error[r?"show":"hide"](),this.$el[r?"addClass":"removeClass"]("ui-error"),this.$error_text.html(r),this.$backdrop[this.model.get("backdrop")?"show":"hide"](),this.field.collapsed||this.model.get("disabled")?this.$field.hide():this.$field.show(),this.field.model&&this.field.model.set({color:this.model.get("color"),style:this.model.get("style")}),this.model.get("disabled")||void 0===this.model.get("collapsible_value"))this.$title_text.show().text(this.model.get("label")),this.$collapsible.hide();else{var a=this.field.collapsed?"enable":"disable";this.$title_text.hide(),this.$collapsible.show(),this.$collapsible_text.text(this.model.get("label")),this.$collapsible_icon.removeClass().addClass("icon").addClass(this.model.get("cls_"+a)).attr("data-original-title",this.model.get("text_"+a)).tooltip({placement:"bottom"})}},_template:function(){return i("<div/>").addClass("ui-form-element").append(i("<div/>").addClass("ui-form-error ui-error").append(i("<span/>").addClass("fa fa-arrow-down")).append(i("<span/>").addClass("ui-form-error-text"))).append(i("<div/>").addClass("ui-form-title").append(i("<div/>").addClass("ui-form-collapsible").append(i("<i/>").addClass("ui-form-collapsible-icon")).append(i("<span/>").addClass("ui-form-collapsible-text"))).append(i("<span/>").addClass("ui-form-title-text"))).append(i("<div/>").addClass("ui-form-field").append(i("<span/>").addClass("ui-form-info")).append(i("<div/>").addClass("ui-form-backdrop"))).append(i("<div/>").addClass("ui-form-preview"))}})}).call(e,i(2),i(0),i(1))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(4),s=a(o),l=i(6),u=a(l),c=i(157),h=a(c),d=i(158),f=a(d),p=i(159),m=a(p),g=i(160),v=a(g),_=i(162),y=a(_);e.default=t.Model.extend({types:{text:"_fieldText",password:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider",float:"_fieldSlider",boolean:"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp",upload:"_fieldUpload",genomespacefile:"_fieldGenomeSpace"},create:function(t){var e=this.types[t.type],i="function"==typeof this[e]?this[e].call(this,t):null;return i||(i=t.options?this._fieldSelect(t):this._fieldText(t),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+t.type+").")),void 0===t.value&&(t.value=null),i.value(t.value),i},_fieldData:function(t){return new h.default.View({id:"field-"+t.id,extensions:t.extensions,optional:t.optional,multiple:t.multiple,type:t.type,flavor:t.flavor,data:t.options,onchange:t.onchange})},_fieldSelect:function(t){if(t.is_workflow)return this._fieldText(t);"data_column"==t.type&&(t.error_text="Missing columns in referenced dataset.");var e=t.data;e||(e=[],n.each(t.options,function(t){e.push({label:t[0],value:t[1]})}));var i=u.default.Select;switch(t.display){case"checkboxes":i=u.default.Checkbox;break;case"radio":i=u.default.Radio;break;case"radiobutton":i=u.default.RadioButton}return new i.View({id:"field-"+t.id,data:e,error_text:t.error_text||"No options available",readonly:t.readonly,multiple:t.multiple,optional:t.optional,onchange:t.onchange,individual:t.individual,searchable:"workflow"!==t.flavor})},_fieldDrilldown:function(t){return t.is_workflow?this._fieldText(t):new u.default.Drilldown.View({id:"field-"+t.id,data:t.options,display:t.display,optional:t.optional,onchange:t.onchange})},_fieldText:function(t){if(t.options&&t.data)if(t.area=t.multiple,s.default.isEmpty(t.value))t.value=null;else if(r.isArray(t.value)){var e="";for(var i in t.value){if(e+=String(t.value[i]),!t.multiple)break;e+="\n"}t.value=e}return new u.default.Input({id:"field-"+t.id,type:t.type,area:t.area,readonly:t.readonly,placeholder:t.placeholder,datalist:t.datalist,onchange:t.onchange})},_fieldSlider:function(t){return new u.default.Slider.View({id:"field-"+t.id,precise:"float"==t.type,is_workflow:t.is_workflow,min:t.min,max:t.max,onchange:t.onchange})},_fieldHidden:function(t){return new u.default.Hidden({id:"field-"+t.id,info:t.info})},_fieldBoolean:function(t){return new u.default.RadioButton.View({id:"field-"+t.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:t.onchange})},_fieldColor:function(t){return new y.default({id:"field-"+t.id,onchange:t.onchange})},_fieldLibrary:function(t){return new f.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldFtp:function(t){return new m.default.View({id:"field-"+t.id,optional:t.optional,multiple:t.multiple,onchange:t.onchange})},_fieldGenomeSpace:function(t){var e=this;return new v.default.View({id:"field-"+t.id,onchange:function(){e.app.trigger("change")}})},_fieldUpload:function(t){return new u.default.Upload({id:"field-"+t.id,onchange:t.onchange})}})}).call(e,i(2),i(1),i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(3),s=a(o),l=i(4),u=a(l),c=i(6),h=a(c),d=i(82),f=a(d),p={DISABLED:"disabled",ENABLED:"enabled",LINKED:"linked"},m={data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.LINKED},{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.LINKED}],data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.DISABLED},{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collections"),multiple:!0,batch:p.DISABLED}],data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED}],workflow_data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED}],workflow_data_multiple:[{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.DISABLED}],workflow_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED}],module_data:[{src:"hda",icon:"fa-file-o",tooltip:(0,s.default)("Single dataset"),multiple:!1,batch:p.DISABLED},{src:"hda",icon:"fa-files-o",tooltip:(0,s.default)("Multiple datasets"),multiple:!0,batch:p.ENABLED}],module_data_collection:[{src:"hdca",icon:"fa-folder-o",tooltip:(0,s.default)("Dataset collection"),multiple:!1,batch:p.DISABLED},{src:"hdca",icon:"fa-folder",tooltip:(0,s.default)("Multiple collections"),multiple:!0,batch:p.ENABLED}]},g=t.View.extend({initialize:function(e){var i=this;this.model=e&&e.model||new t.Model({src_labels:{hda:"dataset",hdca:"dataset collection"},pagelimit:100,statustimer:1e3}).set(e),this.setElement(n("<div/>").addClass("ui-select-content")),this.button_product=new h.default.RadioButton.View({value:"false",data:[{icon:"fa fa-chain",value:"false",tooltip:"Linked inputs will be run in matched order with other datasets e.g. use this for matching forward and reverse reads."},{icon:"fa fa-chain-broken",value:"true",tooltip:"Unlinked dataset inputs will be run against *all* other inputs."}]});var r=n("<div/>").addClass("ui-form-info").append(n("<i/>").addClass("fa fa-sitemap")).append(n("<span/>").html("This is a batch mode input field. Separate jobs will be triggered for each dataset selection."));this.$batch={linked:r.clone(),enabled:r.clone().append(n("<div/>").append(n("<div/>").addClass("ui-form-title").html("Batch options:")).append(this.button_product.$el)).append(n("<div/>").css("clear","both"))},this.$el.on("dragenter",function(t){this.lastenter=t.target,i.$el.addClass("ui-dragover")}).on("dragover",function(t){t.preventDefault()}).on("dragleave",function(t){this.lastenter===t.target&&i.$el.removeClass("ui-dragover")}).on("drop",function(t){i._handleDrop(t)}),this.history={},this.listenTo(this.model,"change:data",this._changeData,this),this.listenTo(this.model,"change:wait",this._changeWait,this),this.listenTo(this.model,"change:current",this._changeCurrent,this),this.listenTo(this.model,"change:value",this._changeValue,this),this.listenTo(this.model,"change:type change:optional change:multiple 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h=l[6*c+16],d=s(a,24*c+72),f=s(a,24*c+80);i.zoomLevels.push({reduction:h,dataOffset:d,indexOffset:f})}n.when(i.readChromTree()).then(function(){i.getAutoSQL(function(t){return i.schema=t,e.resolve(i)})})}),e}function h(t,e,i,n,r){this.bbi=t,this.type=e,this.fieldCount=i,this.offset=n,this.field=r}var d=t.Range,f=t.union,p=t.intersection,m=e.inflateBuffer,v=e.arrayCopy,g=2291137574,_=654086024,y=2273964779,b=3958540679,w=256,x=65536,k=16777216,C=4294967296,S=new RegExp("^[0-9]+,[0-9]+,[0-9]+");return l.prototype.readChromTree=function(){var t=this;this.chromsToIDs={},this.idsToChroms={},this.maxID=0;var e=this.unzoomedDataOffset;return e=e+4-(e-this.chromTreeOffset&3),n.when(o(this.url,this.chromTreeOffset,e-this.chromTreeOffset)).then(function(e){var i=new Uint8Array(e),n=new Int16Array(e),r=new Int32Array(e),a=(r[0],r[1],r[2]),o=(r[3],s(i,16),function(e){var r=i[e],l=n[e/2+1];e+=4;for(var u=0;u<l;++u)if(0===r){e+=a;var c=s(i,e);e+=8,c-=t.chromTreeOffset,o(c)}else{for(var h="",d=0;d<a;++d){var f=i[e++];0!==f&&(h+=String.fromCharCode(f))}var p=i[e+3]<<24|i[e+2]<<16|i[e+1]<<8|i[e+0];i[e+7],i[e+6],i[e+5],i[e+4],e+=8,t.chromsToIDs[h]=p,0===h.indexOf("chr")&&(t.chromsToIDs[h.substr(3)]=p),t.idsToChroms[p]=h,t.maxID=Math.max(t.maxID,p)}});o(32)})},u.prototype.readWigData=function(t,e,i){var n=this.bwg.chromsToIDs[t];return void 0===n?[]:this.readWigDataById(n,e,i)},u.prototype.readWigDataById=function(t,e,i){var r=this,a=n.Deferred();if(!this.cirHeader)return n.when(o(r.bwg.url,this.cirTreeOffset,48)).then(function(o){r.cirHeader=o;var s=new Int32Array(r.cirHeader);r.cirBlockSize=s[1],n.when(r.readWigDataById(t,e,i)).then(function(t){a.resolve(t)})}),a;var l=[],u=0,c=(Date.now(),function(n,r,a,o){return(t<0||n==t)&&r<=i&&a>=e}),h=function(t,e){if(r.bwg.instrument&&console.log("level="+e+"; offset="+t+"; time="+(0|Date.now())),u+=t.length,1==t.length&&t[0]-r.cirTreeOffset==48&&r.cachedCirRoot)return m(r.cachedCirRoot,0,e),void(0===--u&&n.when(r.fetchFeatures(c,l)).then(function(t){a.resolve(t)}));for(var i,o=4+32*r.cirBlockSize,s=0;s<t.length;++s){var h=new d(t[s],t[s]+o);i=i?f(i,h):h}for(var v=i.ranges(),g=0;g<v.length;++g){var _=v[g];p(t,_,e)}},p=function(t,e,i,s){e.max(),e.min();n.when(o(r.bwg.url,e.min(),e.max()-e.min())).then(function(o){for(var s=0;s<t.length;++s)e.contains(t[s])&&(m(o,t[s]-e.min(),i),t[s]-r.cirTreeOffset==48&&t[s]-e.min()==0&&(r.cachedCirRoot=o),0===--u&&n.when(r.fetchFeatures(c,l)).then(function(t){a.resolve(t)}))})},m=function(n,r,a){var o=new Uint8Array(n),u=new Int16Array(n),c=new Int32Array(n),d=o[r],f=u[r/2+1];if(r+=4,0!==d)for(var p=0;p<f;++p){var m=r/4,v=c[m],g=c[m+1],_=c[m+2],y=c[m+3],b=s(o,r+16),w=s(o,r+24);(t<0||v<t||v==t&&g<=i)&&(t<0||_>t||_==t&&y>=e)&&l.push({offset:b,size:w}),r+=32}else{for(var x=[],p=0;p<f;++p){var m=r/4,v=c[m],g=c[m+1],_=c[m+2],y=c[m+3],b=s(o,r+16);(t<0||v<t||v==t&&g<=i)&&(t<0||_>t||_==t&&y>=e)&&x.push(b),r+=24}x.length>0&&h(x,a+1)}};return h([r.cirTreeOffset+48],1),a},u.prototype.fetchFeatures=function(t,e){var r=this,a=n.Deferred();if(e.sort(function(t,e){return(0|t.offset)-(0|e.offset)}),0===e.length)return[];var s=[],l=function(t,e,n,a){a||(a={});var o=new i;o._chromId=t,o.segment=r.bwg.idsToChroms[t],o.min=e,o.max=n,o.type=r.bwg.type;for(var l in a)o[l]=a[l];s.push(o)},u=function(){if(0===e.length){Date.now();return a.resolve(s)}var i=e[0];if(i.data)r.parseFeatures(i.data,l,t),e.splice(0,1),u();else{for(var c=i.offset,h=i.size,d=1;d<e.length&&e[d].offset==c+h;)h+=e[d].size,++d;n.when(o(r.bwg.url,c,h)).then(function(t){for(var i=0,n=0;i<h;){var a,o=e[n];if(r.bwg.uncompressBufSize>0)a=m(t,i+2,o.size-2);else{var s=new Uint8Array(o.size);v(new Uint8Array(t,i,o.size),0,s,0,o.size),a=s.buffer}o.data=a,i+=o.size,++n}u()})}};return u(),a},u.prototype.parseFeatures=function(t,e,i){var a=new Uint8Array(t);if(this.isSummary)for(var o=new Int16Array(t),s=new Int32Array(t),l=new Float32Array(t),u=t.byteLength/32,c=0;c<u;++c){var h=s[8*c],m=s[8*c+1],v=s[8*c+2],g=s[8*c+3],_=(l[8*c+4],l[8*c+5]),y=l[8*c+6];l[8*c+7];if(i(h,m+1,v)){var b={type:"bigwig",score:y/g,maxScore:_};"bigbed"==this.bwg.type&&(b.type="density"),e(h,m+1,v,b)}}else if("bigwig"==this.bwg.type){var o=new Int16Array(t),s=new Int32Array(t),l=new Float32Array(t),h=s[0],w=s[1],x=(s[2],s[3]),k=s[4],C=a[20],u=o[11];if(3==C)for(var c=0;c<u;++c){var T=l[c+6],A=w+c*x+1,M=w+c*x+k;i(h,A,M)&&e(h,A,M,{score:T})}else if(2==C)for(var c=0;c<u;++c){var m=s[2*c+6]+1,v=m+k-1,T=l[2*c+7];i(h,m,v)&&e(h,m,v,{score:T})}else if(1==C)for(var c=0;c<u;++c){var m=s[3*c+6]+1,v=s[3*c+7],T=l[3*c+8];m>v&&(m=v),i(h,m,v)&&e(h,m,v,{score:T})}else console.log("Currently not handling bwgType="+C)}else{if("bigbed"!=this.bwg.type)throw Error("Don't know what to do with "+this.bwg.type);for(var E=0,O=this.bwg.definedFieldCount,$=this.bwg.schema;E<a.length;){var h=a[E+3]<<24|a[E+2]<<16|a[E+1]<<8|a[E+0],m=a[E+7]<<24|a[E+6]<<16|a[E+5]<<8|a[E+4],v=a[E+11]<<24|a[E+10]<<16|a[E+9]<<8|a[E+8];E+=12;for(var D="";;){var j=a[E++];if(0==j)break;D+=String.fromCharCode(j)}var R,P={};if(R=D.length>0?D.split("\t"):[],R.length>0&&O>3&&(P.label=R[0]),R.length>1&&O>4){var T=parseInt(R[1]);isNaN(T)||(P.score=T)}if(R.length>2&&O>5&&(P.orientation=R[2]),R.length>5&&O>8){var N=R[5];S.test(N)&&(P.itemRgb="rgb("+N+")")}if(R.length>O-3&&$)for(var I=O-3;I<R.length;++I)P[$.fields[I+3].name]=R[I];if(i(h,m+1,v,R))if(O<12)e(h,m+1,v,P);else{var L=0|R[3],H=0|R[4],z=0|R[6],q=R[7].split(","),F=R[8].split(",");if(P.exonFrames){var B=P.exonFrames.split(",");P.exonFrames=void 0}P.type="transcript";var V=new r;for(var U in P)V[U]=P[U];if(V.id=R[0],V.segment=this.bwg.idsToChroms[h],V.min=m+1,V.max=v,V.notes=[],P.groups=[V],R.length>9){var W=P.geneName||R[9],G=W;R.length>10&&(G=R[10]),P.geneName2&&(G=P.geneName2);var X=n.extend({},V);X.id=W,X.label=G,X.type="gene",P.groups.push(X)}for(var Y=[],J=0;J<z;++J){var K=(0|F[J])+m,Q=K+(0|q[J]),Z=new d(K,Q);Y.push(Z)}for(var tt=f(Y),et=tt.ranges(),it=0;it<et.length;++it){var nt=et[it];e(h,nt.min()+1,nt.max(),P)}if(H>L){var rt="+"==P.orientation?new d(L,H+3):new d(L-3,H),at=p(tt,rt);if(at){P.type="translation";for(var ot=at.ranges(),st=0,lt=0;ot[0].min()>et[lt].max();)lt++;for(var it=0;it<ot.length;++it){var ut=it;"-"==P.orientation&&(ut=ot.length-it-1);var nt=ot[ut];if(P.readframe=st,B){var ct=parseInt(B[ut+lt]);"number"==typeof ct&&ct>=0&&ct<=2&&(P.readframe=ct,P.readframeExplicit=!0)}var ht=nt.max()-nt.min();st=(st+ht)%3,e(h,nt.min()+1,nt.max(),P)}}}}}}},u.prototype.getFirstAdjacent=function(t,e,i,n){var r=this.bwg.chromsToIDs[t];if(void 0===r)return n([]);this.getFirstAdjacentById(r,e,i,n)},u.prototype.getFirstAdjacentById=function(t,e,i,n){var r=this;if(!this.cirHeader)return void this.bwg.data.slice(this.cirTreeOffset,48).fetch(function(a){r.cirHeader=a;var o=new Int32Array(r.cirHeader);r.cirBlockSize=o[1],r.getFirstAdjacentById(t,e,i,n)});var a=null,o=-1,l=-1,u=0,c=(Date.now(),function(t,e){u+=t.length;for(var i,n=4+32*r.cirBlockSize,a=0;a<t.length;++a){var o=new d(t[a],t[a]+n);i=i?f(i,o):o}for(var s=i.ranges(),l=0;l<s.length;++l){var c=s[l];h(t,c,e)}}),h=function(o,s,l,c){s.max(),s.min();r.bwg.data.slice(s.min(),s.max()-s.min()).fetch(function(c){for(var h=0;h<o.length;++h)if(s.contains(o[h])&&(p(c,o[h]-s.min(),l),0==--u)){if(!a)return i>0&&(0!=t||e>0)?r.getFirstAdjacentById(0,0,i,n):i<0&&(t!=r.bwg.maxID||e<1e9)?r.getFirstAdjacentById(r.bwg.maxID,1e9,i,n):n([]);r.fetchFeatures(function(n,r,a,o){return i<0&&(n<t||a<e)||i>0&&(n>t||r>e)},[a],function(t){for(var e=null,r=-1,a=-1,o=0;o<t.length;++o){var s=t[o],l=s._chromId,u=s.min,c=s.max;(null==e||i<0&&(l>r||c>a)||i>0&&(l<r||u<a))&&(e=s,a=i<0?c:u,r=l)}return n(null!=e?[e]:[])})}})},p=function(n,u,h){var d=new Uint8Array(n),f=new Int16Array(n),p=new Int32Array(n),m=d[u],v=f[u/2+1];if(u+=4,0!=m)for(var g=0;g<v;++g){var _=u/4,y=p[_],b=p[_+1],w=p[_+2],x=p[_+3],k=s(d,u+16),C=s(d,u+24);(i<0&&(y<t||y==t&&b<=e)||i>0&&(w>t||w==t&&x>=e))&&(/_random/.exec(r.bwg.idsToChroms[y])||(null==a||i<0&&(w>o||w==o&&x>l)||i>0&&(y<o||y==o&&b<l))&&(a={offset:k,size:C},l=i<0?x:b,o=i<0?w:y)),u+=32}else{for(var S=-1,T=-1,g=0;g<v;++g){var _=u/4,y=p[_],b=p[_+1],w=p[_+2],x=p[_+3],k=p[_+4]<<32|p[_+5];(i<0&&(y<t||y==t&&b<=e)&&w>=t||i>0&&(w>t||w==t&&x>=e)&&y<=t)&&(S<0||x>T)&&(S=k,T=i<0?x:b,i<0?w:y),u+=24}S>=0&&c([S],h+1)}};c([r.cirTreeOffset+48],1)},l.prototype.readWigData=function(t,e,i){var n,r=i-e;if(r<=25e3||0===this.zoomLevels.length)n=this.getUnzoomedView();else for(var a=0;a<this.zoomLevels.length;a++)if(r/this.zoomLevels[a].reduction<25e3){n=this.getZoomedView(a);break}return n.readWigData(t,e,i)},l.prototype.getUnzoomedView=function(){if(!this.unzoomedView){var t=4e3;this.zoomLevels[0]&&(t=this.zoomLevels[0].dataOffset-this.unzoomedIndexOffset),this.unzoomedView=new u(this,this.unzoomedIndexOffset,t,!1)}return this.unzoomedView},l.prototype.getZoomedView=function(t){var e=this.zoomLevels[t];return e.view||(e.view=new u(this,e.indexOffset,4e3,!0)),e.view},l.prototype._tsFetch=function(t,e,i,n,r){var a=this;if(!(t>=this.zoomLevels.length-1)){var o;return o=t<0?this.getUnzoomedView():this.getZoomedView(t),o.readWigDataById(e,i,n,r)}if(this.topLevelReductionCache){for(var s=[],l=this.topLevelReductionCache,u=0;u<l.length;++u)l[u]._chromId==e&&s.push(l[u]);return r(s)}this.getZoomedView(this.zoomLevels.length-1).readWigDataById(-1,0,3e8,function(o){return a.topLevelReductionCache=o,a._tsFetch(t,e,i,n,r)})},l.prototype.thresholdSearch=function(t,e,i,n,r){function a(){if(0==l.length)return r(null);l.sort(function(t,e){var n=t.zoom-e.zoom;return 0!=n?n:(n=t.chrOrd-e.chrOrd,0!=n?n:t.min-e.min*i)});var t=l.splice(0,1)[0];o._tsFetch(t.zoom,t.chr,t.min,t.max,function(o){var s=i>0?0:3e8;t.fromRef&&(s=e);for(var u=0;u<o.length;++u){var c,h=o[u];if(c=void 0!=h.maxScore?h.maxScore:h.score,i>0){if(c>n)if(t.zoom<0){if(h.min>s)return r(h)}else h.max>s&&l.push({chr:t.chr,chrOrd:t.chrOrd,zoom:t.zoom-2,min:h.min,max:h.max,fromRef:t.fromRef})}else if(c>n)if(t.zoom<0){if(h.max<s)return r(h)}else h.min<s&&l.push({chr:t.chr,chrOrd:t.chrOrd,zoom:t.zoom-2,min:h.min,max:h.max,fromRef:t.fromRef})}a()})}i=i<0?-1:1;for(var o=this,s=this.chromsToIDs[t],l=[{chrOrd:0,chr:s,zoom:o.zoomLevels.length-4,min:0,max:3e8,fromRef:!0}],u=1;u<=this.maxID+1;++u){var c=(s+i*u)%(this.maxID+1);c<0&&(c+=this.maxID+1),l.push({chrOrd:u,chr:c,zoom:o.zoomLevels.length-1,min:0,max:3e8})}a()},l.prototype.getAutoSQL=function(t){if(!this.asOffset)return t(null);n.when(o(this.url,this.asOffset,2048)).then(function(e){for(var i=new Uint8Array(e),n="",r=0;r<i.length&&0!=i[r];++r)n+=String.fromCharCode(i[r]);var a=/(\w+)\s+(\w+)\s+("([^"]+)")?\s+\(\s*/,o=/([\w\[\]]+)\s+(\w+)\s*;\s*("([^"]+)")?\s*/g,s=a.exec(n);if(s){var l={declType:s[1],name:s[2],comment:s[4],fields:[]};n=n.substring(s[0]);for(var u=o.exec(n);null!=u;u=o.exec(n))l.fields.push({type:u[1],name:u[2],comment:u[4]});return t(l)}})},l.prototype.getExtraIndices=function(t){var e=this;if(this.version<4||0==this.extHeaderOffset||"bigbed"!=this.type)return t(null);this.data.slice(this.extHeaderOffset,64).fetch(function(i){if(!i)return t(null,"Couldn't fetch extension header");var n=new Uint8Array(i),r=new Int16Array(i),a=(new Int32Array(i),r[0],r[1]),o=s(n,4);if(0==a)return t(null);e.data.slice(o,20*a).fetch(function(i){if(!i)return t(null,"Couldn't fetch index info");for(var n=new Uint8Array(i),r=new Int16Array(i),o=(new Int32Array(i),[]),l=0;l<a;++l){var u=r[10*l],c=r[10*l+1],d=s(n,20*l+4),f=r[10*l+8],p=new h(e,u,c,d,f);o.push(p)}t(o)})})},h.prototype.lookup=function(t,e){var 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i,n;if(null==t||null==t.istate||null==t.next_in)return-2;for(e=4==e?m:f,i=m;;)switch(t.istate.mode){case 0:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,8!=(15&(t.istate.method=t.next_in[t.next_in_index++]))){t.istate.mode=13,t.msg="unknown compression method",t.istate.marker=5;break}if(8+(t.istate.method>>4)>t.istate.wbits){t.istate.mode=13,t.msg="invalid window size",t.istate.marker=5;break}t.istate.mode=1;case 1:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,n=255&t.next_in[t.next_in_index++],((t.istate.method<<8)+n)%31!=0){t.istate.mode=13,t.msg="incorrect header check",t.istate.marker=5;break}if(0==(32&n)){t.istate.mode=7;break}t.istate.mode=2;case 2:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=3;case 3:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=4;case 4:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=5;case 5:return 0==t.avail_in?i:(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.adler=t.istate.need,t.istate.mode=6,2);case 6:return t.istate.mode=13,t.msg="need dictionary",t.istate.marker=0,-2;case 7:if(-3==(i=t.istate.blocks.proc(t,i))){t.istate.mode=13,t.istate.marker=0;break}if(i==f&&(i=e),i!=p)return i;if(i=e,t.istate.blocks.reset(t,t.istate.was),0!=t.istate.nowrap){t.istate.mode=12;break}t.istate.mode=8;case 8:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=9;case 9:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=10;case 10:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=11;case 11:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.istate.was[0]!=t.istate.need){t.istate.mode=13,t.msg="incorrect data check",t.istate.marker=5;break}t.istate.mode=12;case 12:return p;case 13:return-3;default:return-2}},e.prototype.inflateSetDictionary=function(t,e,i){var n=0,r=i;return null==t||null==t.istate||6!=t.istate.mode?-2:t._adler.adler32(1,e,0,i)!=t.adler?-3:(t.adler=t._adler.adler32(0,null,0,0),r>=1<<t.istate.wbits&&(r=(1<<t.istate.wbits)-1,n=i-r),t.istate.blocks.set_dictionary(e,n,r),t.istate.mode=7,f)};var T=[0,0,255,255];e.prototype.inflateSync=function(t){var e,i,n,r,a;if(null==t||null==t.istate)return-2;if(13!=t.istate.mode&&(t.istate.mode=13,t.istate.marker=0),0==(e=t.avail_in))return m;for(i=t.next_in_index,n=t.istate.marker;0!=e&&n<4;)t.next_in[i]==T[n]?n++:n=0!=t.next_in[i]?0:4-n,i++,e--;return t.total_in+=i-t.next_in_index,t.next_in_index=i,t.avail_in=e,t.istate.marker=n,4!=n?-3:(r=t.total_in,a=t.total_out,this.inflateReset(t),t.total_in=r,t.total_out=a,t.istate.mode=7,f)},e.prototype.inflateSyncPoint=function(t){return null==t||null==t.istate||null==t.istate.blocks?-2:t.istate.blocks.sync_point()};var A=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];i.prototype.reset=function(t,e){e&&(e[0]=this.check),6==this.mode&&this.codes.free(t),this.mode=g,this.bitk=0,this.bitb=0,this.read=this.write=0,this.checkfn&&(t.adler=this.check=t._adler.adler32(0,null,0,0))},i.prototype.proc=function(t,e){var i,n,r,s,l,u,c;for(s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,u=this.write,c=u<this.read?this.read-u-1:this.end-u;;)switch(this.mode){case g:for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}switch(i=7&n,this.last=1&i,i>>>1){case 0:n>>>=3,r-=3,i=7&r,n>>>=i,r-=i,this.mode=1;break;case 1:var h=new Int32Array(1),d=new Int32Array(1),m=[],_=[];a(h,d,m,_,t),this.codes.init(h[0],d[0],m[0],0,_[0],0,t),n>>>=3,r-=3,this.mode=6;break;case 2:n>>>=3,r-=3,this.mode=3;break;case 3:return n>>>=3,r-=3,this.mode=13,t.msg="invalid block type",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e)}break;case 1:for(;r<32;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if((~n>>>16&65535)!=(65535&n))return this.mode=13,t.msg="invalid stored block lengths",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);this.left=65535&n,n=r=0,this.mode=0!