From 27dee6fadce94fc4f62e3cee95b8ef73ed8991b4 Mon Sep 17 00:00:00 2001
From: Nate Coraor <nate@bx.psu.edu>
Date: Mon, 7 Dec 2009 13:31:27 -0500
Subject: [PATCH] Fix path to HYPHY in buildbot_setup.sh

---
 buildbot_setup.sh | 16 +++++++++++++++-
 1 file changed, 15 insertions(+), 1 deletion(-)

diff --git a/buildbot_setup.sh b/buildbot_setup.sh
index 7bab8ed7b93..c10c10441fd 100644
--- a/buildbot_setup.sh
+++ b/buildbot_setup.sh
@@ -2,13 +2,22 @@
 
 cd `dirname $0`
 
+: ${HOSTTYPE:=`uname -m`}
+
+# link to HYPHY is arch-dependent
+case "$OSTYPE" in
+    linux-gnu)
+        kernel=`uname -r | cut -f1,2 -d.`
+        HYPHY="/galaxy/software/linux$kernel-$HOSTTYPE/hyphy"
+        ;;
+esac
+
 LINKS="
 /depot/data2/galaxy/alignseq.loc
 /depot/data2/galaxy/binned_scores.loc
 /depot/data2/galaxy/blastdb.loc
 /depot/data2/galaxy/bowtie_indices.loc
 /depot/data2/galaxy/encode_datasets.loc
-/home/universe/linux-i686/HYPHY
 /depot/data2/galaxy/lastz_seqs.loc
 /depot/data2/galaxy/liftOver.loc
 /depot/data2/galaxy/maf_index.loc
@@ -44,6 +53,11 @@ for link in $LINKS; do
     ln -sf $link tool-data
 done
 
+if [ -d "$HYPHY" ]; then
+    echo "Linking $HYPHY"
+    ln -sf $HYPHY tool-data/HYPHY
+fi
+
 for sample in $SAMPLES; do
     file=`echo $sample | sed -e 's/\.sample$//'`
     echo "Copying $sample to $file"