=this.left?2:0!=this.last?7:g;break;case 2:if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=u,this.inflate_flush(t,e);if(0==c&&(u==end&&0!=read&&(u=0,c=u<this.read?this.read-u-1:this.end-u),0==c&&(this.write=u,e=this.inflate_flush(t,e),u=this.write,c=u<this.read?this.read-u-1:this.end-u,u==this.end&&0!=this.read&&(u=0,c=u<this.read?this.read-u-1:this.end-u),0==c)))return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);if(e=f,i=this.left,i>l&&(i=l),i>c&&(i=c),o(t.next_in,s,this.window,u,i),s+=i,l-=i,u+=i,c-=i,0!=(this.left-=i))break;this.mode=0!=this.last?7:g;break;case 3:for(;r<14;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(this.table=i=16383&n,(31&i)>29||(i>>5&31)>29)return this.mode=9,t.msg="too many length or distance symbols",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);if(i=258+(31&i)+(i>>5&31),null==this.blens||this.blens.length<i)this.blens=new Int32Array(i);else for(var y=0;y<i;y++)this.blens[y]=0;n>>>=14,r-=14,this.index=0,mode=4;case 4:for(;this.index<4+(this.table>>>10);){for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}this.blens[A[this.index++]]=7&n,n>>>=3,r-=3}for(;this.index<19;)this.blens[A[this.index++]]=0;if(this.bb[0]=7,(i=this.inftree.inflate_trees_bits(this.blens,this.bb,this.tb,this.hufts,t))!=f)return e=i,-3==e&&(this.blens=null,this.mode=9),this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=u,this.inflate_flush(t,e);this.index=0,this.mode=5;case 5:for(;;){if(i=this.table,!(this.index<258+(31&i)+(i>>5&31)))break;var y,b,w;for(i=this.bb[0];r<i;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(i=this.hufts[3*(this.tb[0]+(n&v[i]))+1],(w=this.hufts[3*(this.tb[0]+(n&v[i]))+2])<16)n>>>=i,r-=i,this.blens[this.index++]=w;else{for(y=18==w?7:w-14,b=18==w?11:3;r<i+y;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(n>>>=i,r-=i,b+=n&v[y],n>>>=y,r-=y,y=this.index,i=this.table,y+b>258+(31&i)+(i>>5&31)||16==w&&y<1)return this.blens=null,this.mode=9,t.msg="invalid bit length repeat",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);w=16==w?this.blens[y-1]:0;do{this.blens[y++]=w}while(0!=--b);this.index=y}}this.tb[0]=-1;var h=new Int32Array(1),d=new Int32Array(1),m=new Int32Array(1),_=new Int32Array(1);if(h[0]=9,d[0]=6,i=this.table,(i=this.inftree.inflate_trees_dynamic(257+(31&i),1+(i>>5&31),this.blens,h,d,m,_,this.hufts,t))!=f)return-3==i&&(this.blens=null,this.mode=13),e=i,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);this.codes.init(h[0],d[0],this.hufts,m[0],this.hufts,_[0],t),this.mode=6;case 6:if(this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,(e=this.codes.proc(this,t,e))!=p)return this.inflate_flush(t,e);if(e=f,this.codes.free(t),s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,u=this.write,c=u<this.read?this.read-u-1:this.end-u,0==this.last){this.mode=g;break}this.mode=7;case 7:if(this.write=u,e=this.inflate_flush(t,e),u=this.write,c=u<this.read?this.read-u-1:this.end-u,this.read!=this.write)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);mode=12;case 8:return e=p,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);case 9:return e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);default:return e=-2,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e)}},i.prototype.free=function(t){this.reset(t,null),this.window=null,this.hufts=null},i.prototype.set_dictionary=function(t,e,i){o(t,e,window,0,i),this.read=this.write=i},i.prototype.sync_point=function(){return 1==this.mode},i.prototype.inflate_flush=function(t,e){var i,n,r;return n=t.next_out_index,r=this.read,i=(r<=this.write?this.write:this.end)-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==m&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i,r==this.end&&(r=0,this.write==this.end&&(this.write=0),i=this.write-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==m&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i),t.next_out_index=n,this.read=r,e};n.prototype.init=function(t,e,i,n,r,a,o){this.mode=0,this.lbits=t,this.dbits=e,this.ltree=i,this.ltree_index=n,this.dtree=r,this.dtree_index=a,this.tree=null},n.prototype.proc=function(t,e,i){var n,r,a,o,s,l,u,c=0,h=0,d=0;for(d=e.next_in_index,o=e.avail_in,c=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s;;)switch(this.mode){case 0:if(l>=258&&o>=10&&(t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,i=this.inflate_fast(this.lbits,this.dbits,this.ltree,this.ltree_index,this.dtree,this.dtree_index,t,e),d=e.next_in_index,o=e.avail_in,c=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s,i!=f)){this.mode=i==p?7:9;break}this.need=this.lbits,this.tree=this.ltree,this.tree_index=this.ltree_index,this.mode=1;case 1:for(n=this.need;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(c&v[n])),c>>>=this.tree[r+1],h-=this.tree[r+1],0==(a=this.tree[r])){this.lit=this.tree[r+2],this.mode=6;break}if(0!=(16&a)){this.get=15&a,this.len=this.tree[r+2],this.mode=2;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}if(0!=(32&a)){this.mode=7;break}return this.mode=9,e.msg="invalid literal/length code",i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 2:for(n=this.get;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}this.len+=c&v[n],c>>=n,h-=n,this.need=this.dbits,this.tree=this.dtree,this.tree_index=this.dtree_index,this.mode=3;case 3:for(n=this.need;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(c&v[n])),c>>=this.tree[r+1],h-=this.tree[r+1],0!=(16&(a=this.tree[r]))){this.get=15&a,this.dist=this.tree[r+2],this.mode=4;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}return this.mode=9,e.msg="invalid distance code",i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 4:for(n=this.get;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}this.dist+=c&v[n],c>>=n,h-=n,this.mode=5;case 5:for(u=s-this.dist;u<0;)u+=t.end;for(;0!=this.len;){if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);t.window[s++]=t.window[u++],l--,u==t.end&&(u=0),this.len--}this.mode=0;break;case 6:if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,t.window[s++]=this.lit,l--,this.mode=0;break;case 7:if(h>7&&(h-=8,o++,d--),t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,t.read!=t.write)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);this.mode=8;case 8:return i=p,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 9:return i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);default:return i=-2,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i)}},n.prototype.free=function(t){},n.prototype.inflate_fast=function(t,e,i,n,r,a,s,l){var u,c,h,d,m,g,_,y,b,w,x,k,C,S,T,A;_=l.next_in_index,y=l.avail_in,m=s.bitb,g=s.bitk,b=s.write,w=b<s.read?s.read-b-1:s.end-b,x=v[t],k=v[e];do{for(;g<20;)y--,m|=(255&l.next_in[_++])<<g,g+=8;if(u=m&x,c=i,h=n,A=3*(h+u),0!=(d=c[A]))for(;;){if(m>>=c[A+1],g-=c[A+1],0!=(16&d)){for(d&=15,C=c[A+2]+(m&v[d]),m>>=d,g-=d;g<15;)y--,m|=(255&l.next_in[_++])<<g,g+=8;for(u=m&k,c=r,h=a,A=3*(h+u),d=c[A];;){if(m>>=c[A+1],g-=c[A+1],0!=(16&d)){for(d&=15;g<d;)y--,m|=(255&l.next_in[_++])<<g,g+=8;if(S=c[A+2]+(m&v[d]),m>>=d,g-=d,w-=C,b>=S)T=b-S,s.window[b++]=s.window[T++],s.window[b++]=s.window[T++],C-=2;else{T=b-S;do{T+=s.end}while(T<0);if(d=s.end-T,C>d){if(C-=d,b-T>0&&d>b-T)do{s.window[b++]=s.window[T++]}while(0!=--d);else 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t=l.splice(0,1)[0];o._tsFetch(t.zoom,t.chr,t.min,t.max,function(o){var s=i>0?0:3e8;t.fromRef&&(s=e);for(var u=0;u<o.length;++u){var c,h=o[u];if(c=void 0!=h.maxScore?h.maxScore:h.score,i>0){if(c>n)if(t.zoom<0){if(h.min>s)return r(h)}else h.max>s&&l.push({chr:t.chr,chrOrd:t.chrOrd,zoom:t.zoom-2,min:h.min,max:h.max,fromRef:t.fromRef})}else if(c>n)if(t.zoom<0){if(h.max<s)return r(h)}else h.min<s&&l.push({chr:t.chr,chrOrd:t.chrOrd,zoom:t.zoom-2,min:h.min,max:h.max,fromRef:t.fromRef})}a()})}i=i<0?-1:1;for(var o=this,s=this.chromsToIDs[t],l=[{chrOrd:0,chr:s,zoom:o.zoomLevels.length-4,min:0,max:3e8,fromRef:!0}],u=1;u<=this.maxID+1;++u){var c=(s+i*u)%(this.maxID+1);c<0&&(c+=this.maxID+1),l.push({chrOrd:u,chr:c,zoom:o.zoomLevels.length-1,min:0,max:3e8})}a()},l.prototype.getAutoSQL=function(t){if(!this.asOffset)return t(null);n.when(o(this.url,this.asOffset,2048)).then(function(e){for(var i=new Uint8Array(e),n="",r=0;r<i.length&&0!=i[r];++r)n+=String.fromCharCode(i[r]);var a=/(\w+)\s+(\w+)\s+("([^"]+)")?\s+\(\s*/,o=/([\w\[\]]+)\s+(\w+)\s*;\s*("([^"]+)")?\s*/g,s=a.exec(n);if(s){var l={declType:s[1],name:s[2],comment:s[4],fields:[]};n=n.substring(s[0]);for(var u=o.exec(n);null!=u;u=o.exec(n))l.fields.push({type:u[1],name:u[2],comment:u[4]});return t(l)}})},l.prototype.getExtraIndices=function(t){var e=this;if(this.version<4||0==this.extHeaderOffset||"bigbed"!=this.type)return t(null);this.data.slice(this.extHeaderOffset,64).fetch(function(i){if(!i)return t(null,"Couldn't fetch extension header");var n=new Uint8Array(i),r=new Int16Array(i),a=(new Int32Array(i),r[0],r[1]),o=s(n,4);if(0==a)return t(null);e.data.slice(o,20*a).fetch(function(i){if(!i)return t(null,"Couldn't fetch index info");for(var n=new Uint8Array(i),r=new Int16Array(i),o=(new Int32Array(i),[]),l=0;l<a;++l){var u=r[10*l],c=r[10*l+1],d=s(n,20*l+4),f=r[10*l+8],p=new h(e,u,c,d,f);o.push(p)}t(o)})})},h.prototype.lookup=function(t,e){var i=this;this.bbi.data.slice(this.offset,32).fetch(function(n){function r(n){i.bbi.data.slice(n,4+u*(c+h)).fetch(function(n){var o=new Uint8Array(n),l=new Uint16Array(n),u=(new Uint32Array(n),o[0]),d=l[1],f=4;if(0!=u){for(var p=0;p<d;++p){for(var m="",g=0;g<c;++g){var v=o[f++];0!=v&&(m+=String.fromCharCode(v))}if(m==t){var _=s(o,f),y=a(o,f+8);return i.bbi.getUnzoomedView().fetchFeatures(function(e,n,r,a){if(a&&a.length>i.field-3)return a[i.field-3]==t},[{offset:_,size:y}],e)}f+=h}return e([])}for(var b=null,p=0;p<d;++p){for(var m="",g=0;g<c;++g){var v=o[f++];0!=v&&(m+=String.fromCharCode(v))}var w=s(o,f);if(f+=8,t.localeCompare(m)<0&&b)return void r(b);b=w}r(b)})}var o=new Uint8Array(n),l=(new Int16Array(n),new Int32Array(n)),u=(l[0],l[1]),c=l[2],h=l[3];s(o,16);r(i.offset+32)})},{makeBwg:c}}.apply(e,r))&&(t.exports=a)}).call(e,i(0))},function(t,e,i){var n,r;n=[],void 0!==(r=function(){"use strict";function t(t,e){if("number"!=typeof t||"number"!=typeof e)throw"Bad range 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r}function n(){}function r(){}function a(t,e,i,n,r){return t[0]=_,e[0]=y,i[0]=b,n[0]=w,f}function o(t,e,i,n,r){if(0!=r){if(!t)throw"Undef src";if(!i)throw"Undef dest";0==e&&r==t.length?l(t,i,n):E?l(t.subarray(e,e+r),i,n):1==t.BYTES_PER_ELEMENT&&r>100?l(new Uint8Array(t.buffer,t.byteOffset+e,r),i,n):s(t,e,i,n,r)}}function s(t,e,i,n,r){for(var a=0;a<r;++a)i[n+a]=t[e+a]}function l(t,e,i){e.set(t,i)}function u(e,i,n,r){e=i?n?new Uint8Array(e,i,n):new Uint8Array(e,i,e.byteLength-i):new Uint8Array(e);var a=new t;a.inflateInit(c,!0),a.next_in=e,a.next_in_index=0,a.avail_in=e.length;for(var s=[],l=0;;){var u=new Uint8Array(32e3);a.next_out=u,a.next_out_index=0,a.avail_out=u.length;var h=a.inflate(d);if(h!=f&&h!=p&&h!=m)throw a.msg;if(0!=a.avail_out){var g=new Uint8Array(u.length-a.avail_out);o(u,0,g,0,u.length-a.avail_out),u=g}if(s.push(u),l+=u.length,h==p||h==m)break}if(r&&(r[0]=(i||0)+a.next_in_index),1==s.length)return s[0].buffer;for(var v=new Uint8Array(l),_=0,y=0;y<s.length;++y){var b=s[y];o(b,0,v,_,b.length),_+=b.length}return v.buffer}var c=15,h=1440,d=0,f=0,p=1,m=-5,g=[0,1,3,7,15,31,63,127,255,511,1023,2047,4095,8191,16383,32767,65535],v=0,_=9,y=5,b=[96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,192,80,7,10,0,8,96,0,8,32,0,9,160,0,8,0,0,8,128,0,8,64,0,9,224,80,7,6,0,8,88,0,8,24,0,9,144,83,7,59,0,8,120,0,8,56,0,9,208,81,7,17,0,8,104,0,8,40,0,9,176,0,8,8,0,8,136,0,8,72,0,9,240,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,200,81,7,13,0,8,100,0,8,36,0,9,168,0,8,4,0,8,132,0,8,68,0,9,232,80,7,8,0,8,92,0,8,28,0,9,152,84,7,83,0,8,124,0,8,60,0,9,216,82,7,23,0,8,108,0,8,44,0,9,184,0,8,12,0,8,140,0,8,76,0,9,248,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,196,81,7,11,0,8,98,0,8,34,0,9,164,0,8,2,0,8,130,0,8,66,0,9,228,80,7,7,0,8,90,0,8,26,0,9,148,84,7,67,0,8,122,0,8,58,0,9,212,82,7,19,0,8,106,0,8,42,0,9,180,0,8,10,0,8,138,0,8,74,0,9,244,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,204,81,7,15,0,8,102,0,8,38,0,9,172,0,8,6,0,8,134,0,8,70,0,9,236,80,7,9,0,8,94,0,8,30,0,9,156,84,7,99,0,8,126,0,8,62,0,9,220,82,7,27,0,8,110,0,8,46,0,9,188,0,8,14,0,8,142,0,8,78,0,9,252,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,194,80,7,10,0,8,97,0,8,33,0,9,162,0,8,1,0,8,129,0,8,65,0,9,226,80,7,6,0,8,89,0,8,25,0,9,146,83,7,59,0,8,121,0,8,57,0,9,210,81,7,17,0,8,105,0,8,41,0,9,178,0,8,9,0,8,137,0,8,73,0,9,242,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,202,81,7,13,0,8,101,0,8,37,0,9,170,0,8,5,0,8,133,0,8,69,0,9,234,80,7,8,0,8,93,0,8,29,0,9,154,84,7,83,0,8,125,0,8,61,0,9,218,82,7,23,0,8,109,0,8,45,0,9,186,0,8,13,0,8,141,0,8,77,0,9,250,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,198,81,7,11,0,8,99,0,8,35,0,9,166,0,8,3,0,8,131,0,8,67,0,9,230,80,7,7,0,8,91,0,8,27,0,9,150,84,7,67,0,8,123,0,8,59,0,9,214,82,7,19,0,8,107,0,8,43,0,9,182,0,8,11,0,8,139,0,8,75,0,9,246,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,206,81,7,15,0,8,103,0,8,39,0,9,174,0,8,7,0,8,135,0,8,71,0,9,238,80,7,9,0,8,95,0,8,31,0,9,158,84,7,99,0,8,127,0,8,63,0,9,222,82,7,27,0,8,111,0,8,47,0,9,190,0,8,15,0,8,143,0,8,79,0,9,254,96,7,256,0,8,80,0,8,16,84,8,115,82,7,31,0,8,112,0,8,48,0,9,193,80,7,10,0,8,96,0,8,32,0,9,161,0,8,0,0,8,128,0,8,64,0,9,225,80,7,6,0,8,88,0,8,24,0,9,145,83,7,59,0,8,120,0,8,56,0,9,209,81,7,17,0,8,104,0,8,40,0,9,177,0,8,8,0,8,136,0,8,72,0,9,241,80,7,4,0,8,84,0,8,20,85,8,227,83,7,43,0,8,116,0,8,52,0,9,201,81,7,13,0,8,100,0,8,36,0,9,169,0,8,4,0,8,132,0,8,68,0,9,233,80,7,8,0,8,92,0,8,28,0,9,153,84,7,83,0,8,124,0,8,60,0,9,217,82,7,23,0,8,108,0,8,44,0,9,185,0,8,12,0,8,140,0,8,76,0,9,249,80,7,3,0,8,82,0,8,18,85,8,163,83,7,35,0,8,114,0,8,50,0,9,197,81,7,11,0,8,98,0,8,34,0,9,165,0,8,2,0,8,130,0,8,66,0,9,229,80,7,7,0,8,90,0,8,26,0,9,149,84,7,67,0,8,122,0,8,58,0,9,213,82,7,19,0,8,106,0,8,42,0,9,181,0,8,10,0,8,138,0,8,74,0,9,245,80,7,5,0,8,86,0,8,22,192,8,0,83,7,51,0,8,118,0,8,54,0,9,205,81,7,15,0,8,102,0,8,38,0,9,173,0,8,6,0,8,134,0,8,70,0,9,237,80,7,9,0,8,94,0,8,30,0,9,157,84,7,99,0,8,126,0,8,62,0,9,221,82,7,27,0,8,110,0,8,46,0,9,189,0,8,14,0,8,142,0,8,78,0,9,253,96,7,256,0,8,81,0,8,17,85,8,131,82,7,31,0,8,113,0,8,49,0,9,195,80,7,10,0,8,97,0,8,33,0,9,163,0,8,1,0,8,129,0,8,65,0,9,227,80,7,6,0,8,89,0,8,25,0,9,147,83,7,59,0,8,121,0,8,57,0,9,211,81,7,17,0,8,105,0,8,41,0,9,179,0,8,9,0,8,137,0,8,73,0,9,243,80,7,4,0,8,85,0,8,21,80,8,258,83,7,43,0,8,117,0,8,53,0,9,203,81,7,13,0,8,101,0,8,37,0,9,171,0,8,5,0,8,133,0,8,69,0,9,235,80,7,8,0,8,93,0,8,29,0,9,155,84,7,83,0,8,125,0,8,61,0,9,219,82,7,23,0,8,109,0,8,45,0,9,187,0,8,13,0,8,141,0,8,77,0,9,251,80,7,3,0,8,83,0,8,19,85,8,195,83,7,35,0,8,115,0,8,51,0,9,199,81,7,11,0,8,99,0,8,35,0,9,167,0,8,3,0,8,131,0,8,67,0,9,231,80,7,7,0,8,91,0,8,27,0,9,151,84,7,67,0,8,123,0,8,59,0,9,215,82,7,19,0,8,107,0,8,43,0,9,183,0,8,11,0,8,139,0,8,75,0,9,247,80,7,5,0,8,87,0,8,23,192,8,0,83,7,51,0,8,119,0,8,55,0,9,207,81,7,15,0,8,103,0,8,39,0,9,175,0,8,7,0,8,135,0,8,71,0,9,239,80,7,9,0,8,95,0,8,31,0,9,159,84,7,99,0,8,127,0,8,63,0,9,223,82,7,27,0,8,111,0,8,47,0,9,191,0,8,15,0,8,143,0,8,79,0,9,255],w=[80,5,1,87,5,257,83,5,17,91,5,4097,81,5,5,89,5,1025,85,5,65,93,5,16385,80,5,3,88,5,513,84,5,33,92,5,8193,82,5,9,90,5,2049,86,5,129,192,5,24577,80,5,2,87,5,385,83,5,25,91,5,6145,81,5,7,89,5,1537,85,5,97,93,5,24577,80,5,4,88,5,769,84,5,49,92,5,12289,82,5,13,90,5,3073,86,5,193,192,5,24577],x=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],C=[0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0,112,112],k=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577],S=[0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13];t.prototype.inflateInit=function(t,i){return t||(t=c),i&&(i=!1),this.istate=new e,this.istate.inflateInit(this,i?-t:t)},t.prototype.inflate=function(t){return null==this.istate?-2:this.istate.inflate(this,t)},t.prototype.inflateEnd=function(){if(null==this.istate)return-2;var t=istate.inflateEnd(this);return this.istate=null,t},t.prototype.inflateSync=function(){return istate.inflateSync(this)},t.prototype.inflateSetDictionary=function(t,e){return istate.inflateSetDictionary(this,t,e)},e.prototype.inflateReset=function(t){return null==t||null==t.istate?-2:(t.total_in=t.total_out=0,t.msg=null,t.istate.mode=0!=t.istate.nowrap?7:0,t.istate.blocks.reset(t,null),f)},e.prototype.inflateEnd=function(t){return null!=this.blocks&&this.blocks.free(t),this.blocks=null,f},e.prototype.inflateInit=function(t,e){return t.msg=null,this.blocks=null,nowrap=0,e<0&&(e=-e,nowrap=1),e<8||e>15?(this.inflateEnd(t),-2):(this.wbits=e,t.istate.blocks=new i(t,0!=t.istate.nowrap?null:this,1<<e),this.inflateReset(t),f)},e.prototype.inflate=function(t,e){var i,n;if(null==t||null==t.istate||null==t.next_in)return-2;for(e=4==e?m:f,i=m;;)switch(t.istate.mode){case 0:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,8!=(15&(t.istate.method=t.next_in[t.next_in_index++]))){t.istate.mode=13,t.msg="unknown compression method",t.istate.marker=5;break}if(8+(t.istate.method>>4)>t.istate.wbits){t.istate.mode=13,t.msg="invalid window size",t.istate.marker=5;break}t.istate.mode=1;case 1:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,n=255&t.next_in[t.next_in_index++],((t.istate.method<<8)+n)%31!=0){t.istate.mode=13,t.msg="incorrect header check",t.istate.marker=5;break}if(0==(32&n)){t.istate.mode=7;break}t.istate.mode=2;case 2:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=3;case 3:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=4;case 4:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=5;case 5:return 0==t.avail_in?i:(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.adler=t.istate.need,t.istate.mode=6,2);case 6:return t.istate.mode=13,t.msg="need dictionary",t.istate.marker=0,-2;case 7:if(-3==(i=t.istate.blocks.proc(t,i))){t.istate.mode=13,t.istate.marker=0;break}if(i==f&&(i=e),i!=p)return i;if(i=e,t.istate.blocks.reset(t,t.istate.was),0!=t.istate.nowrap){t.istate.mode=12;break}t.istate.mode=8;case 8:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need=(255&t.next_in[t.next_in_index++])<<24&4278190080,t.istate.mode=9;case 9:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<16&16711680,t.istate.mode=10;case 10:if(0==t.avail_in)return i;i=e,t.avail_in--,t.total_in++,t.istate.need+=(255&t.next_in[t.next_in_index++])<<8&65280,t.istate.mode=11;case 11:if(0==t.avail_in)return i;if(i=e,t.avail_in--,t.total_in++,t.istate.need+=255&t.next_in[t.next_in_index++],t.istate.was[0]!=t.istate.need){t.istate.mode=13,t.msg="incorrect data check",t.istate.marker=5;break}t.istate.mode=12;case 12:return p;case 13:return-3;default:return-2}},e.prototype.inflateSetDictionary=function(t,e,i){var n=0,r=i;return null==t||null==t.istate||6!=t.istate.mode?-2:t._adler.adler32(1,e,0,i)!=t.adler?-3:(t.adler=t._adler.adler32(0,null,0,0),r>=1<<t.istate.wbits&&(r=(1<<t.istate.wbits)-1,n=i-r),t.istate.blocks.set_dictionary(e,n,r),t.istate.mode=7,f)};var T=[0,0,255,255];e.prototype.inflateSync=function(t){var e,i,n,r,a;if(null==t||null==t.istate)return-2;if(13!=t.istate.mode&&(t.istate.mode=13,t.istate.marker=0),0==(e=t.avail_in))return m;for(i=t.next_in_index,n=t.istate.marker;0!=e&&n<4;)t.next_in[i]==T[n]?n++:n=0!=t.next_in[i]?0:4-n,i++,e--;return t.total_in+=i-t.next_in_index,t.next_in_index=i,t.avail_in=e,t.istate.marker=n,4!=n?-3:(r=t.total_in,a=t.total_out,this.inflateReset(t),t.total_in=r,t.total_out=a,t.istate.mode=7,f)},e.prototype.inflateSyncPoint=function(t){return null==t||null==t.istate||null==t.istate.blocks?-2:t.istate.blocks.sync_point()};var A=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];i.prototype.reset=function(t,e){e&&(e[0]=this.check),6==this.mode&&this.codes.free(t),this.mode=v,this.bitk=0,this.bitb=0,this.read=this.write=0,this.checkfn&&(t.adler=this.check=t._adler.adler32(0,null,0,0))},i.prototype.proc=function(t,e){var i,n,r,s,l,u,c;for(s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,u=this.write,c=u<this.read?this.read-u-1:this.end-u;;)switch(this.mode){case v:for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}switch(i=7&n,this.last=1&i,i>>>1){case 0:n>>>=3,r-=3,i=7&r,n>>>=i,r-=i,this.mode=1;break;case 1:var h=new Int32Array(1),d=new Int32Array(1),m=[],_=[];a(h,d,m,_,t),this.codes.init(h[0],d[0],m[0],0,_[0],0,t),n>>>=3,r-=3,this.mode=6;break;case 2:n>>>=3,r-=3,this.mode=3;break;case 3:return n>>>=3,r-=3,this.mode=13,t.msg="invalid block type",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e)}break;case 1:for(;r<32;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if((~n>>>16&65535)!=(65535&n))return this.mode=13,t.msg="invalid stored block lengths",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);this.left=65535&n,n=r=0,this.mode=0!=this.left?2:0!=this.last?7:v;break;case 2:if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=u,this.inflate_flush(t,e);if(0==c&&(u==end&&0!=read&&(u=0,c=u<this.read?this.read-u-1:this.end-u),0==c&&(this.write=u,e=this.inflate_flush(t,e),u=this.write,c=u<this.read?this.read-u-1:this.end-u,u==this.end&&0!=this.read&&(u=0,c=u<this.read?this.read-u-1:this.end-u),0==c)))return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);if(e=f,i=this.left,i>l&&(i=l),i>c&&(i=c),o(t.next_in,s,this.window,u,i),s+=i,l-=i,u+=i,c-=i,0!=(this.left-=i))break;this.mode=0!=this.last?7:v;break;case 3:for(;r<14;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(this.table=i=16383&n,(31&i)>29||(i>>5&31)>29)return this.mode=9,t.msg="too many length or distance symbols",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);if(i=258+(31&i)+(i>>5&31),null==this.blens||this.blens.length<i)this.blens=new Int32Array(i);else for(var y=0;y<i;y++)this.blens[y]=0;n>>>=14,r-=14,this.index=0,mode=4;case 4:for(;this.index<4+(this.table>>>10);){for(;r<3;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}this.blens[A[this.index++]]=7&n,n>>>=3,r-=3}for(;this.index<19;)this.blens[A[this.index++]]=0;if(this.bb[0]=7,(i=this.inftree.inflate_trees_bits(this.blens,this.bb,this.tb,this.hufts,t))!=f)return e=i,-3==e&&(this.blens=null,this.mode=9),this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,write=u,this.inflate_flush(t,e);this.index=0,this.mode=5;case 5:for(;;){if(i=this.table,!(this.index<258+(31&i)+(i>>5&31)))break;var y,b,w;for(i=this.bb[0];r<i;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(i=this.hufts[3*(this.tb[0]+(n&g[i]))+1],(w=this.hufts[3*(this.tb[0]+(n&g[i]))+2])<16)n>>>=i,r-=i,this.blens[this.index++]=w;else{for(y=18==w?7:w-14,b=18==w?11:3;r<i+y;){if(0==l)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);e=f,l--,n|=(255&t.next_in[s++])<<r,r+=8}if(n>>>=i,r-=i,b+=n&g[y],n>>>=y,r-=y,y=this.index,i=this.table,y+b>258+(31&i)+(i>>5&31)||16==w&&y<1)return this.blens=null,this.mode=9,t.msg="invalid bit length repeat",e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);w=16==w?this.blens[y-1]:0;do{this.blens[y++]=w}while(0!=--b);this.index=y}}this.tb[0]=-1;var h=new Int32Array(1),d=new Int32Array(1),m=new Int32Array(1),_=new Int32Array(1);if(h[0]=9,d[0]=6,i=this.table,(i=this.inftree.inflate_trees_dynamic(257+(31&i),1+(i>>5&31),this.blens,h,d,m,_,this.hufts,t))!=f)return-3==i&&(this.blens=null,this.mode=13),e=i,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);this.codes.init(h[0],d[0],this.hufts,m[0],this.hufts,_[0],t),this.mode=6;case 6:if(this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,(e=this.codes.proc(this,t,e))!=p)return this.inflate_flush(t,e);if(e=f,this.codes.free(t),s=t.next_in_index,l=t.avail_in,n=this.bitb,r=this.bitk,u=this.write,c=u<this.read?this.read-u-1:this.end-u,0==this.last){this.mode=v;break}this.mode=7;case 7:if(this.write=u,e=this.inflate_flush(t,e),u=this.write,c=u<this.read?this.read-u-1:this.end-u,this.read!=this.write)return this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);mode=12;case 8:return e=p,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);case 9:return e=-3,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e);default:return e=-2,this.bitb=n,this.bitk=r,t.avail_in=l,t.total_in+=s-t.next_in_index,t.next_in_index=s,this.write=u,this.inflate_flush(t,e)}},i.prototype.free=function(t){this.reset(t,null),this.window=null,this.hufts=null},i.prototype.set_dictionary=function(t,e,i){o(t,e,window,0,i),this.read=this.write=i},i.prototype.sync_point=function(){return 1==this.mode},i.prototype.inflate_flush=function(t,e){var i,n,r;return n=t.next_out_index,r=this.read,i=(r<=this.write?this.write:this.end)-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==m&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i,r==this.end&&(r=0,this.write==this.end&&(this.write=0),i=this.write-r,i>t.avail_out&&(i=t.avail_out),0!=i&&e==m&&(e=f),t.avail_out-=i,t.total_out+=i,null!=this.checkfn&&(t.adler=this.check=t._adler.adler32(this.check,this.window,r,i)),o(this.window,r,t.next_out,n,i),n+=i,r+=i),t.next_out_index=n,this.read=r,e};n.prototype.init=function(t,e,i,n,r,a,o){this.mode=0,this.lbits=t,this.dbits=e,this.ltree=i,this.ltree_index=n,this.dtree=r,this.dtree_index=a,this.tree=null},n.prototype.proc=function(t,e,i){var n,r,a,o,s,l,u,c=0,h=0,d=0;for(d=e.next_in_index,o=e.avail_in,c=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s;;)switch(this.mode){case 0:if(l>=258&&o>=10&&(t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,i=this.inflate_fast(this.lbits,this.dbits,this.ltree,this.ltree_index,this.dtree,this.dtree_index,t,e),d=e.next_in_index,o=e.avail_in,c=t.bitb,h=t.bitk,s=t.write,l=s<t.read?t.read-s-1:t.end-s,i!=f)){this.mode=i==p?7:9;break}this.need=this.lbits,this.tree=this.ltree,this.tree_index=this.ltree_index,this.mode=1;case 1:for(n=this.need;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(c&g[n])),c>>>=this.tree[r+1],h-=this.tree[r+1],0==(a=this.tree[r])){this.lit=this.tree[r+2],this.mode=6;break}if(0!=(16&a)){this.get=15&a,this.len=this.tree[r+2],this.mode=2;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}if(0!=(32&a)){this.mode=7;break}return this.mode=9,e.msg="invalid literal/length code",i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 2:for(n=this.get;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}this.len+=c&g[n],c>>=n,h-=n,this.need=this.dbits,this.tree=this.dtree,this.tree_index=this.dtree_index,this.mode=3;case 3:for(n=this.need;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}if(r=3*(this.tree_index+(c&g[n])),c>>=this.tree[r+1],h-=this.tree[r+1],0!=(16&(a=this.tree[r]))){this.get=15&a,this.dist=this.tree[r+2],this.mode=4;break}if(0==(64&a)){this.need=a,this.tree_index=r/3+this.tree[r+2];break}return this.mode=9,e.msg="invalid distance code",i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 4:for(n=this.get;h<n;){if(0==o)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,o--,c|=(255&e.next_in[d++])<<h,h+=8}this.dist+=c&g[n],c>>=n,h-=n,this.mode=5;case 5:for(u=s-this.dist;u<0;)u+=t.end;for(;0!=this.len;){if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);t.window[s++]=t.window[u++],l--,u==t.end&&(u=0),this.len--}this.mode=0;break;case 6:if(0==l&&(s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l&&(t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,s==t.end&&0!=t.read&&(s=0,l=s<t.read?t.read-s-1:t.end-s),0==l)))return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);i=f,t.window[s++]=this.lit,l--,this.mode=0;break;case 7:if(h>7&&(h-=8,o++,d--),t.write=s,i=t.inflate_flush(e,i),s=t.write,l=s<t.read?t.read-s-1:t.end-s,t.read!=t.write)return t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);this.mode=8;case 8:return i=p,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);case 9:return i=-3,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i);default:return i=-2,t.bitb=c,t.bitk=h,e.avail_in=o,e.total_in+=d-e.next_in_index,e.next_in_index=d,t.write=s,t.inflate_flush(e,i)}},n.prototype.free=function(t){},n.prototype.inflate_fast=function(t,e,i,n,r,a,s,l){var u,c,h,d,m,v,_,y,b,w,x,C,k,S,T,A;_=l.next_in_index,y=l.avail_in,m=s.bitb,v=s.bitk,b=s.write,w=b<s.read?s.read-b-1:s.end-b,x=g[t],C=g[e];do{for(;v<20;)y--,m|=(255&l.next_in[_++])<<v,v+=8;if(u=m&x,c=i,h=n,A=3*(h+u),0!=(d=c[A]))for(;;){if(m>>=c[A+1],v-=c[A+1],0!=(16&d)){for(d&=15,k=c[A+2]+(m&g[d]),m>>=d,v-=d;v<15;)y--,m|=(255&l.next_in[_++])<<v,v+=8;for(u=m&C,c=r,h=a,A=3*(h+u),d=c[A];;){if(m>>=c[A+1],v-=c[A+1],0!=(16&d)){for(d&=15;v<d;)y--,m|=(255&l.next_in[_++])<<v,v+=8;if(S=c[A+2]+(m&g[d]),m>>=d,v-=d,w-=k,b>=S)T=b-S,s.window[b++]=s.window[T++],s.window[b++]=s.window[T++],k-=2;else{T=b-S;do{T+=s.end}while(T<0);if(d=s.end-T,k>d){if(k-=d,b-T>0&&d>b-T)do{s.window[b++]=s.window[T++]}while(0!=--d);else o(s.window,T,s.window,b,d),b+=d,T+=d,d=0;T=0}}do{s.window[b++]=s.window[T++]}while(0!=--k);break}if(0!=(64&d))return l.msg="invalid distance code",k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=m,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,-3;u+=c[A+2],u+=m&g[d],A=3*(h+u),d=c[A]}break}if(0!=(64&d))return 0!=(32&d)?(k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=m,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,p):(l.msg="invalid literal/length code",k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=m,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,-3);if(u+=c[A+2],u+=m&g[d],A=3*(h+u),0==(d=c[A])){m>>=c[A+1],v-=c[A+1],s.window[b++]=c[A+2],w--;break}}else m>>=c[A+1],v-=c[A+1],s.window[b++]=c[A+2],w--}while(w>=258&&y>=10);return k=l.avail_in-y,k=v>>3<k?v>>3:k,y+=k,_-=k,v-=k<<3,s.bitb=m,s.bitk=v,l.avail_in=y,l.total_in+=_-l.next_in_index,l.next_in_index=_,s.write=b,f},r.prototype.huft_build=function(t,e,i,n,r,a,s,l,u,c,d){var p,g,v,_,y,b,w,x,C,k,S,T,A,M,E;k=0,y=i;do{this.c[t[e+k]]++,k++,y--}while(0!=y);if(this.c[0]==i)return s[0]=-1,l[0]=0,f;for(x=l[0],b=1;b<=15&&0==this.c[b];b++);for(w=b,x<b&&(x=b),y=15;0!=y&&0==this.c[y];y--);for(v=y,x>y&&(x=y),l[0]=x,M=1<<b;b<y;b++,M<<=1)if((M-=this.c[b])<0)return-3;if((M-=this.c[y])<0)return-3;for(this.c[y]+=M,this.x[1]=b=0,k=1,A=2;0!=--y;)this.x[A]=b+=this.c[k],A++,k++;y=0,k=0;do{0!=(b=t[e+k])&&(this.v[this.x[b]++]=y),k++}while(++y<i);for(i=this.x[v],this.x[0]=y=0,k=0,_=-1,T=-x,this.u[0]=0,S=0,E=0;w<=v;w++)for(p=this.c[w];0!=p--;){for(;w>T+x;){if(_++,T+=x,E=v-T,E=E>x?x:E,(g=1<<(b=w-T))>p+1&&(g-=p+1,A=w,b<E))for(;++b<E&&!((g<<=1)<=this.c[++A]);)g-=this.c[A];if(E=1<<b,this.hn[0]+E>h)return-3;this.u[_]=S=this.hn[0],this.hn[0]+=E,0!=_?(this.x[_]=y,this.r[0]=b,this.r[1]=x,b=y>>>T-x,this.r[2]=S-this.u[_-1]-b,o(this.r,0,u,3*(this.u[_-1]+b),3)):s[0]=S}for(this.r[1]=w-T,k>=i?this.r[0]=192:d[k]<n?(this.r[0]=this.v[k]<256?0:96,this.r[2]=this.v[k++]):(this.r[0]=a[this.v[k]-n]+16+64,this.r[2]=r[this.v[k++]-n]),g=1<<w-T,b=y>>>T;b<E;b+=g)o(this.r,0,u,3*(S+b),3);for(b=1<<w-1;0!=(y&b);b>>>=1)y^=b;for(y^=b,C=(1<<T)-1;(y&C)!=this.x[_];)_--,T-=x,C=(1<<T)-1}return 0!=M&&1!=v?m:f},r.prototype.inflate_trees_bits=function(t,e,i,n,r){var a;return this.initWorkArea(19),this.hn[0]=0,a=this.huft_build(t,0,19,19,null,null,i,e,n,this.hn,this.v),-3==a?r.msg="oversubscribed dynamic bit lengths tree":a!=m&&0!=e[0]||(r.msg="incomplete dynamic bit lengths tree",a=-3),a},r.prototype.inflate_trees_dynamic=function(t,e,i,n,r,a,o,s,l){var u;return this.initWorkArea(288),this.hn[0]=0,(u=this.huft_build(i,0,t,257,x,C,a,n,s,this.hn,this.v))!=f||0==n[0]?(-3==u?l.msg="oversubscribed literal/length tree":-4!=u&&(l.msg="incomplete literal/length tree",u=-3),u):(this.initWorkArea(288),u=this.huft_build(i,t,e,0,k,S,o,r,s,this.hn,this.v),u!=f||0==r[0]&&t>257?(-3==u?l.msg="oversubscribed distance tree":u==m?(l.msg="incomplete distance tree",u=-3):-4!=u&&(l.msg="empty distance tree with lengths",u=-3),u):f)},r.prototype.initWorkArea=function(t){null==this.hn&&(this.hn=new Int32Array(1),this.v=new Int32Array(t),this.c=new Int32Array(16),this.r=new Int32Array(3),this.u=new Int32Array(15),this.x=new Int32Array(16)),this.v.length<t&&(this.v=new Int32Array(t));for(var e=0;e<t;e++)this.v[e]=0;for(var e=0;e<16;e++)this.c[e]=0;for(var e=0;e<3;e++)this.r[e]=0;o(this.c,0,this.u,0,15),o(this.c,0,this.x,0,16)};var M=new Uint8Array(1),E="function"==typeof M.subarray;return{inflateBuffer:u,arrayCopy:o}}.apply(e,n))&&(t.exports=r)},function(t,e,i){(function(n){var r,a,o;!function(n,s){a=[i(0)],r=s,void 0!==(o="function"==typeof r?r.apply(e,a):r)&&(t.exports=o)}(0,function(t){var e=t.ajaxSettings;e.responseFields.native="responseNative",e.converters["* native"]=!0;var i={},r=0,a={0:200,1223:204},o={},s=n.ajaxSettings.xhr();window.ActiveXObject&&t(window).on("unload",function(){for(var t in o)o[t]()}),i.cors=!!s&&"withCredentials"in s,i.ajax=s=!!s,t.ajaxTransport("native",function(t){var e;if(i.cors||s&&!t.crossDomain)return{send:function(i,n){var s,l=t.xhr(),u=++r,c={};if(l.open(t.type,t.url,t.async,t.username,t.password),t.xhrFields)for(s in t.xhrFields)l[s]=t.xhrFields[s];t.mimeType&&l.overrideMimeType&&l.overrideMimeType(t.mimeType),t.crossDomain||i["X-Requested-With"]||(i["X-Requested-With"]="XMLHttpRequest");for(s in i)l.setRequestHeader(s,i[s]);e=function(t){return function(){e&&(delete o[u],e=l.onload=l.onerror=null,"abort"===t?l.abort():"error"===t?n(l.status,l.statusText):(l.response&&(c.native=l.response),n(a[l.status]||l.status,l.statusText,c,l.getAllResponseHeaders())))}},l.onload=e(),l.onerror=e("error"),e=o[u]=e("abort");try{l.send(t.hasContent&&t.data||null)}catch(t){if(e)throw t}},abort:function(){e&&e()}}}),t.getNative=function(e,i){return t.ajax({dataType:"native",url:e,xhrFields:{responseType:"arraybuffer"},success:i})}})}).call(e,i(0))},function(t,e,i){"use strict";(function(t,n,r){function a(t){return t&&t.__esModule?t:{default:t}}Object.defineProperty(e,"__esModule",{value:!0});var o=i(5),s=a(o),l=i(3),u=a(l),c=t.View.extend(s.default.LoggableMixin).extend({_logNamespace:"user",options:{warnAtPercent:85,errorAtPercent:100},initialize:function(t){this.log(this+".initialize:",t),n.extend(this.options,t),this.listenTo(this.model,"change:quota_percent change:total_disk_usage",this.render)},update:function(t){return this.log(this+" updating user data...",t),this.model.loadFromApi(this.model.get("id"),t),this},isOverQuota:function(){return null!==this.model.get("quota_percent")&&this.model.get("quota_percent")>=this.options.errorAtPercent},_render_quota:function(){var t=this.model.toJSON(),e=t.quota_percent,i=r(this._templateQuotaMeter(t)),n=i.find(".progress-bar");return this.isOverQuota()?(n.attr("class","progress-bar progress-bar-danger"),i.find(".quota-meter-text").css("color","white"),this.trigger("quota:over",t)):e>=this.options.warnAtPercent?(n.attr("class","progress-bar progress-bar-warning"),this.trigger("quota:under quota:under:approaching",t)):(n.attr("class","progress-bar progress-bar-success"),this.trigger("quota:under quota:under:ok",t)),i},_render_usage:function(){var t=r(this._templateUsage(this.model.toJSON()));return this.log(this+".rendering usage:",t),t},render:function(){var t=null;return this.log(this+".model.quota_percent:",this.model.get("quota_percent")),t=null===this.model.get("quota_percent")||void 0===this.model.get("quota_percent")?this._render_usage():this._render_quota(),this.$el.html(t),this.$el.find(".quota-meter-text").tooltip(),this},_templateQuotaMeter:function(t){return['<div id="quota-meter" class="quota-meter progress">','<div class="progress-bar" style="width: ',t.quota_percent,'%"></div>','<div class="quota-meter-text" data-placement="left" style="top: 6px"',t.nice_total_disk_usage?' title="Using '+t.nice_total_disk_usage+'.  This value is recalculated when you log out.">':">",(0,u.default)("Using")," ",t.quota_percent,"%","</div>","</div>"].join("")},_templateUsage:function(t){return['<div id="quota-meter" class="quota-meter" style="background-color: transparent">','<div class="quota-meter-text" data-placement="left" data-original-title="This value is recalculated when you log out." style="top: 6px; color: white">',t.nice_total_disk_usage?(0,u.default)("Using ")+t.nice_total_disk_usage:"","</div>","</div>"].join("")},toString:function(){return"UserQuotaMeter("+this.model+")"}});e.default={UserQuotaMeter:c}}).call(e,i(2),i(1),i(0))}]);
\ No newline at end of file
diff --git a/static/scripts/mvc/tool/tool-form-base.js b/static/scripts/mvc/tool/tool-form-base.js
index d7d85b17870..41e8b18745b 100644
--- a/static/scripts/mvc/tool/tool-form-base.js
+++ b/static/scripts/mvc/tool/tool-form-base.js
@@ -1 +1 @@
-define("mvc/tool/tool-form-base",["exports","utils/localization","utils/utils","utils/deferred","mvc/ui/ui-misc","mvc/form/form-view","components/Citations.vue","libs/vue"],function(e,t,i,n,o,r,a,s){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var u=l(t),d=(l(i),l(n)),c=l(o),f=l(r),p=l(a),h=l(s);e.default=f.default.extend({initialize:function(e){var t=this;this.deferred=new d.default,f.default.prototype.initialize.call(this,e),this._update(this.model.get("initialmodel")),this.model.get("listen_to_history")&&parent.Galaxy&&parent.Galaxy.currHistoryPanel&&this.listenTo(parent.Galaxy.currHistoryPanel.collection,"change",function(){t.model.get("onchange")()}),this.$el.on("remove",function(){t._destroy()})},_update:function(e){var t=this;(e=e||this.model.get("buildmodel"))?(this.deferred.reset(),this.deferred.execute(function(i){e(i,t),i.then(function(){t._render()})})):this._render()},_destroy:function(){var e=this;this.$el.off().hide(),this.deferred.execute(function(){f.default.prototype.remove.call(e),Galaxy.emit.debug("tool-form-base::_destroy()","Destroy view.")})},_render:function(){var e=this,t=this.model.attributes;this.model.set({title:t.fixed_title||"<b>"+t.name+"</b> "+t.description+" (Galaxy Version "+t.version+")",operations:!t.hide_operations&&this._operations(),onchange:function(){e.deferred.reset(),e.deferred.execute(function(t){e.model.get("postchange")(t,e)})}}),this.render(),this.model.get("collapsible")||this.$el.append($("<div/>").addClass("ui-margin-top-large").append(this._footer())),this.show_message&&this.message.update({status:"success",message:"Now you are using '"+t.name+"' version "+t.version+", id '"+t.id+"'.",persistent:!1}),this.show_message=!0},_operations:function(){var e=this,t=this.model.attributes,i=new c.default.ButtonMenu({icon:"fa-cubes",title:!t.narrow&&"Versions"||null,tooltip:"Select another tool version"});if(!t.sustain_version&&t.versions&&t.versions.length>1)for(var n in t.versions){var o=t.versions[n];o!=t.version&&i.addMenu({title:"Switch to "+o,version:o,icon:"fa-cube",onclick:function(){e.model.set("id",t.id.replace(t.version,this.version)),e.model.set("version",this.version),e._update()}})}else i.$el.hide();var r=new c.default.ButtonMenu({id:"options",icon:"fa-caret-down",title:!t.narrow&&"Options"||null,tooltip:"View available options"});return t.biostar_url&&(r.addMenu({icon:"fa-question-circle",title:"Question?",onclick:function(){window.open(t.biostar_url+"/p/new/post/")}}),r.addMenu({icon:"fa-search",title:(0,u.default)("Search"),onclick:function(){window.open(t.biostar_url+"/local/search/page/?q="+t.name)}})),r.addMenu({icon:"fa-share",title:(0,u.default)("Share"),onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+Galaxy.root+"root?tool_id="+t.id)}}),Galaxy.user&&Galaxy.user.get("is_admin")&&r.addMenu({icon:"fa-download",title:(0,u.default)("Download"),onclick:function(){window.location.href=Galaxy.root+"api/tools/"+t.id+"/download"}}),t.requirements&&t.requirements.length>0&&r.addMenu({icon:"fa-info-circle",title:(0,u.default)("Requirements"),onclick:function(){!this.requirements_visible||e.portlet.collapsed?(this.requirements_visible=!0,e.portlet.expand(),e.message.update({persistent:!0,message:e._templateRequirements(t),status:"info"})):(this.requirements_visible=!1,e.message.update({message:""}))}}),t.sharable_url&&r.addMenu({icon:"fa-external-link",title:(0,u.default)("See in Tool Shed"),onclick:function(){window.open(t.sharable_url)}}),$.getJSON("/api/webhooks/tool-menu/all",function(e){_.each(e,function(e){e.activate&&e.config.function&&r.addMenu({icon:e.config.icon,title:e.config.title,onclick:function(){new Function("options",e.config.function)(t)}})})}),{menu:r,versions:i}},_footer:function(){var e=this.model.attributes,t=$("<div/>").append(this._templateHelp(e));if(e.citations){var i=h.default.extend(p.default),n=document.createElement("div");t.append(n),new i({propsData:{id:e.id,source:"tools"}}).$mount(n)}return t},_templateHelp:function(e){var t=$("<div/>").addClass("ui-form-help").append(e.help);return t.find("a").attr("target","_blank"),t},_templateRequirements:function(e){var t=e.requirements.length;if(t>0){var i="This tool requires ";_.each(e.requirements,function(e,n){i+=e.name+(e.version?" (Version "+e.version+")":"")+(n<t-2?", ":n==t-2?" and ":"")});var n=$("<a/>").attr("target","_blank").attr("href","https://galaxyproject.org/tools/requirements/").text("here");return $("<span/>").append(i+". Click ").append(n).append(" for more information.")}return"No requirements found."}})});
\ No newline at end of file
+define("mvc/tool/tool-form-base",["exports","utils/localization","utils/utils","utils/deferred","mvc/ui/ui-misc","mvc/form/form-view","components/Citations.vue","vue"],function(e,t,i,n,o,r,a,s){"use strict";function l(e){return e&&e.__esModule?e:{default:e}}Object.defineProperty(e,"__esModule",{value:!0});var u=l(t),d=(l(i),l(n)),c=l(o),f=l(r),p=l(a),h=l(s);e.default=f.default.extend({initialize:function(e){var t=this;this.deferred=new d.default,f.default.prototype.initialize.call(this,e),this._update(this.model.get("initialmodel")),this.model.get("listen_to_history")&&parent.Galaxy&&parent.Galaxy.currHistoryPanel&&this.listenTo(parent.Galaxy.currHistoryPanel.collection,"change",function(){t.model.get("onchange")()}),this.$el.on("remove",function(){t._destroy()})},_update:function(e){var t=this;(e=e||this.model.get("buildmodel"))?(this.deferred.reset(),this.deferred.execute(function(i){e(i,t),i.then(function(){t._render()})})):this._render()},_destroy:function(){var e=this;this.$el.off().hide(),this.deferred.execute(function(){f.default.prototype.remove.call(e),Galaxy.emit.debug("tool-form-base::_destroy()","Destroy view.")})},_render:function(){var e=this,t=this.model.attributes;this.model.set({title:t.fixed_title||"<b>"+t.name+"</b> "+t.description+" (Galaxy Version "+t.version+")",operations:!t.hide_operations&&this._operations(),onchange:function(){e.deferred.reset(),e.deferred.execute(function(t){e.model.get("postchange")(t,e)})}}),this.render(),this.model.get("collapsible")||this.$el.append($("<div/>").addClass("ui-margin-top-large").append(this._footer())),this.show_message&&this.message.update({status:"success",message:"Now you are using '"+t.name+"' version "+t.version+", id '"+t.id+"'.",persistent:!1}),this.show_message=!0},_operations:function(){var e=this,t=this.model.attributes,i=new c.default.ButtonMenu({icon:"fa-cubes",title:!t.narrow&&"Versions"||null,tooltip:"Select another tool version"});if(!t.sustain_version&&t.versions&&t.versions.length>1)for(var n in t.versions){var o=t.versions[n];o!=t.version&&i.addMenu({title:"Switch to "+o,version:o,icon:"fa-cube",onclick:function(){e.model.set("id",t.id.replace(t.version,this.version)),e.model.set("version",this.version),e._update()}})}else i.$el.hide();var r=new c.default.ButtonMenu({id:"options",icon:"fa-caret-down",title:!t.narrow&&"Options"||null,tooltip:"View available options"});return t.biostar_url&&(r.addMenu({icon:"fa-question-circle",title:"Question?",onclick:function(){window.open(t.biostar_url+"/p/new/post/")}}),r.addMenu({icon:"fa-search",title:(0,u.default)("Search"),onclick:function(){window.open(t.biostar_url+"/local/search/page/?q="+t.name)}})),r.addMenu({icon:"fa-share",title:(0,u.default)("Share"),onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+Galaxy.root+"root?tool_id="+t.id)}}),Galaxy.user&&Galaxy.user.get("is_admin")&&r.addMenu({icon:"fa-download",title:(0,u.default)("Download"),onclick:function(){window.location.href=Galaxy.root+"api/tools/"+t.id+"/download"}}),t.requirements&&t.requirements.length>0&&r.addMenu({icon:"fa-info-circle",title:(0,u.default)("Requirements"),onclick:function(){!this.requirements_visible||e.portlet.collapsed?(this.requirements_visible=!0,e.portlet.expand(),e.message.update({persistent:!0,message:e._templateRequirements(t),status:"info"})):(this.requirements_visible=!1,e.message.update({message:""}))}}),t.sharable_url&&r.addMenu({icon:"fa-external-link",title:(0,u.default)("See in Tool Shed"),onclick:function(){window.open(t.sharable_url)}}),$.getJSON("/api/webhooks/tool-menu/all",function(e){_.each(e,function(e){e.activate&&e.config.function&&r.addMenu({icon:e.config.icon,title:e.config.title,onclick:function(){new Function("options",e.config.function)(t)}})})}),{menu:r,versions:i}},_footer:function(){var e=this.model.attributes,t=$("<div/>").append(this._templateHelp(e));if(e.citations){var i=h.default.extend(p.default),n=document.createElement("div");t.append(n),new i({propsData:{id:e.id,source:"tools"}}).$mount(n)}return t},_templateHelp:function(e){var t=$("<div/>").addClass("ui-form-help").append(e.help);return t.find("a").attr("target","_blank"),t},_templateRequirements:function(e){var t=e.requirements.length;if(t>0){var i="This tool requires ";_.each(e.requirements,function(e,n){i+=e.name+(e.version?" (Version "+e.version+")":"")+(n<t-2?", ":n==t-2?" and ":"")});var n=$("<a/>").attr("target","_blank").attr("href","https://galaxyproject.org/tools/requirements/").text("here");return $("<span/>").append(i+". Click ").append(n).append(" for more information.")}return"No requirements found."}})});
\ No newline at end of file

From dda410da63ef26c7d86a40bd764adadb19cbbcd5 Mon Sep 17 00:00:00 2001
From: Peter Selten <peter.selten98@gmail.com>
Date: Tue, 12 Dec 2017 21:05:10 +0100
Subject: [PATCH 10/15] #3002 update to newer version of virtualenv.

---
 .../galaxy_install/tool_dependencies/recipe/step_handler.py     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py
index 196a0178607..f8dc0ee5cd7 100644
--- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py
+++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py
@@ -22,7 +22,7 @@ from tool_shed.util import basic_util, tool_dependency_util
 
 log = logging.getLogger(__name__)
 
-VIRTUALENV_URL = 'https://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.9.1.tar.gz'
+VIRTUALENV_URL = 'https://pypi.python.org/packages/d4/0c/9840c08189e030873387a73b90ada981885010dd9aea134d6de30cd24cb8/virtualenv-15.1.0.tar.gz'
 
 
 class CompressedFile(object):

From 099c1562febbcedee63a431b4314654df5e23301 Mon Sep 17 00:00:00 2001
From: John Chilton <jmchilton@gmail.com>
Date: Wed, 13 Dec 2017 10:20:11 -0500
Subject: [PATCH 11/15] Re-organize edge case upload options for my own
 clarity.

I think setting each of these variables once and simplifing the context they are used in (in the case of purge_upload) makes it more clear what each variable is and how it is set. I also think one, more detailed comment for each variable helps.

Note: This will break run-as-user uploads started prior to the upgrade to 18.XX and executed after the upgrade. It is a small switch to restore the old behavior but I'm not sure it is worth the complexity it adds to the file.

```
run_as_real_user = dataset.get('run_as_real_user', False) or dataset_get.('in_place', True)
```
---
 lib/galaxy/tools/actions/upload_common.py |  2 +-
 tools/data_source/upload.py               | 33 ++++++++++++++++-------
 2 files changed, 24 insertions(+), 11 deletions(-)

diff --git a/lib/galaxy/tools/actions/upload_common.py b/lib/galaxy/tools/actions/upload_common.py
index c612cddec80..ae70cae17de 100644
--- a/lib/galaxy/tools/actions/upload_common.py
+++ b/lib/galaxy/tools/actions/upload_common.py
@@ -448,7 +448,7 @@ def create_paramfile(trans, uploaded_datasets):
                         auto_decompress=getattr(uploaded_dataset, "auto_decompress", True),
                         purge_source=purge_source,
                         space_to_tab=uploaded_dataset.space_to_tab,
-                        in_place=trans.app.config.external_chown_script is None,
+                        run_as_real_user=trans.app.config.external_chown_script is None,
                         check_content=trans.app.config.check_upload_content,
                         path=uploaded_dataset.path)
             # TODO: This will have to change when we start bundling inputs.
diff --git a/tools/data_source/upload.py b/tools/data_source/upload.py
index feb95b5b231..7e9d06a1ebf 100644
--- a/tools/data_source/upload.py
+++ b/tools/data_source/upload.py
@@ -77,14 +77,29 @@ def add_file(dataset, registry, json_file, output_path):
     converted_path = None
     stdout = None
     link_data_only = dataset.get('link_data_only', 'copy_files')
-    run_as_real_user = in_place = dataset.get('in_place', True)
-    purge_source = dataset.get('purge_source', True)
-    # in_place is True if there is no external chmod in place,
-    # however there are other instances where modifications should not occur in_place:
-    # when a file is added from a directory on the local file system (ftp import folder or any other path).
-    if dataset.type in ('server_dir', 'path_paste', 'ftp_import'):
-        in_place = False
+
+    # run_as_real_user is estimated from galaxy config (external chmod indicated of inputs executed)
+    # If this is True we always purge supplied upload inputs so they are cleaned up and we reuse their
+    # paths during data conversions since this user already owns that path.
+    # Older in_place check for upload jobs created before 18.01, TODO remove in 19.XX. xref #5206
+    run_as_real_user = dataset.get('run_as_real_user', False) or dataset.get("in_place", False)
+
+    # purge_source is False if this is an FTP import and ftp_upload_purge has been overridden to False in Galaxy's config.
+    # This prevents us from deleting the user supplied paths in this case. We disable this behavior
+    # if running as the real user so the file can be cleaned up by Galaxy.
+    purge_source = dataset.get('purge_source', True) and not run_as_real_user
+
+    # in_place is True only if we are running as a real user and not importing external paths (i.e.
+    # this is a real upload and not a path paste or ftp import).
+    # In this case we try to reuse the uploaded file that has been chowned to this user already.
+    in_place = run_as_real_user and dataset.type not in ('server_dir', 'path_paste', 'ftp_import')
+
+    # Base on the check_upload_content Galaxy config option and on by default, this enables some
+    # security related checks on the uploaded content, but can prevent uploads from working in some cases.
     check_content = dataset.get('check_content' , True)
+
+    # auto_decompress is a request flag that can be swapped off to prevent Galaxy from automatically
+    # decompressing archive files before sniffing.
     auto_decompress = dataset.get('auto_decompress', True)
     try:
         ext = dataset.file_type
@@ -303,9 +318,7 @@ def add_file(dataset, registry, json_file, output_path):
             if e.errno != errno.EACCES:
                 raise
     elif link_data_only == 'copy_files':
-        if purge_source and not run_as_real_user:
-            # if the upload tool runs as a real user the real user
-            # can't move dataset.path as this path is owned by galaxy.
+        if purge_source:
             shutil.move(dataset.path, output_path)
         else:
             shutil.copy(dataset.path, output_path)

From 5043439df2ca694254623887d351905be1d9b698 Mon Sep 17 00:00:00 2001
From: John Chilton <jmchilton@gmail.com>
Date: Wed, 13 Dec 2017 16:04:49 -0500
Subject: [PATCH 12/15] Selenium - little pause to let extension form in upload
 dialog render.

xref https://github.com/galaxyproject/galaxy/issues/5169
---
 test/galaxy_selenium/navigates_galaxy.py | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/test/galaxy_selenium/navigates_galaxy.py b/test/galaxy_selenium/navigates_galaxy.py
index 1d20c179d9a..30a37e384b3 100644
--- a/test/galaxy_selenium/navigates_galaxy.py
+++ b/test/galaxy_selenium/navigates_galaxy.py
@@ -471,6 +471,9 @@ class NavigatesGalaxy(HasDriver):
 
         self.upload_queue_local_file(test_path)
 
+        # Having some problems with extension not being set properly.
+        self.sleep_for(WAIT_TYPES.UX_RENDER)
+
         if ext is not None:
             self.wait_for_selector_visible('.upload-extension')
             self.select2_set_value(".upload-extension", ext)

From 14259b11d9a5f6238153556ed5a28bf89468e2b4 Mon Sep 17 00:00:00 2001
From: Nicola Soranzo <nicola.soranzo@earlham.ac.uk>
Date: Wed, 13 Dec 2017 20:56:37 +0000
Subject: [PATCH 13/15] Python3: finish first pass on whole codebase

---
 .ci/py3_sources.txt                           | 84 -------------------
 .../demo/tour_generator/helper/__init__.py    |  2 +-
 lib/galaxy/containers/docker_swarm_manager.py |  4 +-
 lib/galaxy/datatypes/proteomics.py            |  4 +-
 lib/galaxy/jobs/handler.py                    |  8 +-
 lib/galaxy/jobs/runners/chronos.py            |  4 +-
 lib/galaxy/managers/hdas.py                   |  4 +-
 lib/galaxy/managers/workflows.py              |  8 +-
 lib/galaxy/openid/providers.py                |  8 +-
 lib/galaxy/tools/__init__.py                  |  2 +-
 lib/galaxy/tools/cwl/representation.py        |  8 +-
 lib/galaxy/tools/imp_exp/__init__.py          |  2 +-
 lib/galaxy/util/permutations.py               |  9 +-
 lib/galaxy/util/script.py                     |  2 +-
 .../visualization/data_providers/basic.py     |  2 +-
 .../visualization/data_providers/genome.py    | 20 ++---
 lib/galaxy/webapps/config_manage.py           |  7 +-
 lib/galaxy/webapps/galaxy/api/authenticate.py |  3 +-
 .../webapps/galaxy/api/configuration.py       |  2 +-
 lib/galaxy/webapps/galaxy/api/datasets.py     |  2 +-
 lib/galaxy/webapps/galaxy/api/datatypes.py    |  6 +-
 .../webapps/galaxy/api/folder_contents.py     |  2 +-
 .../webapps/galaxy/api/history_contents.py    |  4 +-
 lib/galaxy/webapps/galaxy/api/jobs.py         |  4 +-
 .../galaxy/api/tool_shed_repositories.py      |  6 +-
 lib/galaxy/webapps/galaxy/api/tools.py        | 19 +++--
 lib/galaxy/webapps/galaxy/api/toolshed.py     |  4 +-
 .../webapps/galaxy/controllers/admin.py       |  4 +-
 .../webapps/galaxy/controllers/async.py       |  8 +-
 .../galaxy/controllers/data_manager.py        |  2 +-
 .../webapps/galaxy/controllers/dataset.py     | 24 +++---
 lib/galaxy/webapps/galaxy/controllers/root.py |  2 +-
 lib/galaxy/webapps/galaxy/controllers/user.py |  4 +-
 .../webapps/galaxy/controllers/workflow.py    | 18 ++--
 .../webapps/tool_shed/api/repositories.py     |  4 +-
 .../webapps/tool_shed/controllers/admin.py    |  4 +-
 .../tool_shed/controllers/repository.py       |  8 +-
 .../webapps/tool_shed/security/__init__.py    |  4 +-
 .../webapps/tool_shed/util/hgweb_config.py    |  9 +-
 scripts/build_universe_config.py              |  3 +-
 scripts/data_libraries/build_lucene_index.py  |  8 +-
 scripts/galaxy-main                           |  7 +-
 scripts/helper.py                             |  3 +-
 scripts/loc_files/create_all_fasta_loc.py     | 31 ++-----
 scripts/microbes/create_bacteria_loc_file.py  | 22 ++---
 scripts/microbes/create_bacteria_table.py     | 34 ++++----
 scripts/microbes/create_nib_seq_loc_file.py   | 22 ++---
 scripts/microbes/get_builds_lengths.py        | 22 ++---
 scripts/microbes/harvest_bacteria.py          |  4 +-
 scripts/microbes/ncbi_to_ucsc.py              | 27 +++---
 scripts/microbes/util.py                      | 11 ++-
 scripts/others/incorrect_gops_jobs.py         |  4 +-
 scripts/others/incorrect_gops_join_jobs.py    |  4 +-
 scripts/paster.py                             |  5 +-
 scripts/set_dataset_sizes.py                  |  2 +-
 scripts/set_user_disk_usage.py                |  3 +-
 scripts/sync_reports_config.py                |  3 +-
 .../api/get_filtered_repository_revisions.py  |  4 +-
 .../bootstrap_tool_shed/bootstrap_util.py     | 10 +--
 .../create_user_with_api_key.py               |  8 +-
 scripts/tool_shed/check_download_urls.py      |  8 +-
 .../migrate_tools_to_repositories.py          |  6 +-
 scripts/transfer.py                           | 23 ++---
 scripts/update_shed_config_path.py            |  4 +-
 tools/genomespace/genomespace_importer.py     |  4 +-
 65 files changed, 259 insertions(+), 344 deletions(-)
 delete mode 100644 .ci/py3_sources.txt

diff --git a/.ci/py3_sources.txt b/.ci/py3_sources.txt
deleted file mode 100644
index 9f3df8c309d..00000000000
--- a/.ci/py3_sources.txt
+++ /dev/null
@@ -1,84 +0,0 @@
-client/galaxy/style/source_material/circle.py
-contrib/
-cron/
-doc/parse_gx_xsd.py
-doc/patch.py
-lib/galaxy/actions/
-lib/galaxy/auth/
-lib/galaxy/config.py
-lib/galaxy/containers/
-lib/galaxy/dataset_collections/
-lib/galaxy/datatypes/
-lib/galaxy/dependencies/
-lib/galaxy/eggs/
-lib/galaxy/exceptions/
-lib/galaxy/external_services/
-lib/galaxy/forms/
-lib/galaxy/jobs/
-lib/galaxy/managers/
-lib/galaxy/model/
-lib/galaxy/objectstore/
-lib/galaxy/openid/
-lib/galaxy/quota/
-lib/galaxy/sample_tracking/
-lib/galaxy/security/
-lib/galaxy/tags/
-lib/galaxy/tools/
-lib/galaxy/tours/
-lib/galaxy/util/
-lib/galaxy/visualization/
-lib/galaxy/web/
-lib/galaxy/webapps/galaxy/api/histories.py
-lib/galaxy/webapps/galaxy/api/library_datasets.py
-lib/galaxy/webapps/galaxy/api/tours.py
-lib/galaxy/webapps/galaxy/api/users.py
-lib/galaxy/webapps/galaxy/api/workflows.py
-lib/galaxy/webapps/galaxy/buildapp.py
-lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
-lib/galaxy/webapps/galaxy/controllers/external_services.py
-lib/galaxy/webapps/galaxy/controllers/forms.py
-lib/galaxy/webapps/galaxy/controllers/history.py
-lib/galaxy/webapps/galaxy/controllers/library_common.py
-lib/galaxy/webapps/galaxy/controllers/search.py
-lib/galaxy/webapps/galaxy/controllers/userskeys.py
-lib/galaxy/webapps/reports/config.py
-lib/galaxy/webapps/reports/controllers/tools.py
-lib/galaxy/webapps/reports/__init__.py
-lib/galaxy/webapps/tool_shed/config.py
-lib/galaxy/webapps/tool_shed/controllers/groups.py
-lib/galaxy/webapps/tool_shed/controllers/user.py
-lib/galaxy/webapps/tool_shed/framework/middleware/remoteuser.py
-lib/galaxy/webapps/tool_shed/__init__.py
-lib/galaxy/webapps/tool_shed/model/__init__.py
-lib/galaxy/webapps/tool_shed/search/repo_search.py
-lib/galaxy/webapps/tool_shed/util/ratings_util.py
-lib/galaxy/webhooks/
-lib/galaxy/work/
-lib/galaxy/workflow/
-lib/galaxy_ext/
-lib/log_tempfile.py
-lib/mimeparse.py
-lib/psyco_full.py
-lib/tool_shed/
-scripts/api/
-scripts/auth/
-scripts/bootstrap_history.py
-scripts/build_toolbox.py
-scripts/check_eggs.py
-scripts/check_galaxy.py
-scripts/check_python.py
-scripts/cleanup_datasets/
-scripts/communication/
-scripts/data_libraries/build_whoosh_index.py
-scripts/db_shell.py
-scripts/drmaa_external_runner.py
-scripts/metagenomics/
-scripts/microbes/BeautifulSoup.py
-scripts/microbes/harvest_bacteria.py
-scripts/secret_decoder_ring.py
-scripts/tool_shed/api/common.py
-scripts/tool_shed/build_ts_whoosh_index.py
-scripts/tool_shed/deprecate_repositories_without_metadata.py
-test/
-tool_list.py
-tools/
diff --git a/config/plugins/webhooks/demo/tour_generator/helper/__init__.py b/config/plugins/webhooks/demo/tour_generator/helper/__init__.py
index 932997f4a10..3d0c6e11c38 100644
--- a/config/plugins/webhooks/demo/tour_generator/helper/__init__.py
+++ b/config/plugins/webhooks/demo/tour_generator/helper/__init__.py
@@ -174,7 +174,7 @@ class TourGenerator(object):
             elif input.type == 'select':
                 params = []
                 if name in test_inputs:
-                    for option in self._tool.inputs[name].static_options:
+                    for option in input.static_options:
                         for test_option in self._test.inputs[name]:
                             if test_option == option[1]:
                                 params.append(option[0])
diff --git a/lib/galaxy/containers/docker_swarm_manager.py b/lib/galaxy/containers/docker_swarm_manager.py
index 9a937377f16..2cd6c64e522 100644
--- a/lib/galaxy/containers/docker_swarm_manager.py
+++ b/lib/galaxy/containers/docker_swarm_manager.py
@@ -46,7 +46,7 @@ SWARM_MANAGER_CONF_DEFAULTS = {
     'service_wait_count_limit': 0,
     'service_wait_time_limit': 5,
     'slots_min_limit': 0,
-    'slots_max_limit': sys.maxint,
+    'slots_max_limit': sys.maxsize,
     'slots_min_spare': 0,
     'node_idle_limit': 120,
     'limits': [],
@@ -137,7 +137,7 @@ class SwarmManager(object):
             state = node_state['state']
             if not nodes:
                 nodes = self._docker_interface.nodes()
-            node = (filter(lambda x: x.name == name, nodes) + [None])[0]
+            node = ([x for x in nodes if x.name == name] + [None])[0]
             if not node:
                 if elapsed > self._conf.spawn_wait_time:
                     log.warning("spawning node '%s' not found in `docker node ls` and spawn_wait_time exceeded! %d seconds have elapsed", name, elapsed)
diff --git a/lib/galaxy/datatypes/proteomics.py b/lib/galaxy/datatypes/proteomics.py
index a50afb720dd..2ca7ff891f3 100644
--- a/lib/galaxy/datatypes/proteomics.py
+++ b/lib/galaxy/datatypes/proteomics.py
@@ -449,7 +449,7 @@ class ImzML(Binary):
     def generate_primary_file(self, dataset=None):
         rval = ['<html><head><title>imzML Composite Dataset </title></head><p/>']
         rval.append('<div>This composite dataset is composed of the following files:<p/><ul>')
-        for composite_name, composite_file in self.get_composite_files(dataset=dataset).iteritems():
+        for composite_name, composite_file in self.get_composite_files(dataset=dataset).items():
             fn = composite_name
             opt_text = ''
             if composite_file.get('description'):
@@ -493,7 +493,7 @@ class Analyze75(Binary):
     def generate_primary_file(self, dataset=None):
         rval = ['<html><head><title>Analyze75 Composite Dataset.</title></head><p/>']
         rval.append('<div>This composite dataset is composed of the following files:<p/><ul>')
-        for composite_name, composite_file in self.get_composite_files(dataset=dataset).iteritems():
+        for composite_name, composite_file in self.get_composite_files(dataset=dataset).items():
             fn = composite_name
             opt_text = ''
             if composite_file.optional:
diff --git a/lib/galaxy/jobs/handler.py b/lib/galaxy/jobs/handler.py
index 86cdd868870..80585c103d6 100644
--- a/lib/galaxy/jobs/handler.py
+++ b/lib/galaxy/jobs/handler.py
@@ -5,11 +5,11 @@ import datetime
 import logging
 import os
 import time
-from Queue import (
+
+from six.moves.queue import (
     Empty,
     Queue
 )
-
 from sqlalchemy.sql.expression import (
     and_,
     func,
@@ -343,7 +343,7 @@ class JobHandlerQueue(Monitors, object):
         if not self.track_jobs_in_database:
             self.waiting_jobs = new_waiting_jobs
         # Remove cached wrappers for any jobs that are no longer being tracked
-        for id in self.job_wrappers.keys():
+        for id in list(self.job_wrappers.keys()):
             if id not in new_waiting_jobs:
                 del self.job_wrappers[id]
         # Flush, if we updated the state
@@ -896,7 +896,7 @@ class DefaultJobDispatcher(object):
             job_wrapper.fail(DEFAULT_JOB_PUT_FAILURE_MESSAGE)
 
     def shutdown(self):
-        for runner in self.job_runners.itervalues():
+        for runner in self.job_runners.values():
             try:
                 runner.shutdown()
             except Exception:
diff --git a/lib/galaxy/jobs/runners/chronos.py b/lib/galaxy/jobs/runners/chronos.py
index e7450bd222b..900658a4057 100644
--- a/lib/galaxy/jobs/runners/chronos.py
+++ b/lib/galaxy/jobs/runners/chronos.py
@@ -232,7 +232,7 @@ class ChronosJobRunner(AsynchronousJobRunner):
 
     def parse_destination_params(self, params):
         parsed_params = {}
-        for k, spec in self.DESTINATION_PARAMS_SPEC.iteritems():
+        for k, spec in self.DESTINATION_PARAMS_SPEC.items():
             value = params.get(k, spec.get('default'))
             map_to = spec.get('map_name')
             mapper = spec.get('map')
@@ -264,7 +264,7 @@ class ChronosJobRunner(AsynchronousJobRunner):
 
     def _retrieve_job(self, job_id):
         jobs = self._chronos_client.list()
-        job = filter((lambda x: x['name'] == job_id), jobs)
+        job = [x for x in jobs if x['name'] == job_id]
         if len(job) > 1:
             msg = 'Multiple jobs found with name {name!r}'.format(name=job_id)
             LOGGER.error(msg)
diff --git a/lib/galaxy/managers/hdas.py b/lib/galaxy/managers/hdas.py
index d17b5424e61..29ccd342b24 100644
--- a/lib/galaxy/managers/hdas.py
+++ b/lib/galaxy/managers/hdas.py
@@ -373,10 +373,10 @@ class HDASerializer(  # datasets._UnflattenedMetadataDatasetAssociationSerialize
         Return dictionary containing new-style display app urls.
         """
         display_apps = []
-        for display_app in hda.get_display_applications(trans).itervalues():
+        for display_app in hda.get_display_applications(trans).values():
 
             app_links = []
-            for link_app in display_app.links.itervalues():
+            for link_app in display_app.links.values():
                 app_links.append({
                     'target': link_app.url.get('target_frame', '_blank'),
                     'href': link_app.get_display_url(hda, trans),
diff --git a/lib/galaxy/managers/workflows.py b/lib/galaxy/managers/workflows.py
index 8c9b98b5047..5ae865ae0b3 100644
--- a/lib/galaxy/managers/workflows.py
+++ b/lib/galaxy/managers/workflows.py
@@ -413,7 +413,7 @@ class WorkflowContentsManager(UsesAnnotations):
             else:
                 inputs = step.module.get_runtime_inputs(connections=step.output_connections)
                 step_model = {
-                    'inputs' : [input.to_dict(trans) for input in inputs.itervalues()]
+                    'inputs' : [input.to_dict(trans) for input in inputs.values()]
                 }
             step_model['step_type'] = step.type
             step_model['step_label'] = step.label
@@ -713,7 +713,7 @@ class WorkflowContentsManager(UsesAnnotations):
             # tools. This should be removed at some point. Mirrored
             # hack in _workflow_from_dict should never be removed so
             # existing workflow exports continue to function.
-            for input_name, input_conn in dict(input_conn_dict).iteritems():
+            for input_name, input_conn in dict(input_conn_dict).items():
                 if len(input_conn) == 1:
                     input_conn_dict[input_name] = input_conn[0]
             step_dict['input_connections'] = input_conn_dict
@@ -790,7 +790,7 @@ class WorkflowContentsManager(UsesAnnotations):
         supplied_steps = data['steps']
         # Try to iterate through imported workflow in such a way as to
         # preserve step order.
-        step_indices = supplied_steps.keys()
+        step_indices = list(supplied_steps.keys())
         try:
             step_indices = sorted(step_indices, key=int)
         except ValueError:
@@ -927,7 +927,7 @@ class WorkflowContentsManager(UsesAnnotations):
         """
         for step in steps:
             # Input connections
-            for input_name, conn_list in step.temp_input_connections.iteritems():
+            for input_name, conn_list in step.temp_input_connections.items():
                 if not conn_list:
                     continue
                 if not isinstance(conn_list, list):  # Older style singleton connection
diff --git a/lib/galaxy/openid/providers.py b/lib/galaxy/openid/providers.py
index 5885167a095..39e51a0275f 100644
--- a/lib/galaxy/openid/providers.py
+++ b/lib/galaxy/openid/providers.py
@@ -4,6 +4,8 @@ Contains OpenID provider functionality
 import logging
 import os
 
+import six
+
 from galaxy.util import parse_xml, string_as_bool
 from galaxy.util.odict import odict
 
@@ -87,7 +89,7 @@ class OpenIDProvider(object):
 
     def post_authentication(self, trans, openid_manager, info):
         sreg_attributes = openid_manager.get_sreg(info)
-        for store_pref_name, store_pref_value_name in self.store_user_preference.iteritems():
+        for store_pref_name, store_pref_value_name in self.store_user_preference.items():
             if store_pref_value_name in (self.sreg_optional + self.sreg_required):
                 trans.user.preferences[store_pref_name] = sreg_attributes.get(store_pref_value_name)
             else:
@@ -129,10 +131,10 @@ class OpenIDProviders(object):
             self.providers = providers
         else:
             self.providers = odict()
-        self._banned_identifiers = [provider.op_endpoint_url for provider in self.providers.itervalues() if provider.never_associate_with_user]
+        self._banned_identifiers = [provider.op_endpoint_url for provider in self.providers.values() if provider.never_associate_with_user]
 
     def __iter__(self):
-        for provider in self.providers.itervalues():
+        for provider in six.itervalues(self.providers):
             yield provider
 
     def get(self, name, default=None):
diff --git a/lib/galaxy/tools/__init__.py b/lib/galaxy/tools/__init__.py
index 660f4786963..52b42f94fdf 100755
--- a/lib/galaxy/tools/__init__.py
+++ b/lib/galaxy/tools/__init__.py
@@ -339,7 +339,7 @@ class DefaultToolState(object):
         """
         self.inputs = {}
         context = ExpressionContext(self.inputs)
-        for input in tool.inputs.itervalues():
+        for input in tool.inputs.values():
             self.inputs[input.name] = input.get_initial_value(trans, context)
 
     def encode(self, tool, app, nested=False):
diff --git a/lib/galaxy/tools/cwl/representation.py b/lib/galaxy/tools/cwl/representation.py
index a67574cac7a..36b16003258 100644
--- a/lib/galaxy/tools/cwl/representation.py
+++ b/lib/galaxy/tools/cwl/representation.py
@@ -78,9 +78,9 @@ def to_cwl_job(tool, param_dict, local_working_directory):
         else:
             return str(param_dict_value)
 
-    for input_name, input in inputs.iteritems():
+    for input_name, input in inputs.items():
         if input.type == "repeat":
-            only_input = input.inputs.values()[0]
+            only_input = next(iter(input.inputs.values()))
             array_value = []
             for instance in param_dict[input_name]:
                 array_value.append(simple_value(only_input, instance[input_name[:-len("_repeat")]]))
@@ -112,7 +112,7 @@ def to_galaxy_parameters(tool, as_dict):
         else:
             return param_dict_value
 
-    for input_name, input in inputs.iteritems():
+    for input_name, input in inputs.items():
         as_dict_value = as_dict.get(input_name, NOT_PRESENT)
         galaxy_input_type = input.type
 
@@ -120,7 +120,7 @@ def to_galaxy_parameters(tool, as_dict):
             if input_name not in as_dict:
                 continue
 
-            only_input = input.inputs.values()[0]
+            only_input = next(iter(input.inputs.values()))
             for index, value in enumerate(as_dict_value):
                 key = "%s_repeat_0|%s" % (input_name, only_input.name)
                 galaxy_value = from_simple_value(only_input, value)
diff --git a/lib/galaxy/tools/imp_exp/__init__.py b/lib/galaxy/tools/imp_exp/__init__.py
index cf7bbfc0946..d6e91ea6af1 100644
--- a/lib/galaxy/tools/imp_exp/__init__.py
+++ b/lib/galaxy/tools/imp_exp/__init__.py
@@ -240,7 +240,7 @@ class JobImportHistoryArchiveWrapper(object, UsesAnnotations):
 
                     # Set parameters. May be useful to look at metadata.py for creating parameters.
                     # TODO: there may be a better way to set parameters, e.g.:
-                    #   for name, value in tool.params_to_strings( incoming, trans.app ).iteritems():
+                    #   for name, value in tool.params_to_strings( incoming, trans.app ).items():
                     #       job.add_parameter( name, value )
                     # to make this work, we'd need to flesh out the HDA objects. The code below is
                     # relatively similar.
diff --git a/lib/galaxy/util/permutations.py b/lib/galaxy/util/permutations.py
index b153bc2f0dd..c69061afba3 100644
--- a/lib/galaxy/util/permutations.py
+++ b/lib/galaxy/util/permutations.py
@@ -39,13 +39,12 @@ def expand_multi_inputs(inputs, classifier, key_filter=None):
 
 def __split_inputs(inputs, classifier, key_filter):
     key_filter = key_filter or (lambda x: True)
-    input_keys = filter(key_filter, inputs)
 
     single_inputs = {}
     matched_multi_inputs = {}
     multiplied_multi_inputs = {}
 
-    for input_key in input_keys:
+    for input_key in filter(key_filter, inputs):
         input_type, expanded_val = classifier(input_key)
         if input_type == input_classification.SINGLE:
             single_inputs[input_key] = expanded_val
@@ -73,14 +72,14 @@ def __extend_with_matched_combos(single_inputs, multi_inputs):
 
     matched_multi_inputs = []
 
-    first_multi_input_key = multi_inputs.keys()[0]
+    first_multi_input_key = next(iter(multi_inputs.keys()))
     first_multi_value = multi_inputs.get(first_multi_input_key)
 
     for value in first_multi_value:
         new_inputs = __copy_and_extend_inputs(single_inputs, first_multi_input_key, value)
         matched_multi_inputs.append(new_inputs)
 
-    for multi_input_key, multi_input_values in multi_inputs.iteritems():
+    for multi_input_key, multi_input_values in multi_inputs.items():
         if multi_input_key == first_multi_input_key:
             continue
         if len(multi_input_values) != len(first_multi_value):
@@ -95,7 +94,7 @@ def __extend_with_matched_combos(single_inputs, multi_inputs):
 def __extend_with_multiplied_combos(input_combos, multi_inputs):
     combos = input_combos
 
-    for multi_input_key, multi_input_value in multi_inputs.iteritems():
+    for multi_input_key, multi_input_value in multi_inputs.items():
         iter_combos = []
 
         for combo in combos:
diff --git a/lib/galaxy/util/script.py b/lib/galaxy/util/script.py
index 4e72a0cf67e..b227cff8344 100644
--- a/lib/galaxy/util/script.py
+++ b/lib/galaxy/util/script.py
@@ -42,7 +42,7 @@ def _app_properties(args):
 def _arg_parser():
     parser = argparse.ArgumentParser(description=DESCRIPTION)
     parser.add_argument('action', metavar='ACTION', type=str,
-                        choices=ACTIONS.keys(),
+                        choices=list(ACTIONS.keys()),
                         default=DEFAULT_ACTION,
                         nargs='?' if DEFAULT_ACTION is not None else None,
                         help='action to perform')
diff --git a/lib/galaxy/visualization/data_providers/basic.py b/lib/galaxy/visualization/data_providers/basic.py
index 15a3106c5a0..728b448a617 100644
--- a/lib/galaxy/visualization/data_providers/basic.py
+++ b/lib/galaxy/visualization/data_providers/basic.py
@@ -37,7 +37,7 @@ class BaseDataProvider(object):
         """
         raise Exception("Unimplemented Function")
 
-    def get_data(self, chrom, start, end, start_val=0, max_vals=sys.maxint, **kwargs):
+    def get_data(self, chrom, start, end, start_val=0, max_vals=sys.maxsize, **kwargs):
         """
         Returns data as specified by kwargs. start_val is the first element to
         return and max_vals indicates the number of values to return.
diff --git a/lib/galaxy/visualization/data_providers/genome.py b/lib/galaxy/visualization/data_providers/genome.py
index d78fbccadc5..7bdae81b3ec 100644
--- a/lib/galaxy/visualization/data_providers/genome.py
+++ b/lib/galaxy/visualization/data_providers/genome.py
@@ -44,8 +44,8 @@ def get_bounds(reads, start_pos_index, end_pos_index):
     '''
     Returns the minimum and maximum position for a set of reads.
     '''
-    max_low = sys.maxint
-    max_high = -sys.maxint
+    max_low = sys.maxsize
+    max_high = -sys.maxsize
     for read in reads:
         if read[start_pos_index] < max_low:
             max_low = read[start_pos_index]
@@ -182,7 +182,7 @@ class GenomeDataProvider(BaseDataProvider):
         """
         raise Exception("Unimplemented Function")
 
-    def get_data(self, chrom=None, low=None, high=None, start_val=0, max_vals=sys.maxint, **kwargs):
+    def get_data(self, chrom=None, low=None, high=None, start_val=0, max_vals=sys.maxsize, **kwargs):
         """
         Returns data in region defined by chrom, start, and end. start_val and
         max_vals are used to denote the data to return: start_val is the first element to
@@ -233,7 +233,7 @@ class GenomeDataProvider(BaseDataProvider):
             column_names = self.original_dataset.datatype.column_names
         except AttributeError:
             try:
-                column_names = range(self.original_dataset.metadata.columns)
+                column_names = list(range(self.original_dataset.metadata.columns))
             except Exception:  # Give up
                 return []
 
@@ -511,7 +511,7 @@ class BedDataProvider(GenomeDataProvider):
             if length >= 12:
                 block_sizes = [int(n) for n in feature[10].split(',') if n != '']
                 block_starts = [int(n) for n in feature[11].split(',') if n != '']
-                blocks = zip(block_sizes, block_starts)
+                blocks = list(zip(block_sizes, block_starts))
                 payload.append([(int(feature[1]) + block[1], int(feature[1]) + block[1] + block[0]) for block in blocks])
 
             # Score (filter data)
@@ -1022,7 +1022,7 @@ class BamDataProvider(GenomeDataProvider, FilterableMixin):
                 count += 1
 
         # Take care of reads whose mates are out of range.
-        for qname, read in paired_pending.iteritems():
+        for qname, read in paired_pending.items():
             if read['mate_start'] < read['start']:
                 # Mate is before read.
                 read_start = read['mate_start']
@@ -1286,7 +1286,7 @@ class IntervalIndexDataProvider(FilterableMixin, GenomeDataProvider):
                         out.write(line)
                     else:
                         reader = GFFReaderWrapper(source, fix_strand=True)
-                        feature = reader.next()
+                        feature = next(reader)
                         for interval in feature.intervals:
                             out.write('\t'.join(interval.fields) + '\n')
 
@@ -1328,7 +1328,7 @@ class IntervalIndexDataProvider(FilterableMixin, GenomeDataProvider):
 
                 # GFF dataset.
                 reader = GFFReaderWrapper(source, fix_strand=True)
-                feature = reader.next()
+                feature = next(reader)
                 payload = package_gff_feature(feature, no_detail, filter_cols)
                 payload.insert(0, offset)
 
@@ -1604,7 +1604,7 @@ class ChromatinInteractionsDataProvider(GenomeDataProvider):
 
 
 class ChromatinInteractionsTabixDataProvider(TabixDataProvider, ChromatinInteractionsDataProvider):
-    def get_iterator(self, data_file, chrom, start=0, end=sys.maxint, interchromosomal=False, **kwargs):
+    def get_iterator(self, data_file, chrom, start=0, end=sys.maxsize, interchromosomal=False, **kwargs):
         """
         """
         # Modify start as needed to get earlier interactions with start region.
@@ -1661,7 +1661,7 @@ def package_gff_feature(feature, no_detail=False, filter_cols=[]):
     # Add blocks.
     block_sizes = [(interval.end - interval.start) for interval in feature_intervals]
     block_starts = [(interval.start - feature.start) for interval in feature_intervals]
-    blocks = zip(block_sizes, block_starts)
+    blocks = list(zip(block_sizes, block_starts))
     payload.append([(feature.start + block[1], feature.start + block[1] + block[0]) for block in blocks])
 
     # Add filter data to payload.
diff --git a/lib/galaxy/webapps/config_manage.py b/lib/galaxy/webapps/config_manage.py
index 695500a9cff..fd66ed2b99c 100644
--- a/lib/galaxy/webapps/config_manage.py
+++ b/lib/galaxy/webapps/config_manage.py
@@ -1,5 +1,4 @@
-from __future__ import absolute_import
-from __future__ import print_function
+from __future__ import absolute_import, print_function
 
 import argparse
 import copy
@@ -268,7 +267,7 @@ def main(argv=None):
 def _arg_parser():
     parser = argparse.ArgumentParser(description=DESCRIPTION)
     parser.add_argument('action', metavar='ACTION', type=str,
-                        choices=ACTIONS.keys(),
+                        choices=list(ACTIONS.keys()),
                         help='action to perform')
     parser.add_argument('app', metavar='APP', type=str, nargs="?",
                         help=APP_DESCRIPTION)
@@ -691,7 +690,7 @@ def _ordered_dump(data, stream=None, Dumper=yaml.Dumper, **kwds):
     def _dict_representer(dumper, data):
         return dumper.represent_mapping(
             yaml.resolver.BaseResolver.DEFAULT_MAPPING_TAG,
-            data.items())
+            list(data.items()))
     OrderedDumper.add_representer(OrderedDict, _dict_representer)
     return yaml.dump(data, stream, OrderedDumper, **kwds)
 
diff --git a/lib/galaxy/webapps/galaxy/api/authenticate.py b/lib/galaxy/webapps/galaxy/api/authenticate.py
index 59995ef91e6..0129000457a 100644
--- a/lib/galaxy/webapps/galaxy/api/authenticate.py
+++ b/lib/galaxy/webapps/galaxy/api/authenticate.py
@@ -12,7 +12,8 @@ Returns:
 """
 import logging
 from base64 import b64decode
-from urllib import unquote
+
+from six.moves.urllib.parse import unquote
 
 from galaxy import exceptions
 from galaxy.managers import api_keys
diff --git a/lib/galaxy/webapps/galaxy/api/configuration.py b/lib/galaxy/webapps/galaxy/api/configuration.py
index 25f4f8d9e96..0568254b3c8 100644
--- a/lib/galaxy/webapps/galaxy/api/configuration.py
+++ b/lib/galaxy/webapps/galaxy/api/configuration.py
@@ -88,7 +88,7 @@ class ConfigurationController(BaseAPIController):
     @require_admin
     def dynamic_tool_confs(self, trans):
         confs = self.app.toolbox.dynamic_confs(include_migrated_tool_conf=True)
-        return map(_tool_conf_to_dict, confs)
+        return list(map(_tool_conf_to_dict, confs))
 
     @expose_api
     @require_admin
diff --git a/lib/galaxy/webapps/galaxy/api/datasets.py b/lib/galaxy/webapps/galaxy/api/datasets.py
index f4e03132947..42db54f37c0 100644
--- a/lib/galaxy/webapps/galaxy/api/datasets.py
+++ b/lib/galaxy/webapps/galaxy/api/datasets.py
@@ -383,5 +383,5 @@ class DatasetsController(BaseAPIController, UsesVisualizationMixin):
             return converted
 
         except model.NoConverterException:
-            exc_data = dict(source=original.ext, target=target_ext, available=original.get_converter_types().keys())
+            exc_data = dict(source=original.ext, target=target_ext, available=list(original.get_converter_types().keys()))
             raise galaxy_exceptions.RequestParameterInvalidException('Conversion not possible', **exc_data)
diff --git a/lib/galaxy/webapps/galaxy/api/datatypes.py b/lib/galaxy/webapps/galaxy/api/datatypes.py
index 2bb8ab6c849..7de90de0b1d 100644
--- a/lib/galaxy/webapps/galaxy/api/datatypes.py
+++ b/lib/galaxy/webapps/galaxy/api/datatypes.py
@@ -42,7 +42,7 @@ class DatatypesController(BaseAPIController):
                     if extension in datatypes_registry.datatypes_by_extension:
                         composite_files = datatypes_registry.datatypes_by_extension[extension].composite_files
                         if composite_files:
-                            dictionary['composite_files'] = [_.dict() for _ in composite_files.itervalues()]
+                            dictionary['composite_files'] = [_.dict() for _ in composite_files.values()]
                     rval.append(dictionary)
                 return rval
         except Exception as exception:
@@ -61,7 +61,7 @@ class DatatypesController(BaseAPIController):
         try:
             ext_to_class_name = dict()
             classes = []
-            for k, v in self._datatypes_registry.datatypes_by_extension.iteritems():
+            for k, v in self._datatypes_registry.datatypes_by_extension.items():
                 c = v.__class__
                 ext_to_class_name[k] = c.__module__ + "." + c.__name__
                 classes.append(c)
@@ -109,7 +109,7 @@ class DatatypesController(BaseAPIController):
     @expose_api_anonymous_and_sessionless
     def converters(self, trans, **kwd):
         converters = []
-        for (source_type, targets) in self._datatypes_registry.datatype_converters.iteritems():
+        for (source_type, targets) in self._datatypes_registry.datatype_converters.items():
             for target_type in targets:
                 converters.append({
                     'source': source_type,
diff --git a/lib/galaxy/webapps/galaxy/api/folder_contents.py b/lib/galaxy/webapps/galaxy/api/folder_contents.py
index 22bcbbb3c82..041892c726b 100644
--- a/lib/galaxy/webapps/galaxy/api/folder_contents.py
+++ b/lib/galaxy/webapps/galaxy/api/folder_contents.py
@@ -92,7 +92,7 @@ class FolderContentsController(BaseAPIController, UsesLibraryMixin, UsesLibraryM
                 if content_item.description:
                     return_item.update(dict(description=content_item.description))
 
-            if content_item.api_type == 'file':
+            elif content_item.api_type == 'file':
                 #  Is the dataset public or private?
                 #  When both are False the dataset is 'restricted'
                 #  Access rights are checked on the dataset level, not on the ld or ldda level to maintain consistency
diff --git a/lib/galaxy/webapps/galaxy/api/history_contents.py b/lib/galaxy/webapps/galaxy/api/history_contents.py
index 9b11f561780..ef73f4fffe3 100644
--- a/lib/galaxy/webapps/galaxy/api/history_contents.py
+++ b/lib/galaxy/webapps/galaxy/api/history_contents.py
@@ -96,7 +96,7 @@ class HistoryContentsController(BaseAPIController, UsesLibraryMixin, UsesLibrary
 
         contents_kwds = {'types': types}
         if ids:
-            ids = map(lambda id: self.decode_id(id), ids.split(','))
+            ids = [self.decode_id(id) for id in ids.split(',')]
             contents_kwds['ids'] = ids
             # If explicit ids given, always used detailed result.
             details = 'all'
@@ -209,7 +209,7 @@ class HistoryContentsController(BaseAPIController, UsesLibraryMixin, UsesLibrary
         else:
             ids = util.listify(ids)
             types = util.listify(types)
-        return map(lambda s: self.encode_all_ids(trans, s), fetch_job_states(self.app, trans.sa_session, ids, types))
+        return [self.encode_all_ids(trans, s) for s in fetch_job_states(self.app, trans.sa_session, ids, types)]
 
     @expose_api_anonymous
     def show_jobs_summary(self, trans, id, history_id, **kwd):
diff --git a/lib/galaxy/webapps/galaxy/api/jobs.py b/lib/galaxy/webapps/galaxy/api/jobs.py
index 75af1d5d5fb..e92dd35c402 100644
--- a/lib/galaxy/webapps/galaxy/api/jobs.py
+++ b/lib/galaxy/webapps/galaxy/api/jobs.py
@@ -231,7 +231,7 @@ class JobController(BaseAPIController, UsesLibraryMixinItems):
     def __dictify_associations(self, trans, *association_lists):
         rval = []
         for association_list in association_lists:
-            rval.extend(map(lambda a: self.__dictify_association(trans, a), association_list))
+            rval.extend(self.__dictify_association(trans, a) for a in association_list)
         return rval
 
     def __dictify_association(self, trans, job_dataset_association):
@@ -293,7 +293,7 @@ class JobController(BaseAPIController, UsesLibraryMixinItems):
             raise exceptions.ObjectAttributeMissingException("No inputs defined")
         inputs = payload.get('inputs', {})
         # Find files coming in as multipart file data and add to inputs.
-        for k, v in payload.iteritems():
+        for k, v in payload.items():
             if k.startswith('files_') or k.startswith('__files_'):
                 inputs[k] = v
         request_context = WorkRequestContext(app=trans.app, user=trans.user, history=trans.history)
diff --git a/lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py b/lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py
index 60f6e4833af..5b9d43bb134 100644
--- a/lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py
+++ b/lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py
@@ -253,8 +253,8 @@ class ToolShedRepositoriesController(BaseAPIController):
                 # this is ever not the case, this code will need to be updated.
                 tool_shed_url = common_util.get_tool_shed_url_from_tool_shed_registry(self.app, tool_ids[0].split('/')[0])
             found_repository = json.loads(util.url_get(tool_shed_url, params=dict(tool_ids=','.join(tool_ids)), pathspec=['api', 'repositories']))
-            fr_keys = found_repository.keys()
-            tsr_id = found_repository[fr_keys[0]]['repository_id']
+            fr_first_key = next(iter(found_repository.keys()))
+            tsr_id = found_repository[fr_first_key]['repository_id']
             repository_data['current_changeset'] = found_repository['current_changeset']
             repository_data['repository'] = json.loads(util.url_get(tool_shed_url, pathspec=['api', 'repositories', tsr_id]))
             del found_repository['current_changeset']
@@ -537,7 +537,7 @@ class ToolShedRepositoriesController(BaseAPIController):
                                                            id=trans.security.encode_id(tool_shed_repository.id))
             return tool_shed_repository_dict
         if installed_tool_shed_repositories:
-            return map(to_dict, installed_tool_shed_repositories)
+            return list(map(to_dict, installed_tool_shed_repositories))
         message = "No repositories were installed, possibly because the selected repository has already been installed."
         return dict(status="ok", message=message)
 
diff --git a/lib/galaxy/webapps/galaxy/api/tools.py b/lib/galaxy/webapps/galaxy/api/tools.py
index 691531d3c92..41578548888 100644
--- a/lib/galaxy/webapps/galaxy/api/tools.py
+++ b/lib/galaxy/webapps/galaxy/api/tools.py
@@ -1,7 +1,8 @@
 import logging
-import urllib
 from json import dumps
 
+from six.moves.urllib.parse import unquote_plus
+
 import galaxy.queue_worker
 from galaxy import exceptions, managers, util, web
 from galaxy.managers.collections_util import dictify_dataset_collection_instance
@@ -201,7 +202,7 @@ class ToolsController(BaseAPIController, UsesVisualizationMixin):
             lineage_dict = None
         tool_shed_dependencies = tool.installed_tool_dependencies
         if tool_shed_dependencies:
-            tool_shed_dependencies_dict = map(to_dict, tool_shed_dependencies)
+            tool_shed_dependencies_dict = list(map(to_dict, tool_shed_dependencies))
         else:
             tool_shed_dependencies_dict = None
         return {
@@ -209,7 +210,7 @@ class ToolsController(BaseAPIController, UsesVisualizationMixin):
             "tool_version": tool.version,
             "dependency_shell_commands": tool.build_dependency_shell_commands(),
             "lineage": lineage_dict,
-            "requirements": map(to_dict, tool.requirements),
+            "requirements": list(map(to_dict, tool.requirements)),
             "installed_tool_shed_dependencies": tool_shed_dependencies_dict,
             "tool_dir": tool.tool_dir,
             "tool_shed": tool.tool_shed,
@@ -326,19 +327,19 @@ class ToolsController(BaseAPIController, UsesVisualizationMixin):
         # Set up inputs.
         inputs = payload.get('inputs', {})
         # Find files coming in as multipart file data and add to inputs.
-        for k, v in payload.iteritems():
+        for k, v in payload.items():
             if k.startswith('files_') or k.startswith('__files_'):
                 inputs[k] = v
 
         # for inputs that are coming from the Library, copy them into the history
         input_patch = {}
-        for k, v in inputs.iteritems():
+        for k, v in inputs.items():
             if isinstance(v, dict) and v.get('src', '') == 'ldda' and 'id' in v:
                 ldda = trans.sa_session.query(trans.app.model.LibraryDatasetDatasetAssociation).get(self.decode_id(v['id']))
                 if trans.user_is_admin() or trans.app.security_agent.can_access_dataset(trans.get_current_user_roles(), ldda.dataset):
                     input_patch[k] = ldda.to_history_dataset_association(target_history, add_to_history=True)
 
-        for k, v in input_patch.iteritems():
+        for k, v in input_patch.items():
             inputs[k] = v
 
         # TODO: encode data ids and decode ids.
@@ -375,7 +376,7 @@ class ToolsController(BaseAPIController, UsesVisualizationMixin):
             output_dict['output_name'] = output_name
             rval['output_collections'].append(output_dict)
 
-        for output_name, collection_instance in vars.get('implicit_collections', {}).iteritems():
+        for output_name, collection_instance in vars.get('implicit_collections', {}).items():
             history = target_history or trans.history
             output_dict = dictify_dataset_collection_instance(collection_instance, security=trans.security, parent=history)
             output_dict['output_name'] = output_name
@@ -387,7 +388,7 @@ class ToolsController(BaseAPIController, UsesVisualizationMixin):
     # -- Helper methods --
     #
     def _get_tool(self, id, tool_version=None, user=None):
-        id = urllib.unquote_plus(id)
+        id = unquote_plus(id)
         tool = self.app.toolbox.get_tool(id, tool_version)
         if not tool:
             raise exceptions.ObjectNotFound("Could not find tool with id '%s'." % id)
@@ -466,7 +467,7 @@ class ToolsController(BaseAPIController, UsesVisualizationMixin):
         # TODO: need to handle updates to conditional parameters; conditional
         # params are stored in dicts (and dicts within dicts).
         new_inputs = payload['inputs']
-        tool_params.update(dict([(key, dumps(value)) for key, value in new_inputs.items() if key in tool.inputs and new_inputs[key] is not None]))
+        tool_params.update(dict([(key, dumps(value)) for key, value in new_inputs.items() if key in tool.inputs and value is not None]))
         tool_params = tool.params_from_strings(tool_params, self.app)
 
         #
diff --git a/lib/galaxy/webapps/galaxy/api/toolshed.py b/lib/galaxy/webapps/galaxy/api/toolshed.py
index 2ecb92a5a99..b1ced878706 100644
--- a/lib/galaxy/webapps/galaxy/api/toolshed.py
+++ b/lib/galaxy/webapps/galaxy/api/toolshed.py
@@ -243,8 +243,8 @@ class ToolShedController(BaseAPIController):
                 # this is ever not the case, this code will need to be updated.
                 tool_shed_url = common_util.get_tool_shed_url_from_tool_shed_registry(self.app, tool_ids[0].split('/')[0])
             found_repository = json.loads(util.url_get(tool_shed_url, params=dict(tool_ids=','.join(tool_ids)), pathspec=['api', 'repositories']))
-            fr_keys = found_repository.keys()
-            repository_id = found_repository[fr_keys[0]]['repository_id']
+            fr_first_key = next(iter(found_repository.keys()))
+            repository_id = found_repository[fr_first_key]['repository_id']
             repository_data['current_changeset'] = found_repository['current_changeset']
             repository_data['repository'] = json.loads(util.url_get(tool_shed_url, pathspec=['api', 'repositories', repository_id]))
             del found_repository['current_changeset']
diff --git a/lib/galaxy/webapps/galaxy/controllers/admin.py b/lib/galaxy/webapps/galaxy/controllers/admin.py
index cc72def5d57..1de539d9785 100644
--- a/lib/galaxy/webapps/galaxy/controllers/admin.py
+++ b/lib/galaxy/webapps/galaxy/controllers/admin.py
@@ -1368,7 +1368,7 @@ class AdminGalaxy(controller.JSAppLauncher, AdminActions, UsesQuotaMixin, QuotaP
         if users:
             if trans.request.method == 'GET':
                 return {
-                    'message': 'Changes password(s) for: %s.' % ', '.join([user.email for user in users.itervalues()]),
+                    'message': 'Changes password(s) for: %s.' % ', '.join(user.email for user in users.values()),
                     'status' : 'info',
                     'inputs' : [{'name' : 'password', 'label' : 'New password', 'type' : 'password'},
                                 {'name' : 'confirm', 'label' : 'Confirm password', 'type' : 'password'}]
@@ -1380,7 +1380,7 @@ class AdminGalaxy(controller.JSAppLauncher, AdminActions, UsesQuotaMixin, QuotaP
                     return self.message_exception(trans, 'Use a password of at least 6 characters.')
                 elif password != confirm:
                     return self.message_exception(trans, 'Passwords do not match.')
-                for user in users.itervalues():
+                for user in users.values():
                     user.set_password_cleartext(password)
                     trans.sa_session.add(user)
                     trans.sa_session.flush()
diff --git a/lib/galaxy/webapps/galaxy/controllers/async.py b/lib/galaxy/webapps/galaxy/controllers/async.py
index f002e29a553..bc9ff54a222 100644
--- a/lib/galaxy/webapps/galaxy/controllers/async.py
+++ b/lib/galaxy/webapps/galaxy/controllers/async.py
@@ -5,9 +5,9 @@ Upload class
 from __future__ import absolute_import
 
 import logging
-import urllib
 
 import requests
+from six.moves.urllib.parse import urlencode
 
 from galaxy import jobs, web
 from galaxy.util import Params
@@ -75,10 +75,10 @@ class ASync(BaseUIController):
 
                 # Assume there is exactly one output file possible
                 TOOL_OUTPUT_TYPE = None
-                for idx, obj in enumerate(tool.outputs.values()):
+                for key, obj in tool.outputs.items():
                     try:
                         TOOL_OUTPUT_TYPE = obj.format
-                        params[tool.outputs.keys()[idx]] = data.id
+                        params[key] = data.id
                         break
                     except Exception:
                         # exclude outputs different from ToolOutput (e.g. collections) from the previous assumption
@@ -163,7 +163,7 @@ class ASync(BaseUIController):
                     url_join_char = '&'
                 else:
                     url_join_char = '?'
-                url = "%s%s%s" % (url, url_join_char, urllib.urlencode(params.flatten()))
+                url = "%s%s%s" % (url, url_join_char, urlencode(params.flatten()))
                 log.debug("connecting to -> %s" % url)
                 trans.log_event("Async connecting to -> %s" % url)
                 text = requests.get(url).text.strip()
diff --git a/lib/galaxy/webapps/galaxy/controllers/data_manager.py b/lib/galaxy/webapps/galaxy/controllers/data_manager.py
index 9229842d289..95b65e4ce45 100644
--- a/lib/galaxy/webapps/galaxy/controllers/data_manager.py
+++ b/lib/galaxy/webapps/galaxy/controllers/data_manager.py
@@ -65,7 +65,7 @@ class DataManager(BaseUIController):
                 data_manager_json = {}
                 error_messages.append(escape("Unable to obtain data_table info for hda (%s): %s" % (hda.id, e)))
             values = []
-            for key, value in data_manager_json.get('data_tables', {}).iteritems():
+            for key, value in data_manager_json.get('data_tables', {}).items():
                 values.append((key, value))
             data_manager_output.append(values)
         return trans.fill_template("data_manager/view_job.mako", data_manager=data_manager, job=job, view_only=not_is_admin, hdas=hdas, data_manager_output=data_manager_output, message=message, status=status, error_messages=error_messages)
diff --git a/lib/galaxy/webapps/galaxy/controllers/dataset.py b/lib/galaxy/webapps/galaxy/controllers/dataset.py
index e87487a9871..5f8c142eedd 100644
--- a/lib/galaxy/webapps/galaxy/controllers/dataset.py
+++ b/lib/galaxy/webapps/galaxy/controllers/dataset.py
@@ -1,10 +1,13 @@
 import logging
 import os
-import urllib
 
 import paste.httpexceptions
 from markupsafe import escape
 from six import string_types, text_type
+from six.moves.urllib.parse import (
+    quote_plus,
+    unquote_plus
+)
 from sqlalchemy import false, true
 
 from galaxy import (
@@ -276,7 +279,7 @@ class DatasetInterface(BaseUIController, UsesAnnotations, UsesItemRatings, UsesE
                 return self.message_exception(trans, 'Please wait until this dataset finishes uploading before attempting to edit its metadata.')
             # let's not overwrite the imported datatypes module with the variable datatypes?
             # the built-in 'id' is overwritten in lots of places as well
-            ldatatypes = [(dtype_name, dtype_name) for dtype_name, dtype_value in trans.app.datatypes_registry.datatypes_by_extension.iteritems() if dtype_value.allow_datatype_change]
+            ldatatypes = [(dtype_name, dtype_name) for dtype_name, dtype_value in trans.app.datatypes_registry.datatypes_by_extension.items() if dtype_value.allow_datatype_change]
             ldatatypes.sort()
             all_roles = [(r.name, trans.security.encode_id(r.id)) for r in trans.app.security_agent.get_legitimate_roles(trans, data.dataset, 'root')]
             data_metadata = [(name, spec) for name, spec in data.metadata.spec.items()]
@@ -352,11 +355,10 @@ class DatasetInterface(BaseUIController, UsesAnnotations, UsesItemRatings, UsesE
             permission_inputs = list()
             if trans.user:
                 if data.dataset.actions:
-                    permitted_actions = trans.app.model.Dataset.permitted_actions.items()
                     in_roles = {}
                     for action, roles in trans.app.security_agent.get_permissions(data.dataset).items():
                         in_roles[action.action] = [trans.security.encode_id(role.id) for role in roles]
-                    for index, action in permitted_actions:
+                    for index, action in trans.app.model.Dataset.permitted_actions.items():
                         if action == trans.app.security_agent.permitted_actions.DATASET_ACCESS:
                             help_text = action.description + '<br/>NOTE: Users must have every role associated with this dataset in order to access it.'
                         else:
@@ -415,6 +417,7 @@ class DatasetInterface(BaseUIController, UsesAnnotations, UsesItemRatings, UsesE
                 if job_to_dataset_association.job.state not in [job_to_dataset_association.job.states.OK, job_to_dataset_association.job.states.ERROR, job_to_dataset_association.job.states.DELETED]:
                     return False
             return True
+
         message = None
         status = 'success'
         dataset_id = payload.get('dataset_id')
@@ -483,9 +486,8 @@ class DatasetInterface(BaseUIController, UsesAnnotations, UsesItemRatings, UsesE
             if not trans.user:
                 return self.message_exception(trans, 'You must be logged in if you want to change permissions.')
             if trans.app.security_agent.can_manage_dataset(trans.get_current_user_roles(), data.dataset):
-                permitted_actions = trans.app.model.Dataset.permitted_actions.items()
                 payload_permissions = {}
-                for action, key in permitted_actions:
+                for action in trans.app.model.Dataset.permitted_actions.keys():
                     payload_permissions[action] = [trans.security.decode_id(role_id) for role_id in util.listify(payload.get(action))]
                 # The user associated the DATASET_ACCESS permission on the dataset with 1 or more roles.  We
                 # need to ensure that they did not associate roles that would cause accessibility problems.
@@ -730,7 +732,7 @@ class DatasetInterface(BaseUIController, UsesAnnotations, UsesItemRatings, UsesE
         if 'display_url' not in kwd or 'redirect_url' not in kwd:
             return trans.show_error_message('Invalid parameters specified for "display at" link, please contact a Galaxy administrator')
         try:
-            redirect_url = kwd['redirect_url'] % urllib.quote_plus(kwd['display_url'])
+            redirect_url = kwd['redirect_url'] % quote_plus(kwd['display_url'])
         except Exception:
             redirect_url = kwd['redirect_url']  # not all will need custom text
         if trans.app.security_agent.dataset_is_public(data.dataset):
@@ -746,7 +748,7 @@ class DatasetInterface(BaseUIController, UsesAnnotations, UsesItemRatings, UsesE
         """Access to external display applications"""
         # Build list of parameters to pass in to display application logic (app_kwds)
         app_kwds = {}
-        for name, value in dict(kwds).iteritems():  # clone kwds because we remove stuff as we go.
+        for name, value in dict(kwds).items():  # clone kwds because we remove stuff as we go.
             if name.startswith("app_"):
                 app_kwds[name[len("app_"):]] = value
                 del kwds[name]
@@ -763,8 +765,8 @@ class DatasetInterface(BaseUIController, UsesAnnotations, UsesItemRatings, UsesE
         else:
             user_roles = []
         # Decode application name and link name
-        app_name = urllib.unquote_plus(app_name)
-        link_name = urllib.unquote_plus(link_name)
+        app_name = unquote_plus(app_name)
+        link_name = unquote_plus(link_name)
         if None in [app_name, link_name]:
             return trans.show_error_message("A display application name and link name must be provided.")
         if self._can_access_dataset(trans, data, additional_roles=user_roles):
@@ -1143,7 +1145,7 @@ class DatasetInterface(BaseUIController, UsesAnnotations, UsesItemRatings, UsesE
                     target_histories = [history]
                 if len(target_histories) != len(target_history_ids):
                     error_msg = error_msg + "You do not have permission to add datasets to %i requested histories.  " % (len(target_history_ids) - len(target_histories))
-                source_contents = map(trans.sa_session.query(trans.app.model.HistoryDatasetAssociation).get, decoded_dataset_ids)
+                source_contents = list(map(trans.sa_session.query(trans.app.model.HistoryDatasetAssociation).get, decoded_dataset_ids))
                 source_contents.extend(map(trans.sa_session.query(trans.app.model.HistoryDatasetCollectionAssociation).get, decoded_dataset_collection_ids))
                 source_contents.sort(key=lambda content: content.hid)
                 for content in source_contents:
diff --git a/lib/galaxy/webapps/galaxy/controllers/root.py b/lib/galaxy/webapps/galaxy/controllers/root.py
index dcf876cfb9f..67a549722f3 100644
--- a/lib/galaxy/webapps/galaxy/controllers/root.py
+++ b/lib/galaxy/webapps/galaxy/controllers/root.py
@@ -152,7 +152,7 @@ class RootController(controller.JSAppLauncher, UsesAnnotations):
         if len(query) > 2:
             search_results = trans.app.toolbox_search.search(query)
             if 'tags[]' in kwd:
-                results = filter(lambda x: x in results, search_results)
+                results = [x for x in search_results if x in results]
             else:
                 results = search_results
         return results
diff --git a/lib/galaxy/webapps/galaxy/controllers/user.py b/lib/galaxy/webapps/galaxy/controllers/user.py
index a2be9a422b4..316d9ba6964 100644
--- a/lib/galaxy/webapps/galaxy/controllers/user.py
+++ b/lib/galaxy/webapps/galaxy/controllers/user.py
@@ -5,10 +5,10 @@ Contains the user interface in the Universe class
 import logging
 import random
 import socket
-import urllib
 from datetime import datetime, timedelta
 
 from markupsafe import escape
+from six.moves.urllib.parse import unquote
 from sqlalchemy import (
     and_,
     func,
@@ -868,7 +868,7 @@ class User(BaseUIController, UsesFormDefinitionsMixin, CreatesUsersMixin, Create
         Check whether token fits the user and then activate the user's account.
         """
         params = util.Params(kwd, sanitize=False)
-        email = urllib.unquote(params.get('email', None))
+        email = unquote(params.get('email', None))
         activation_token = params.get('activation_token', None)
 
         if email is None or activation_token is None:
diff --git a/lib/galaxy/webapps/galaxy/controllers/workflow.py b/lib/galaxy/webapps/galaxy/controllers/workflow.py
index 0609afd5222..d45a11add7b 100644
--- a/lib/galaxy/webapps/galaxy/controllers/workflow.py
+++ b/lib/galaxy/webapps/galaxy/controllers/workflow.py
@@ -1,7 +1,6 @@
 from __future__ import absolute_import
 
 import base64
-import httplib
 import json
 import logging
 import os
@@ -9,6 +8,7 @@ import sgmllib
 
 import requests
 from markupsafe import escape
+from six.moves.http_client import HTTPConnection
 from sqlalchemy import and_
 from sqlalchemy.orm import joinedload
 from sqlalchemy.sql import expression
@@ -680,7 +680,7 @@ class WorkflowController(BaseUIController, SharableMixin, UsesStoredWorkflowMixi
         auth_header = base64.b64encode('%s:%s' % (myexp_username, myexp_password))
         headers = {"Content-type": "text/xml", "Accept": "text/xml", "Authorization": "Basic %s" % auth_header}
         myexp_url = trans.app.config.get("myexperiment_url", self.__myexp_url)
-        conn = httplib.HTTPConnection(myexp_url)
+        conn = HTTPConnection(myexp_url)
         # NOTE: blocks web thread.
         conn.request("POST", "/workflow.xml", request, headers)
         response = conn.getresponse()
@@ -989,7 +989,7 @@ class WorkflowController(BaseUIController, SharableMixin, UsesStoredWorkflowMixi
                     # Extract just the output flags for this step.
                     p = "%s|otag|" % step.id
                     l = len(p)
-                    outputs = [k[l:] for (k, v) in kwargs.iteritems() if k.startswith(p)]
+                    outputs = [k[l:] for (k, v) in kwargs.items() if k.startswith(p)]
                     if step.workflow_outputs:
                         for existing_output in step.workflow_outputs:
                             if existing_output.output_name not in outputs:
@@ -1060,10 +1060,10 @@ def _expand_multiple_inputs(kwargs):
     input_combos = _extend_with_multiplied_combos(input_combos, multiplied_multi_inputs)
 
     # Input name that are multiply specified
-    multi_input_keys = matched_multi_inputs.keys() + multiplied_multi_inputs.keys()
+    multi_input_keys = list(matched_multi_inputs.keys()) + list(multiplied_multi_inputs.keys())
 
     for input_combo in input_combos:
-        for key, value in input_combo.iteritems():
+        for key, value in input_combo.items():
             kwargs[key] = value
         yield (kwargs, multi_input_keys)
 
@@ -1074,14 +1074,14 @@ def _extend_with_matched_combos(single_inputs, multi_inputs):
 
     matched_multi_inputs = []
 
-    first_multi_input_key = multi_inputs.keys()[0]
+    first_multi_input_key = next(iter(multi_inputs.keys()))
     first_multi_value = multi_inputs.get(first_multi_input_key)
 
     for value in first_multi_value:
         new_inputs = _copy_and_extend_inputs(single_inputs, first_multi_input_key, value)
         matched_multi_inputs.append(new_inputs)
 
-    for multi_input_key, multi_input_values in multi_inputs.iteritems():
+    for multi_input_key, multi_input_values in multi_inputs.items():
         if multi_input_key == first_multi_input_key:
             continue
         if len(multi_input_values) != len(first_multi_value):
@@ -1094,7 +1094,7 @@ def _extend_with_matched_combos(single_inputs, multi_inputs):
 def _extend_with_multiplied_combos(input_combos, multi_inputs):
     combos = input_combos
 
-    for multi_input_key, multi_input_value in multi_inputs.iteritems():
+    for multi_input_key, multi_input_value in multi_inputs.items():
         iter_combos = []
 
         for combo in combos:
@@ -1114,7 +1114,7 @@ def _copy_and_extend_inputs(inputs, key, value):
 def _split_inputs(kwargs):
     """
     """
-    input_keys = filter(lambda a: a.endswith('|input'), kwargs)
+    input_keys = [a for a in kwargs if a.endswith('|input')]
     single_inputs = {}
     matched_multi_inputs = {}
     multiplied_multi_inputs = {}
diff --git a/lib/galaxy/webapps/tool_shed/api/repositories.py b/lib/galaxy/webapps/tool_shed/api/repositories.py
index 916a02795a8..ae47508a7c4 100644
--- a/lib/galaxy/webapps/tool_shed/api/repositories.py
+++ b/lib/galaxy/webapps/tool_shed/api/repositories.py
@@ -1,12 +1,12 @@
 import json
 import logging
 import os
-import StringIO
 import tarfile
 from cgi import FieldStorage
 from collections import namedtuple
 from time import strftime
 
+from six import StringIO
 from sqlalchemy import and_, false
 
 from galaxy import (
@@ -1075,7 +1075,7 @@ class RepositoriesController(BaseAPIController):
         file_data = payload.get('file')
         # Code stolen from gx's upload_common.py
         if isinstance(file_data, FieldStorage):
-            assert not isinstance(file_data.file, StringIO.StringIO)
+            assert not isinstance(file_data.file, StringIO)
             assert file_data.file.name != '<fdopen>'
             local_filename = util.mkstemp_ln(file_data.file.name, 'upload_file_data_')
             file_data.file.close()
diff --git a/lib/galaxy/webapps/tool_shed/controllers/admin.py b/lib/galaxy/webapps/tool_shed/controllers/admin.py
index 96a571e7afd..e57b65c62c6 100644
--- a/lib/galaxy/webapps/tool_shed/controllers/admin.py
+++ b/lib/galaxy/webapps/tool_shed/controllers/admin.py
@@ -46,7 +46,7 @@ class AdminController(BaseUIController, Admin):
                                                                 **kwd))
             elif operation == "repositories_by_user":
                 # Eliminate the current filters if any exist.
-                for k, v in kwd.items():
+                for k, v in list(kwd.items()):
                     if k.startswith('f-'):
                         del kwd[k]
                 if 'user_id' in kwd:
@@ -61,7 +61,7 @@ class AdminController(BaseUIController, Admin):
                     kwd['f-email'] = repository.user.email
             elif operation == "repositories_by_category":
                 # Eliminate the current filters if any exist.
-                for k, v in kwd.items():
+                for k, v in list(kwd.items()):
                     if k.startswith('f-'):
                         del kwd[k]
                 category_id = kwd.get('id', None)
diff --git a/lib/galaxy/webapps/tool_shed/controllers/repository.py b/lib/galaxy/webapps/tool_shed/controllers/repository.py
index 7b5606b90bb..22e69f8d7c7 100644
--- a/lib/galaxy/webapps/tool_shed/controllers/repository.py
+++ b/lib/galaxy/webapps/tool_shed/controllers/repository.py
@@ -120,7 +120,7 @@ class RepositoryController(BaseUIController, ratings_util.ItemRatings):
             operation = kwd['operation'].lower()
             if operation in ["repositories_by_category", "repositories_by_user"]:
                 # Eliminate the current filters if any exist.
-                for k, v in kwd.items():
+                for k, v in list(kwd.items()):
                     if k.startswith('f-'):
                         del kwd[k]
                 return trans.response.send_redirect(web.url_for(controller='repository',
@@ -274,7 +274,7 @@ class RepositoryController(BaseUIController, ratings_util.ItemRatings):
     def browse_repositories_by_user(self, trans, **kwd):
         """Display the list of repositories owned by a specified user."""
         # Eliminate the current search filters if any exist.
-        for k, v in kwd.items():
+        for k, v in list(kwd.items()):
             if k.startswith('f-'):
                 del kwd[k]
         if 'operation' in kwd:
@@ -522,7 +522,7 @@ class RepositoryController(BaseUIController, ratings_util.ItemRatings):
             operation = kwd['operation'].lower()
             if operation in ["valid_repositories_by_category", "valid_repositories_by_user"]:
                 # Eliminate the current filters if any exist.
-                for k, v in kwd.items():
+                for k, v in list(kwd.items()):
                     if k.startswith('f-'):
                         del kwd[k]
                 return trans.response.send_redirect(web.url_for(controller='repository',
@@ -560,7 +560,7 @@ class RepositoryController(BaseUIController, ratings_util.ItemRatings):
                                                                 changeset_revision=latest_installable_changeset_revision))
             elif operation == "valid_repositories_by_category":
                 # Eliminate the current filters if any exist.
-                for k, v in kwd.items():
+                for k, v in list(kwd.items()):
                     if k.startswith('f-'):
                         del kwd[k]
                 category_id = kwd.get('id', None)
diff --git a/lib/galaxy/webapps/tool_shed/security/__init__.py b/lib/galaxy/webapps/tool_shed/security/__init__.py
index f67168e6a64..dfe719dcbbb 100644
--- a/lib/galaxy/webapps/tool_shed/security/__init__.py
+++ b/lib/galaxy/webapps/tool_shed/security/__init__.py
@@ -32,7 +32,7 @@ class RBACAgent:
         When getting permitted actions from an untrusted source like a
         form, ensure that they match our actual permitted actions.
         """
-        return filter(lambda x: x is not None, [self.permitted_actions.get(action_string) for action_string in permitted_action_strings])
+        return [x for x in [self.permitted_actions.get(action_string) for action_string in permitted_action_strings] if x is not None]
 
     def create_private_user_role(self, user):
         raise Exception("Unimplemented Method")
@@ -46,7 +46,7 @@ class RBACAgent:
 
     def get_actions(self):
         """Get all permitted actions as a list of Action objects"""
-        return self.permitted_actions.__dict__.values()
+        return list(self.permitted_actions.__dict__.values())
 
     def get_item_actions(self, action, item):
         raise Exception('No valid method of retrieving action (%s) for item %s.' % (action, item))
diff --git a/lib/galaxy/webapps/tool_shed/util/hgweb_config.py b/lib/galaxy/webapps/tool_shed/util/hgweb_config.py
index b45bf887b20..5a52d423c78 100644
--- a/lib/galaxy/webapps/tool_shed/util/hgweb_config.py
+++ b/lib/galaxy/webapps/tool_shed/util/hgweb_config.py
@@ -1,10 +1,11 @@
-import ConfigParser
 import logging
 import os
 import shutil
 import threading
 from datetime import date
 
+from six.moves import configparser
+
 log = logging.getLogger(__name__)
 
 new_hgweb_config_template = """
@@ -60,12 +61,12 @@ class HgWebConfigManager(object):
         self.read_config()
         try:
             entry = self.in_memory_config.get('paths', lhs)
-        except ConfigParser.NoOptionError:
+        except configparser.NoOptionError:
             try:
                 # We have a multi-threaded front-end, so one of the threads may not have the latest version of the hgweb.config file.
                 self.read_config(force_read=True)
                 entry = self.in_memory_config.get('paths', lhs)
-            except ConfigParser.NoOptionError:
+            except configparser.NoOptionError:
                 raise Exception("Entry for repository %s missing in file %s." % (lhs, self.hgweb_config))
         return entry
 
@@ -92,7 +93,7 @@ class HgWebConfigManager(object):
 
     def read_config(self, force_read=False):
         if force_read or self.in_memory_config is None:
-            config = ConfigParser.ConfigParser()
+            config = configparser.ConfigParser()
             config.read(self.hgweb_config)
             self.in_memory_config = config
 
diff --git a/scripts/build_universe_config.py b/scripts/build_universe_config.py
index da54f11b10d..44c15be7c29 100644
--- a/scripts/build_universe_config.py
+++ b/scripts/build_universe_config.py
@@ -1,9 +1,10 @@
-from ConfigParser import ConfigParser
 from os import listdir
 from os.path import join
 from re import match
 from sys import argv
 
+from six.moves.configparser import ConfigParser
+
 
 def merge():
     """
diff --git a/scripts/data_libraries/build_lucene_index.py b/scripts/data_libraries/build_lucene_index.py
index b3f787e8b02..d3464b8ec1e 100644
--- a/scripts/data_libraries/build_lucene_index.py
+++ b/scripts/data_libraries/build_lucene_index.py
@@ -9,13 +9,13 @@ details.
 Run from the ~/scripts/data_libraries directory:
 %sh build_lucene_index.sh
 """
-import ConfigParser
 import csv
 import os
 import sys
-import urllib
 
 import requests
+from six.moves.configparser import ConfigParser
+from six.moves.urllib.parse import urlencode
 
 sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, os.pardir, 'lib')))
 
@@ -39,7 +39,7 @@ def main(ini_file):
 
 
 def build_index(search_url, dataset_file):
-    url = "%s/index?%s" % (search_url, urllib.urlencode({"docfile": dataset_file}))
+    url = "%s/index?%s" % (search_url, urlencode({"docfile": dataset_file}))
     requests.put(url)
 
 
@@ -89,7 +89,7 @@ def _get_folder_info(folder):
 
 
 def get_sa_session(ini_file):
-    conf_parser = ConfigParser.ConfigParser({'here': os.getcwd()})
+    conf_parser = ConfigParser({'here': os.getcwd()})
     conf_parser.read(ini_file)
     kwds = dict()
     for key, value in conf_parser.items("app:main"):
diff --git a/scripts/galaxy-main b/scripts/galaxy-main
index 9cb5b7da345..34ee54edaef 100755
--- a/scripts/galaxy-main
+++ b/scripts/galaxy-main
@@ -31,10 +31,7 @@ import threading
 from argparse import ArgumentParser
 from logging.config import fileConfig
 
-try:
-    import ConfigParser as configparser
-except ImportError:
-    import configparser
+from six.moves.configparser import ConfigParser
 
 try:
     from daemonize import Daemonize
@@ -219,7 +216,7 @@ class GalaxyConfigBuilder(object):
         if not self.config_file:
             return
         if self.config_is_ini:
-            raw_config = configparser.ConfigParser()
+            raw_config = ConfigParser()
             raw_config.read([self.config_file])
             if raw_config.has_section('loggers'):
                 config_file = os.path.abspath(self.config_file)
diff --git a/scripts/helper.py b/scripts/helper.py
index e05f4e8a457..af7150f7320 100644
--- a/scripts/helper.py
+++ b/scripts/helper.py
@@ -8,9 +8,10 @@ from __future__ import print_function
 
 import os
 import sys
-from ConfigParser import ConfigParser
 from optparse import OptionParser
 
+from six.moves.configparser import ConfigParser
+
 sys.path.insert(1, os.path.join(os.path.dirname(__file__), os.pardir, 'lib'))
 
 from galaxy.model import mapping
diff --git a/scripts/loc_files/create_all_fasta_loc.py b/scripts/loc_files/create_all_fasta_loc.py
index 300813abf3b..3feefd17927 100644
--- a/scripts/loc_files/create_all_fasta_loc.py
+++ b/scripts/loc_files/create_all_fasta_loc.py
@@ -149,18 +149,6 @@ VARIANT_MAP = {'canon': 'Canonical',
                'male': 'Male'}
 
 
-# alphabetize ignoring case
-def caseless_compare(a, b):
-    au = a.upper()
-    bu = b.upper()
-    if au > bu:
-        return 1
-    elif au == bu:
-        return 0
-    elif au < bu:
-        return -1
-
-
 def __main__():
     # command line variables
     parser = optparse.OptionParser()
@@ -257,14 +245,13 @@ def __main__():
                         else:
                             unmatching_fasta_paths.append(os.path.join(dirpath, fn))
         # remove redundant fasta files
-        if variant_exclusions.keys():
-            for k in variant_exclusions.keys():
-                leave_in = '%s%s' % (genome_subdir, k)
-                if leave_in in fasta_locs:
-                    to_remove = ['%s%s' % (genome_subdir, k) for k in variant_exclusions[k]]
-                    for tr in to_remove:
-                        if tr in fasta_locs:
-                            del fasta_locs[tr]
+        for k, v in variant_exclusions.items():
+            leave_in = '%s%s' % (genome_subdir, k)
+            if leave_in in fasta_locs:
+                to_remove = ['%s%s' % (genome_subdir, _) for _ in v]
+                for tr in to_remove:
+                    if tr in fasta_locs:
+                        del fasta_locs[tr]
 
     # output results
     print('\nThere were %s fasta files found that were not included because they did not have the expected file names.' % len(unmatching_fasta_paths))
@@ -286,8 +273,8 @@ def __main__():
         else:
             all_fasta_loc.write('%s\n' % open('%s.sample' % loc_path, 'rb').read().strip())
     # output list of fasta files in alphabetical order
-    fasta_bases = fasta_locs.keys()
-    fasta_bases.sort(caseless_compare)
+    fasta_bases = list(fasta_locs.keys())
+    fasta_bases.sort(key=str.upper)
     for fb in fasta_bases:
         out_line = []
         for col in col_values:
diff --git a/scripts/microbes/create_bacteria_loc_file.py b/scripts/microbes/create_bacteria_loc_file.py
index e3bdffc8408..2a352307997 100644
--- a/scripts/microbes/create_bacteria_loc_file.py
+++ b/scripts/microbes/create_bacteria_loc_file.py
@@ -20,25 +20,25 @@ def __main__():
         this_base_dir, sub_dirs, files = result
         for file in files:
             if file[-5:] == ".info":
-                dict = {}
+                tmp_dict = {}
                 info_file = open(os.path.join(this_base_dir, file), 'r')
                 info = info_file.readlines()
                 info_file.close()
                 for line in info:
                     fields = line.replace("\n", "").split("=")
-                    dict[fields[0]] = "=".join(fields[1:])
-                if 'genome project id' in dict.keys():
-                    name = dict['genome project id']
-                    if 'build' in dict.keys():
-                        name = dict['build']
+                    tmp_dict[fields[0]] = "=".join(fields[1:])
+                if 'genome project id' in tmp_dict.keys():
+                    name = tmp_dict['genome project id']
+                    if 'build' in tmp_dict.keys():
+                        name = tmp_dict['build']
                     if name not in organisms.keys():
                         organisms[name] = {'chrs': {}, 'base_dir': this_base_dir}
-                    for key in dict.keys():
-                        organisms[name][key] = dict[key]
+                    for key in tmp_dict.keys():
+                        organisms[name][key] = tmp_dict[key]
                 else:
-                    if dict['organism'] not in organisms.keys():
-                        organisms[dict['organism']] = {'chrs': {}, 'base_dir': this_base_dir}
-                    organisms[dict['organism']]['chrs'][dict['chromosome']] = dict
+                    if tmp_dict['organism'] not in organisms.keys():
+                        organisms[tmp_dict['organism']] = {'chrs': {}, 'base_dir': this_base_dir}
+                    organisms[tmp_dict['organism']]['chrs'][tmp_dict['chromosome']] = tmp_dict
     for org in organisms:
         org = organisms[org]
         # if no gpi, then must be a ncbi chr which corresponds to a UCSC org, w/o matching UCSC designation
diff --git a/scripts/microbes/create_bacteria_table.py b/scripts/microbes/create_bacteria_table.py
index 232bdfc9deb..20b6891b9b7 100644
--- a/scripts/microbes/create_bacteria_table.py
+++ b/scripts/microbes/create_bacteria_table.py
@@ -20,32 +20,31 @@ def __main__():
         this_base_dir, sub_dirs, files = result
         for file in files:
             if file[-5:] == ".info":
-                dict = {}
+                tmp_dict = {}
                 info_file = open(os.path.join(this_base_dir, file), 'r')
                 info = info_file.readlines()
                 info_file.close()
                 for line in info:
                     fields = line.replace("\n", "").split("=")
-                    dict[fields[0]] = "=".join(fields[1:])
-                if 'genome project id' in dict.keys():
-                    name = dict['genome project id']
-                    if 'build' in dict.keys():
-                        name = dict['build']
+                    tmp_dict[fields[0]] = "=".join(fields[1:])
+                if 'genome project id' in tmp_dict.keys():
+                    name = tmp_dict['genome project id']
+                    if 'build' in tmp_dict.keys():
+                        name = tmp_dict['build']
                     if name not in organisms.keys():
                         organisms[name] = {'chrs': {}, 'base_dir': this_base_dir}
-                    for key in dict.keys():
-                        organisms[name][key] = dict[key]
+                    for key in tmp_dict.keys():
+                        organisms[name][key] = tmp_dict[key]
                 else:
-                    if dict['organism'] not in organisms.keys():
-                        organisms[dict['organism']] = {'chrs': {}, 'base_dir': this_base_dir}
-                    organisms[dict['organism']]['chrs'][dict['chromosome']] = dict
+                    if tmp_dict['organism'] not in organisms.keys():
+                        organisms[tmp_dict['organism']] = {'chrs': {}, 'base_dir': this_base_dir}
+                    organisms[tmp_dict['organism']]['chrs'][tmp_dict['chromosome']] = tmp_dict
 
-    orgs = organisms.keys()
-    for org in orgs:
-        if 'name' not in organisms[org]:
-            del organisms[org]
+    for org_name, org in list(organisms.items()):
+        if 'name' not in org:
+            del organisms[org_name]
 
-    orgs = organisms.keys()
+    orgs = list(organisms.keys())
     # need to sort by name
     swap_test = False
     for i in range(0, len(orgs) - 1):
@@ -58,8 +57,7 @@ def __main__():
 
     print("||'''Organism'''||'''Kingdom'''||'''Group'''||'''Links to UCSC Archaea Browser'''||")
 
-    for org in orgs:
-        org = organisms[org]
+    for org in organisms.values():
         at_ucsc = False
         # if no gpi, then must be a ncbi chr which corresponds to a UCSC org, w/o matching UCSC designation
         try:
diff --git a/scripts/microbes/create_nib_seq_loc_file.py b/scripts/microbes/create_nib_seq_loc_file.py
index a06446dd81d..bbb7a0e50c3 100644
--- a/scripts/microbes/create_nib_seq_loc_file.py
+++ b/scripts/microbes/create_nib_seq_loc_file.py
@@ -29,25 +29,25 @@ def __main__():
         this_base_dir, sub_dirs, files = result
         for file in files:
             if file[-5:] == ".info":
-                dict = {}
+                tmp_dict = {}
                 info_file = open(os.path.join(this_base_dir, file), 'r')
                 info = info_file.readlines()
                 info_file.close()
                 for line in info:
                     fields = line.replace("\n", "").split("=")
-                    dict[fields[0]] = "=".join(fields[1:])
-                if 'genome project id' in dict.keys():
-                    name = dict['genome project id']
-                    if 'build' in dict.keys():
-                        name = dict['build']
+                    tmp_dict[fields[0]] = "=".join(fields[1:])
+                if 'genome project id' in tmp_dict.keys():
+                    name = tmp_dict['genome project id']
+                    if 'build' in tmp_dict.keys():
+                        name = tmp_dict['build']
                     if name not in organisms.keys():
                         organisms[name] = {'chrs': {}, 'base_dir': this_base_dir}
-                    for key in dict.keys():
-                        organisms[name][key] = dict[key]
+                    for key in tmp_dict.keys():
+                        organisms[name][key] = tmp_dict[key]
                 else:
-                    if dict['organism'] not in organisms.keys():
-                        organisms[dict['organism']] = {'chrs': {}, 'base_dir': this_base_dir}
-                    organisms[dict['organism']]['chrs'][dict['chromosome']] = dict
+                    if tmp_dict['organism'] not in organisms.keys():
+                        organisms[tmp_dict['organism']] = {'chrs': {}, 'base_dir': this_base_dir}
+                    organisms[tmp_dict['organism']]['chrs'][tmp_dict['chromosome']] = tmp_dict
 
     for org in organisms:
         org = organisms[org]
diff --git a/scripts/microbes/get_builds_lengths.py b/scripts/microbes/get_builds_lengths.py
index ee96cfebc3d..3f7fc93161a 100644
--- a/scripts/microbes/get_builds_lengths.py
+++ b/scripts/microbes/get_builds_lengths.py
@@ -20,25 +20,25 @@ def __main__():
         this_base_dir, sub_dirs, files = result
         for file in files:
             if file[-5:] == ".info":
-                dict = {}
+                tmp_dict = {}
                 info_file = open(os.path.join(this_base_dir, file), 'r')
                 info = info_file.readlines()
                 info_file.close()
                 for line in info:
                     fields = line.replace("\n", "").split("=")
-                    dict[fields[0]] = "=".join(fields[1:])
-                if 'genome project id' in dict.keys():
-                    name = dict['genome project id']
-                    if 'build' in dict.keys():
-                        name = dict['build']
+                    tmp_dict[fields[0]] = "=".join(fields[1:])
+                if 'genome project id' in tmp_dict.keys():
+                    name = tmp_dict['genome project id']
+                    if 'build' in tmp_dict.keys():
+                        name = tmp_dict['build']
                     if name not in organisms.keys():
                         organisms[name] = {'chrs': {}, 'base_dir': this_base_dir}
-                    for key in dict.keys():
-                        organisms[name][key] = dict[key]
+                    for key in tmp_dict.keys():
+                        organisms[name][key] = tmp_dict[key]
                 else:
-                    if dict['organism'] not in organisms.keys():
-                        organisms[dict['organism']] = {'chrs': {}, 'base_dir': this_base_dir}
-                    organisms[dict['organism']]['chrs'][dict['chromosome']] = dict
+                    if tmp_dict['organism'] not in organisms.keys():
+                        organisms[tmp_dict['organism']] = {'chrs': {}, 'base_dir': this_base_dir}
+                    organisms[tmp_dict['organism']]['chrs'][tmp_dict['chromosome']] = tmp_dict
     for org in organisms:
         org = organisms[org]
         # if no gpi, then must be a ncbi chr which corresponds to a UCSC org, w/o matching UCSC designation
diff --git a/scripts/microbes/harvest_bacteria.py b/scripts/microbes/harvest_bacteria.py
index 34418adcdf0..0eca08792bd 100644
--- a/scripts/microbes/harvest_bacteria.py
+++ b/scripts/microbes/harvest_bacteria.py
@@ -12,10 +12,10 @@ import time
 from ftplib import FTP
 
 import requests
-from BeautifulSoup import BeautifulSoup
 from six.moves.urllib.request import urlretrieve
 
-from util import (  # noqa: I202
+from BeautifulSoup import BeautifulSoup  # noqa: I100, I202
+from util import (
     get_bed_from_genbank,
     get_bed_from_GeneMark,
     get_bed_from_GeneMarkHMM,
diff --git a/scripts/microbes/ncbi_to_ucsc.py b/scripts/microbes/ncbi_to_ucsc.py
index 522216df178..d4b81500f54 100644
--- a/scripts/microbes/ncbi_to_ucsc.py
+++ b/scripts/microbes/ncbi_to_ucsc.py
@@ -7,10 +7,11 @@ from __future__ import print_function
 
 import os
 import sys
-import urllib
 from shutil import move
 from xml.etree import ElementTree
 
+from six.moves.urllib.request import urlopen
+
 
 def __main__():
     base_dir = os.path.join(os.getcwd(), "bacteria")
@@ -24,29 +25,29 @@ def __main__():
         this_base_dir, sub_dirs, files = result
         for file in files:
             if file[-5:] == ".info":
-                dict = {}
+                tmp_dict = {}
                 info_file = open(os.path.join(this_base_dir, file), 'r')
                 info = info_file.readlines()
                 info_file.close()
                 for line in info:
                     fields = line.replace("\n", "").split("=")
-                    dict[fields[0]] = "=".join(fields[1:])
-                if 'genome project id' in dict.keys():
-                    if dict['genome project id'] not in organisms.keys():
-                        organisms[dict['genome project id']] = {'chrs': {}, 'base_dir': this_base_dir}
-                    for key in dict.keys():
-                        organisms[dict['genome project id']][key] = dict[key]
+                    tmp_dict[fields[0]] = "=".join(fields[1:])
+                if 'genome project id' in tmp_dict.keys():
+                    if tmp_dict['genome project id'] not in organisms.keys():
+                        organisms[tmp_dict['genome project id']] = {'chrs': {}, 'base_dir': this_base_dir}
+                    for key in tmp_dict.keys():
+                        organisms[tmp_dict['genome project id']][key] = tmp_dict[key]
                 else:
-                    if dict['organism'] not in organisms.keys():
-                        organisms[dict['organism']] = {'chrs': {}, 'base_dir': this_base_dir}
-                    organisms[dict['organism']]['chrs'][dict['chromosome']] = dict
+                    if tmp_dict['organism'] not in organisms.keys():
+                        organisms[tmp_dict['organism']] = {'chrs': {}, 'base_dir': this_base_dir}
+                    organisms[tmp_dict['organism']]['chrs'][tmp_dict['chromosome']] = tmp_dict
 
     # get UCSC data
 
     URL = "http://archaea.ucsc.edu/cgi-bin/das/dsn"
 
     try:
-        page = urllib.urlopen(URL)
+        page = urlopen(URL)
     except Exception:
         print("#Unable to open " + URL)
         print("?\tunspecified (?)")
@@ -65,7 +66,7 @@ def __main__():
     for dsn in tree:
         build = dsn.find("SOURCE").attrib['id']
         try:
-            org_page = urllib.urlopen("http://archaea.ucsc.edu/cgi-bin/hgGateway?db=" + build).read().replace("\n", "").split("<table border=2 cellspacing=2 cellpadding=2>")[1].split("</table>")[0].split("</tr>")
+            org_page = urlopen("http://archaea.ucsc.edu/cgi-bin/hgGateway?db=" + build).read().replace("\n", "").split("<table border=2 cellspacing=2 cellpadding=2>")[1].split("</table>")[0].split("</tr>")
         except Exception:
             print("NO CHROMS FOR", build)
             continue
diff --git a/scripts/microbes/util.py b/scripts/microbes/util.py
index 91232098cd3..55021f43480 100644
--- a/scripts/microbes/util.py
+++ b/scripts/microbes/util.py
@@ -137,7 +137,7 @@ def get_bed_from_GeneMark(geneMark_filename, chr):
     for block in orfs.split("\n\n"):
         if block.startswith("List of Regions of interest"):
             break
-        best_block = {'start': 0, 'end': 0, 'strand': '+', 'avg_prob': -sys.maxint, 'start_prob': -sys.maxint, 'name': 'DNE'}
+        best_block = {'start': 0, 'end': 0, 'strand': '+', 'avg_prob': -sys.maxsize, 'start_prob': -sys.maxsize, 'name': 'DNE'}
         ctr += 1
         ctr2 = 0
         for line in block.split("\n"):
@@ -158,9 +158,8 @@ def get_bed_from_GeneMark(geneMark_filename, chr):
             except Exception:
                 start_prob = 0
             name = "orf_" + str(ctr) + "_" + str(ctr2)
-            if avg_prob >= best_block['avg_prob']:
-                if start_prob > best_block['start_prob']:
-                    best_block = {'start': start, 'end': end, 'strand': strand, 'avg_prob': avg_prob, 'start_prob': start_prob, 'name': name}
+            if avg_prob >= best_block['avg_prob'] and start_prob > best_block['start_prob']:
+                best_block = {'start': start, 'end': end, 'strand': strand, 'avg_prob': avg_prob, 'start_prob': start_prob, 'name': name}
         regions.append(chr + "\t" + str(best_block['start']) + "\t" + str(best_block['end']) + "\t" + best_block['name'] + "\t" + str(int(best_block['avg_prob'] * 1000)) + "\t" + best_block['strand'])
     return regions
 
@@ -198,8 +197,8 @@ def get_bed_from_GeneMarkHMM(geneMarkHMM_filename, chr):
 # converts glimmer3 to bed, doing some linear scaling (probably not correct?) on scores
 # returns an array of bed regions
 def get_bed_from_glimmer3(glimmer3_filename, chr):
-    max_score = -sys.maxint
-    min_score = sys.maxint
+    max_score = -sys.maxsize
+    min_score = sys.maxsize
     orfs = []
     for line in open(glimmer3_filename).readlines():
         if line.startswith(">"):
diff --git a/scripts/others/incorrect_gops_jobs.py b/scripts/others/incorrect_gops_jobs.py
index ba97281899b..e70f2a988c5 100755
--- a/scripts/others/incorrect_gops_jobs.py
+++ b/scripts/others/incorrect_gops_jobs.py
@@ -5,12 +5,12 @@ wherein the second dataset doesn't have chr, start and end in standard columns 1
 """
 from __future__ import print_function
 
-import ConfigParser
 import os
 import sys
 import tempfile
 
 import sqlalchemy as sa
+from six.moves.configparser import ConfigParser
 
 import galaxy.app
 import galaxy.model.mapping
@@ -34,7 +34,7 @@ class TestApplication(object):
 
 def main():
     ini_file = sys.argv[1]
-    conf_parser = ConfigParser.ConfigParser({'here': os.getcwd()})
+    conf_parser = ConfigParser({'here': os.getcwd()})
     conf_parser.read(ini_file)
     configuration = {}
     for key, value in conf_parser.items("app:main"):
diff --git a/scripts/others/incorrect_gops_join_jobs.py b/scripts/others/incorrect_gops_join_jobs.py
index ab0a2473dd1..a0b9778d0f7 100644
--- a/scripts/others/incorrect_gops_join_jobs.py
+++ b/scripts/others/incorrect_gops_join_jobs.py
@@ -4,12 +4,12 @@ Fetch gops_join wherein the use specified minimum coverage is not 1.
 """
 from __future__ import print_function
 
-import ConfigParser
 import os
 import sys
 import tempfile
 
 import sqlalchemy as sa
+from six.moves.configparser import ConfigParser
 
 import galaxy.app
 import galaxy.model.mapping
@@ -33,7 +33,7 @@ class TestApplication(object):
 
 def main():
     ini_file = sys.argv[1]
-    conf_parser = ConfigParser.ConfigParser({'here': os.getcwd()})
+    conf_parser = ConfigParser({'here': os.getcwd()})
     conf_parser.read(ini_file)
     configuration = {}
     for key, value in conf_parser.items("app:main"):
diff --git a/scripts/paster.py b/scripts/paster.py
index 0f99c9186c9..bcd2080724c 100755
--- a/scripts/paster.py
+++ b/scripts/paster.py
@@ -4,14 +4,15 @@ Bootstrap the Galaxy framework.
 This should not be called directly!  Use the run.sh script in Galaxy's
 top level directly.
 """
+from __future__ import absolute_import
+
 import os
 import sys
 
 sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, 'lib')))
 
 from galaxy.util.pastescript import serve
-
-from check_python import check_python  # noqa: I100
+from check_python import check_python  # noqa: I100, I201
 
 # ensure supported version
 try:
diff --git a/scripts/set_dataset_sizes.py b/scripts/set_dataset_sizes.py
index 7c5b36e0c86..0209ace6546 100644
--- a/scripts/set_dataset_sizes.py
+++ b/scripts/set_dataset_sizes.py
@@ -3,9 +3,9 @@ from __future__ import print_function
 
 import os
 import sys
-from ConfigParser import ConfigParser
 from optparse import OptionParser
 
+from six.moves.configparser import ConfigParser
 
 sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, 'lib')))
 
diff --git a/scripts/set_user_disk_usage.py b/scripts/set_user_disk_usage.py
index ff48168ab89..426e813259e 100755
--- a/scripts/set_user_disk_usage.py
+++ b/scripts/set_user_disk_usage.py
@@ -3,9 +3,10 @@ from __future__ import print_function
 
 import os
 import sys
-from ConfigParser import ConfigParser
 from optparse import OptionParser
 
+from six.moves.configparser import ConfigParser
+
 sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, 'lib')))
 
 import galaxy.config
diff --git a/scripts/sync_reports_config.py b/scripts/sync_reports_config.py
index f1d2c190316..e330ca5d243 100644
--- a/scripts/sync_reports_config.py
+++ b/scripts/sync_reports_config.py
@@ -1,6 +1,7 @@
-from ConfigParser import ConfigParser
 from sys import argv
 
+from six.moves.configparser import ConfigParser
+
 REPLACE_PROPERTIES = ["file_path", "database_connection", "new_file_path"]
 MAIN_SECTION = "app:main"
 
diff --git a/scripts/tool_shed/api/get_filtered_repository_revisions.py b/scripts/tool_shed/api/get_filtered_repository_revisions.py
index 91a527d4713..1c5a091eba8 100644
--- a/scripts/tool_shed/api/get_filtered_repository_revisions.py
+++ b/scripts/tool_shed/api/get_filtered_repository_revisions.py
@@ -74,9 +74,9 @@ def main(options):
                     if latest_revision_only:
                         latest_revision = repository_dict.get('latest_revision', hg_util.INITIAL_CHANGELOG_HASH)
                         if changeset_revision == latest_revision:
-                            repository_dicts.append(dict(repository_dict.items() + baseline_repository_dict.items()))
+                            repository_dicts.append(dict(list(repository_dict.items()) + list(baseline_repository_dict.items())))
                     else:
-                        repository_dicts.append(dict(repository_dict.items() + baseline_repository_dict.items()))
+                        repository_dicts.append(dict(list(repository_dict.items()) + list(baseline_repository_dict.items())))
         print('\n\n', repository_dicts)
         print('\nThe url:\n\n', api_url, '\n\nreturned ', len(repository_dicts), ' repository dictionaries...')
 
diff --git a/scripts/tool_shed/bootstrap_tool_shed/bootstrap_util.py b/scripts/tool_shed/bootstrap_tool_shed/bootstrap_util.py
index dacf5acb3d3..69355a892cc 100755
--- a/scripts/tool_shed/bootstrap_tool_shed/bootstrap_util.py
+++ b/scripts/tool_shed/bootstrap_tool_shed/bootstrap_util.py
@@ -1,15 +1,15 @@
 #!/usr/bin/python
 from __future__ import print_function
 
-import ConfigParser
 import optparse
 import os
 import sys
 
-sys.path.insert(1, os.path.join(os.path.dirname(__file__), os.pardir, os.pardir, os.pardir, 'lib'))
-
+from six.moves.configparser import ConfigParser
 from sqlalchemy.exc import OperationalError, ProgrammingError
 
+sys.path.insert(1, os.path.join(os.path.dirname(__file__), os.pardir, os.pardir, os.pardir, 'lib'))
+
 import galaxy.webapps.tool_shed.model.mapping as tool_shed_model
 from tool_shed.util import xml_util
 
@@ -50,7 +50,7 @@ def check_db(config_parser):
         pass
 
     if config_parser.has_option('app:main', 'hgweb_config_dir'):
-        hgweb_config_parser = ConfigParser.ConfigParser()
+        hgweb_config_parser = ConfigParser()
         hgweb_dir = config_parser.get('app:main', 'hgweb_config_dir')
         hgweb_config_file = os.path.join(hgweb_dir, 'hgweb.config')
         if not os.path.exists(hgweb_config_file):
@@ -104,7 +104,7 @@ def get_local_tool_shed_url(config_parser):
 
 
 def main(args):
-    config_parser = ConfigParser.ConfigParser()
+    config_parser = ConfigParser()
 
     if os.path.exists(args.config):
         config_parser.read(args.config)
diff --git a/scripts/tool_shed/bootstrap_tool_shed/create_user_with_api_key.py b/scripts/tool_shed/bootstrap_tool_shed/create_user_with_api_key.py
index 683690f3c2b..bfe3bac8d09 100644
--- a/scripts/tool_shed/bootstrap_tool_shed/create_user_with_api_key.py
+++ b/scripts/tool_shed/bootstrap_tool_shed/create_user_with_api_key.py
@@ -1,21 +1,21 @@
 #!/usr/bin/env python
 from __future__ import print_function
 
-import ConfigParser
 import logging
 import optparse
 import os
 import re
 import sys
 
+from six.moves.configparser import ConfigParser
+
 sys.path.insert(1, os.path.join(os.path.dirname(__file__), os.pardir, os.pardir, os.pardir, 'lib'))
 sys.path.insert(1, os.path.join(os.path.dirname(__file__)))
 
 import galaxy.webapps.tool_shed.config as tool_shed_config
 from galaxy.web import security
 from galaxy.webapps.tool_shed.model import mapping
-
-from bootstrap_util import admin_user_info  # noqa: I100
+from bootstrap_util import admin_user_info  # noqa: I100,I201
 
 log = logging.getLogger(__name__)
 
@@ -124,7 +124,7 @@ if __name__ == "__main__":
     parser.add_option('-c', dest='config', action='store', help='.ini file to retried toolshed configuration from')
     (args, options) = parser.parse_args()
     ini_file = args.config
-    config_parser = ConfigParser.ConfigParser({'here': os.getcwd()})
+    config_parser = ConfigParser({'here': os.getcwd()})
     print("Reading ini file: ", ini_file)
     config_parser.read(ini_file)
     config_dict = {}
diff --git a/scripts/tool_shed/check_download_urls.py b/scripts/tool_shed/check_download_urls.py
index 85cf73d0ac4..9664f0b8c8c 100644
--- a/scripts/tool_shed/check_download_urls.py
+++ b/scripts/tool_shed/check_download_urls.py
@@ -5,10 +5,14 @@
 from __future__ import print_function
 
 import os
-import urllib2
 import xml.etree.ElementTree as ET
 from optparse import OptionParser
 
+from six.moves.urllib.request import (
+    Request,
+    urlopen
+)
+
 FILENAMES = ['tool_dependencies.xml']
 ACTION_TYPES = ['download_by_url', 'download_file']
 
@@ -30,7 +34,7 @@ def main():
                         for element in root.findall(".//action[@type='%s']" % action_type):
                             url = element.text.strip()
                             try:
-                                urllib2.urlopen(urllib2.Request(url))
+                                urlopen(Request(url))
                             except Exception as e:
                                 print("Bad URL '%s' in file '%s': %s" % (url, path, e))
                 except Exception as e:
diff --git a/scripts/tool_shed/migrate_tools_to_repositories.py b/scripts/tool_shed/migrate_tools_to_repositories.py
index e585fb309b4..2d048ad9573 100644
--- a/scripts/tool_shed/migrate_tools_to_repositories.py
+++ b/scripts/tool_shed/migrate_tools_to_repositories.py
@@ -20,7 +20,6 @@ To run this script, use "sh migrate_tools_to_repositories.sh" from this director
 '''
 from __future__ import print_function
 
-import ConfigParser
 import os
 import shutil
 import sys
@@ -29,6 +28,7 @@ import tempfile
 from time import strftime
 
 from mercurial import hg, ui
+from six.moves import configparser
 
 sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, os.pardir, 'lib')))
 
@@ -276,11 +276,11 @@ def main():
     print("%s - Migrating current tool archives to new tool repositories" % now)
     # tool_shed_wsgi.ini file
     ini_file = sys.argv[1]
-    conf_parser = ConfigParser.ConfigParser({'here': os.getcwd()})
+    conf_parser = configparser.ConfigParser({'here': os.getcwd()})
     conf_parser.read(ini_file)
     try:
         db_conn_str = conf_parser.get("app:main", "database_connection")
-    except ConfigParser.NoOptionError:
+    except configparser.NoOptionError:
         db_conn_str = conf_parser.get("app:main", "database_file")
     print('DB Connection: ', db_conn_str)
     # Instantiate app
diff --git a/scripts/transfer.py b/scripts/transfer.py
index 3938ca48846..8d950c2d265 100644
--- a/scripts/transfer.py
+++ b/scripts/transfer.py
@@ -4,18 +4,15 @@ Downloads files to temp locations.  This script is invoked by the Transfer
 Manager (galaxy.jobs.transfer_manager) and should not normally be invoked by
 hand.
 """
-import ConfigParser
 import json
 import logging
 import optparse
 import os
 import random
-import SocketServer
 import sys
 import tempfile
 import threading
 import time
-import urllib2
 
 try:
     import pexpect
@@ -23,6 +20,12 @@ except ImportError:
     pexpect = None
 
 from daemon import DaemonContext
+from six.moves import (
+    configparser,
+    socketserver
+)
+from six.moves.urllib.error import URLError
+from six.moves.urllib.request import urlopen
 from sqlalchemy import create_engine, MetaData, Table
 from sqlalchemy.orm import scoped_session, sessionmaker
 
@@ -82,7 +85,7 @@ class GalaxyApp(object):
     model/database.
     """
     def __init__(self, config_file):
-        self.config = ConfigParser.ConfigParser(dict(database_file='database/universe.sqlite',
+        self.config = configparser.ConfigParser(dict(database_file='database/universe.sqlite',
                                                      file_path='database/files',
                                                      transfer_worker_port_range='12275-12675',
                                                      transfer_worker_log=None))
@@ -95,7 +98,7 @@ class GalaxyApp(object):
         default_dburl = 'sqlite:///%s?isolation_level=IMMEDIATE' % self.config.get('app:main', 'database_file')
         try:
             dburl = self.config.get('app:main', 'database_connection')
-        except ConfigParser.NoOptionError:
+        except configparser.NoOptionError:
             dburl = default_dburl
         engine = create_engine(dburl)
         metadata = MetaData(engine)
@@ -107,7 +110,7 @@ class GalaxyApp(object):
         return self.sa_session.query(self.model.TransferJob).get(int(id))
 
 
-class ListenerServer(SocketServer.ThreadingTCPServer):
+class ListenerServer(socketserver.ThreadingTCPServer):
     """
     The listener will accept state requests and new transfers for as long as
     the manager is running.
@@ -118,7 +121,7 @@ class ListenerServer(SocketServer.ThreadingTCPServer):
         while True:
             random_port = random.choice(port_range)
             try:
-                SocketServer.ThreadingTCPServer.__init__(self, ('localhost', random_port), RequestHandlerClass)
+                super(ListenerServer, self).__init__(('localhost', random_port), RequestHandlerClass)
                 log.info('Listening on port %s' % random_port)
                 break
             except Exception as e:
@@ -128,7 +131,7 @@ class ListenerServer(SocketServer.ThreadingTCPServer):
         app.sa_session.flush()
 
 
-class ListenerRequestHandler(SocketServer.BaseRequestHandler):
+class ListenerRequestHandler(socketserver.BaseRequestHandler):
     """
     Handle state or transfer requests received on the socket.
     """
@@ -217,8 +220,8 @@ def http_transfer(transfer_job):
     url = transfer_job.params['url']
     assert url.startswith('http://') or url.startswith('https://')
     try:
-        f = urllib2.urlopen(url)
-    except urllib2.URLError as e:
+        f = urlopen(url)
+    except URLError as e:
         yield dict(state=transfer_job.states.ERROR, info='Unable to open URL: %s' % str(e))
         return
     size = f.info().getheader('Content-Length')
diff --git a/scripts/update_shed_config_path.py b/scripts/update_shed_config_path.py
index 673847bf6d2..9ecd59fba5c 100644
--- a/scripts/update_shed_config_path.py
+++ b/scripts/update_shed_config_path.py
@@ -1,10 +1,10 @@
 from __future__ import print_function
 
 import argparse
-import ConfigParser
 import os
 import sys
 
+from six.moves.configparser import SafeConfigParser
 from sqlalchemy import create_engine, MetaData
 from sqlalchemy.orm import scoped_session, sessionmaker
 
@@ -27,7 +27,7 @@ def main(opts, session, model):
 
 
 def create_database(config_file):
-    parser = ConfigParser.SafeConfigParser()
+    parser = SafeConfigParser()
     parser.read(config_file)
     # Determine which database connection to use.
     database_connection = parser.get('app:main', 'install_database_connection')
diff --git a/tools/genomespace/genomespace_importer.py b/tools/genomespace/genomespace_importer.py
index 6e73f7c1eeb..3c27517ba7e 100644
--- a/tools/genomespace/genomespace_importer.py
+++ b/tools/genomespace/genomespace_importer.py
@@ -54,7 +54,7 @@ def _prepare_json_param_dict(param_dict):
     JSON serialization Support functions for exec_before_job hook
     """
     rval = {}
-    for key, value in param_dict.iteritems():
+    for key, value in param_dict.items():
         if isinstance(value, dict):
             rval[key] = _prepare_json_param_dict(value)
         elif isinstance(value, list):
@@ -83,7 +83,7 @@ def exec_before_job(app, inp_data, out_data, param_dict=None, tool=None):
                                      GALAXY_ROOT_DIR=param_dict.get('GALAXY_ROOT_DIR'),
                                      TOOL_PROVIDED_JOB_METADATA_FILE=galaxy.jobs.TOOL_PROVIDED_JOB_METADATA_FILE)
     json_filename = None
-    for i, (out_name, data) in enumerate(out_data.iteritems()):
+    for i, (out_name, data) in enumerate(out_data.items()):
         file_name = data.get_file_name()
         data_dict = dict(out_data_name=out_name,
                          ext=data.ext,

From 820d1e259c625f2472f79ee46654bbf91b19dea4 Mon Sep 17 00:00:00 2001
From: Nicola Soranzo <nicola.soranzo@earlham.ac.uk>
Date: Thu, 14 Dec 2017 12:06:29 +0000
Subject: [PATCH 14/15] Mercurial does not support Python3 yet

---
 lib/galaxy/dependencies/pinned-hashed-requirements.txt | 2 +-
 lib/galaxy/dependencies/pinned-requirements.txt        | 2 +-
 lib/galaxy/dependencies/requirements.txt               | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/lib/galaxy/dependencies/pinned-hashed-requirements.txt b/lib/galaxy/dependencies/pinned-hashed-requirements.txt
index 38f136bad1e..4ed98468988 100644
--- a/lib/galaxy/dependencies/pinned-hashed-requirements.txt
+++ b/lib/galaxy/dependencies/pinned-hashed-requirements.txt
@@ -35,7 +35,7 @@ SQLAlchemy==1.0.15 --hash:sha256=7cbac295f87d2af82aac08346b52f72d0b0c00712290495
                    --hash:sha256=f819742f33ae543ca2c48bc43e35bd75372f7c3e379e4881f9040549d3df94b6 \
                    --hash:sha256=fce29753f720f8a6920185bd5a4d1670fa6b6936819475197b2bce7644243766 \
                    --hash:sha256=aa8843df6869f6c999400ae32de5480fba1b7711fe535c168a14225ffd1d3de4
-mercurial==3.7.3 --hash:sha256=49f596820f005ac6f94266b89a0dbd815c0ee0aacd3aa86545dc39fb349ea4bf \
+mercurial==3.7.3; python_version < '3.0' --hash:sha256=49f596820f005ac6f94266b89a0dbd815c0ee0aacd3aa86545dc39fb349ea4bf \
                  --hash:sha256=75f5b6b708bec2d6e0e68ec8912725a5dcac42df00b122fa73a8c4bd21495039 \
                  --hash:sha256=8c07cb3404d26641d8829099bd1047582b76def49eca067ba6bea9a73d261775 \
                  --hash:sha256=6a05bf22101b79b5f56421f7a1c6d301000f759f0114827f37cc9f847c1ab352 \
diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt
index 428728e5899..adddb8247b9 100644
--- a/lib/galaxy/dependencies/pinned-requirements.txt
+++ b/lib/galaxy/dependencies/pinned-requirements.txt
@@ -7,7 +7,7 @@ MarkupSafe==1.0
 PyYAML==3.12
 SQLAlchemy==1.0.15
 sqlalchemy-utils==0.32.19
-mercurial==3.7.3
+mercurial==3.7.3; python_version < '3.0'
 pycrypto==2.6.1
 uWSGI==2.0.15
 # Flexible BAM index naming is new to core pysam
diff --git a/lib/galaxy/dependencies/requirements.txt b/lib/galaxy/dependencies/requirements.txt
index 6dafe091a65..f22fb4e8193 100644
--- a/lib/galaxy/dependencies/requirements.txt
+++ b/lib/galaxy/dependencies/requirements.txt
@@ -5,7 +5,7 @@ bx-python
 MarkupSafe
 PyYAML
 SQLAlchemy
-mercurial
+mercurial; python_version < '3.0'
 pycrypto
 # Flexible BAM index naming is new to main pysam
 pysam>=0.13

From 6fd6595238b5189e89f54ad01079b4d34fbcfea7 Mon Sep 17 00:00:00 2001
From: John Chilton <jmchilton@gmail.com>
Date: Thu, 14 Dec 2017 08:21:46 -0500
Subject: [PATCH 15/15] Another try to fix flakey tool form Selenium test.

---
 test/galaxy_selenium/navigates_galaxy.py | 3 ---
 test/selenium_tests/test_tool_form.py    | 6 +++++-
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/test/galaxy_selenium/navigates_galaxy.py b/test/galaxy_selenium/navigates_galaxy.py
index 30a37e384b3..1d20c179d9a 100644
--- a/test/galaxy_selenium/navigates_galaxy.py
+++ b/test/galaxy_selenium/navigates_galaxy.py
@@ -471,9 +471,6 @@ class NavigatesGalaxy(HasDriver):
 
         self.upload_queue_local_file(test_path)
 
-        # Having some problems with extension not being set properly.
-        self.sleep_for(WAIT_TYPES.UX_RENDER)
-
         if ext is not None:
             self.wait_for_selector_visible('.upload-extension')
             self.select2_set_value(".upload-extension", ext)
diff --git a/test/selenium_tests/test_tool_form.py b/test/selenium_tests/test_tool_form.py
index e46aa582809..d880f682beb 100644
--- a/test/selenium_tests/test_tool_form.py
+++ b/test/selenium_tests/test_tool_form.py
@@ -1,3 +1,4 @@
+from base.populators import flakey
 from galaxy_selenium.navigates_galaxy import retry_call_during_transitions
 
 from .framework import (
@@ -84,13 +85,16 @@ class ToolFormTestCase(SeleniumTestCase, UsesHistoryItemAssertions):
         self.history_panel_wait_for_hid_ok(2)
         self._check_dataset_details_for_inttest_value(2)
 
+    @flakey
     @selenium_test
     def test_run_data(self):
         test_path = self.get_filename("1.fasta")
         test_path_decoy = self.get_filename("1.txt")
+        # Upload form posts bad data if executed two times in a row like this, so
+        # wait between uploads. xref https://github.com/galaxyproject/galaxy/issues/5169
         self.perform_upload(test_path)
-        self.perform_upload(test_path_decoy)
         self.history_panel_wait_for_hid_ok(1)
+        self.perform_upload(test_path_decoy)
         self.history_panel_wait_for_hid_ok(2)
 
         self.home()